Psyllid ID: psy351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEccccEEEEEcccccccccEEEEEEcccEEEcHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHcccEEEEccccccEEEEEEccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccEEEEEEEEcccEEEEEEccccccccccEEEEcccHHHHcHHHHHHHcccccccEEEHHHHHccccccHHHHHHHcccccEEEEccccccEEEEEEccEEEEcccHcc
Coil and Loop (DISEMBL)
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIAlnkeskrktptlvafhkgertfgedaqiigtrfpsnsygYFLDLLgksidspvvqlfksrfpyydivadeergtivfktndnelyhVEELV
Flexible Loop (DISEMBL)
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIAlnkeskrktptlvafhkgertfgedaqiigTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVadeergtivfktndnelyhveelv
Low Complexity Region (SEG)
MLCLMKIslvtlcssvvllltlFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV
Disordered region (IsUnstruct)
*LCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALN*******PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYH*****
Disordered Region (DISOPRED)
*******SLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV
Disordered Region (DISEMBL)
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV
Disordered Region (DISPRO)
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q566I3	646	Hypoxia up-regulated prot	N/A	N/A	0.938	0.212	0.5	3e-36
Q0VA61	643	Hypoxia up-regulated prot	no	N/A	0.938	0.213	0.472	5e-34
Q5ZLK7	1002	Hypoxia up-regulated prot	yes	N/A	0.890	0.129	0.515	7e-33
Q7ZUW2	980	Hypoxia up-regulated prot	yes	N/A	0.952	0.141	0.468	4e-29
Q9Y4L1	999	Hypoxia up-regulated prot	yes	N/A	0.808	0.118	0.491	3e-27
Q9JKR6	999	Hypoxia up-regulated prot	yes	N/A	0.808	0.118	0.491	4e-27
Q63617	999	Hypoxia up-regulated prot	yes	N/A	0.808	0.118	0.491	2e-26
Q60432	999	Hypoxia up-regulated prot	yes	N/A	0.808	0.118	0.483	1e-25
Q10061	848	Heat shock protein 70 hom	yes	N/A	0.952	0.163	0.368	5e-22
F4JMJ1	867	Heat shock 70 kDa protein	yes	N/A	0.787	0.132	0.438	4e-18

>sp|Q566I3|HYOU1_XENLA Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus laevis GN=hyou1 PE=1 SV=2

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 9/146 (6%)

Query: 1   MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKES 60
           ++C++ + L  L SS         H+  +AVMSVDLGSEW+KVAIV PGVPMEI LNKES
Sbjct: 4   LVCVLWMFLFALLSS---------HTESVAVMSVDLGSEWVKVAIVKPGVPMEIVLNKES 54

Query: 61  KRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYD 120
           +RKTP  +A  + ER FGE+A  +  + P  ++ YF DLLGK +D+P VQ F++RFP Y 
Sbjct: 55  RRKTPAAIALKENERLFGENALGMAVKNPKVTFRYFQDLLGKRLDNPQVQAFEARFPEYH 114

Query: 121 IVADEERGTIVFKTNDNELYHVEELV 146
           +V DE R T++FK +++  Y  EEL+
Sbjct: 115 LVKDERRETVLFKLSEDLTYSPEELL 140

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.
Xenopus laevis (taxid: 8355)

>sp|Q0VA61|HYOU1_XENTR Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis GN=hyou1 PE=2 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 9/146 (6%)

Query: 1   MLCLMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKES 60
           ++C+  + L+ L SS         ++  +AVMSVD+GSEWMK+AIV PGVPMEI LNKES
Sbjct: 4   LVCVFTMFLLALLSS---------NTESVAVMSVDMGSEWMKIAIVKPGVPMEIVLNKES 54

Query: 61  KRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYD 120
           +RKTP  +A  + ER FG+ A  +  + P  ++ YF DLLGK  D+P V+ F++RFP Y 
Sbjct: 55  RRKTPVAIALKENERLFGDSALGMAVKNPKVTFRYFQDLLGKRADNPHVKAFEARFPEYQ 114

Query: 121 IVADEERGTIVFKTNDNELYHVEELV 146
           +V DE R T++FK ++   Y  EEL+
Sbjct: 115 LVKDEHRETVLFKLSEELTYSPEELL 140

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZLK7|HYOU1_CHICK Hypoxia up-regulated protein 1 OS=Gallus gallus GN=HYOU1 PE=2 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 91/130 (70%)

Query: 17  VLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERT 76
           +LL     H+  +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP  VA  + ER 
Sbjct: 12  LLLACCVPHTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERL 71

Query: 77  FGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND 136
           FG+ A  +  + P  ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + 
Sbjct: 72  FGDSALGMSIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQ 131

Query: 137 NELYHVEELV 146
              Y  EE++
Sbjct: 132 TLQYSPEEML 141

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Gallus gallus (taxid: 9031)

>sp|Q7ZUW2|HYOU1_DANRE Hypoxia up-regulated protein 1 OS=Danio rerio GN=hyou1 PE=2 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 88/141 (62%), Gaps = 2/141 (1%)

Query: 6   KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 65
           K+SL  +   VV  L     +  +AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP
Sbjct: 4   KLSLWAIFCLVVAFLP--SQTESVAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTP 61

Query: 66  TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 125
             V   + ER FG+ A  +  + P   Y +   +LGK+ D+P V  ++  FP + +  DE
Sbjct: 62  VAVCLKENERLFGDGALGVAVKNPKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDE 121

Query: 126 ERGTIVFKTNDNELYHVEELV 146
           +RGT+ FK ++   Y  EEL+
Sbjct: 122 KRGTVYFKFSEEMQYTPEELL 142

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding.

Danio rerio (taxid: 7955)

>sp|Q9Y4L1|HYOU1_HUMAN Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query: 29  IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
           +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct: 33  LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query: 89  PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct: 93  PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Homo sapiens (taxid: 9606)

>sp|Q9JKR6|HYOU1_MOUSE Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1

 Score =  120 bits (300), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 79/118 (66%)

Query: 29  IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
           +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   + ER  G+ A  +  + 
Sbjct: 33  LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92

Query: 89  PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           P  +  YF  LLGK  D+P V L++SRFP ++++ D +R T+ F+ +    +  EE++
Sbjct: 93  PKATLRYFQHLLGKQADNPHVALYRSRFPEHELIVDPQRQTVRFQISPQLQFSPEEVL 150

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Mus musculus (taxid: 10090)

>sp|Q63617|HYOU1_RAT Hypoxia up-regulated protein 1 OS=Rattus norvegicus GN=Hyou1 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/118 (49%), Positives = 78/118 (66%)

Query: 29  IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
           +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   + ER  G+ A  +  + 
Sbjct: 33  LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92

Query: 89  PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           P  +  YF  LLGK  D+P V L++SRFP +++  D +R T+ F+ +    +  EE++
Sbjct: 93  PKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVL 150

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Rattus norvegicus (taxid: 10116)

>sp|Q60432|HYOU1_CRIGR Hypoxia up-regulated protein 1 OS=Cricetulus griseus GN=HYOU1 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/118 (48%), Positives = 77/118 (65%)

Query: 29  IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
           +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP  V   + ER  G+ A  +  + 
Sbjct: 33  LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92

Query: 89  PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           P  +  YF  LLGK  D+P V L++ RFP +++  D +R T+ F+ +    +  EE++
Sbjct: 93  PKATLRYFQHLLGKQADNPHVALYRDRFPEHELNIDPQRQTVRFQISPQLQFSPEEVL 150

Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding.

Cricetulus griseus (taxid: 10029)

>sp|Q10061|LHS1_SCHPO Heat shock protein 70 homolog lhs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.06 PE=3 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 91/144 (63%), Gaps = 5/144 (3%)

Query: 5   MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 64
           MK S++T+   ++     F H++  +V+++D G+EW K A++ PG+P+EI L K+++RK 
Sbjct: 1   MKRSVLTI---ILFFSCQFWHAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKE 57

Query: 65  PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKS-IDSPVVQLFKSRFPYYDIVA 123
            + VAF   ER FG DA  + TRFP++S     +LL  + ++S +VQ ++S +P   +V 
Sbjct: 58  QSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVE 117

Query: 124 DEERGT-IVFKTNDNELYHVEELV 146
           +EE  + I F  +D E Y +EE++
Sbjct: 118 NEETTSGISFVISDEENYSLEEII 141

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|F4JMJ1|HSP7R_ARATH Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 6/121 (4%)

Query: 30  AVMSVDLGSEWMKVAIVS---PGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGT 86
           AV+SVDLGSEW+KVA+V+      P+ +A+N+ SKRK+P LVAF  G+R  GE+A  I  
Sbjct: 25  AVLSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSGDRLLGEEAAGITA 84

Query: 87  RFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEEL 145
           R+P+  Y    D++GK     V     S +  +DIV D  RG +  K +D + +Y VEEL
Sbjct: 85  RYPNKVYSQLRDMVGKPFKH-VKDFIDSVYLPFDIVED-SRGAVGIKIDDGSTVYSVEEL 142

Query: 146 V 146
           +
Sbjct: 143 L 143

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
322800098	949	hypothetical protein SINV_11855 [Solenop	0.945	0.145	0.671	2e-49
307184299	917	Hypoxia up-regulated protein 1 [Camponot	0.945	0.150	0.642	4e-49
345491538	923	PREDICTED: hypoxia up-regulated protein	0.856	0.135	0.688	2e-48
345491532	938	PREDICTED: hypoxia up-regulated protein	0.856	0.133	0.688	2e-48
383847076	946	PREDICTED: hypoxia up-regulated protein	0.965	0.149	0.617	3e-48
328784616	951	PREDICTED: hypoxia up-regulated protein	0.897	0.137	0.656	5e-48
380029680	952	PREDICTED: hypoxia up-regulated protein	0.897	0.137	0.656	1e-47
332031611	952	Hypoxia up-regulated protein 1 [Acromyrm	0.828	0.127	0.702	4e-47
307192771	946	Hypoxia up-regulated protein 1 [Harpegna	0.938	0.144	0.652	6e-47
403183091	925	AAEL017263-PA [Aedes aegypti]	0.897	0.141	0.636	3e-46

>gi|322800098|gb|EFZ21204.1| hypothetical protein SINV_11855 [Solenopsis invicta]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 114/140 (81%), Gaps = 2/140 (1%)

Query: 7   ISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT 66
           IS+ +L  S++L+ T    S  IAVMS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP 
Sbjct: 8   ISMASL--SLLLIATFIGISEEIAVMSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPV 65

Query: 67  LVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEE 126
           ++AF  GER+FGEDAQ+IG RFP N++ Y LDLLGK ID+P+VQL++ RFPYYDIVAD+E
Sbjct: 66  VIAFRDGERSFGEDAQVIGVRFPQNTFFYILDLLGKPIDNPLVQLYRDRFPYYDIVADDE 125

Query: 127 RGTIVFKTNDNELYHVEELV 146
           R TI F+ N+N  Y  EEL+
Sbjct: 126 RKTIAFRLNENTTYTPEELI 145

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184299|gb|EFN70757.1| Hypoxia up-regulated protein 1 [Camponotus floridanus]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 114/140 (81%), Gaps = 2/140 (1%)

Query: 7   ISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT 66
           +S+ +L   +++L T    S  IAVMS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP 
Sbjct: 8   VSMASLA--LLILATFIGISEEIAVMSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPA 65

Query: 67  LVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEE 126
           ++AF  GER+FGEDAQ++G RFP N++ Y LDLLGK ID+P+VQL++ RFPYY+I+AD+E
Sbjct: 66  VIAFRDGERSFGEDAQVVGVRFPQNTFSYILDLLGKPIDNPIVQLYQKRFPYYNIIADDE 125

Query: 127 RGTIVFKTNDNELYHVEELV 146
           R TIVF+ N+N  Y  EEL+
Sbjct: 126 RKTIVFRLNENTTYTPEELL 145

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491538|ref|XP_003426636.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 4 [Nasonia vitripennis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 104/125 (83%)

Query: 22  LFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA 81
           L   +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP  ++F  GERTFGEDA
Sbjct: 20  LSSQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTPVTISFRDGERTFGEDA 79

Query: 82  QIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYH 141
           Q++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD ER TIVF+ + +  Y 
Sbjct: 80  QVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADTERNTIVFRLDKDTTYT 139

Query: 142 VEELV 146
            EEL+
Sbjct: 140 PEELL 144

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491532|ref|XP_003426634.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 2 [Nasonia vitripennis] gi|345491534|ref|XP_001606217.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Nasonia vitripennis] gi|345491536|ref|XP_003426635.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 3 [Nasonia vitripennis]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 104/125 (83%)

Query: 22  LFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA 81
           L   +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP  ++F  GERTFGEDA
Sbjct: 20  LSSQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTPVTISFRDGERTFGEDA 79

Query: 82  QIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYH 141
           Q++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD ER TIVF+ + +  Y 
Sbjct: 80  QVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADTERNTIVFRLDKDTTYT 139

Query: 142 VEELV 146
            EEL+
Sbjct: 140 PEELL 144

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847076|ref|XP_003699181.1| PREDICTED: hypoxia up-regulated protein 1-like [Megachile rotundata]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 115/141 (81%)

Query: 6   KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 65
           K+++  + S +++++TL  +S G+AVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP
Sbjct: 5   KLNMTIIWSLLIIVITLIHNSSGVAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKTP 64

Query: 66  TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 125
             +AF  GER+FGEDAQ++G + P +S+ Y LDLLGKSID+P+VQL+K RFPYYDI++DE
Sbjct: 65  VTIAFRNGERSFGEDAQVVGIKSPQSSFSYILDLLGKSIDNPMVQLYKKRFPYYDIISDE 124

Query: 126 ERGTIVFKTNDNELYHVEELV 146
           ER TI F+ + N  Y  EEL+
Sbjct: 125 ERKTIAFRLDQNTTYTPEELL 145

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784616|ref|XP_624153.3| PREDICTED: hypoxia up-regulated protein 1-like [Apis mellifera]

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 108/131 (82%)

Query: 16  VVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
           ++ ++T  +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP  +AF  GER
Sbjct: 15  LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKTPVTIAFRNGER 74

Query: 76  TFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 135
           +FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYDI++DEER TI F+ +
Sbjct: 75  SFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYDIISDEERKTITFRLD 134

Query: 136 DNELYHVEELV 146
           +N  Y  EEL+
Sbjct: 135 ENTTYTPEELL 145

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029680|ref|XP_003698495.1| PREDICTED: hypoxia up-regulated protein 1-like [Apis florea]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 108/131 (82%)

Query: 16  VVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGER 75
           ++ ++T  +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP  +AF  GER
Sbjct: 15  LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKTPVTIAFRNGER 74

Query: 76  TFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 135
           +FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYDI++DEER TI F+ +
Sbjct: 75  SFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYDIISDEERKTITFRLD 134

Query: 136 DNELYHVEELV 146
           +N  Y  EEL+
Sbjct: 135 ENITYTPEELL 145

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031611|gb|EGI71083.1| Hypoxia up-regulated protein 1 [Acromyrmex echinatior]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 102/121 (84%)

Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S  +AVMS+DLGSEWMKVAIVSPGVPMEIALNKESKRKTP  +AF  GER+FGEDAQ+IG
Sbjct: 25  SEELAVMSIDLGSEWMKVAIVSPGVPMEIALNKESKRKTPVTIAFRDGERSFGEDAQVIG 84

Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
            RFP N++ Y LDLLGK ID+P+VQL++ RFPYYDI+AD+ER T+ F+ N+N  Y  EEL
Sbjct: 85  VRFPQNTFFYILDLLGKPIDNPLVQLYRKRFPYYDIIADDERKTVAFRLNENTTYTPEEL 144

Query: 146 V 146
           +
Sbjct: 145 L 145

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192771|gb|EFN75861.1| Hypoxia up-regulated protein 1 [Harpegnathos saltator]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 109/138 (78%), Gaps = 1/138 (0%)

Query: 10  VTLCSSVVLLLTLFEH-SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 68
           +++ S  +LL+  F   S  IAVMS+D+GSEWMKV IVSPGVPMEIALNKESKRKTP  +
Sbjct: 1   MSMASLALLLIASFIGISEEIAVMSIDIGSEWMKVGIVSPGVPMEIALNKESKRKTPVSI 60

Query: 69  AFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERG 128
           AF  GER+FGEDAQ+IG RFP N+Y Y LDLLGK ID+P+VQL+  RFPYY+I+AD+ER 
Sbjct: 61  AFRDGERSFGEDAQVIGVRFPQNTYSYILDLLGKPIDNPLVQLYLKRFPYYNIIADDERK 120

Query: 129 TIVFKTNDNELYHVEELV 146
           TI FK N+N  Y  EEL+
Sbjct: 121 TIAFKLNENTTYTPEELL 138

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183091|gb|EJY57847.1| AAEL017263-PA [Aedes aegypti]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 104/132 (78%), Gaps = 1/132 (0%)

Query: 15  SVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGE 74
           + V  L L   + G AVMSVDLGSEWMK+ +VSPGVPMEIALNKESKRKTPT +AF  G+
Sbjct: 17  ATVAFLALLNPTNGAAVMSVDLGSEWMKIGVVSPGVPMEIALNKESKRKTPTTIAFRNGD 76

Query: 75  RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT 134
           R  GEDAQ +G RFP+N+YGY +DLLGK++D P+VQL++ RFPYYDI+ D  R T+VFK 
Sbjct: 77  RLIGEDAQTLGVRFPANNYGYLIDLLGKTVDHPMVQLYRKRFPYYDIIEDPTRKTVVFK- 135

Query: 135 NDNELYHVEELV 146
           N +E Y +EEL+
Sbjct: 136 NGDEQYTIEELI 147

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
FB|FBgn0023529	923	CG2918 [Drosophila melanogaste	0.828	0.131	0.669	2.2e-40
UNIPROTKB|Q5ZLK7	1002	HYOU1 "Hypoxia up-regulated pr	0.835	0.121	0.532	4.9e-29
UNIPROTKB|F1NJZ5	980	HYOU1 "Hypoxia up-regulated pr	0.808	0.120	0.542	1.6e-28
UNIPROTKB|F1NY05	986	HYOU1 "Hypoxia up-regulated pr	0.808	0.119	0.542	1.6e-28
ZFIN|ZDB-GENE-030131-5344	980	hyou1 "hypoxia up-regulated 1"	0.808	0.120	0.508	4.7e-26
UNIPROTKB|J3KTF1	224	HYOU1 "Hypoxia up-regulated pr	0.808	0.526	0.491	2.2e-25
UNIPROTKB|J3QL06	211	HYOU1 "Hypoxia up-regulated pr	0.808	0.559	0.491	2.2e-25
UNIPROTKB|E9PJ21	656	HYOU1 "Hypoxia up-regulated pr	0.808	0.179	0.491	1.8e-24
UNIPROTKB|E9PL22	937	HYOU1 "Hypoxia up-regulated pr	0.808	0.125	0.491	3.7e-24
UNIPROTKB|Q9Y4L1	999	HYOU1 "Hypoxia up-regulated pr	0.808	0.118	0.491	4.1e-24

FB|FBgn0023529 CG2918 [Drosophila melanogaster (taxid:7227)]

 Score = 439 (159.6 bits), Expect = 2.2e-40, P = 2.2e-40
 Identities = 81/121 (66%), Positives = 100/121 (82%)

Query:    26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
             S G AVMSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF  G RT GEDAQ IG
Sbjct:    17 SQGAAVMSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDGTRTIGEDAQTIG 76

Query:    86 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
              + P+++YGY LDLLGK+ID+P+V L++ RFPYY+IV D ER T+VF+ +D + + VEEL
Sbjct:    77 IKDPNSAYGYLLDLLGKTIDNPIVDLYRKRFPYYNIVGDPERNTVVFRKSDTDEFSVEEL 136

Query:   146 V 146
             V
Sbjct:   137 V 137

GO:0006457 "protein folding" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|Q5ZLK7 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 4.9e-29, P = 4.9e-29
 Identities = 65/122 (53%), Positives = 88/122 (72%)

Query:    25 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 84
             H+  +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP  VA  + ER FG+ A  +
Sbjct:    20 HTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGM 79

Query:    85 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEE 144
               + P  ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK +    Y  EE
Sbjct:    80 SIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEE 139

Query:   145 LV 146
             ++
Sbjct:   140 ML 141

GO:0005524 "ATP binding" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

UNIPROTKB|F1NJZ5 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 64/118 (54%), Positives = 86/118 (72%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP  VA  + ER FG+ A  +  + 
Sbjct:     3 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 62

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK +    Y  EE++
Sbjct:    63 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEML 120

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NY05 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 64/118 (54%), Positives = 86/118 (72%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP  VA  + ER FG+ A  +  + 
Sbjct:    24 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 83

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK +    Y  EE++
Sbjct:    84 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEML 141

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5344 hyou1 "hypoxia up-regulated 1" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 4.7e-26, P = 4.7e-26
 Identities = 60/118 (50%), Positives = 79/118 (66%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP  V   + ER FG+ A  +  + 
Sbjct:    25 VAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTPVAVCLKENERLFGDGALGVAVKN 84

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P   Y +   +LGK+ D+P V  ++  FP + +  DE+RGT+ FK ++   Y  EEL+
Sbjct:    85 PKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDEKRGTVYFKFSEEMQYTPEELL 142

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

UNIPROTKB|J3KTF1 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct:    33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct:    93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J3QL06 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct:    33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct:    93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PJ21 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct:    33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct:    93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PL22 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct:    33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct:    93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9Y4L1 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 4.1e-24, P = 4.1e-24
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query:    29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 88
             +AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V   + ER FG+ A  +  + 
Sbjct:    33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92

Query:    89 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
             P  +  YF  LLGK  D+P V L+++RFP +++  D +R T+ F+ +    +  EE++
Sbjct:    93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVL 150

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006950 "response to stress" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLK7	HYOU1_CHICK	No assigned EC number	0.5153	0.8904	0.1297	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
cd10230	388	cd10230, HYOU1-like_NBD, Nucleotide-binding domain	9e-56
cd11732	377	cd11732, HSP105-110_like_NBD, Nucleotide-binding d	2e-24
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	6e-13
pfam00012	598	pfam00012, HSP70, Hsp70 protein	1e-10
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	1e-07
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	7e-07
cd11739	383	cd11739, HSPH1_NBD, Nucleotide-binding domain of H	1e-06
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	1e-06
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	9e-06
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	5e-05
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	8e-05
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	2e-04
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	4e-04
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	4e-04
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	5e-04
cd10232	386	cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma	0.001
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	0.001
cd10238	375	cd10238, HSPA14-like_NBD, Nucleotide-binding domai	0.002
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	0.002
cd11738	383	cd11738, HSPA4L_NBD, Nucleotide-binding domain of	0.002
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	0.003
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	0.003

>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins

 Score =  178 bits (454), Expect = 9e-56
 Identities = 67/115 (58%), Positives = 80/115 (69%)

Query: 32  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 91
           + +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF  GER FG DA  +  RFP  
Sbjct: 1   LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60

Query: 92  SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
            Y +  DLLGK  D P V L++SR P   +V DE RGT+ FK +D E Y VEELV
Sbjct: 61  VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELV 115

This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388

>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins

 Score = 95.9 bits (238), Expect = 2e-24
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 32  MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 91
             +DLG+    +A+      ++I +N+ S R TP++V F    R  GE  +   T    N
Sbjct: 1   FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59

Query: 92  SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           +      ++G     P  +   K        + D++ G  V    +  ++   +L 
Sbjct: 60  TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 115

This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           +V+ +D G+    VA+   G  +++  N+ S R+TP+LV+F + +R  GE A+       
Sbjct: 1   SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 135
            N+   F  L+G+  D P VQ      P + +V   + G +  K N
Sbjct: 60  KNTVRNFKRLIGRKFDDPEVQKELKFLP-FKVVELPD-GKVGIKVN 103

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
           V+ +DLG+    VA++  G P E+  N E  R TP++VAF   ER  G+ A+      P 
Sbjct: 1   VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
           N+      L+G+    PVVQ      P Y +V        V      E +  E++
Sbjct: 60  NTVFSVKRLIGRKFSDPVVQRDIKHVP-YKVVKLPNGDAGVEVRYLGETFTPEQI 113

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 34  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 92
           +DLG+    VA++  G   ++  N E +R TP++VAF K GE   G+ A+      P N+
Sbjct: 10  IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69

Query: 93  YGYFLDLLGKS 103
                  +G+ 
Sbjct: 70  IFSIKRKIGRG 80

Length = 579

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
           V+ +DLG+ +  V +   G  +EI  N +  R TP+ VAF  GER  G+ A+   T  P 
Sbjct: 3   VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE 138
           N+      L+G+  D   VQ      P Y +V  + +  I       +
Sbjct: 62  NTIFDVKRLIGRKFDDKEVQKDIKLLP-YKVVNKDGKPYIEVDVKGEK 108

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           +V+  D+G +   +A+   G  +E   N+ S R TP++++F    RT G  A+       
Sbjct: 1   SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEEL 145
           +N+   F    G++ + P VQ  K     YD+V   +   G  V    +  L+ VE++
Sbjct: 60  NNTVSNFKRFHGRAFNDPFVQKEKENLS-YDLVPLKNGGVGVKVMYMGEEHLFSVEQI 116

Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
           ++ +DLG+    VA++    P+ I  N E KR TP++V+F K     GE A+      P 
Sbjct: 4   IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIV 122
           N++     L+G+      VQ  K + PYY IV
Sbjct: 63  NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV 93

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           + G A+  +DLG+ +  V  V     +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59

Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 144
            R P N+      L+G+  D  VVQ     +P+      +++  I V    + + +H EE
Sbjct: 60  ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119

Query: 145 L 145
           +
Sbjct: 120 I 120

Length = 653

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 39/123 (31%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 27  YGIAVMSVDLG---SEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 82
            GI     DLG   S    VA V  G   EI  N E  R TP++V F   GE   GE A+
Sbjct: 1   IGI-----DLGTTNSA---VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAK 52

Query: 83  IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 142
                 P N+ G F  L+G+  D P+VQ  K                 V      + Y  
Sbjct: 53  RQALDNPENTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSP 108

Query: 143 EEL 145
           EE+
Sbjct: 109 EEV 111

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 89
           ++ +DLG+    VAI+    P  I  N E  R TP++VAF + G+R  G  A+      P
Sbjct: 43  IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+  D    +  +   PY
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPY 130

Length = 663

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 88
           AV+ +DLG+    VA++    P  I  N E  R TP++VAF K GER  G  A+      
Sbjct: 3   AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61

Query: 89  PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIV 122
           P N+      L+G+  D P VQ      P Y IV
Sbjct: 62  PENTLYATKRLIGRRFDDPEVQKDIKNVP-YKIV 94

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 89
           V+ +DLG+    VA +  G P  I  N E +R TP++VA+ K G+R  G+ A+      P
Sbjct: 41  VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99

Query: 90  SNSY 93
            N++
Sbjct: 100 ENTF 103

Length = 673

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 34  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
           +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+N+ 
Sbjct: 4   IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62

Query: 94  GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
                L+G+    PVVQ     +P+  +    +   IV    + + ++ EE+
Sbjct: 63  FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEI 114

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 89
          ++ +DLG+    VA++  G P+ IA N E  R TP++V F K GE   G+ A+      P
Sbjct: 4  IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62

Query: 90 SNSY 93
           N++
Sbjct: 63 QNTF 66

Length = 668

>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 87
            V+ ++ G+ +  +A ++ G    IA N++ +R+ P+ +++H  +   G  A  Q+I  R
Sbjct: 1   TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57

Query: 88  FPSNSYGYFLDLLGKSIDSP 107
              N+   F DLLGK     
Sbjct: 58  NAKNTITNFRDLLGKPFSEI 77

Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA 81
          ++ +DLG+    VA++  G P  I  N E  R TP++VAF K GER  G+ A
Sbjct: 4  IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPA 54

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 53  EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 112
           ++  N    R TP +VAF   E   G  A+    R  +N+      +LG+S   P  Q  
Sbjct: 23  DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82

Query: 113 KSRFPYYDIVADEERGTIVFKTNDNELYHV 142
           K+      I  D E    +F   + +  HV
Sbjct: 83  KTESSCKIIEKDGEPKYEIFT--EEKTKHV 110

Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
           V+ VDLG+ +  VA +       +  N E  R TP++VAF   E+  G  A+      P 
Sbjct: 29  VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           +++     L+G+  +   +Q      PY
Sbjct: 88  STFYAVKRLIGRRFEDEHIQKDIKNVPY 115

Length = 657

>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           +V+ +DLG     +A+   G  +E   N+ S R TP  ++     R  G  A+       
Sbjct: 1   SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+   F  L G+S D P+VQ  + R PY
Sbjct: 60  RNTIHGFKKLHGRSFDDPIVQTERIRLPY 88

Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 82
          V+ +DLG+    VA++  G P+ I  N E  R TP++V F K G+R  G+ A+
Sbjct: 4  VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAK 55

Length = 653

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA 81
          ++ +DLG+    VA++  G P+ I  N E  R TP++VAF K GER  G+ A
Sbjct: 2  IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPA 52

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
KOG0100|consensus	663		99.97
PTZ00009	653	heat shock 70 kDa protein; Provisional	99.91
PTZ00400	663	DnaK-type molecular chaperone; Provisional	99.91
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	99.91
KOG0102|consensus	640		99.91
PRK13410	668	molecular chaperone DnaK; Provisional	99.89
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	99.88
PRK13411	653	molecular chaperone DnaK; Provisional	99.88
PLN03184	673	chloroplast Hsp70; Provisional	99.88
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	99.87
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	99.87
CHL00094	621	dnaK heat shock protein 70	99.87
KOG0101|consensus	620		99.87
KOG0103|consensus	727		99.86
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	99.86
PRK05183	616	hscA chaperone protein HscA; Provisional	99.86
KOG0104|consensus	902		99.85
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	99.73
PRK01433	595	hscA chaperone protein HscA; Provisional	99.72
PRK11678	450	putative chaperone; Provisional	99.59
PRK13929	335	rod-share determining protein MreBH; Provisional	98.5
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	98.25
PRK13928	336	rod shape-determining protein Mbl; Provisional	98.16
COG1077	342	MreB Actin-like ATPase involved in cell morphogene	98.11
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	98.06
PRK13930	335	rod shape-determining protein MreB; Provisional	97.88
PRK13927	334	rod shape-determining protein MreB; Provisional	97.77
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	92.13
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	90.47
PRK10331	470	L-fuculokinase; Provisional	88.69
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	88.52
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	86.84
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	86.68
PRK15027	484	xylulokinase; Provisional	86.64
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	86.61
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	85.81
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	85.58
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	85.46
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	85.03
PTZ00294	504	glycerol kinase-like protein; Provisional	84.95
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	84.95
PRK00047	498	glpK glycerol kinase; Provisional	84.93
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	84.52
PLN00130	213	succinate dehydrogenase (SDH3); Provisional	84.17
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	84.17
PLN02295	512	glycerol kinase	83.64
PRK04123	548	ribulokinase; Provisional	82.72
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	82.01
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	81.79
PRK13321	256	pantothenate kinase; Reviewed	80.73

>KOG0100|consensus

Probab=99.97  E-value=9.9e-32  Score=222.69  Aligned_cols=116  Identities=28%  Similarity=0.381  Sum_probs=107.3

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      -+.+||||||||+|||+++.+| +++|+.|++|+|.+||+|+|.+.+|++|.+|++|+..||+||+++.||||||+|+|+
T Consensus        35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~  113 (663)
T KOG0100|consen   35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK  113 (663)
T ss_pred             cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence            3579999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEcC--CcEEEeeeee
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKTN--DNELYHVEEL  145 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~~--~~~~~speev  145 (146)
                      .+|++.++|||+++.+++ ...+.+..+  +.+.|+||||
T Consensus       114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEi  152 (663)
T KOG0100|consen  114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEI  152 (663)
T ss_pred             hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHH
Confidence            999999999999887765 566666654  4589999997

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=99.91  E-value=1.6e-24  Score=191.04  Aligned_cols=118  Identities=26%  Similarity=0.400  Sum_probs=102.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      .+.++|||||||||+||++++| ++++++|++|+|.+||+|+|.++++++|+.|++++.++|+++++++||+||++++|+
T Consensus         3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~   81 (653)
T PTZ00009          3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS   81 (653)
T ss_pred             cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence            4578999999999999999998 999999999999999999999889999999999999999999999999999999999


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV  146 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~  146 (146)
                      .++...+++||.++..++....+.+.. ++++.|+||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~  121 (653)
T PTZ00009         82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEIS  121 (653)
T ss_pred             hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHH
Confidence            999999999998764322233333433 445789999973

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=99.91  E-value=5.2e-24  Score=188.12  Aligned_cols=115  Identities=24%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS  106 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d  106 (146)
                      .+.++|||||||||+||++++| ++++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++++|
T Consensus        40 ~~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d  118 (663)
T PTZ00400         40 TGDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDE  118 (663)
T ss_pred             cCcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCc
Confidence            3579999999999999999888 899999999999999999996 46899999999999999999999999999999999


Q ss_pred             hhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351          107 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus       107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      +.++...+++||+++..  .+|.+.+..+ ++.|+||||+
T Consensus       119 ~~~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~speel~  155 (663)
T PTZ00400        119 DATKKEQKILPYKIVRA--SNGDAWIEAQ-GKKYSPSQIG  155 (663)
T ss_pred             HHHHhhhccCCeEEEec--CCCceEEEEC-CEEECHHHHH
Confidence            99999999999987643  2566666655 4799999973

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=99.91  E-value=3.3e-24  Score=189.11  Aligned_cols=115  Identities=23%  Similarity=0.333  Sum_probs=103.5

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      .+.++||||||||||||+++++ ++++++|..|.|.+||+|+|.++++++|..|++++.++|.++++++||+||++++|+
T Consensus        26 ~~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~  104 (657)
T PTZ00186         26 QGDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE  104 (657)
T ss_pred             cceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence            3469999999999999999988 899999999999999999999889999999999999999999999999999999999


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      .++...+.+||+++. +. ++..++..++++.|+||||
T Consensus       105 ~v~~~~~~~p~~vv~-~~-~~~~~i~~~~~~~~speei  140 (657)
T PTZ00186        105 HIQKDIKNVPYKIVR-AG-NGDAWVQDGNGKQYSPSQI  140 (657)
T ss_pred             HHHHhhccCcEEEEE-cC-CCceEEEeCCCeEEcHHHH
Confidence            999999999998764 32 5666666555689999997

>KOG0102|consensus

Probab=99.91  E-value=2.7e-24  Score=182.67  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=108.6

Q ss_pred             ccCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCC
Q psy351           26 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI  104 (146)
Q Consensus        26 ~~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~  104 (146)
                      .....++|||+||||||+|++.++ .+.++.|.+|.|.+||.|+|. ++++++|..|++++..||.|+++..||+|||+|
T Consensus        24 ~~~~~vigidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf  102 (640)
T KOG0102|consen   24 KVKGKVIGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRF  102 (640)
T ss_pred             CCCCceeeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhc
Confidence            567789999999999999999988 888999999999999999995 569999999999999999999999999999999


Q ss_pred             CChhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          105 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       105 ~d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      +||++|++++.+||+++. . .||..|++. +++.|||+|+
T Consensus       103 ~d~evq~~~k~vpyKiVk-~-~ngdaw~e~-~G~~~spsqi  140 (640)
T KOG0102|consen  103 DDPEVQKDIKQVPYKIVK-A-SNGDAWVEA-RGKQYSPSQI  140 (640)
T ss_pred             cCHHHHHHHHhCCcceEE-c-cCCcEEEEe-CCeEecHHHH
Confidence            999999999999999876 3 599999998 7899999986

>PRK13410 molecular chaperone DnaK; Provisional

Probab=99.89  E-value=6.1e-23  Score=181.46  Aligned_cols=113  Identities=27%  Similarity=0.371  Sum_probs=97.2

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      +.++|||||||||+||++++| .++++.|++|+|.+||+|+|. ++++++|..|++++.++|.++++++||+||++++| 
T Consensus         2 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-   79 (668)
T PRK13410          2 GRIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-   79 (668)
T ss_pred             CcEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence            368999999999999999998 888999999999999999996 46899999999999999999999999999999987 


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV  146 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~  146 (146)
                       ++...+++||.+.. + .+|.+.+.. ..++.|+||||+
T Consensus        80 -~~~~~~~~~~~v~~-~-~~g~~~i~~~~~~~~~speel~  116 (668)
T PRK13410         80 -LDPESKRVPYTIRR-N-EQGNVRIKCPRLEREFAPEELS  116 (668)
T ss_pred             -hHHhhccCCeEEEE-C-CCCcEEEEEecCCeEEcHHHHH
Confidence             66677889998754 3 256666654 235799999973

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=99.88  E-value=6.6e-23  Score=179.99  Aligned_cols=111  Identities=28%  Similarity=0.408  Sum_probs=97.5

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      .++|||||||||+||++++| .+++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++  ++.
T Consensus         3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~   79 (627)
T PRK00290          3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE   79 (627)
T ss_pred             cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence            58999999999999999988 888999999999999999996 67899999999999999999999999999999  566


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      ++.+.+++||+++..  .+|...+..+ ++.|+||||+
T Consensus        80 ~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~~peel~  114 (627)
T PRK00290         80 VQKDIKLVPYKIVKA--DNGDAWVEID-GKKYTPQEIS  114 (627)
T ss_pred             HHHHhhcCCeEEEEc--CCCceEEEEC-CEEEcHHHHH
Confidence            888889999987643  2565556555 4789999873

>PRK13411 molecular chaperone DnaK; Provisional

Probab=99.88  E-value=1.3e-22  Score=179.01  Aligned_cols=110  Identities=26%  Similarity=0.392  Sum_probs=95.5

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      .++|||||||||+||++++| ++++++|++|+|.+||+|+|.+ +++++|+.|++++.++|.++++++|||||++++|+ 
T Consensus         3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~-   80 (653)
T PRK13411          3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT-   80 (653)
T ss_pred             cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch-
Confidence            58999999999999999999 8889999999999999999964 58999999999999999999999999999999995 


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                       +...+++||+++..  .++.+.+..+ ++.|+||||
T Consensus        81 -~~~~~~~~~~~v~~--~~~~~~~~i~-~~~~~peei  113 (653)
T PRK13411         81 -EEERSRVPYTCVKG--RDDTVNVQIR-GRNYTPQEI  113 (653)
T ss_pred             -hHHhhcCCceEEec--CCCceEEEEC-CEEECHHHH
Confidence             44567899987643  2565556555 478999987

>PLN03184 chloroplast Hsp70; Provisional

Probab=99.88  E-value=1.1e-22  Score=179.89  Aligned_cols=115  Identities=24%  Similarity=0.382  Sum_probs=98.2

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCC
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID  105 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~  105 (146)
                      ....++|||||||||+||++++| ++++++|++|+|.+||+|+|. ++++++|..|++++.++|.++++++|||||++++
T Consensus        37 ~~~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~  115 (673)
T PLN03184         37 VAEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS  115 (673)
T ss_pred             cCCCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcc
Confidence            34569999999999999999998 888999999999999999996 4589999999999999999999999999999998


Q ss_pred             ChhhhhhccCcceEEeecCCCCceEEEEcC-CcEEEeeeeeC
Q psy351          106 SPVVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELV  146 (146)
Q Consensus       106 d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~-~~~~~speev~  146 (146)
                      |  ++...+.+||.++..  .+|.+.+... .++.|+||||+
T Consensus       116 d--~~~~~~~~~~~v~~~--~~~~v~~~~~~~~~~~speei~  153 (673)
T PLN03184        116 E--VDEESKQVSYRVVRD--ENGNVKLDCPAIGKQFAAEEIS  153 (673)
T ss_pred             h--hhhhhhcCCeEEEec--CCCcEEEEEecCCeEEcHHHHH
Confidence            7  567778899987643  2566666542 35789999873

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=99.87  E-value=1.7e-22  Score=175.09  Aligned_cols=113  Identities=40%  Similarity=0.602  Sum_probs=95.6

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhhh
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ  110 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v~  110 (146)
                      ++||||||+||+||++.++ +++++.|..|+|++||+|+|.++++++|..|..+..++|+++++++|||||++++++.++
T Consensus         1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~   79 (602)
T PF00012_consen    1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ   79 (602)
T ss_dssp             EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred             CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence            6899999999999999998 999999999999999999999889999999999999999999999999999999999999


Q ss_pred             hhccCcceEEeecCCCCceEEEEc---CCcEEEeeeeeC
Q psy351          111 LFKSRFPYYDIVADEERGTIVFKT---NDNELYHVEELV  146 (146)
Q Consensus       111 ~~~~~~p~~~v~~d~~~g~~~~~~---~~~~~~speev~  146 (146)
                      +..+.+||.++..+  +|...+..   ++.+.|+|+|++
T Consensus        80 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  116 (602)
T PF00012_consen   80 KEKKKFPYKVVEDP--DGKVYFEVDYDGKSKTYSPEELS  116 (602)
T ss_dssp             HHHTTSSSEEEEET--TTEEEEEEEETTEEEEEEHHHHH
T ss_pred             hhhhcccccccccc--cccccccccccccceeeeeeccc
Confidence            99999999876542  34444432   334689999873

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=99.87  E-value=2.8e-22  Score=174.95  Aligned_cols=110  Identities=30%  Similarity=0.487  Sum_probs=95.6

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      .++|||||||||+||++++| .++++.|++|+|.+||+|+|.+ +++++|..|++++.++|.++++++||+||+++++  
T Consensus         1 ~viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~--   77 (595)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDE--   77 (595)
T ss_pred             CEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchH--
Confidence            37999999999999999999 8889999999999999999974 4899999999999999999999999999999954  


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      ++...+++||+ +..  .+|.+.+..+ ++.|+||||+
T Consensus        78 ~~~~~~~~~~~-v~~--~~~~~~~~v~-~~~~~peel~  111 (595)
T TIGR02350        78 VTEEAKRVPYK-VVG--DGGDVRVKVD-GKEYTPQEIS  111 (595)
T ss_pred             HHHHhhcCCee-EEc--CCCceEEEEC-CEEecHHHHH
Confidence            77778899998 333  2566666665 4789999873

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>CHL00094 dnaK heat shock protein 70

Probab=99.87  E-value=5.3e-22  Score=174.21  Aligned_cols=113  Identities=24%  Similarity=0.336  Sum_probs=96.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      +.++|||||||||+||++++| .++++.|++|+|.+||+|+|.+ +++++|+.|++++..+|.++++++||+||++++| 
T Consensus         2 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-   79 (621)
T CHL00094          2 GKVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-   79 (621)
T ss_pred             CceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence            368999999999999999999 8899999999999999999964 5899999999999999999999999999999987 


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeeeC
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELV  146 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev~  146 (146)
                       ++...+.+||.++..  .+|.+.+.. ..++.|+||||+
T Consensus        80 -~~~~~~~~~~~v~~~--~~g~i~~~~~~~~~~~s~eei~  116 (621)
T CHL00094         80 -ISEEAKQVSYKVKTD--SNGNIKIECPALNKDFSPEEIS  116 (621)
T ss_pred             -HHhhhhcCCeEEEEC--CCCCEEEEEecCCeEEcHHHHH
Confidence             666677899987543  256666653 235789999873

>KOG0101|consensus

Probab=99.87  E-value=6e-22  Score=171.86  Aligned_cols=118  Identities=27%  Similarity=0.404  Sum_probs=103.6

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS  106 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d  106 (146)
                      ..+.++|||||||++||+++..+ +++++.|++|+|.+||+|+|.+.++++|.+|+++...+|.|+++++||+||+.++|
T Consensus         5 ~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d   83 (620)
T KOG0101|consen    5 PESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD   83 (620)
T ss_pred             cccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence            45689999999999999999988 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeee
Q psy351          107 PVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEEL  145 (146)
Q Consensus       107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev  145 (146)
                      |.+|.++++|||++...++....+.+.. ++.+.|+|||+
T Consensus        84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peei  123 (620)
T KOG0101|consen   84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEI  123 (620)
T ss_pred             hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeee
Confidence            9999999999998763333233444443 44578999986

>KOG0103|consensus

Probab=99.86  E-value=1.3e-22  Score=175.99  Aligned_cols=117  Identities=26%  Similarity=0.380  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      |.++|||||+.||.+|+.+.+ .++++.|+.++|.+|++|+|..++|++|.+|+++..+|+.|++.++|||+||+|+||.
T Consensus         1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~   79 (727)
T KOG0103|consen    1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE   79 (727)
T ss_pred             CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence            348999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEee-cCCCCceEEEEcCCcEEEeeeeeC
Q psy351          109 VQLFKSRFPYYDIV-ADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus       109 v~~~~~~~p~~~v~-~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      +|.+.+++|+.++. +|+..|..+-+.++.+.|+|+||+
T Consensus        80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~  118 (727)
T KOG0103|consen   80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL  118 (727)
T ss_pred             hhhcccccchheeecCCCCcceeehcccCCCCCChHHHH
Confidence            99999999998764 576667666677888999999985

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=99.86  E-value=7.5e-22  Score=172.73  Aligned_cols=108  Identities=24%  Similarity=0.322  Sum_probs=93.4

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-CeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhh
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV  109 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v  109 (146)
                      +||||||||||+||++++| +++++.|.+|++.+||+|+|.+ +++++|..|++++.++|.++++++|||||++++|+  
T Consensus         1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~--   77 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDI--   77 (599)
T ss_pred             CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccch--
Confidence            5899999999999999998 8999999999999999999975 48999999999999999999999999999999884  


Q ss_pred             hhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          110 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       110 ~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      +. .+.+||+++..  .+|.+.+...+ ..++|+||
T Consensus        78 ~~-~~~~~~~~~~~--~~~~~~~~~~~-~~~~p~ei  109 (599)
T TIGR01991        78 KT-FSILPYRFVDG--PGEMVRLRTVQ-GTVTPVEV  109 (599)
T ss_pred             hh-cccCCEEEEEc--CCCceEEEeCC-CEEcHHHH
Confidence            33 56789986532  35677776654 48999987

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=99.86  E-value=1.3e-21  Score=171.77  Aligned_cols=111  Identities=22%  Similarity=0.342  Sum_probs=96.4

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      ..+||||||||||+||++.+| ++++++|.+|++.+||+|+|.++++++|..|++++.++|.++++++|||||++++|  
T Consensus        19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--   95 (616)
T PRK05183         19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--   95 (616)
T ss_pred             CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence            468999999999999999998 88999999999999999999877899999999999999999999999999999987  


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      ++...+.+||.+...  .+|.+.+...+ ..|+||||
T Consensus        96 ~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~p~ei  129 (616)
T PRK05183         96 IQQRYPHLPYQFVAS--ENGMPLIRTAQ-GLKSPVEV  129 (616)
T ss_pred             hhhhhhcCCeEEEec--CCCceEEEecC-CeEcHHHH
Confidence            455567789976532  25777776654 48899987

>KOG0104|consensus

Probab=99.85  E-value=1.1e-21  Score=171.38  Aligned_cols=133  Identities=57%  Similarity=0.976  Sum_probs=120.9

Q ss_pred             HHHHHHHHhhhcccCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCee
Q psy351           14 SSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY   93 (146)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i   93 (146)
                      ..++|+.++.......++++||+|+.++.||++.+|-+++|++|.+++|++|+.|+|.+++|++|.+|.+++.++|.+++
T Consensus         7 lv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~   86 (902)
T KOG0104|consen    7 LVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTY   86 (902)
T ss_pred             HHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHH
Confidence            34455566666778889999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             ecchhhccCCCCChhhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351           94 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus        94 ~~~KrliG~~~~d~~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      ..+|.++|++.+||.++.+.+++||..++.|+.++.+.|..++...||+||++
T Consensus        87 ~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEell  139 (902)
T KOG0104|consen   87 RQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELL  139 (902)
T ss_pred             HHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHH
Confidence            99999999999999999999999997666666789999998877899999974

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=7.5e-18  Score=147.15  Aligned_cols=76  Identities=28%  Similarity=0.362  Sum_probs=70.1

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-eeeecHhHHHhhhcCCCCeeecchhhccCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS  103 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~~i~~~KrliG~~  103 (146)
                      .+.++||||||||||||+++++..++++.|..|.|.+||+|+|.++ ++++|+.|++++..+|.++++++||++|++
T Consensus         4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~   80 (579)
T COG0443           4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG   80 (579)
T ss_pred             CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence            3578999999999999999977458899999999999999999855 699999999999999999999999999997

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=99.72  E-value=9e-18  Score=147.07  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV  109 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v  109 (146)
                      .+||||||||||+||++.+| +++++.|++|++.+||+|+|.++++++|..|          +++++||+||++++|...
T Consensus        20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~   88 (595)
T PRK01433         20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN   88 (595)
T ss_pred             eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence            58999999999999999888 8999999999999999999987789999987          789999999999987321


Q ss_pred             hhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          110 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       110 ~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      +..........+.. + ++...+..+ ++.|+||||
T Consensus        89 ~~~~~~~~k~~~~~-~-~~~~~~~~~-~~~~speei  121 (595)
T PRK01433         89 TPALFSLVKDYLDV-N-SSELKLNFA-NKQLRIPEI  121 (595)
T ss_pred             chhhHhhhhheeec-C-CCeeEEEEC-CEEEcHHHH
Confidence            11100011111111 1 334455544 478999987

>PRK11678 putative chaperone; Provisional

Probab=99.59  E-value=2e-15  Score=128.57  Aligned_cols=73  Identities=18%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc--------------------------------------
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------   71 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~--------------------------------------   71 (146)
                      +++|||||||||+||++++| +++++++++|++.+||+|+|.                                      
T Consensus         1 ~~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T PRK11678          1 MFIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDI   79 (450)
T ss_pred             CeEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccc
Confidence            36899999999999999988 889999999999999999993                                      


Q ss_pred             ---CCeeeecHhHHHhhhcCCCCe--eecchhhccCC
Q psy351           72 ---KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKS  103 (146)
Q Consensus        72 ---~~~~~vG~~A~~~~~~~p~~~--i~~~KrliG~~  103 (146)
                         +++.++|..|++++..+|.++  ++++||+||.+
T Consensus        80 ~~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~  116 (450)
T PRK11678         80 DVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGAS  116 (450)
T ss_pred             cccccccchhHHHHHhhccCCCCceEEecchhhhccC
Confidence               346789999999999999988  88999999965

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.50  E-value=2.6e-07  Score=75.92  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-e--eeecHhHHHhhhcCCCCeeec
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGY   95 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-~--~~vG~~A~~~~~~~p~~~i~~   95 (146)
                      ..+||||||+|+++  +.++ +. ++.|+      ||+|+++++ .  ..+|.+|++++.++|.++...
T Consensus         5 ~~~giDlGt~~~~i--~~~~-~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~   63 (335)
T PRK13929          5 TEIGIDLGTANILV--YSKN-KG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV   63 (335)
T ss_pred             CeEEEEcccccEEE--EECC-Cc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE
Confidence            36999999999986  4455 32 45564      999999743 2  589999999999999987553

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=98.25  E-value=1.9e-06  Score=70.49  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=39.6

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC-----e--eeecHhHHHhhhcCCCCe
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNS   92 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~-----~--~~vG~~A~~~~~~~p~~~   92 (146)
                      .+||||||+||+++....+  . ++ .      .||+|++.++     +  ..+|.+|++++.+.|.++
T Consensus         4 ~~giDlGt~~s~i~~~~~~--~-~~-~------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~   62 (333)
T TIGR00904         4 DIGIDLGTANTLVYVKGRG--I-VL-N------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNI   62 (333)
T ss_pred             eeEEecCcceEEEEECCCC--E-EE-e------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCE
Confidence            3999999999999875433  2 33 2      5999999632     2  679999999988877765

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=98.16  E-value=4.1e-06  Score=68.60  Aligned_cols=53  Identities=28%  Similarity=0.398  Sum_probs=41.3

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCee
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSY   93 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~i   93 (146)
                      -+||||||+|++|+...++   .++.       .||+|++.++   -..+|.+|++++.+.|.+..
T Consensus         5 ~~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~   60 (336)
T PRK13928          5 DIGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIV   60 (336)
T ss_pred             eeEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEE
Confidence            4899999999999886444   3433       3999999742   34799999999888888765

>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]

Probab=98.11  E-value=5.9e-06  Score=67.78  Aligned_cols=54  Identities=31%  Similarity=0.444  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC--C---eeeecHhHHHhhhcCCCCe
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNS   92 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~--~---~~~vG~~A~~~~~~~p~~~   92 (146)
                      +..+||||||.|+.|+....|    +++|+      ||+|+...  +   -..+|.+|+++.-+.|.|.
T Consensus         6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni   64 (342)
T COG1077           6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI   64 (342)
T ss_pred             cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc
Confidence            458999999999999887666    88888      99999965  2   3479999999999999885

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=98.06  E-value=3.8e-06  Score=69.24  Aligned_cols=53  Identities=28%  Similarity=0.529  Sum_probs=40.4

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCe
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNS   92 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~   92 (146)
                      ..+||||||+|+.|+.-.+|    ++.++      ||+|+++.+   -..+|++|+++..+.|.+.
T Consensus         2 ~~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i   57 (326)
T PF06723_consen    2 KDIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI   57 (326)
T ss_dssp             SEEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE
T ss_pred             CceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc
Confidence            46999999999998765555    66776      999999742   4568999999999999875

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=97.88  E-value=3.1e-05  Score=63.03  Aligned_cols=52  Identities=29%  Similarity=0.437  Sum_probs=39.5

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC---CeeeecHhHHHhhhcCCCCe
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNS   92 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~---~~~~vG~~A~~~~~~~p~~~   92 (146)
                      .+||||||+|++++....+  . ++ +      +||+|++.+   +..++|.+|++...+.|.+.
T Consensus        10 ~vgiDlGt~~t~i~~~~~~--~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~   64 (335)
T PRK13930         10 DIGIDLGTANTLVYVKGKG--I-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI   64 (335)
T ss_pred             ceEEEcCCCcEEEEECCCC--E-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe
Confidence            4999999999999886332  2 22 2      499999964   24689999999887777654

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=97.77  E-value=6.1e-05  Score=61.41  Aligned_cols=53  Identities=28%  Similarity=0.430  Sum_probs=39.5

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC---eeeecHhHHHhhhcCCCCe
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNS   92 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~---~~~vG~~A~~~~~~~p~~~   92 (146)
                      ..+||||||+|++++.  .++.. ++ +      +||+|++.+.   ..++|.+|+++..+.|.++
T Consensus         6 ~~igIDlGt~~~~i~~--~~~~~-~~-~------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~   61 (334)
T PRK13927          6 NDLGIDLGTANTLVYV--KGKGI-VL-N------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI   61 (334)
T ss_pred             ceeEEEcCcceEEEEE--CCCcE-EE-e------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCE
Confidence            4699999999999854  34222 32 2      6999999643   3489999999988887765

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=92.13  E-value=0.2  Score=38.93  Aligned_cols=20  Identities=15%  Similarity=0.388  Sum_probs=17.7

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         1 y~lgiDiGTts~K~~l~d~~   20 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDED   20 (245)
T ss_dssp             EEEEEEECSSEEEEEEEETT
T ss_pred             CEEEEEEcccceEEEEEeCC
Confidence            37899999999999999854

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=90.47  E-value=0.32  Score=32.19  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=17.5

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|.|++.+|+.+..
T Consensus         2 ~ilgiD~Ggt~i~~a~~d~~   21 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVDET   21 (99)
T ss_pred             cEEEEccCCCeEEEEEECCC
Confidence            47999999999999998644

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK10331 L-fuculokinase; Provisional

Probab=88.69  E-value=0.51  Score=40.43  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=18.2

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~~   22 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDRQ   22 (470)
T ss_pred             ceEEEEecCCCceEEEEEcCC
Confidence            357999999999999999754

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=88.52  E-value=0.68  Score=40.18  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||+|||++++.+++..
T Consensus         3 ~~~~lgIDiGTt~~Kavl~d~~   24 (502)
T COG1070           3 MKYVLGIDIGTTSVKAVLFDED   24 (502)
T ss_pred             ccEEEEEEcCCCcEEEEEEeCC
Confidence            4688999999999999999876

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=86.84  E-value=0.78  Score=39.84  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=18.1

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         4 ~~lgID~GTts~Ka~l~d~~   23 (520)
T PRK10939          4 YLMALDAGTGSIRAVIFDLN   23 (520)
T ss_pred             EEEEEecCCCceEEEEECCC
Confidence            68999999999999999854

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=86.68  E-value=0.75  Score=39.38  Aligned_cols=20  Identities=10%  Similarity=0.336  Sum_probs=17.8

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         2 ~ilgiD~GTss~K~~l~d~~   21 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINRQ   21 (465)
T ss_pred             eEEEEecCCCcEEEEEEcCC
Confidence            37899999999999999865

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PRK15027 xylulokinase; Provisional

Probab=86.64  E-value=0.72  Score=39.65  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||+|||++++++++..
T Consensus         2 ~lgID~GTts~Ka~l~d~~   20 (484)
T PRK15027          2 YIGIDLGTSGVKVILLNEQ   20 (484)
T ss_pred             EEEEEecccceEEEEEcCC
Confidence            6899999999999999864

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=86.61  E-value=1.5  Score=31.66  Aligned_cols=21  Identities=19%  Similarity=0.558  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|+..+-+|+.++.
T Consensus         1 mriL~lD~G~kriGiAvsd~~   21 (135)
T PF03652_consen    1 MRILGLDYGTKRIGIAVSDPL   21 (135)
T ss_dssp             -EEEEEEECSSEEEEEEEETT
T ss_pred             CeEEEEEeCCCeEEEEEecCC
Confidence            568999999999999999886

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=85.81  E-value=0.87  Score=39.83  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=17.5

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         1 ~~lgID~GTts~Ka~l~d~~   20 (541)
T TIGR01315         1 HYIGVDVGTGSARACIIDST   20 (541)
T ss_pred             CEEEEEecCcCEEEEEEcCC
Confidence            36899999999999999754

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=85.58  E-value=0.79  Score=35.94  Aligned_cols=19  Identities=26%  Similarity=0.491  Sum_probs=16.9

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||.|||++++++++++
T Consensus         2 ~lGIDiGtts~K~vl~d~g   20 (248)
T TIGR00241         2 SLGIDSGSTTTKMVLMEDG   20 (248)
T ss_pred             EEEEEcChhheEEEEEcCC
Confidence            6899999999999999844

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>smart00268 ACTIN Actin

Probab=85.46  E-value=1.5  Score=36.09  Aligned_cols=46  Identities=24%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC-C--------eeeecHhHHHh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--------ERTFGEDAQII   84 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~-~--------~~~vG~~A~~~   84 (146)
                      ..+.||+||.++++.+..+. .+.+        ..||+|+... .        ..++|.+|...
T Consensus         2 ~~iviD~Gs~~~k~G~~~~~-~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~   56 (373)
T smart00268        2 PAIVIDNGSGTIKAGFAGED-EPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEK   56 (373)
T ss_pred             CeEEEECCCCcEEEeeCCCC-CCcE--------EccceeeEecccccccCCCcceEecchhhhc
Confidence            46899999999999876544 2322        2377776532 1        35789888543

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=85.03  E-value=0.98  Score=39.04  Aligned_cols=19  Identities=21%  Similarity=0.455  Sum_probs=17.2

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||+|||++++++++..
T Consensus         2 ~lgiDiGtt~~K~~l~d~~   20 (505)
T TIGR01314         2 MIGVDIGTTSTKAVLFEEN   20 (505)
T ss_pred             EEEEeccccceEEEEEcCC
Confidence            6899999999999999754

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=84.95  E-value=1  Score=39.02  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.0

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         3 ~~lgiDiGTts~Ka~l~d~~   22 (504)
T PTZ00294          3 YIGSIDQGTTSTRFIIFDEK   22 (504)
T ss_pred             EEEEEecCCCceEEEEECCC
Confidence            57999999999999999865

>TIGR01311 glycerol_kin glycerol kinase

Probab=84.95  E-value=1.5  Score=37.84  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         2 ~~lgiDiGtt~iKa~l~d~~   21 (493)
T TIGR01311         2 YILAIDQGTTSSRAIVFDKD   21 (493)
T ss_pred             eEEEEecCCCceEEEEECCC
Confidence            47999999999999999754

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>PRK00047 glpK glycerol kinase; Provisional

Probab=84.93  E-value=1.1  Score=38.75  Aligned_cols=21  Identities=14%  Similarity=0.264  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         5 ~~~lgiD~GTts~Ka~l~d~~   25 (498)
T PRK00047          5 KYILALDQGTTSSRAIIFDHD   25 (498)
T ss_pred             CEEEEEecCCCceEEEEECCC
Confidence            358999999999999999754

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=84.52  E-value=1  Score=36.87  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      .+..+|||.|+|++++++.+++
T Consensus        31 ~m~~~GIDiGStt~K~Vlld~~   52 (293)
T TIGR03192        31 KIITCGIDVGSVSSQAVLVCDG   52 (293)
T ss_pred             ccEEEEEEeCchhEEEEEEeCC
Confidence            3678999999999999999855

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PLN00130 succinate dehydrogenase (SDH3); Provisional

Probab=84.17  E-value=0.17  Score=38.67  Aligned_cols=32  Identities=6%  Similarity=-0.048  Sum_probs=24.2

Q ss_pred             HHHHhhhcccCCcEEEEEcCCccEEEEEEeCC
Q psy351           18 LLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        18 ~~~~~~~~~~~~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.-+|.+.-+..-.+|+|+||+|++++...+.
T Consensus        46 ~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~   77 (213)
T PLN00130         46 FSRAFGSKPVVNDILGTGLGTNNAIREEREKS   77 (213)
T ss_pred             HHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence            34455555666789999999999999887654

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=84.17  E-value=1.3  Score=38.70  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=16.9

Q ss_pred             cEEEEEcCCccEEEEEEe
Q psy351           30 AVMSVDLGSEWMKVAIVS   47 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~   47 (146)
                      .++|||+|||++++++++
T Consensus         2 ~~lgiD~GTss~Ka~l~d   19 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVD   19 (536)
T ss_pred             eEEEEecCCCceEEEEEE
Confidence            479999999999999999

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>PLN02295 glycerol kinase

Probab=83.64  E-value=1.2  Score=38.60  Aligned_cols=19  Identities=21%  Similarity=0.280  Sum_probs=17.1

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||+|||++++++++..
T Consensus         2 vlgID~GTts~Ka~l~d~~   20 (512)
T PLN02295          2 VGAIDQGTTSTRFIIYDRD   20 (512)
T ss_pred             EEEEecCCCceEEEEECCC
Confidence            6899999999999999754

>PRK04123 ribulokinase; Provisional

Probab=82.72  E-value=1.3  Score=38.65  Aligned_cols=20  Identities=20%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             CcEEEEEcCCccEEEEEEeC
Q psy351           29 IAVMSVDLGSEWMKVAIVSP   48 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~   48 (146)
                      ..++|||+|||++++++++.
T Consensus         3 ~~~lgiD~GTts~Ka~l~d~   22 (548)
T PRK04123          3 AYVIGLDFGTDSVRALLVDC   22 (548)
T ss_pred             cEEEEEecCCCceEEEEEEC
Confidence            35899999999999999983

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=82.01  E-value=2.1  Score=35.30  Aligned_cols=46  Identities=20%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc----------CCeeeecHhHHHhh
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH----------KGERTFGEDAQIIG   85 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~----------~~~~~vG~~A~~~~   85 (146)
                      .+.||+||.++++.+..+. .+..        .+||+++..          +...++|.+|....
T Consensus         1 ~iViD~Gs~~~r~G~a~~~-~p~~--------~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~   56 (371)
T cd00012           1 AVVIDNGSGTIKAGFAGED-APRV--------VFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR   56 (371)
T ss_pred             CEEEECCCCeEEEEeCCCC-CCce--------EeeccceeecCcccccccCCCceEEchhhhhCC
Confidence            3789999999999877555 2221        235555442          24668899887653

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=81.79  E-value=2  Score=30.00  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=16.5

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      +++||+|++.++++++..+
T Consensus         1 i~~iDiGs~~~~~~i~~~~   19 (120)
T PF14450_consen    1 IVVIDIGSSKTKVAIAEDG   19 (120)
T ss_dssp             EEEEEE-SSSEEEEEEETT
T ss_pred             CEEEEcCCCcEEEEEEEeC
Confidence            5799999999999999887

>PRK13321 pantothenate kinase; Reviewed

Probab=80.73  E-value=1.9  Score=34.04  Aligned_cols=20  Identities=15%  Similarity=0.424  Sum_probs=17.8

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      ++++||+|+|++++++++++
T Consensus         1 MiL~IDIGnT~ik~gl~~~~   20 (256)
T PRK13321          1 MLLLIDVGNTNIKLGVFDGD   20 (256)
T ss_pred             CEEEEEECCCeEEEEEEECC
Confidence            36899999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3gdq_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		6e-07
1ba1_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		2e-06
1kax_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71m		3e-06
3jxu_A	409	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-06
3d2e_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70,		5e-06
1bup_A	386	T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot		6e-06
3d2f_B	382	Crystal Structure Of A Complex Of Sse1p And Hsp70 L		6e-06
1hjo_A	380	Atpase Domain Of Human Heat Shock 70kda Protein 1 L		7e-06
2e8a_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		7e-06
2e88_A	391	Crystal Structure Of The Human Hsp70 Atpase Domain		7e-06
3a8y_A	392	Crystal Structure Of The Complex Between The Bag5 B		7e-06
1kay_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71a		8e-06
1s3x_A	382	The Crystal Structure Of The Human Hsp70 Atpase Dom		9e-06
1qqn_A	378	D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		9e-06
2qwn_A	394	Crystal Structure Of Disulfide-Bond-Crosslinked Com		1e-05
2qw9_B	394	Crystal Structure Of Bovine Hsc70 (1-394aa)in The A		1e-05
1atr_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		1e-05
1ngd_A	386	Structural Basis Of The 70-kilodalton Heat Shock Co		1e-05
1ngf_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-05
1nga_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-05
1ngb_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-05
3cqx_A	386	Chaperone Complex Length = 386		1e-05
1hpm_A	386	How Potassium Affects The Activity Of The Molecular		1e-05
1ats_A	386	Threonine 204 Of The Chaperone Protein Hsc70 Influe		1e-05
1ngc_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-05
1nge_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		1e-05
1ba0_A	386	Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi		1e-05
1qqo_A	378	E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		1e-05
3c7n_B	554	Structure Of The Hsp110:hsc70 Nucleotide Exchange C		1e-05
3fzf_A	381	Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP		1e-05
1yuw_A	554	Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214		1e-05
1kaz_A	381	70kd Heat Shock Cognate Protein Atpase Domain, K71e		1e-05
1hx1_A	400	Crystal Structure Of A Bag Domain In Complex With T		1e-05
2v7z_A	543	Crystal Structure Of The 70-Kda Heat Shock Cognate		1e-05
2bup_A	381	T13g Mutant Of The Atpase Fragment Of Bovine Hsc70		2e-05
1qqm_A	378	D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro		2e-05
3kvg_A	400	Crystal Structure Of The N-Terminal Domain Of Hsp70		3e-05
1ngh_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		4e-05
1ngg_A	386	Structural Basis Of The 70-Kilodalton Heat Shock Co		8e-05
3iuc_A	408	Crystal Structure Of The Human 70kda Heat Shock Pro		9e-05
3ldl_A	384	Crystal Structure Of Human Grp78 (70kda Heat Shock		9e-05
4fsv_A	387	Crystal Structure Of A Heat Shock 70kda Protein 2 (		1e-04
4gni_A	409	Structure Of The Ssz1 Atpase Bound To Atp And Magne		1e-04
3qfp_A	390	Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D		2e-04
3qfu_A	394	Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE		2e-04
3i33_A	404	Crystal Structure Of The Human 70kda Heat Shock Pro		2e-04
3gl1_A	387	Crystal Structure Of Atpase Domain Of Ssb1 Chaperon		2e-04
1dkg_D	383	Crystal Structure Of The Nucleotide Exchange Factor		4e-04
3fe1_A	403	Crystal Structure Of The Human 70kda Heat Shock Pro		4e-04
2kho_A	605	Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP		6e-04

>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 28  GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTR 87
           GIA+  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+     
Sbjct: 28  GIAI-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 85
Query: 88  FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 145
            P N+      L+G+  + PVVQ     +P+  I    +   +V    +N+ ++ EE+
Sbjct: 86  NPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEI 143

>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ + KV +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSKVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+    + L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAMRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 23  FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 82
           F+     A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+
Sbjct: 20  FQSMAKAAAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAK 78
Query: 83  IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
                 P N+      L+G+    PVVQ     +P+
Sbjct: 79  NQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPF 114

>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 5   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 64  QNTVFDAKRLIGRKFGDPVVQSDXKHWPF 92

>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLGS +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 5   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 64  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 92

>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 3   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 61
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 62  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 90

>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 8   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 66
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 67  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 95

>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 8   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 66
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 67  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 95

>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 9   AAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 67
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 68  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 96

>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAARLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 30  AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 89
           A + +DLG+ +  + +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P
Sbjct: 5   AAIGIDLGTTYSCIGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNP 63
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            N+      L+G+    PVVQ     +P+
Sbjct: 64  QNTVFDAKRLIGRKFGDPVVQSDMKHWPF 92

>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 3   AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           N+      L+G++ D  VVQ     +P+
Sbjct: 62  NTVFDAKRLIGRAFDDAVVQSDMKHWPF 89

>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|3CQX|A Chain A, Chaperone Complex Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 7   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 64
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 65  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 105

>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 3   AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
           N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 62  NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 97

>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 6   AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 64
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
           N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 65  NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAERLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 25  AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 83
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
           N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 84  NTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 119

>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG  +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGGTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 3   AVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           N+      L+G+  D  VVQ     +P+
Sbjct: 62  NTVFDAKRLIGRRFDDAVVQSDMKHWPF 89

>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 28  GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTR 87
           G   + +DLG+ +  V +      ++I  N +  R TP+ VAF + ER  G+ A+    R
Sbjct: 18  GGPAIGIDLGTTYSCVGVWRNDT-VDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVAR 76
Query: 88  FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEEL 145
            P N+      L+G+  D   VQ   + +P+  +   +++  I V    + + +H EE+
Sbjct: 77  NPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEI 135

>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  ++LG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GINLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  + LG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GISLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 86  TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEER 127
              P+N+      L+G+  D  VVQ     +P+  +V D  R
Sbjct: 60  AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFM-VVNDAGR 100

>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFP 89
           V+ +DLG+ +  V +   G  +EI  N +  R TP+ VAF  +GER  G+ A+   T  P
Sbjct: 28  VVGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 86
Query: 90  SNSYGYFLDLLGKSIDSPVVQ 110
            N+      L+G++ + P VQ
Sbjct: 87  ENTVFDAKRLIGRTWNDPSVQ 107

>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFP 89
           V+ +DLG+ +  V +   G  +EI  N +  R TP+ VAF  +GER  G+ A+   T  P
Sbjct: 7   VVGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNP 65
Query: 90  SNSYGYFLDLLGKSIDSPVVQ 110
            N+      L+G++ + P VQ
Sbjct: 66  ENTVFDAKRLIGRTWNDPSVQ 86

>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 7   AIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAXNPT 65
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           N+      L+G+  +   VQ     +P+
Sbjct: 66  NTIFDAKRLIGRKFEDATVQSDXKHWPF 93

>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 53  EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLG---KSID 105
           E+  N++  R+ PT++++  G+  +G+ A+    R P N+  YF D+LG   KS+D
Sbjct: 36  EVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91

>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 25  HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 84
            +YG  V+ +DLG+ +  VA++  G   EI  N++  R TP+ VAF   ER  G+ A+  
Sbjct: 11  ENYG-TVIGIDLGTTYSCVAVMKNG-KTEILANEQGNRITPSYVAFTDDERLIGDAAKNQ 68
Query: 85  GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
               P N+      L+G   +   VQ      P+
Sbjct: 69  VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPF 102

>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 25  AIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 83
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           N+      L+G+  +   VQ     +P+
Sbjct: 84  NTIFDAKRLIGRKFEDATVQSDMKHWPF 111

>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  VA     V  EI  N++  R TP+ VAF   ER  G+ A+      P 
Sbjct: 12  AIGIDLGTTYSCVATYESSV--EIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPR 69
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
           N+      L+G+  D   VQ     +P+  I  D
Sbjct: 70  NTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVD 103

>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFP 89
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+   GE   G+ A+      P
Sbjct: 4   IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
            N+      L+G+      VQ   S  P+  I AD
Sbjct: 63  QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAAD 97

>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G  +EI  N +  R TP+ VAF   ER  G+ A+      P 
Sbjct: 26  AVGIDLGTTYSCVGVFQQG-RVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPH 84
Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
           N+      L+G+      VQ     +P+
Sbjct: 85  NTVFDAKRLIGRKFADTTVQSDMKHWPF 112

>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFP 89
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+   GE   G+ A+      P
Sbjct: 4   IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
            N+      L+G+      VQ   S  P+  I AD
Sbjct: 63  QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAAD 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	1e-07
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	2e-05
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	4e-05
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	1e-04
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	2e-04
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	3e-04
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	7e-04

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 34  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 93
           +DLG+    +A+       +I +N+ S R TP++V F    R  GE  +   T    N+ 
Sbjct: 7   LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65

Query: 94  GYFLDLLGKSIDSPVVQLFKSRFPY 118
                ++G     P  +     F  
Sbjct: 66  ANLKRIIGLDYHHPDFEQESKHFTS 90

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 26  SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 85
           S G AV  +DLG+ +  V +   G   EI  N +  R TP+ VAF   ER  G+ A+   
Sbjct: 2   SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59

Query: 86  TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIV 131
              P+N+     D   L+G+  D  VVQ     +P + +V D  R  + 
Sbjct: 60  AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWP-FMVVNDAGRPKVQ 104

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 87
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+ + GE   G+ A  Q +   
Sbjct: 4   IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61

Query: 88  FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 124
            P N+      L+G+      VQ   S  P+  I AD
Sbjct: 62  -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAAD 97

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA 81
          ++ +DLG+    VA++  G    I  N E  R TP++VAF  GER  GE A
Sbjct: 4  IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVA 53

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 87
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+ + GE   G+ A  Q +   
Sbjct: 4   IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61

Query: 88  FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY 118
            P N+      L+G+      VQ   S  P+
Sbjct: 62  -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF 91

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLG+ +  V +   G   EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 25  AIGIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 83

Query: 91  NSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEE 144
           N+     D   L+G+  +   VQ     +P + +V++  +  +  +       +  EE
Sbjct: 84  NT---IFDAKRLIGRKFEDATVQSDMKHWP-FRVVSEGGKPKVQVEYKGETKTFFPEE 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.91
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.9
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.9
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	99.89
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.88
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	99.87
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	99.85
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	99.8
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.66
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	98.48
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	96.43
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	96.09
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	95.62
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	95.58
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	94.82
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	93.68
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	92.13
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	89.11
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	88.51
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	87.57
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	86.95
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	86.68
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	86.55
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	86.45
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	86.31
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	86.29
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	86.13
1vhx_A	150	Putative holliday junction resolvase; structural g	85.87
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	85.59
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	85.53
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	85.25
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	85.14
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	84.74
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	84.68
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	84.41
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	84.29
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	84.26
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	84.17
3djc_A	266	Type III pantothenate kinase; structural genomics,	83.97
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	82.78
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	82.68
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	81.59

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.91  E-value=1.4e-24  Score=186.77  Aligned_cols=115  Identities=26%  Similarity=0.396  Sum_probs=100.0

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      +.+||||||||||+||++.+| +++++.|++|++++||+|+|.++++++|.+|++++.++|.++++++||+||++++|+.
T Consensus         4 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~   82 (554)
T 1yuw_A            4 GPAVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV   82 (554)
T ss_dssp             CCCEEEEECSSEEEEEEECSS-SEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred             CCEEEEEeCcccEEEEEEECC-EEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence            468999999999999999988 9999999999999999999988899999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev  145 (146)
                      ++...+++||.++..++ ...+.+.. ++.+.|+||||
T Consensus        83 v~~~~~~~p~~v~~~~g-~~~~~v~~~~~~~~~sp~ei  119 (554)
T 1yuw_A           83 VQSDMKHWPFMVVNDAG-RPKVQVEYKGETKSFYPEEV  119 (554)
T ss_dssp             HHHHHTTCSSEEEEETT-EEEEEEEETTEEEEECHHHH
T ss_pred             HHHHhhcCCeEEEecCC-ceEEEEEECCCceEEcHHHH
Confidence            99999999998764332 22222322 34578999987

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.90  E-value=2.3e-24  Score=189.42  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=101.0

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      |.+||||||||||+||++.+| +++++.|++|+|.+||+|+|.++++++|..|++++.++|.++++++||+||++++|+.
T Consensus         2 m~~iGIDlGTtns~va~~~~g-~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~   80 (675)
T 3d2f_A            2 STPFGLDLGNNNSVLAVARNR-GIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD   80 (675)
T ss_dssp             CCCEEEECCSSEEEEEEEETT-EEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred             CcEEEEEcCCCcEEEEEEECC-eeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence            568999999999999999998 8999999999999999999988899999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEc---CCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKT---NDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~---~~~~~~speev  145 (146)
                      +|.+.+++||+++..  .+|.+.+..   ++.+.|+||||
T Consensus        81 v~~~~~~~p~~v~~~--~~g~~~~~~~~~g~~~~~speei  118 (675)
T 3d2f_A           81 FEQESKHFTSKLVEL--DDKKTGAEVRFAGEKHVFSATQL  118 (675)
T ss_dssp             HHHHHTTCCSEEEEC--TTSBEEEEEEETTEEEEEEHHHH
T ss_pred             HHHHHhhCCeeEEEc--CCCceEEEEEeCCCCceEcHHHH
Confidence            999999999987542  245555432   44578999987

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.90  E-value=1.1e-23  Score=182.78  Aligned_cols=113  Identities=23%  Similarity=0.314  Sum_probs=102.3

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      +.+||||||||||+||++.+| .++++.|.+|++.+||+|+|. ++++++|..|++++.++|.++++++|||||++++|+
T Consensus         2 ~~viGIDlGTT~S~Va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~   80 (605)
T 4b9q_A            2 GKIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE   80 (605)
T ss_dssp             CCEEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred             CcEEEEEcCCCcEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence            468999999999999999988 899999999999999999996 568999999999999999999999999999999999


Q ss_pred             hhhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          108 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       108 ~v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      .++...+++||+++..  .+|.+.+..+ ++.++|+||
T Consensus        81 ~v~~~~~~~p~~~~~~--~~g~~~~~~~-~~~~~p~ei  115 (605)
T 4b9q_A           81 EVQRDVSIMPFKIIAA--DNGDAWVEVK-GQKMAPPQI  115 (605)
T ss_dssp             HHHHHHTTCSSEEEEC--TTSBEEEEET-TEEECHHHH
T ss_pred             HHHHHhhcCCeEEEEc--CCCceEEEEC-CEEECHHHH
Confidence            9999999999987643  3677777765 479999987

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=99.89  E-value=2.7e-23  Score=170.71  Aligned_cols=117  Identities=23%  Similarity=0.401  Sum_probs=101.7

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS  106 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d  106 (146)
                      ..+.+||||||||||+||++.+| .++++.|+.|++++||+|+|.++++++|..|+.++.++|.++++++||+||++++|
T Consensus        21 ~~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~   99 (404)
T 3i33_A           21 QSMPAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED   99 (404)
T ss_dssp             --CCCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred             ccCCEEEEEcCCccEEEEEEECC-eeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence            56789999999999999999988 89999999999999999999888999999999999999999999999999999999


Q ss_pred             hhhhhhccCcceEEeecCCCCceEEEEc-CCcEEEeeeee
Q psy351          107 PVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEEL  145 (146)
Q Consensus       107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~-~~~~~~speev  145 (146)
                      +.++...+++||.++..++ ...+.+.. ++.+.++|||+
T Consensus       100 ~~~~~~~~~~p~~~~~~~g-~~~~~v~~~~~~~~~~~~ei  138 (404)
T 3i33_A          100 ATVQSDMKHWPFRVVSEGG-KPKVQVEYKGETKTFFPEEI  138 (404)
T ss_dssp             HHHHHHHTTCSSEEEEETT-EEEEEEEETTEEEEECHHHH
T ss_pred             HHHHHHHhhCCceEEccCC-ceEEEEEeCCCceEEcHHHH
Confidence            9999999999998776443 33444443 33478999986

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.88  E-value=4.2e-23  Score=179.19  Aligned_cols=112  Identities=24%  Similarity=0.350  Sum_probs=99.3

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      .++|||||||||+||++.+| .++++.|++|++.+||+|+|. ++++++|..|++++.++|.++++++||+||++++|+.
T Consensus         3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~   81 (605)
T 2kho_A            3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE   81 (605)
T ss_dssp             -CEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred             CEEEEEcCCcCEEEEEEECC-EEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence            58999999999999999988 899999999999999999995 5789999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      ++...+++||.++..  .+|.+.+..+ ++.|+|+||
T Consensus        82 v~~~~~~~p~~~~~~--~~g~~~i~~~-g~~~~~~ei  115 (605)
T 2kho_A           82 VQRDVSIMPFKIIAA--DNGDAWVEVK-GQKMAPPQI  115 (605)
T ss_dssp             HHHHHHHCSSCEEEC--TTSBEEEEET-TEEECHHHH
T ss_pred             HHHHhhcCCeEEEEC--CCCceEEEEC-CEEEcHHHH
Confidence            999888999987533  2566777664 478999987

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=99.85  E-value=1.6e-21  Score=159.14  Aligned_cols=112  Identities=24%  Similarity=0.350  Sum_probs=97.9

Q ss_pred             cEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           30 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      .++||||||||++||++.+| .++++.|++|++++||+|+|. ++++++|.+|++++.++|+++++++||+||++++|+.
T Consensus         3 ~~vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~   81 (383)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE   81 (383)
T ss_dssp             CCCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred             cEEEEEcCCCCEEEEEEECC-eeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence            57999999999999999988 889999999999999999995 4688999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEeecCCCCceEEEEcCCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev  145 (146)
                      ++...+.+||.++..  .+|...+..+ ++.++|+||
T Consensus        82 ~~~~~~~~p~~~~~~--~~~~~~~~~~-g~~~~~~~i  115 (383)
T 1dkg_D           82 VQRDVSIMPFKIIAA--DNGDAWVEVK-GQKMAPPQI  115 (383)
T ss_dssp             HHHHTTTCSSEEEEC--SSSBEEEEET-TEEECHHHH
T ss_pred             HHHHhhcCCeEEEEc--CCCcEEEEEC-CEEEcHHHH
Confidence            998888999987533  2455566553 468999986

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=99.80  E-value=1.6e-19  Score=148.71  Aligned_cols=113  Identities=22%  Similarity=0.357  Sum_probs=93.6

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCC
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS  106 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d  106 (146)
                      ..+.++||||||||++||++.++ +++++.|..|++++||+|+|.++++++|.+|++++.++|.++++++||++|++++|
T Consensus        11 m~~~vvGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~   89 (409)
T 4gni_A           11 GERVVIGITFGNSNSSIAHTVDD-KAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKS   89 (409)
T ss_dssp             --CCEEEEEECSSEEEEEEEETT-EEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGG
T ss_pred             CCCcEEEEEcCCCeEEEEEEeCC-ceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccc
Confidence            35689999999999999999777 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCcceEEeecCCCCceEEEEcC-------CcEEEeeeee
Q psy351          107 PVVQLFKSRFPYYDIVADEERGTIVFKTN-------DNELYHVEEL  145 (146)
Q Consensus       107 ~~v~~~~~~~p~~~v~~d~~~g~~~~~~~-------~~~~~speev  145 (146)
                      +.++...  .++.....   +|.+.+...       +++.++|+||
T Consensus        90 ~~~~~~~--~~~~~~~~---~g~~~~~v~~~~~~~~~~~~~~~~ev  130 (409)
T 4gni_A           90 VDPTHNH--ASAHPQEA---GDNVVFTIKDKAEEDAEPSTLTVSEI  130 (409)
T ss_dssp             CCCGGGT--TSCCCEEE---TTEEEEEECCSSCSSCCCEEEEHHHH
T ss_pred             hhhhhhc--cccceecC---CCcEEEEEecCCCCCCcceEEcHHHH
Confidence            7766543  34433332   455555432       3478999987

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.66  E-value=2e-16  Score=134.44  Aligned_cols=75  Identities=31%  Similarity=0.463  Sum_probs=70.4

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID  105 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~  105 (146)
                      +.++|||||||||+||++.+| .++++.|++|++.+||+|+|.++++++|.+|++++.++| ++++++||+||+++.
T Consensus         2 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~   76 (509)
T 2v7y_A            2 SKIIGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK   76 (509)
T ss_dssp             CCEEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC
T ss_pred             CCEEEEEcCCceEEEEEEECC-EEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE
Confidence            368999999999999999988 899999999999999999998788999999999999999 999999999999765

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=98.48  E-value=1.1e-07  Score=75.98  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=42.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCC--e-eeecHhHHHhhhcCCCCee
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSY   93 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~--~-~~vG~~A~~~~~~~p~~~i   93 (146)
                      +.++||||||+|+++++..++    .+.+      +||+|+|.++  + .++|.+|+++..++|.++.
T Consensus         3 ~~~igIDlGT~~s~v~~~~~~----~~~~------~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~   60 (344)
T 1jce_A            3 RKDIGIDLGTANTLVFLRGKG----IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK   60 (344)
T ss_dssp             -CEEEEEECSSEEEEEETTTE----EEEE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE
T ss_pred             CceEEEEcCcCcEEEEECCCC----EEEe------eCcEEEEecCCCcEEEEcHHHHHhcccCCCCeE
Confidence            368999999999999874322    2233      6999999653  3 4799999999999998864

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=96.43  E-value=0.0022  Score=49.43  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|||++.+++++++
T Consensus         1 M~~lGID~GsT~tk~av~d~~   21 (276)
T 4ehu_A            1 MYTMGLDIGSTASKGVILKNG   21 (276)
T ss_dssp             CEEEEEEECSSCEEEEEEETT
T ss_pred             CeEEEEEcCccEEEEEEEECC
Confidence            578999999999999999877

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=96.09  E-value=0.00024  Score=57.16  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=27.9

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEE
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV   68 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V   68 (146)
                      ....++|||+||++++++..+++ ++++  +..|...+||.+
T Consensus        11 ~~~~~vgiDiGt~~i~~~~~~~~-~~~i--~~~g~~~~ps~~   49 (377)
T 2ych_A           11 PRVEALGLEIGASALKLVEVSGN-PPAL--KALASRPTPPGL   49 (377)
T ss_dssp             CCCCCEEEEECSSEEEEEEEETT-TTEE--EEEEEEECCTTS
T ss_pred             CCCceEEEEeCCCeEEEEEEeCC-ceEE--EEEEeEECCCCc
Confidence            34578999999999999998866 6544  234555666643

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=95.62  E-value=0.0057  Score=49.89  Aligned_cols=48  Identities=17%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC------------------CeeeecHhHHHh
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK------------------GERTFGEDAQII   84 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~------------------~~~~vG~~A~~~   84 (146)
                      ....|+||+||+|+++++..+. .+..        .+||+|+...                  ...++|.+|...
T Consensus         4 ~~~~ivID~Gs~~~k~G~~~~~-~p~~--------~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~   69 (418)
T 1k8k_A            4 RLPACVVDCGTGYTKLGYAGNT-EPQF--------IIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK   69 (418)
T ss_dssp             CSCCEEEEECSSEEEEEETTCS-SCSE--------EEESCEEECC-----------CCCTTGGGCEEEGGGGTSC
T ss_pred             CCCeEEEECCCCeEEEeeCCCC-CCCC--------cCCceEEEECcccccccccccccccccccCeEEChHHHhc
Confidence            4568999999999999876544 2221        2466665432                  237899988765

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=95.58  E-value=0.0053  Score=49.55  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeE-EEEEcCCeeeecHhHHHh
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGERTFGEDAQII   84 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS-~V~f~~~~~~vG~~A~~~   84 (146)
                      ....|+||+||+|+++++...+.+.-++++--+....++ .+.+.++..++|.+|+..
T Consensus         4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~   61 (375)
T 2fxu_A            4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK   61 (375)
T ss_dssp             CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHH
T ss_pred             CCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhc
Confidence            346799999999999988755522223333222222211 122223467899999875

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=94.82  E-value=0.006  Score=48.99  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=15.4

Q ss_pred             cccCCcEEEEEcCCccEEEEE
Q psy351           25 HSYGIAVMSVDLGSEWMKVAI   45 (146)
Q Consensus        25 ~~~~~~~iGIDlGTtns~va~   45 (146)
                      .+..|..+|||+||.|++++.
T Consensus        17 ~~~~m~~igiDlG~~~tkv~~   37 (346)
T 2fsj_A           17 RGSHMVVVGLDVGYGDTKVIG   37 (346)
T ss_dssp             ----CEEEEEEECSSEEEEEC
T ss_pred             CCceeEEEEEecCCcceeEEe
Confidence            355678899999999999874

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=93.68  E-value=0.1  Score=40.91  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=16.0

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++||||||+|+++++..++
T Consensus         2 ~igiD~G~sntK~~~~~~~   20 (320)
T 2zgy_A            2 LVFIDDGSTNIKLQWQESD   20 (320)
T ss_dssp             EEEEEECSSEEEEEEECSS
T ss_pred             eEEEecCCccceEEEecCC
Confidence            6899999999999985443

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=92.13  E-value=0.027  Score=45.83  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=0.0

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceE-EEecCCCCcceeEEE---EEcCCeeeecHhHHHh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPME-IALNKESKRKTPTLV---AFHKGERTFGEDAQII   84 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~-iv~n~~~~~~~PS~V---~f~~~~~~vG~~A~~~   84 (146)
                      ...|+||+||.++++++.... .+. ++++--+....++..   .+..+..++|.+|...
T Consensus         6 ~~~ivID~Gs~~~k~G~ag~~-~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~   64 (394)
T 1k8k_B            6 RKVVVCDNGTGFVKCGYAGSN-FPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASEL   64 (394)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CCEEEEECCCCeEEEeeCCCC-CcceeccceeEEEcccccccccCCCCCCeEEChHHHhc
Confidence            467999999999999876554 332 233332332222211   1122456799988764

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=89.11  E-value=0.32  Score=37.52  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      +..+|||+|+|++++++++..
T Consensus         3 ~~~lGiD~Gst~~k~~l~d~~   23 (270)
T 1hux_A            3 IYTLGIDVGSTASKCIILKDG   23 (270)
T ss_dssp             CEEEEEEECSSEEEEEEEETT
T ss_pred             cEEEEEEeccceEEEEEEeCC
Confidence            468999999999999999864

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=88.51  E-value=0.43  Score=40.19  Aligned_cols=22  Identities=9%  Similarity=0.240  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      +..++|||+|||++++.+++..
T Consensus         3 kkYvlgID~GTss~Ka~l~d~~   24 (526)
T 3ezw_A            3 KKYIVALDQGTTSSRAVVMDHD   24 (526)
T ss_dssp             CCEEEEEEECSSEEEEEEECTT
T ss_pred             ceEEEEEEccccceeeeEEcCC
Confidence            4678999999999999999754

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=87.57  E-value=0.47  Score=39.65  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=19.5

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCC
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~   49 (146)
                      +...++|||+|||++++++++..
T Consensus         4 M~~~~lgIDiGtts~k~~l~d~~   26 (501)
T 3g25_A            4 MEKYILSIDQGTTSSRAILFNQK   26 (501)
T ss_dssp             CCCEEEEEEECSSEEEEEEECTT
T ss_pred             cccEEEEEEeCccceEEEEEcCC
Confidence            34578999999999999999754

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=86.95  E-value=0.41  Score=40.10  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||+|||++++++++..
T Consensus         5 m~~~lgIDiGTts~Ka~l~d~~   26 (482)
T 3h6e_A            5 TGATIVIDLGKTLSKVSLWDLD   26 (482)
T ss_dssp             ---CEEEEECSSEEEEEEECTT
T ss_pred             hceEEEEEcCCCCeEEEEEECC
Confidence            3478999999999999999854

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=86.68  E-value=0.56  Score=39.73  Aligned_cols=22  Identities=14%  Similarity=0.250  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||+|||++++++++..
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~   25 (554)
T 3l0q_A            4 ASYFIGVDVGTGSARAGVFDLQ   25 (554)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT
T ss_pred             CcEEEEEEECcccEEEEEECCC
Confidence            3478999999999999999854

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=86.55  E-value=0.62  Score=39.26  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=18.2

Q ss_pred             CCcEEEEEcCCccEEEEEEe
Q psy351           28 GIAVMSVDLGSEWMKVAIVS   47 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~   47 (146)
                      ...++|||+|||++++++++
T Consensus         4 ~~~~lgIDiGtts~ka~l~d   23 (515)
T 3i8b_A            4 RTLVAGVDTSTQSCKVRVTD   23 (515)
T ss_dssp             SCEEEEEEECSSEEEEEEEE
T ss_pred             CcEEEEEEeccccEEEEEEE
Confidence            45789999999999999998

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=86.45  E-value=0.53  Score=39.30  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=18.0

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         5 ~~lgIDiGtT~~k~~l~d~~   24 (503)
T 2w40_A            5 VILSIDQSTQSTKVFFYDEE   24 (503)
T ss_dssp             EEEEEEECSSEEEEEEEETT
T ss_pred             EEEEEEeCCcceEEEEECCC
Confidence            58999999999999999855

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=86.31  E-value=0.65  Score=38.88  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||+|||++++++++..
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~~   25 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDRN   25 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT
T ss_pred             CCEEEEEEcCCCceEEEEECCC
Confidence            4578999999999999999854

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=86.13  E-value=0.55  Score=39.38  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         7 ~~~lgIDiGtts~k~~l~d~~   27 (508)
T 3ifr_A            7 RQVIGLDIGTTSTIAILVRLP   27 (508)
T ss_dssp             CEEEEEEECSSEEEEEEEETT
T ss_pred             CEEEEEEecCcceEEEEECCC
Confidence            578999999999999999855

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=85.87  E-value=0.54  Score=33.43  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|+..+-+|+.++.
T Consensus         3 mriLGiDpG~~riGvAv~d~~   23 (150)
T 1vhx_A            3 LRILGLDLGTKTLGVALSDEM   23 (150)
T ss_dssp             EEEEEEEECSSEEEEEEECTT
T ss_pred             CEEEEEEccCCEEEEEEEECC
Confidence            579999999999999999864

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=85.59  E-value=0.63  Score=38.99  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         4 ~~~lgIDiGtts~K~~l~d~~   24 (504)
T 3ll3_A            4 KYIIGMDVGTTATKGVLYDIN   24 (504)
T ss_dssp             EEEEEEEECSSEEEEEEEETT
T ss_pred             CEEEEEEecCCceEEEEEcCC
Confidence            368999999999999999855

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=85.53  E-value=0.69  Score=39.05  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||+|||++++.+++..
T Consensus         9 ~~~~lgID~GTts~Ka~l~d~~   30 (538)
T 4bc3_A            9 RRCCLGWDFSTQQVKVVAVDAE   30 (538)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT
T ss_pred             CCEEEEEEEcCcCEEEEEECCC
Confidence            3578999999999999999854

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=85.25  E-value=0.88  Score=38.29  Aligned_cols=21  Identities=10%  Similarity=0.241  Sum_probs=18.5

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus        26 ~~~lgIDiGtts~k~~l~d~~   46 (520)
T 4e1j_A           26 GYILAIDQGTTSTRAIVFDGN   46 (520)
T ss_dssp             CEEEEEEECSSEEEEEEECTT
T ss_pred             CeEEEEEeCCcceEEEEECCC
Confidence            368999999999999999754

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=84.74  E-value=0.78  Score=38.23  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         3 ~~~lgiDiGtt~~k~~l~d~~   23 (497)
T 2zf5_O            3 KFVLSLDEGTTSARAIIFDRE   23 (497)
T ss_dssp             CEEEEEEECSSEEEEEEECTT
T ss_pred             cEEEEEecCCchhEEEEECCC
Confidence            368999999999999999754

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=84.68  E-value=0.76  Score=38.54  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++|||+|||++++++++..
T Consensus         5 ~~~lgIDiGtts~k~~l~d~~   25 (511)
T 3hz6_A            5 FYIATFDIGTTEVKAALADRD   25 (511)
T ss_dssp             CEEEEEEECSSEEEEEEECTT
T ss_pred             cEEEEEEeCCCceEEEEECCC
Confidence            478999999999999999754

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=84.41  E-value=1.1  Score=32.14  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCccEEEEEEe-CCCceEEE
Q psy351           29 IAVMSVDLGSEWMKVAIVS-PGVPMEIA   55 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~-~~~~~~iv   55 (146)
                      |.++|||.|++++-+++.+ +|++.+.+
T Consensus         1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v   28 (158)
T 1hjr_A            1 AIILGIDPGSRVTGYGVIRQVGRQLSYL   28 (158)
T ss_dssp             CEEEEEECCSSEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEccCCCCeeEEEEEecCCeEEEE
Confidence            4689999999999999986 34345444

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=84.29  E-value=0.78  Score=38.21  Aligned_cols=20  Identities=10%  Similarity=0.250  Sum_probs=17.9

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         3 ~~lgiDiGtT~~k~~l~d~~   22 (495)
T 2dpn_A            3 FLLALDQGTTSSRAILFTLE   22 (495)
T ss_dssp             CEEEEEECSSEEEEEEECTT
T ss_pred             EEEEEeeCCcceEEEEECCC
Confidence            57999999999999999754

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=84.26  E-value=0.85  Score=30.16  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|+..+-||+.++.
T Consensus         1 mriLglD~G~kriGvAvsd~~   21 (98)
T 1iv0_A            1 MRVGALDVGEARIGLAVGEEG   21 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSC
T ss_pred             CcEEEEEeCCCEEEEEEEeCC
Confidence            358999999999999998865

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=84.17  E-value=0.63  Score=38.59  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             CcEEEEEcCCccEEEEEEeC
Q psy351           29 IAVMSVDLGSEWMKVAIVSP   48 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~   48 (146)
                      ..++|||+|||++++++++.
T Consensus         4 ~~~lgiDiGtts~k~~l~d~   23 (489)
T 2uyt_A            4 RNCVAVDLGASSGRVMLARY   23 (489)
T ss_dssp             EEEEEEEECSSEEEEEEEEE
T ss_pred             ceEEEEEecCCCceEEEEEe
Confidence            35899999999999999874

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=83.97  E-value=0.82  Score=35.52  Aligned_cols=20  Identities=10%  Similarity=0.353  Sum_probs=18.7

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      +.++||.|+||+++++++++
T Consensus         3 MlL~IDIGNT~iK~gl~d~~   22 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDGD   22 (266)
T ss_dssp             CEEEEEECSSEEEEEEEETT
T ss_pred             eEEEEEECCCeEEEEEEECC
Confidence            68999999999999999987

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=82.78  E-value=1  Score=38.09  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             cCCcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcC----CeeeecHhH
Q psy351           27 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----GERTFGEDA   81 (146)
Q Consensus        27 ~~~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~----~~~~vG~~A   81 (146)
                      .....|+||+||.++++.+...+ .+.        ...||+|+...    +..++|.+|
T Consensus        21 de~~~iVID~GS~~~kaG~ag~~-~P~--------~v~PSvVg~~~~~~~~~~~vG~e~   70 (498)
T 3qb0_A           21 DEVSAVVIDPGSYTTNIGYSGSD-FPQ--------SILPSVYGKYTADEGNKKIFSEQS   70 (498)
T ss_dssp             CCBSCEEEECCSSEEEEEETTCS-SCS--------EEEESEEEEESSCSSCCEECCTTG
T ss_pred             CCCCeEEEECCCcEEEEEECCCC-Cee--------eecCceeEEeccCCCccEEEecHH
Confidence            34568999999999998875444 222        23589988742    356899864

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=82.68  E-value=0.99  Score=37.40  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=17.0

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||+|||++++++++..
T Consensus         2 ~lgiDiGtt~~k~~l~d~~   20 (484)
T 2itm_A            2 YIGIDLGTSGVKVILLNEQ   20 (484)
T ss_dssp             EEEEEECSSEEEEEEECTT
T ss_pred             EEEEEecCcccEEEEECCC
Confidence            6899999999999999754

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=81.59  E-value=1.2  Score=37.18  Aligned_cols=20  Identities=15%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||++++++++..
T Consensus         3 ~~lgiDiGtts~k~~l~d~~   22 (504)
T 2d4w_A            3 YVLAIDQGTTSSRAIVFDHS   22 (504)
T ss_dssp             EEEEEEECSSEEEEEEECTT
T ss_pred             EEEEEecCCcceEEEEECCC
Confidence            57999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1bupa1	185	c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas	5e-21
d1dkgd1	183	c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas	4e-16

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (202), Expect = 5e-21
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 90
            + +DLGS +  V +   G   EI  N +  R TP+ VAF   ER  G+ A+      P+
Sbjct: 3   AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61

Query: 91  NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
           N+      L+G+  D  VVQ     +P+  +         V    + + ++ EE+ 
Sbjct: 62  NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 68.9 bits (168), Expect = 4e-16
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 31  VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 89
           ++ +DLG+    VAI+    P  +  N E  R TP+++A+ + GE   G+ A+      P
Sbjct: 2   IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60

Query: 90  SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV 146
            N+      L+G+      VQ   S  P+   +   + G    +    +     ++ 
Sbjct: 61  QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQIS 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.94
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	99.93
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	98.79
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	95.28
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	93.45
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	93.27
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	92.51
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	90.76
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	90.57
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	90.48
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	90.46
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	89.92
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	88.73
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	88.72
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	87.63
d2fsja2	164	Hypothetical protein Ta0583 {Archaeon Thermoplasma	87.36
d1vhxa_	140	Hypothetical protein YrrK (RuvX) {Bacillus subtili	85.38
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	85.33
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	84.83
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	83.91
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	82.27

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.3e-27  Score=175.44  Aligned_cols=115  Identities=27%  Similarity=0.403  Sum_probs=101.2

Q ss_pred             CcEEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEcCCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChh
Q psy351           29 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV  108 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~  108 (146)
                      +.+||||||||||+||++++| +++++.|++|+|.+||+|+|.++++.+|..|+.++.++|+++++++|||||++++|+.
T Consensus         1 g~vvGIDfGTt~s~va~~~~g-~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~   79 (185)
T d1bupa1           1 GPAVGIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV   79 (185)
T ss_dssp             CCCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHH
T ss_pred             CCEEEEEcChhcEEEEEEECC-EEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHH
Confidence            468999999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCcceEEeecCCCCceEEEE-cCCcEEEeeeee
Q psy351          109 VQLFKSRFPYYDIVADEERGTIVFK-TNDNELYHVEEL  145 (146)
Q Consensus       109 v~~~~~~~p~~~v~~d~~~g~~~~~-~~~~~~~speev  145 (146)
                      ++...+.+|+.++..++ +....+. .++.+.|+||||
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~el  116 (185)
T d1bupa1          80 VQSDMKHWPFMVVNDAG-RPKVQVEYKGETKSFYPEEV  116 (185)
T ss_dssp             HHHHHTTCSSEEEEETT-EEEEEEEETTEEEEECHHHH
T ss_pred             HHHHhhcCCceEEcCCC-CccEEEEEcCCceEEcHHHH
Confidence            99999999998765433 4444443 345578999987

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.93  E-value=2.6e-26  Score=170.26  Aligned_cols=112  Identities=24%  Similarity=0.348  Sum_probs=100.7

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc-CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCChhh
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV  109 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~-~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~~v  109 (146)
                      +||||||||||+||++.++ ++++++|++|+|.+||+++|. ++++++|..|++++.++|+++++++|||||++++|+.+
T Consensus         2 VvGIDfGTt~s~va~~~~~-~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~   80 (183)
T d1dkgd1           2 IIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV   80 (183)
T ss_dssp             CCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred             EEEEEcChhcEEEEEEECC-EEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence            6899999999999999988 899999999999999999996 46899999999999999999999999999999999999


Q ss_pred             hhhccCcceEEeecCCCCceEEEEcCCcEEEeeeeeC
Q psy351          110 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELV  146 (146)
Q Consensus       110 ~~~~~~~p~~~v~~d~~~g~~~~~~~~~~~~speev~  146 (146)
                      +...+.+||+++..  ++|...+..+ ++.|+||||+
T Consensus        81 ~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~s~~~l~  114 (183)
T d1dkgd1          81 QRDVSIMPFKIIAA--DNGDAWVEVK-GQKMAPPQIS  114 (183)
T ss_dssp             HHHTTTCSSEEEEC--SSSBEEEEET-TEEECHHHHH
T ss_pred             HhhhhcCCEEEEEc--CCCcEEEEEC-CEEECHHHHH
Confidence            99999999987653  3677777765 4789999873

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=1.6e-09  Score=75.04  Aligned_cols=70  Identities=21%  Similarity=0.283  Sum_probs=46.8

Q ss_pred             EEEEEcCCccEEEEEEeCCCceEEEecCCCCcceeEEEEEc---CCeeeecHhHHHhhhcCCCCeeecchhhccCCCCCh
Q psy351           31 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP  107 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~~~~~iv~n~~~~~~~PS~V~f~---~~~~~vG~~A~~~~~~~p~~~i~~~KrliG~~~~d~  107 (146)
                      .||||||||||+||+..++    ++.++      |+.+++.   +....+|.+|++...++|.+ +...|++.+..+.+.
T Consensus         2 ~iGIDlGTtns~va~~~~~----~v~~~------~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~-~~~~k~~~~~~~~~~   70 (137)
T d1jcea1           2 DIGIDLGTANTLVFLRGKG----IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGKTPAT-IKAIRPMRDGVIADY   70 (137)
T ss_dssp             EEEEEECSSEEEEEETTTE----EEEEE------ESCEEEETTTCCEEEESHHHHTTTTCCCTT-EEEECCEETTEESSH
T ss_pred             eEEEEcChhhEEEEEeCCC----EEeec------CCcceEecCCCeEEEEehHHhhhhhhcccc-ceeEEeccCCccCcH
Confidence            6999999999999875444    33343      5666553   33556777777776666555 456778777777665


Q ss_pred             hhhh
Q psy351          108 VVQL  111 (146)
Q Consensus       108 ~v~~  111 (146)
                      ...+
T Consensus        71 ~~~~   74 (137)
T d1jcea1          71 TVAL   74 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.28  E-value=0.0062  Score=43.52  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      +|.+||||+|.|++.+++++.+
T Consensus         1 ~M~~lGIDiGGT~~k~~vvd~~   22 (259)
T d1huxa_           1 SIYTLGIDVGSTASKCIILKDG   22 (259)
T ss_dssp             CCEEEEEEECSSEEEEEEEETT
T ss_pred             CcEEEEEEeCcceEEEEEEcCC
Confidence            5889999999999999999876

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=93.27  E-value=0.047  Score=34.78  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=19.3

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ...++|||.|+|++++++++..
T Consensus         3 m~y~lGID~GGT~tk~~l~d~~   24 (114)
T d1zc6a1           3 IRYLIGVDGGGTGTRIRLHASD   24 (114)
T ss_dssp             CCEEEEEEECSSCEEEEEEETT
T ss_pred             ccEEEEEEcCcceEEEEEEcCC
Confidence            4578999999999999999765

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.058  Score=34.59  Aligned_cols=21  Identities=14%  Similarity=0.518  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|.|+..+++++..
T Consensus         1 M~~lgiDiGgT~i~~~l~d~~   21 (119)
T d2aa4a1           1 MTTLAIDIGGTKLAAALIGAD   21 (119)
T ss_dssp             CCEEEEEECSSEEEEEEECTT
T ss_pred             CeEEEEEeCcCEEEEEEEcCC
Confidence            578999999999999999754

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.76  E-value=0.12  Score=32.79  Aligned_cols=20  Identities=10%  Similarity=0.282  Sum_probs=17.6

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      +++|||+|.|++.+++.+..
T Consensus         1 MyiGiDiGgT~i~~~l~d~~   20 (117)
T d2ap1a2           1 MYYGFDIGGTKIALGVFDST   20 (117)
T ss_dssp             EEEEEEECSSEEEEEEEETT
T ss_pred             CEEEEEECcceEEEEEEeCC
Confidence            35999999999999999765

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=90.57  E-value=0.16  Score=32.48  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCccEEEEEEeC
Q psy351           29 IAVMSVDLGSEWMKVAIVSP   48 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~   48 (146)
                      ..+||||+|.|++.+++++.
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~   21 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDL   21 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEET
T ss_pred             CCEEEEEECcceEEEEEEEC
Confidence            57899999999999999974

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.48  E-value=0.1  Score=33.43  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|.|+.++++.+..
T Consensus         1 M~i~~iDiGgT~i~~~l~d~~   21 (114)
T d2gupa1           1 MTIATIDIGGTGIKFASLTPD   21 (114)
T ss_dssp             CCEEEEEEETTEEEEEEECTT
T ss_pred             CeEEEEEeCcccEEEEEEcCC
Confidence            578999999999999999754

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=90.46  E-value=0.039  Score=40.08  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=17.5

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      .++|||+|||+.++++++..
T Consensus         2 yvlgiDiGTtsvKa~l~D~~   21 (252)
T d1r59o1           2 YVMAIDQGTTSSRAIIFDRN   21 (252)
T ss_dssp             EEEEEBCCSSBCBCCEECSS
T ss_pred             EEEEEEecccceeeeEEeCC
Confidence            47899999999999999754

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.14  Score=32.20  Aligned_cols=21  Identities=14%  Similarity=0.185  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      ..++++|+|.||+.+|+++.+
T Consensus         2 ~~~L~~DIGGTn~r~alv~~~   22 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDIA   22 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEETT
T ss_pred             cEEEEEEECchhEEEEEEEcC
Confidence            568999999999999999865

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=88.73  E-value=0.38  Score=30.22  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCccEEEEEEeCC
Q psy351           29 IAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        29 ~~~iGIDlGTtns~va~~~~~   49 (146)
                      |.++|||+|+..+-+|+-++.
T Consensus         1 MriLglD~G~kriGiAisd~~   21 (98)
T d1iv0a_           1 MRVGALDVGEARIGLAVGEEG   21 (98)
T ss_dssp             CCEEEEEESSSEEEEEEECSC
T ss_pred             CcEEEEEcCCCEEEEEEecCC
Confidence            568999999999999998765

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.72  E-value=0.14  Score=35.83  Aligned_cols=19  Identities=16%  Similarity=0.319  Sum_probs=17.3

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      .||||+|.|++++++++++
T Consensus         2 kiGIDiGGT~ik~~lvd~~   20 (267)
T d2ewsa1           2 KVGIDAGGTLIKIVQEQDN   20 (267)
T ss_dssp             EEEEEECSSEEEEEEECSS
T ss_pred             EEEEEEChhhEEEEEEeCC
Confidence            3899999999999999876

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.68  Score=31.36  Aligned_cols=20  Identities=20%  Similarity=0.227  Sum_probs=17.1

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      ++||||.|..|+++|...++
T Consensus         1 m~I~iD~Gy~nvK~a~~~~~   20 (157)
T d2zgya1           1 MLVFIDDGSTNIKLQWQESD   20 (157)
T ss_dssp             CEEEEEECSSEEEEEEECSS
T ss_pred             CEEEEecCCCcEEEEEecCC
Confidence            47999999999999977654

>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ta0583-like
domain: Hypothetical protein Ta0583
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.36  E-value=0.15  Score=34.46  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=14.1

Q ss_pred             CcEEEEEcCCccEEEE
Q psy351           29 IAVMSVDLGSEWMKVA   44 (146)
Q Consensus        29 ~~~iGIDlGTtns~va   44 (146)
                      |.++|||+|..+++++
T Consensus         1 m~iigiD~G~g~tK~~   16 (164)
T d2fsja2           1 MVVVGLDVGYGDTKVI   16 (164)
T ss_dssp             CEEEEEEECSSEEEEE
T ss_pred             CEEEEEEcCCcceEEE
Confidence            5689999999999975

>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YrrK (RuvX)
species: Bacillus subtilis [TaxId: 1423]

Probab=85.38  E-value=0.28  Score=32.82  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      +|.++|||+|+..+-+|+.++.
T Consensus         1 ~mriLgiD~G~kriGvAisd~~   22 (140)
T d1vhxa_           1 SLRILGLDLGTKTLGVALSDEM   22 (140)
T ss_dssp             CEEEEEEEECSSEEEEEEECTT
T ss_pred             CceEEEEEeCCCEEEEEEecCC
Confidence            4679999999999999987655

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=85.33  E-value=0.47  Score=29.90  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=17.7

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      +.+-||.|+|++++|+++++
T Consensus         1 M~L~IDIGNT~ik~~l~~~~   20 (118)
T d3bexa1           1 MYLLVDVGNTHSVFSITEDG   20 (118)
T ss_dssp             EEEEEEECSSEEEEEEESSS
T ss_pred             CEEEEEECCCeEEEEEEECC
Confidence            35789999999999999877

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=0.41  Score=31.86  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCccEEEEEEeCC
Q psy351           28 GIAVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        28 ~~~~iGIDlGTtns~va~~~~~   49 (146)
                      ++.++|||+|+-.+-+|+.++.
T Consensus         2 ~griLgiD~G~kriGvAvsd~~   23 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRI   23 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETT
T ss_pred             CCcEEEEEeCCCEEEEEEeCCC
Confidence            5789999999999999998866

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.91  E-value=0.72  Score=28.87  Aligned_cols=20  Identities=15%  Similarity=0.421  Sum_probs=17.7

Q ss_pred             cEEEEEcCCccEEEEEEeCC
Q psy351           30 AVMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        30 ~~iGIDlGTtns~va~~~~~   49 (146)
                      +.+-||.|+|++++++.+++
T Consensus         1 M~LliDiGNT~iK~~~~~~~   20 (114)
T d2f9wa2           1 MILELDCGNSLIKWRVIEGA   20 (114)
T ss_dssp             EEEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEECCCeEEEEEEECC
Confidence            35789999999999999877

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=82.27  E-value=0.63  Score=29.29  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=17.1

Q ss_pred             EEEEEcCCccEEEEEEeCC
Q psy351           31 VMSVDLGSEWMKVAIVSPG   49 (146)
Q Consensus        31 ~iGIDlGTtns~va~~~~~   49 (146)
                      ++|||+|.|+..+++.+..
T Consensus         2 ~~giDiGgT~i~~~l~d~~   20 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGRED   20 (118)
T ss_dssp             EEEEEECSSEEEEEEECTT
T ss_pred             EEEEEeccCEEEEEEEcCC
Confidence            6899999999999999854