Psyllid ID: psy3528

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQYKPLR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEccEEEEEEccccEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVvtggkydvdvsieaptKEIIYRQVKSQFDTHQFVTLVEGTYVVCfsnefstysHKVVYmdfqvgdepqlpgvgeHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFasrnerqykplr
Flexible Loop (DISEMBL)
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFqvvtggkydvdvSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNffasrnerqykplr
Low Complexity Region (SEG)
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQYKPLR
Disordered region (IsUnstruct)
****ISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVM***********KSLNTIIDYQTHHRL**********DLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA***********
Disordered Region (DISOPRED)
*********KKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ*KSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPG********TQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFAS**********
Disordered Region (DISEMBL)
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRN********
Disordered Region (DISPRO)
*NLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQYKPLR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9Y3B3	224	Transmembrane emp24 domai	yes	N/A	0.834	0.812	0.532	3e-56
D3ZTX0	226	Transmembrane emp24 domai	yes	N/A	0.825	0.796	0.533	8e-56
Q6AY25	221	Transmembrane emp24 domai	no	N/A	0.844	0.832	0.535	1e-54
Q78IS1	221	Transmembrane emp24 domai	no	N/A	0.853	0.841	0.518	4e-54
Q9Y3Q3	217	Transmembrane emp24 domai	no	N/A	0.834	0.838	0.530	2e-53
Q769F9	205	Transmembrane emp24 domai	yes	N/A	0.802	0.853	0.301	9e-21
Q54BN0	209	Transmembrane emp24 domai	no	N/A	0.894	0.933	0.289	2e-20
O13770	210	Uncharacterized membrane	yes	N/A	0.880	0.914	0.315	5e-20
Q9R0Q3	201	Transmembrane emp24 domai	no	N/A	0.784	0.850	0.308	6e-19
Q63524	201	Transmembrane emp24 domai	no	N/A	0.784	0.850	0.308	7e-19

>sp|Q9Y3B3|TMED7_HUMAN Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 134/182 (73%)

Query: 28  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
           A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+
Sbjct: 34  ASEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93

Query: 88  DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQE 147
           D+  F     GTY  CFSNEFST++HK VY DFQVG++P L      V+ +TQMES+   
Sbjct: 94  DSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVS 153

Query: 148 IHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 207
           IH++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E +++L+ S  QV+++K+FF+
Sbjct: 154 IHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 213

Query: 208 SR 209
            +
Sbjct: 214 DK 215

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Appears to play a role in the biosynthesis of secreted cargo including processing and post-translational modifications.
Homo sapiens (taxid: 9606)

>sp|D3ZTX0|TMED7_RAT Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1

 Score =  216 bits (551), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 133/180 (73%)

Query: 30  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDT 89
           E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+D+
Sbjct: 38  EITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDS 97

Query: 90  HQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIH 149
             F     GTY  CFSNEFST++HK VY DFQVG++P L      V+ +TQMES+   IH
Sbjct: 98  FTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSIH 157

Query: 150 KSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 209
           ++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E +++L+ S  QV+++K+FF+ +
Sbjct: 158 EALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDK 217

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Appears to play a role in the biosynthesis of secreted cargo including processing and post-translational modifications.

Rattus norvegicus (taxid: 10116)

>sp|Q6AY25|TMED3_RAT Transmembrane emp24 domain-containing protein 3 OS=Rattus norvegicus GN=Tmed3 PE=1 SV=1

 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 132/185 (71%), Gaps = 1/185 (0%)

Query: 26  VQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKS 85
           ++  ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   IIYR+ K 
Sbjct: 28  LRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPMGNIIYRETKK 87

Query: 86  QFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHVTVMTQMESS 144
           Q+D+  + T V+G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  VT +TQMES+
Sbjct: 88  QYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESA 147

Query: 145 TQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKN 204
              IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S  QV ++K+
Sbjct: 148 CVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKS 207

Query: 205 FFASR 209
           FF  +
Sbjct: 208 FFTEK 212

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|Q78IS1|TMED3_MOUSE Transmembrane emp24 domain-containing protein 3 OS=Mus musculus GN=Tmed3 PE=2 SV=1

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 133/187 (71%), Gaps = 1/187 (0%)

Query: 24  QIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQV 83
           + +++ ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   +IYR+ 
Sbjct: 26  EPLRSAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPRGNVIYRET 85

Query: 84  KSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHVTVMTQME 142
           K Q+D+  + T  +G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  VT +TQME
Sbjct: 86  KKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQME 145

Query: 143 SSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIV 202
           S+   IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S  QV ++
Sbjct: 146 SACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLL 205

Query: 203 KNFFASR 209
           K+FF  +
Sbjct: 206 KSFFTEK 212

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q9Y3Q3|TMED3_HUMAN Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=1 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/183 (53%), Positives = 128/183 (69%), Gaps = 1/183 (0%)

Query: 28  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
             ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P    IYR+ K Q+
Sbjct: 26  GAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQY 85

Query: 88  DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHVTVMTQMESSTQ 146
           D+  +   V+G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  VT +TQMES+  
Sbjct: 86  DSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACV 145

Query: 147 EIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFF 206
            IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S  QV ++K+FF
Sbjct: 146 TIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFF 205

Query: 207 ASR 209
             +
Sbjct: 206 TEK 208

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1

 Score =  100 bits (248), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 1/176 (0%)

Query: 31  LTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTH 90
            +F+++    EC +E+I  + S    FQV+ GG  D+D +I +P K I+Y   +    T 
Sbjct: 25  FSFKVSAKVEECIYEEIGVDLSFTAMFQVIQGGFNDIDFTIISPDKRIVYSGQRESEGTK 84

Query: 91  QFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHK 150
              +   G Y  CFSN+ S+ + K V     VG+   +  + +    +T +E S   +  
Sbjct: 85  TLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKD-LTPIERSIMTLSD 143

Query: 151 SLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFF 206
            +  + + Q + ++REA  R  AE  N RV+WWS  E  V++  S  Q+Y ++ FF
Sbjct: 144 GVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLIALSIWQIYYLRRFF 199

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54BN0|TMEDB_DICDI Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 9/204 (4%)

Query: 12  QWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSI 71
           Q I    L+ L  I  +  LT ++   ++ECF+  I+   + +L +QV+ GG  D++V +
Sbjct: 6   QLINICILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKL 65

Query: 72  EAPTKEIIYRQVKSQFDT-----HQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEP 126
             P    I+ ++   FDT       F     G Y VCF+NE S ++ KVV   +   +E 
Sbjct: 66  TDPKGNTIFERL--HFDTQMKGKQSFTAGESGAYKVCFNNEMSRFTAKVVTFTW-ASEEE 122

Query: 127 QLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSI 186
            +  V +  ++ T M+ S Q+I + L ++I  Q   R RE   R  +E  N RV+WW+  
Sbjct: 123 GVKEVAKGDSI-TPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIA 181

Query: 187 EFVVVLLASTLQVYIVKNFFASRN 210
           E +V+++    Q++ ++ +F +++
Sbjct: 182 EVIVLVVMGVGQIWYLRKWFDNKS 205

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|O13770|YE98_SCHPO Uncharacterized membrane protein C17A5.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.08 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 8/200 (4%)

Query: 19  LLILHQIVQAVELTFELADNARECFFED-IKRNTSVILEFQVVTGGKYDVDVSIEAPT-K 76
           L +L  +  A+ELTF+L +  ++C++ D           + V +GG +DVD  I+AP+ K
Sbjct: 11  LFLLASLASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQK 70

Query: 77  EIIYRQVKSQFDTHQFVTLVE-GTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHV 135
            +   + + Q D   F TL E G Y  CF N  ST++ K+V M+  + +E  LP +    
Sbjct: 71  TVALGKKRRQADV--FFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDE 128

Query: 136 TV---MTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVL 192
                   M+S+  EI  +L+ I   Q + + RE +     +    R+ W+S  E ++V+
Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVV 188

Query: 193 LASTLQVYIVKNFFASRNER 212
             S LQV+IVK FF     R
Sbjct: 189 ALSALQVFIVKTFFKRSGRR 208

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 38  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 97
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87

Query: 98  GTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIID 157
           GTY  CFSN  ST + K+V     +G+ P+   + E      ++E    E+  ++  +  
Sbjct: 88  GTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDM-ETEAHQNKLEEMINELAVAMTAVKH 146

Query: 158 YQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 209
            Q +  +RE   R   ++ N RV+ WS  E +V++  +  Q+Y +K FF  R
Sbjct: 147 EQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVR 198

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)

Query: 38  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 97
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87

Query: 98  GTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIID 157
           GTY  CFSN  ST + K+V     +G+ P+   + E      ++E    E+  ++  +  
Sbjct: 88  GTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDM-ETEAHQNKLEEMINELAVAMTAVKH 146

Query: 158 YQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 209
            Q +  +RE   R   ++ N RV+ WS  E +V++  +  Q+Y +K FF  R
Sbjct: 147 EQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVR 198

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
332030699	209	Transmembrane emp24 domain-containing pr	0.866	0.904	0.698	6e-77
170047167	216	transmembrane emp24 domain-containing pr	0.944	0.953	0.631	8e-77
94469222	219	membrane trafficking protein emp24/gp25/	0.912	0.908	0.656	5e-76
157130343	219	integral membrane protein, Tmp21-I (p23)	0.912	0.908	0.656	6e-76
322795430	227	hypothetical protein SINV_05458 [Solenop	0.853	0.819	0.704	8e-76
118779227	224	AGAP000949-PA [Anopheles gambiae str. PE	0.885	0.861	0.646	2e-74
189241532	209	PREDICTED: similar to integral membrane	0.926	0.966	0.638	1e-73
242016979	212	transmembrane emp24 domain-containing pr	0.949	0.976	0.619	4e-73
193683384	216	PREDICTED: transmembrane emp24 domain-co	0.917	0.925	0.625	6e-73
307180200	205	Transmembrane emp24 domain-containing pr	0.825	0.878	0.684	2e-71

>gi|332030699|gb|EGI70376.1| Transmembrane emp24 domain-containing protein 7 [Acromyrmex echinatior]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 160/189 (84%)

Query: 25  IVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVK 84
           +   VELTFELADNA+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIY QVK
Sbjct: 19  LTDGVELTFELADNAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYSQVK 78

Query: 85  SQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESS 144
           +QFD+H F+  + G Y  CFSNEFSTYSHK+VYMDFQVGDE  LPG+GEHVTVMTQMESS
Sbjct: 79  TQFDSHSFIPTISGIYKACFSNEFSTYSHKLVYMDFQVGDELPLPGLGEHVTVMTQMESS 138

Query: 145 TQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKN 204
            QE+HK+L +I+DYQTHHRLREAQGRKRAE+LNERV+WWS +E V +LL +  QV+I+KN
Sbjct: 139 AQEVHKNLISILDYQTHHRLREAQGRKRAEELNERVLWWSVMETVCILLIAVGQVFILKN 198

Query: 205 FFASRNERQ 213
           FF  R+  Q
Sbjct: 199 FFTDRSPSQ 207

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047167|ref|XP_001851105.1| transmembrane emp24 domain-containing protein 7 [Culex quinquefasciatus] gi|167869668|gb|EDS33051.1| transmembrane emp24 domain-containing protein 7 [Culex quinquefasciatus]

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 132/209 (63%), Positives = 165/209 (78%), Gaps = 3/209 (1%)

Query: 8   LLKKQWIGFFFLLILHQ---IVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGK 64
           +++K   G F LL       +VQ+VEL+FEL DNARECF+E+IK+N +  LE+QVVTGG+
Sbjct: 1   MMEKLASGIFLLLFFGGPRILVQSVELSFELPDNARECFYEEIKKNQTATLEYQVVTGGQ 60

Query: 65  YDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGD 124
           YDVDV +E PTKEI+YRQ+K+QFD+HQF     G Y  CFSNEFST+SHK++YMDFQVGD
Sbjct: 61  YDVDVVLEGPTKEILYRQIKTQFDSHQFTAQATGVYAACFSNEFSTFSHKLIYMDFQVGD 120

Query: 125 EPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWS 184
           E  LPG+ EH TV+TQ+E+S+QEIHKSLN I+DYQTHHRLREAQGRKRAEDLNERV+WWS
Sbjct: 121 EQPLPGIDEHATVLTQLEASSQEIHKSLNAILDYQTHHRLREAQGRKRAEDLNERVLWWS 180

Query: 185 SIEFVVVLLASTLQVYIVKNFFASRNERQ 213
             E + VL  +  QV I++NFF+ +   Q
Sbjct: 181 LTETIAVLTIAVGQVIILRNFFSEKKPSQ 209

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469222|gb|ABF18460.1| membrane trafficking protein emp24/gp25/p24 family member [Aedes aegypti]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 160/201 (79%), Gaps = 2/201 (0%)

Query: 15  GFFFLLIL--HQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIE 72
           G F L  L     V +VELTFEL DNARECFFE+IK+N +  LEFQVVTGG+YDVDV + 
Sbjct: 12  GVFLLAFLGHRSAVNSVELTFELPDNARECFFEEIKKNQTATLEFQVVTGGQYDVDVQLV 71

Query: 73  APTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVG 132
           +PT+EI+Y+QVK+QFD+HQF     G Y  CFSNEFST+SHK++YMDFQVGDE  LPGV 
Sbjct: 72  SPTQEILYKQVKTQFDSHQFTAQATGVYAACFSNEFSTFSHKLIYMDFQVGDEQPLPGVD 131

Query: 133 EHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVL 192
           EH TV+TQ+ESS+QEIHKSLN I+DYQTHHRLREAQGRKRAEDLNERV+WWS  E V +L
Sbjct: 132 EHATVLTQLESSSQEIHKSLNAILDYQTHHRLREAQGRKRAEDLNERVLWWSLTETVAIL 191

Query: 193 LASTLQVYIVKNFFASRNERQ 213
           + +  QV +++NFF+ +   Q
Sbjct: 192 VIAVGQVIVLRNFFSEKKPSQ 212

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130343|ref|XP_001655671.1| integral membrane protein, Tmp21-I (p23), putative [Aedes aegypti] gi|157130345|ref|XP_001655672.1| integral membrane protein, Tmp21-I (p23), putative [Aedes aegypti] gi|108871923|gb|EAT36148.1| AAEL011755-PA [Aedes aegypti] gi|108871924|gb|EAT36149.1| AAEL011755-PB [Aedes aegypti]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 160/201 (79%), Gaps = 2/201 (0%)

Query: 15  GFFFLLIL--HQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIE 72
           G F L  L     V +VELTFEL DNARECFFE+IK+N +  LEFQVVTGG+YDVDV + 
Sbjct: 12  GVFLLAFLGHRSAVNSVELTFELPDNARECFFEEIKKNQTATLEFQVVTGGQYDVDVQLV 71

Query: 73  APTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVG 132
           +PT+EI+Y+QVK+QFD+HQF     G Y  CFSNEFST+SHK++YMDFQVGDE  LPGV 
Sbjct: 72  SPTQEILYKQVKTQFDSHQFTAQATGIYAACFSNEFSTFSHKLIYMDFQVGDEQPLPGVD 131

Query: 133 EHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVL 192
           EH TV+TQ+ESS+QEIHKSLN I+DYQTHHRLREAQGRKRAEDLNERV+WWS  E V +L
Sbjct: 132 EHATVLTQLESSSQEIHKSLNAILDYQTHHRLREAQGRKRAEDLNERVLWWSLTETVAIL 191

Query: 193 LASTLQVYIVKNFFASRNERQ 213
           + +  QV +++NFF+ +   Q
Sbjct: 192 VIAVGQVIVLRNFFSEKKPSQ 212

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795430|gb|EFZ18187.1| hypothetical protein SINV_05458 [Solenopsis invicta]

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 131/186 (70%), Positives = 158/186 (84%)

Query: 28  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
            VELTFELADNA+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIY QVK+QF
Sbjct: 40  GVELTFELADNAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYSQVKTQF 99

Query: 88  DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQE 147
           D+H F+  + G Y  CFSNEFSTYSHK+VYMDFQVGDE  LPG+GEHVTVMTQMESS QE
Sbjct: 100 DSHSFIPTMSGIYKACFSNEFSTYSHKLVYMDFQVGDELPLPGLGEHVTVMTQMESSAQE 159

Query: 148 IHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 207
           +HK+L +I+DYQTHHRLREAQGRKRAE+LNERV+WWS +E   +LL +  QV+I+KNFF 
Sbjct: 160 VHKNLISILDYQTHHRLREAQGRKRAEELNERVLWWSVMETGCILLIAVGQVFILKNFFT 219

Query: 208 SRNERQ 213
            R+  Q
Sbjct: 220 DRSPSQ 225

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118779227|ref|XP_309138.3| AGAP000949-PA [Anopheles gambiae str. PEST] gi|116131830|gb|EAA04928.3| AGAP000949-PA [Anopheles gambiae str. PEST]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 158/195 (81%), Gaps = 2/195 (1%)

Query: 21  ILHQI--VQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI 78
           + HQI   Q VELTFEL DNA+ECF E+I++N +  LEFQVV+GG+YDVDV++E+PT E+
Sbjct: 23  LCHQIPVAQCVELTFELPDNAKECFHEEIQKNQTAALEFQVVSGGRYDVDVTLESPTGEV 82

Query: 79  IYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVM 138
           IYRQ+K+QFD++QFV    G YV CFSNEFST+SHK+VYMDFQVG+E  LPG+ EH TV+
Sbjct: 83  IYRQIKTQFDSYQFVAAATGIYVACFSNEFSTFSHKIVYMDFQVGEEAPLPGIEEHATVL 142

Query: 139 TQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQ 198
           TQ+E+S QEIHK LN I+DYQTHHRLREAQGRKRAEDLNERV+WWS  E   +LL +  Q
Sbjct: 143 TQLETSAQEIHKGLNAILDYQTHHRLREAQGRKRAEDLNERVLWWSLTETAAILLIAIGQ 202

Query: 199 VYIVKNFFASRNERQ 213
           V +++NFF+ +   Q
Sbjct: 203 VLVLRNFFSEKKPSQ 217

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241532|ref|XP_969755.2| PREDICTED: similar to integral membrane protein, Tmp21-I (p23), putative [Tribolium castaneum] gi|270001016|gb|EEZ97463.1| hypothetical protein TcasGA2_TC011294 [Tribolium castaneum]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 164/210 (78%), Gaps = 8/210 (3%)

Query: 1   MNLRISMLLKKQWIGFFFLLILHQIVQ-AVELTFELADNARECFFEDIKRNTSVILEFQV 59
           MN +IS         + F+L+L      A ELTFEL D+A+ECF ++I +NTSV LEFQV
Sbjct: 1   MNTQISY-------NYLFILVLSLYTSYATELTFELPDSAKECFHQEIHKNTSVTLEFQV 53

Query: 60  VTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMD 119
           VTGG+YDVDVS++ P  ++IY+Q+K QFD+H F     G YVVCFSNEFST+SHK+VYMD
Sbjct: 54  VTGGQYDVDVSLQDPRGQVIYKQIKMQFDSHTFTAEHTGVYVVCFSNEFSTFSHKLVYMD 113

Query: 120 FQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNER 179
           FQVGDE  LPG+GEHVTVMTQMESS Q+IHK+L TI+DYQTHHRLREAQGRKRAEDLNER
Sbjct: 114 FQVGDEQPLPGLGEHVTVMTQMESSAQDIHKALTTILDYQTHHRLREAQGRKRAEDLNER 173

Query: 180 VMWWSSIEFVVVLLASTLQVYIVKNFFASR 209
           V+WWS +E V V+  +  QV+++KNFF  R
Sbjct: 174 VLWWSIMETVAVITIAVGQVFVLKNFFTER 203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016979|ref|XP_002428972.1| transmembrane emp24 domain-containing protein 7 precursor, putative [Pediculus humanus corporis] gi|212513801|gb|EEB16234.1| transmembrane emp24 domain-containing protein 7 precursor, putative [Pediculus humanus corporis]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/213 (61%), Positives = 164/213 (76%), Gaps = 6/213 (2%)

Query: 1   MNLRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVV 60
           M+LRI +L     I  F        V  VELTFEL DN ++CF+E+I  N SV LEFQVV
Sbjct: 1   MHLRIVLLTITAIIACFVS------VAGVELTFELGDNDKQCFYENIPMNISVTLEFQVV 54

Query: 61  TGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDF 120
           TGG+YDVDV +EAP KEIIY+Q+K+QFD+H F   + G Y  CFSNEFST+SHK+VYM+F
Sbjct: 55  TGGQYDVDVILEAPNKEIIYKQIKTQFDSHVFTPKIPGIYAACFSNEFSTFSHKIVYMNF 114

Query: 121 QVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERV 180
           QVG+E  LPG+GEH+TVMTQMESS QEIHK L  I D+QTHHRL+EA+GRKRAEDLNERV
Sbjct: 115 QVGEEQPLPGLGEHITVMTQMESSAQEIHKLLAKIDDFQTHHRLKEAKGRKRAEDLNERV 174

Query: 181 MWWSSIEFVVVLLASTLQVYIVKNFFASRNERQ 213
           MWWS +E +++L+++  QV+IVKNFF+ +   Q
Sbjct: 175 MWWSILETILILVSAIGQVFIVKNFFSEKKTIQ 207

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193683384|ref|XP_001943186.1| PREDICTED: transmembrane emp24 domain-containing protein 3-like [Acyrthosiphon pisum]

 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 160/200 (80%)

Query: 14  IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 73
           IG  FL     +V+++ELTFEL D A++C++E+I++NTS  LE+QVVTGG+YDVDV IE+
Sbjct: 10  IGLLFLSYCICLVKSIELTFELQDKAKDCYYENIQKNTSTTLEYQVVTGGQYDVDVIIES 69

Query: 74  PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGE 133
           PTKEI+YRQVKSQFD+H FV  V G Y +CFSNEFST+SHK+VYMD QVG+E  LPG+GE
Sbjct: 70  PTKEILYRQVKSQFDSHTFVAAVSGPYAICFSNEFSTFSHKLVYMDLQVGEEDPLPGIGE 129

Query: 134 HVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLL 193
            VTVMTQME+++Q+IH+ LN IIDYQTHHRL+EAQ RKRAEDLN  V  WS+ E + +LL
Sbjct: 130 QVTVMTQMETTSQDIHEYLNKIIDYQTHHRLKEAQSRKRAEDLNHHVALWSATETIAILL 189

Query: 194 ASTLQVYIVKNFFASRNERQ 213
            + +QVY +K FF  ++  Q
Sbjct: 190 VAIVQVYTLKRFFTEKSPTQ 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180200|gb|EFN68233.1| Transmembrane emp24 domain-containing protein 7 [Camponotus floridanus]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/184 (68%), Positives = 152/184 (82%), Gaps = 4/184 (2%)

Query: 30  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDT 89
           ELTFELADNA+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIY QVK+QFD+
Sbjct: 24  ELTFELADNAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYSQVKTQFDS 83

Query: 90  HQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIH 149
           H F+  + G Y  CFSNEFSTYSHK+VYMDFQVGDE  LPG+GEHVT    MESS QE+H
Sbjct: 84  HNFIPTISGVYKACFSNEFSTYSHKLVYMDFQVGDEMPLPGLGEHVT----MESSAQEVH 139

Query: 150 KSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 209
           K+L +I+DYQTHHRLREAQGRKRAE+LNERV+WWS +E   +L  S  QV+I+KNFF  R
Sbjct: 140 KNLISILDYQTHHRLREAQGRKRAEELNERVLWWSVMETACILFISVGQVFILKNFFTDR 199

Query: 210 NERQ 213
           +  Q
Sbjct: 200 SPSQ 203

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
FB|FBgn0030341	210	p24-1 "p24-related-1" [Drosoph	0.935	0.971	0.556	5.5e-61
UNIPROTKB|A4IFT6	225	TMED7 "TMED7 protein" [Bos tau	0.834	0.808	0.532	1.2e-51
RGD|1303327	221	Tmed3 "transmembrane emp24 pro	0.876	0.864	0.526	1.5e-51
RGD|727954	226	Tmed7 "transmembrane emp24 pro	0.899	0.867	0.505	1.5e-51
UNIPROTKB|Q9Y3B3	224	TMED7 "Transmembrane emp24 dom	0.834	0.812	0.532	1.9e-51
UNIPROTKB|F1RLE5	225	TMED7 "Uncharacterized protein	0.903	0.875	0.504	1.9e-51
ZFIN|ZDB-GENE-040426-2570	217	tmed7 "transmembrane emp24 pro	0.834	0.838	0.549	3.1e-51
MGI|MGI:1913361	221	Tmed3 "transmembrane emp24 dom	0.876	0.864	0.515	4e-51
UNIPROTKB|Q9Y3Q3	217	TMED3 "Transmembrane emp24 dom	0.876	0.880	0.520	2.2e-50
WB|WBGene00019003	203	F57B10.5 [Caenorhabditis elega	0.880	0.945	0.528	3.6e-50

FB|FBgn0030341 p24-1 "p24-related-1" [Drosophila melanogaster (taxid:7227)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 114/205 (55%), Positives = 151/205 (73%)

Query:     9 LKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVD 68
             +  Q + F   L++H  + AVE TF+LADNA +CF+E+IK+N+S   EFQV  GG+ DVD
Sbjct:     1 MNTQIVVFAVALMMH-CISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVD 59

Query:    69 VSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQL 128
             V+++ P  ++IY   K+ FD+HQFV    G Y  CF N+FS +SHK+VY+DFQVG+EP L
Sbjct:    60 VTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFSAFSHKIVYVDFQVGEEPAL 119

Query:   129 PGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEF 188
             PGV EH TV+TQME+S+Q IHK LN I+D QTHHRLREAQGRKRAEDLN+RVM WSS+E 
Sbjct:   120 PGVDEHATVLTQMETSSQAIHKGLNDILDAQTHHRLREAQGRKRAEDLNQRVMVWSSLET 179

Query:   189 VVVLLASTLQVYIVKNFFASRNERQ 213
               V++   +Q+ +++NFF  R   Q
Sbjct:   180 AAVIVIGLVQIMVLRNFFTDRKPSQ 204

GO:0030135 "coated vesicle" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0030133 "transport vesicle" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

GO:0061357 "positive regulation of Wnt protein secretion" evidence=IMP

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|A4IFT6 TMED7 "TMED7 protein" [Bos taurus (taxid:9913)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 97/182 (53%), Positives = 134/182 (73%)

Query:    28 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
             A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P   ++Y+++K Q+
Sbjct:    35 ASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGNVLYKEMKKQY 94

Query:    88 DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQE 147
             D++ F     GTY  CFSNEFST++HK VY DFQVG++P L      V+ +TQMES+   
Sbjct:    95 DSYTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVS 154

Query:   148 IHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 207
             IH++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E +++L+ S  QV+++K+FF+
Sbjct:   155 IHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 214

Query:   208 SR 209
              +
Sbjct:   215 DK 216

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

RGD|1303327 Tmed3 "transmembrane emp24 protein transport domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 101/192 (52%), Positives = 136/192 (70%)

Query:    19 LLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI 78
             LL+  + ++  ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   I
Sbjct:    21 LLLRAERLRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPMGNI 80

Query:    79 IYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHVTV 137
             IYR+ K Q+D+  + T V+G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  VT 
Sbjct:    81 IYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTA 140

Query:   138 MTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTL 197
             +TQMES+   IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S  
Sbjct:   141 LTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFS 200

Query:   198 QVYIVKNFFASR 209
             QV ++K+FF  +
Sbjct:   201 QVLLLKSFFTEK 212

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

RGD|727954 Tmed7 "transmembrane emp24 protein transport domain containing 7" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 99/196 (50%), Positives = 138/196 (70%)

Query:    14 IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 73
             +    LL+L       E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E 
Sbjct:    22 LALLLLLLLPGPSGGSEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLED 81

Query:    74 PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGE 133
             P  +++Y+++K Q+D+  F     GTY  CFSNEFST++HK VY DFQVG++P L     
Sbjct:    82 PDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSEN 141

Query:   134 HVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLL 193
              V+ +TQMES+   IH++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E +++L+
Sbjct:   142 RVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLV 201

Query:   194 ASTLQVYIVKNFFASR 209
              S  QV+++K+FF+ +
Sbjct:   202 VSIGQVFLLKSFFSDK 217

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|Q9Y3B3 TMED7 "Transmembrane emp24 domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 97/182 (53%), Positives = 134/182 (73%)

Query:    28 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
             A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+
Sbjct:    34 ASEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93

Query:    88 DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQE 147
             D+  F     GTY  CFSNEFST++HK VY DFQVG++P L      V+ +TQMES+   
Sbjct:    94 DSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVS 153

Query:   148 IHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 207
             IH++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E +++L+ S  QV+++K+FF+
Sbjct:   154 IHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 213

Query:   208 SR 209
              +
Sbjct:   214 DK 215

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030127 "COPII vesicle coat" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=TAS

UNIPROTKB|F1RLE5 TMED7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 102/202 (50%), Positives = 142/202 (70%)

Query:    12 QWIGFFFLLILHQIVQ----AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDV 67
             +W G   L++L  +V     A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDV
Sbjct:    16 RW-GHRLLVLLLLLVPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDV 74

Query:    68 DVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ 127
             D  +E P   ++Y+++K Q+D+  F     GTY  CFSNEFST++HK VY DFQVG++P 
Sbjct:    75 DCRLEDPDGNVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPP 134

Query:   128 LPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIE 187
             L      V+ +TQMES+   IH++L ++IDYQTH RLREAQGR RAEDLN RV +WS  E
Sbjct:   135 LFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGE 194

Query:   188 FVVVLLASTLQVYIVKNFFASR 209
              +++L+ S  QV+++K+FF+ +
Sbjct:   195 ALILLVVSIGQVFLLKSFFSDK 216

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-040426-2570 tmed7 "transmembrane emp24 protein transport domain containing 7" [Danio rerio (taxid:7955)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 100/182 (54%), Positives = 131/182 (71%)

Query:    28 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
             A ELTFEL DNA++CF+EDI   T   LEFQVVTGG YDVD  +E P   ++Y+++K Q+
Sbjct:    27 ASELTFELPDNAKQCFYEDITIGTKCTLEFQVVTGGHYDVDCRLEDPEGTVLYKEMKKQY 86

Query:    88 DTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQE 147
             D+  F     GTY  CFSNEFST++HK VY DFQVGD+P L      VT +TQMES+   
Sbjct:    87 DSFTFSAARNGTYKFCFSNEFSTFTHKTVYFDFQVGDDPPLFPNENRVTALTQMESACVS 146

Query:   148 IHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 207
             IH++L +++DYQTH RLREAQGR RAEDLN RV +WS  E +++L+ S  QV ++++FF+
Sbjct:   147 IHEALKSVMDYQTHFRLREAQGRSRAEDLNSRVAFWSVGEALILLVVSVSQVLLLRSFFS 206

Query:   208 SR 209
              R
Sbjct:   207 DR 208

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1913361 Tmed3 "transmembrane emp24 domain containing 3" [Mus musculus (taxid:10090)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 99/192 (51%), Positives = 136/192 (70%)

Query:    19 LLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI 78
             LL+  + +++ ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   +
Sbjct:    21 LLLRAEPLRSAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPRGNV 80

Query:    79 IYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHVTV 137
             IYR+ K Q+D+  + T  +G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  VT 
Sbjct:    81 IYRETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTA 140

Query:   138 MTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTL 197
             +TQMES+   IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S  
Sbjct:   141 LTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFS 200

Query:   198 QVYIVKNFFASR 209
             QV ++K+FF  +
Sbjct:   201 QVLLLKSFFTEK 212

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|Q9Y3Q3 TMED3 "Transmembrane emp24 domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 101/194 (52%), Positives = 134/194 (69%)

Query:    19 LLILHQIVQ--AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTK 76
             LL+L +  Q    ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P  
Sbjct:    15 LLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPQG 74

Query:    77 EIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQ-LPGVGEHV 135
               IYR+ K Q+D+  +   V+G Y  CFSNEFST+SHK VY DFQVGDEP  LP +G  V
Sbjct:    75 NTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRV 134

Query:   136 TVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLAS 195
             T +TQMES+   IH++L T+ID QTH+RLREAQ R RAEDLN RV +WS  E + + + S
Sbjct:   135 TALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVS 194

Query:   196 TLQVYIVKNFFASR 209
               QV ++K+FF  +
Sbjct:   195 FSQVLLLKSFFTEK 208

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030126 "COPI vesicle coat" evidence=ISS

WB|WBGene00019003 F57B10.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 102/193 (52%), Positives = 133/193 (68%)

Query:    21 ILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIY 80
             IL  +  ++ELTFEL DNA +CF+ED+K++   + EFQVVTGG YDVD+ IE P  +++Y
Sbjct:    10 ILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNGKVLY 69

Query:    81 RQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQL-PGVGEHVTVMT 139
             +  K Q+D+  F   VEGTY  CFSNEFST+SHK+VYMD+Q GD+  L   V +    MT
Sbjct:    70 KDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVTQGAHAMT 129

Query:   140 QMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQV 199
             Q+E+    I   L TI DYQTHHRLREA GRKRAE+LNERVM WS  +  VV+     QV
Sbjct:   130 QLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVVFIGIGQV 189

Query:   200 YIVKNFFASRNER 212
             +++K+FF  +  R
Sbjct:   190 FLLKSFFNDKRTR 202

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D3ZTX0	TMED7_RAT	No assigned EC number	0.5333	0.8256	0.7964	yes	N/A
Q9FVU0	P24D4_ARATH	No assigned EC number	0.2364	0.8073	0.8301	yes	N/A
Q9Y3Q3	TMED3_HUMAN	No assigned EC number	0.5300	0.8348	0.8387	no	N/A
Q9Y3B3	TMED7_HUMAN	No assigned EC number	0.5329	0.8348	0.8125	yes	N/A
Q769F9	TMEDA_DICDI	No assigned EC number	0.3011	0.8027	0.8536	yes	N/A
Q6AY25	TMED3_RAT	No assigned EC number	0.5351	0.8440	0.8325	no	N/A
O13770	YE98_SCHPO	No assigned EC number	0.315	0.8807	0.9142	yes	N/A
Q78IS1	TMED3_MOUSE	No assigned EC number	0.5187	0.8532	0.8416	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	4e-51

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  163 bits (414), Expect = 4e-51
 Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 6/180 (3%)

Query: 30  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPT---KEIIYRQVKSQ 86
            LTFEL    +ECF+E++ + T V   +QV++GG  D+D +I  P      I  ++ +  
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKS 60

Query: 87  FDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQ 146
                F     G Y  CFSN FST+S K V  D +VG+E +     E    +  +E   +
Sbjct: 61  GGKFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVGEEAKDIAKKEK---LDPLEEELK 117

Query: 147 EIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFF 206
           ++   LN I   Q + R REA+ R+  E  N RV+WWS I+ +V++  S LQVY +K FF
Sbjct: 118 KLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFF 177

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG1692|consensus	201		100.0
KOG1693|consensus	209		100.0
KOG1690|consensus	215		100.0
KOG1691|consensus	210		100.0
KOG3287|consensus	236		100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	93.82
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	93.41
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	92.42
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	89.71
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	89.43
PRK02710	119	plastocyanin; Provisional	87.61
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	86.39
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	83.74
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	82.47
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	80.05

>KOG1692|consensus

Probab=100.00  E-value=1.6e-49  Score=302.24  Aligned_cols=184  Identities=31%  Similarity=0.524  Sum_probs=172.9

Q ss_pred             ceEEEEEEeCCCcceEEEEccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeeceecccceEEEEeecceeEEEEEEec
Q psy3528          28 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        28 ~~~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~  107 (218)
                      +.++.+.+++.+++||+|++.+|+.+.++|++.+|+..++++.|++|+|+.++..++...|+|+|+|+.+|.|++||+|.
T Consensus        18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~   97 (201)
T KOG1692|consen   18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNK   97 (201)
T ss_pred             hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCCccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCC
Confidence            66788999999999999999999999999999999888999999999999999998889999999999999999999999


Q ss_pred             CCCcceEEEEEEEEeccCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHhHhHH
Q psy3528         108 FSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIE  187 (218)
Q Consensus       108 ~~~~~~k~V~f~~~~g~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~i~~eq~~~~~re~~~~~~~est~~rv~~~sii~  187 (218)
                      .+...||.|.|++++|..++.++. +++.+.+++++.+++|++.+..++.||+|+..||.+||+++|+|++|++|||++|
T Consensus        98 ~s~mtpk~V~F~ihvg~~~~~~d~-~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife  176 (201)
T KOG1692|consen   98 MSTMTPKTVMFTIHVGHAPQRDDL-AKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFE  176 (201)
T ss_pred             CCCCCceEEEEEEEEeeccccchh-cccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHH
Confidence            998889999999999988776543 4555667899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHhhhcccccc
Q psy3528         188 FVVVLLASTLQVYIVKNFFASRNER  212 (218)
Q Consensus       188 i~vli~~~~~Qv~~lk~fF~~Kk~~  212 (218)
                      .+++|+++++|||||||||+.|+.+
T Consensus       177 ~~vLi~~s~~QVyYLkRfFEvkrvv  201 (201)
T KOG1692|consen  177 ALVLIAMSVLQVYYLKRFFEVKRVV  201 (201)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeecC
Confidence            9999999999999999999999753

>KOG1693|consensus

Probab=100.00  E-value=3.3e-43  Score=269.15  Aligned_cols=186  Identities=52%  Similarity=0.873  Sum_probs=171.8

Q ss_pred             hcceEEEEEEeCCCcceEEEEccCCCE-EEEEEEEEECCeeeEEEEEECCCCcEEeeceecccceEEEEeecceeEEEEE
Q psy3528          26 VQAVELTFELADNARECFFEDIKRNTS-VILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCF  104 (218)
Q Consensus        26 ~~~~~l~~~l~~g~~~Cf~e~v~~~~~-i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf  104 (218)
                      .++..++|+||++..+|||+++++++. +++.|+|..||+++|++.|.+|+|+++++..++..++|.|++.+.|+|++||
T Consensus        19 s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCF   98 (209)
T KOG1693|consen   19 SEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCF   98 (209)
T ss_pred             hhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEe
Confidence            337899999999999999999998655 9999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcceEEEEEEEEeccCCCCC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHh
Q psy3528         105 SNEFSTYSHKVVYMDFQVGDEPQLP-GVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWW  183 (218)
Q Consensus       105 ~n~~~~~~~k~V~f~~~~g~~~~~~-~~~~~~~~l~~l~~~l~~l~~~l~~i~~eq~~~~~re~~~~~~~est~~rv~~~  183 (218)
                      +|.++.+++|.+.+++.+|.+.... +..+.+..+..+++.+..|++.|+.|.+.|.|+|.||.+.+.+++|+++|++||
T Consensus        99 sN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~  178 (209)
T KOG1693|consen   99 SNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWW  178 (209)
T ss_pred             cCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHH
Confidence            9999988899999999999776542 222345567899999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhhhhhHHHHHHhhhccccc
Q psy3528         184 SSIEFVVVLLASTLQVYIVKNFFASRNE  211 (218)
Q Consensus       184 sii~i~vli~~~~~Qv~~lk~fF~~Kk~  211 (218)
                      |+.++++++++++.||..||.||..|+.
T Consensus       179 Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~  206 (209)
T KOG1693|consen  179 SLLEIIAVVVISIAQVFILKFFFTDRRK  206 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            9999999999999999999999998864

>KOG1690|consensus

Probab=100.00  E-value=1.1e-42  Score=265.75  Aligned_cols=194  Identities=25%  Similarity=0.423  Sum_probs=169.8

Q ss_pred             HHHHHHhhhhcceEEEEEEeCCCcceEEEEccCCCEEEEEEEEEE----------CCeeeEEEEEECCCCc--EEeecee
Q psy3528          17 FFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVT----------GGKYDVDVSIEAPTKE--IIYRQVK   84 (218)
Q Consensus        17 ~~~~~l~~~~~~~~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~----------~~~~~i~v~v~~p~g~--~v~~~~~   84 (218)
                      ++++++.++..+.|++|++..++++||++++|+|+.+.|+|.+.=          .++.++.+.|.+|.++  +|.++..
T Consensus         7 ~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~   86 (215)
T KOG1690|consen    7 LLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQY   86 (215)
T ss_pred             HHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecC
Confidence            344555567889999999999999999999999999999998631          1345899999999666  9999889


Q ss_pred             cccceEEEEeecceeEEEEEEecCCCc---ceEEEEEEEEeccCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3528          85 SQFDTHQFVTLVEGTYVVCFSNEFSTY---SHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTH  161 (218)
Q Consensus        85 ~~~g~f~f~~~~~G~y~~Cf~n~~~~~---~~k~V~f~~~~g~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~i~~eq~~  161 (218)
                      .++|+|+|++..+|+|+||+....+.|   +.-.|.+++.+|+++++++.  .+++.+.++.++..|.+++..|..||.+
T Consensus        87 ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~  164 (215)
T KOG1690|consen   87 SSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKEQNL  164 (215)
T ss_pred             CCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997654432   23469999999999888652  4455667888999999999999999999


Q ss_pred             HHHHHHhhHHHHHhhhhhhHHhHhHHHHHHHhhhhhHHHHHHhhhcccccc
Q psy3528         162 HRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNER  212 (218)
Q Consensus       162 ~~~re~~~~~~~est~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~  212 (218)
                      +|.||++.|++.||+|+|++|||++|++++++.|+||+.|||+||.++|++
T Consensus       165 ~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv  215 (215)
T KOG1690|consen  165 QREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV  215 (215)
T ss_pred             HHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999974

>KOG1691|consensus

Probab=100.00  E-value=6.8e-41  Score=259.80  Aligned_cols=192  Identities=20%  Similarity=0.336  Sum_probs=173.2

Q ss_pred             HHhhhhcceEEEEEEeCCCcceEEEEccCCCEEEEEEEEEECCe---eeEEEEEECCCCcEEeeceecccceEEEEeecc
Q psy3528          21 ILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGK---YDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE   97 (218)
Q Consensus        21 ~l~~~~~~~~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~---~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~   97 (218)
                      ++++...+.++.|++|++.++|+.|++.+|..+.|.|.+.++..   ..+++.|+||.|+.+++.++..+|+|+|++.+.
T Consensus        13 ~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~   92 (210)
T KOG1691|consen   13 FLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEES   92 (210)
T ss_pred             HHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccceEEEEeccC
Confidence            33445677889999999999999999999999999999987533   469999999999999999999999999999999


Q ss_pred             eeEEEEEEec--CCCcc-eEEEEEEEEeccCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3528          98 GTYVVCFSNE--FSTYS-HKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAE  174 (218)
Q Consensus        98 G~y~~Cf~n~--~~~~~-~k~V~f~~~~g~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~i~~eq~~~~~re~~~~~~~e  174 (218)
                      |.|.+||.+.  ..... ...|+|++..|.++++.+.-++++.++++|-.+++|.+.+..|.++..|+|.||+++|++++
T Consensus        93 ~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ne  172 (210)
T KOG1691|consen   93 GMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNE  172 (210)
T ss_pred             CcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999993  33222 35799999999998874323888999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHhHhHHHHHHHhhhhhHHHHHHhhhcccccc
Q psy3528         175 DLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNER  212 (218)
Q Consensus       175 st~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~  212 (218)
                      +||+|+.|+|++.++++++++.||++|||+||++||+.
T Consensus       173 sTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  173 STNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999974

>KOG3287|consensus

Probab=100.00  E-value=1.6e-38  Score=246.06  Aligned_cols=189  Identities=26%  Similarity=0.521  Sum_probs=169.8

Q ss_pred             ceEEEEEEeCCCcceEEEEccCCCEEEEEEEEEEC-CeeeEEEEEECCCCcEEeeceecccceEEEEeecceeEEEEEEe
Q psy3528          28 AVELTFELADNARECFFEDIKRNTSVILEFQVVTG-GKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSN  106 (218)
Q Consensus        28 ~~~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~-~~~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n  106 (218)
                      ...++|.||||+++|||..++++..+.++|+|+.| +..+|++++.+|.|+++.+...+..|.+++...+.|.|++||+|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDN  112 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDN  112 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcC
Confidence            46799999999999999999999999999999998 66789999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEEEEeccCCC----CCCC---c----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy3528         107 EFSTYSHKVVYMDFQVGDEPQ----LPGV---G----EHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAED  175 (218)
Q Consensus       107 ~~~~~~~k~V~f~~~~g~~~~----~~~~---~----~~~~~l~~l~~~l~~l~~~l~~i~~eq~~~~~re~~~~~~~es  175 (218)
                      ++|.++.|.|.|++.+...-.    +++.   +    .-..+++++++.+.++..++..+...|.+.|.||.|+|.+.++
T Consensus       113 sFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~es  192 (236)
T KOG3287|consen  113 SFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQES  192 (236)
T ss_pred             ccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc
Confidence            999999999999996532211    1110   1    1134678999999999999999999999999999999999999


Q ss_pred             hhhhhHHhHhHHHHHHHhhhhhHHHHHHhhhccccccccCC
Q psy3528         176 LNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQYKP  216 (218)
Q Consensus       176 t~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~~~~~  216 (218)
                      +..||.|||+++++++|+++++|+|+||++|+.|+.++.|.
T Consensus       193 Nf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~~t~~  233 (236)
T KOG3287|consen  193 NFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKSDTKK  233 (236)
T ss_pred             ccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCccccc
Confidence            99999999999999999999999999999999999886653

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=1.9e-39  Score=254.42  Aligned_cols=178  Identities=36%  Similarity=0.630  Sum_probs=5.6

Q ss_pred             EEEEEEeCCCcceEEEEccCCCEEEEEEEEEECC-eeeEEEEEE--CCCCcEEeeceec-ccceEEEEeecceeEEEEEE
Q psy3528          30 ELTFELADNARECFFEDIKRNTSVILEFQVVTGG-KYDVDVSIE--APTKEIIYRQVKS-QFDTHQFVTLVEGTYVVCFS  105 (218)
Q Consensus        30 ~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~-~~~i~v~v~--~p~g~~v~~~~~~-~~g~f~f~~~~~G~y~~Cf~  105 (218)
                      |++|.|+||+++||++++++|+.+.++|.+.+++ ..++++.|+  +|+|+.+++++.. .+|+|+|+++++|+|++||+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~   80 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFD   80 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEE
Confidence            5899999999999999999999999999999887 789999999  5566898888655 45799999999999999999


Q ss_pred             ecCCCcce-EEEEEEEEeccCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHhH
Q psy3528         106 NEFSTYSH-KVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWS  184 (218)
Q Consensus       106 n~~~~~~~-k~V~f~~~~g~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~i~~eq~~~~~re~~~~~~~est~~rv~~~s  184 (218)
                      |..+.+++ +.|+|++.+|.++.++...++.+++++++..++++...++.|+++|.|++.|+.+|+++++++++|+++|+
T Consensus        81 n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~s  160 (183)
T PF01105_consen   81 NSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWS  160 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHH
Confidence            99887656 89999999987654422235678899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhHHHHHHhhhc
Q psy3528         185 SIEFVVVLLASTLQVYIVKNFFA  207 (218)
Q Consensus       185 ii~i~vli~~~~~Qv~~lk~fF~  207 (218)
                      ++++++++++++||+++||+||+
T Consensus       161 i~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  161 IIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             -----------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=93.82  E-value=0.1  Score=38.59  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=26.9

Q ss_pred             EEEeecceeEEEEEEecCCCcceEEEEEEEE
Q psy3528          91 QFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQ  121 (218)
Q Consensus        91 ~f~~~~~G~y~~Cf~n~~~~~~~k~V~f~~~  121 (218)
                      +++++..|.|-++|+|++|.+.+|++.+.+.
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~  134 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY  134 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence            5778899999999999999888898887764

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=93.41  E-value=1.8  Score=29.94  Aligned_cols=60  Identities=17%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             CCCEEEEEEEEEECC-------eeeEEEEEECCCCcEEeecee-c--ccceEEE--Eeec---ceeEEEEEEecC
Q psy3528          49 RNTSVILEFQVVTGG-------KYDVDVSIEAPTKEIIYRQVK-S--QFDTHQF--VTLV---EGTYVVCFSNEF  108 (218)
Q Consensus        49 ~~~~i~~~y~v~~~~-------~~~i~v~v~~p~g~~v~~~~~-~--~~g~f~f--~~~~---~G~y~~Cf~n~~  108 (218)
                      .|+.|.+.-.+...+       ...+.+.|.||+|+.+..... .  ..|.+++  ..+.   .|.|++=+....
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~   87 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDD   87 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEcc
Confidence            477777666654322       247999999999999987665 2  3455444  3333   699999888753

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.42  E-value=0.59  Score=30.33  Aligned_cols=61  Identities=13%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             ceEEEEccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeeceec-----ccceEEEEeecceeEEEEE
Q psy3528          41 ECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKS-----QFDTHQFVTLVEGTYVVCF  104 (218)
Q Consensus        41 ~Cf~e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~-----~~g~f~f~~~~~G~y~~Cf  104 (218)
                      ..|..++++|..+.+.  +.++. .+.++.+++++|..+......     ......|+++.+|+|.+=+
T Consensus         3 D~y~f~v~ag~~l~i~--l~~~~-~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTID--LSGGS-GDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEE--ECETT-SSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEE--EcCCC-CCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            3566778888876544  44433 267799999998766552211     1234678889999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=89.71  E-value=3.1  Score=27.86  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=24.1

Q ss_pred             CCEEEEEEEEEECCeeeEEEEEECCCCcEEeec
Q psy3528          50 NTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ   82 (218)
Q Consensus        50 ~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~   82 (218)
                      +..+.+.|.+.++. ..+.+.|+|.+|++|++.
T Consensus        11 ~~~~~~~~~l~~~a-~~v~v~I~d~~G~~V~t~   42 (81)
T PF13860_consen   11 GTKGSIEYTLPEDA-DNVTVTIYDSNGQVVRTI   42 (81)
T ss_dssp             TCEEEEEEEECSSC-EEEEEEEEETTS-EEEEE
T ss_pred             CEEEEEEEeCCCcc-cEEEEEEEcCCCCEEEEE
Confidence            34777888787643 468999999999999764

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=89.43  E-value=2.4  Score=29.18  Aligned_cols=45  Identities=16%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccce--EEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+.+.|.+|+|+.+.-+ .+...|.  .+|++...|.|.+.+.-.
T Consensus        30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~   77 (93)
T smart00557       30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFG   77 (93)
T ss_pred             CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            34579999999998655322 2233454  468899999999998644

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PRK02710 plastocyanin; Provisional

Probab=87.61  E-value=8.7  Score=27.75  Aligned_cols=74  Identities=12%  Similarity=0.083  Sum_probs=34.9

Q ss_pred             hcceEEEEEEeCCC-cceEE---EEccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeec-eecccceEEEEeecceeE
Q psy3528          26 VQAVELTFELADNA-RECFF---EDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ-VKSQFDTHQFVTLVEGTY  100 (218)
Q Consensus        26 ~~~~~l~~~l~~g~-~~Cf~---e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~-~~~~~g~f~f~~~~~G~y  100 (218)
                      ..+...++.+.... .-.|.   .+++.|+.|.  +...+...+++.+  .+..+ ....+ ...+...++++....|.|
T Consensus        26 a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~~~~~H~v~~--~~~~~-~~~~~~~~~pg~t~~~tF~~~G~y  100 (119)
T PRK02710         26 ASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNNKLAPHNAVF--DGAKE-LSHKDLAFAPGESWEETFSEAGTY  100 (119)
T ss_pred             cccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEECCCCCceEEe--cCCcc-ccccccccCCCCEEEEEecCCEEE
Confidence            44556666665432 34554   2556788754  4333333334432  22211 11111 112333566666668988


Q ss_pred             EEEE
Q psy3528         101 VVCF  104 (218)
Q Consensus       101 ~~Cf  104 (218)
                      .+=-
T Consensus       101 ~y~C  104 (119)
T PRK02710        101 TYYC  104 (119)
T ss_pred             EEEc
Confidence            7533

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=86.39  E-value=2.3  Score=29.77  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=25.1

Q ss_pred             EccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeeceecccceEEEEeecceeEEEE
Q psy3528          46 DIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVC  103 (218)
Q Consensus        46 ~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~G~y~~C  103 (218)
                      .+++|+.+.+.+.-.+...  -++.+.+-+-+...  .......+.|++.+.|+|.+=
T Consensus        38 ~v~~G~~v~l~~~N~~~~~--h~~~i~~~~~~~~l--~~g~~~~~~f~~~~~G~y~~~   91 (104)
T PF13473_consen   38 TVKAGQPVTLTFTNNDSRP--HEFVIPDLGISKVL--PPGETATVTFTPLKPGEYEFY   91 (104)
T ss_dssp             EEETTCEEEEEEEE-SSS---EEEEEGGGTEEEEE---TT-EEEEEEEE-S-EEEEEB
T ss_pred             EEcCCCeEEEEEEECCCCc--EEEEECCCceEEEE--CCCCEEEEEEcCCCCEEEEEE
Confidence            4566777766665443222  33444331111111  112234677888999999873

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=83.74  E-value=9.8  Score=26.04  Aligned_cols=41  Identities=15%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             eEEEEEECCCCc----EEe-eceecccce--EEEEeecceeEEEEEEe
Q psy3528          66 DVDVSIEAPTKE----IIY-RQVKSQFDT--HQFVTLVEGTYVVCFSN  106 (218)
Q Consensus        66 ~i~v~v~~p~g~----~v~-~~~~~~~g~--f~f~~~~~G~y~~Cf~n  106 (218)
                      .+.+.|.+|++.    .+. .-.....|.  .+|++...|.|++++.-
T Consensus        43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~   90 (101)
T PF00630_consen   43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKI   90 (101)
T ss_dssp             EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEE
T ss_pred             eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEE
Confidence            578899999886    332 222334554  45788899999998864

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=82.47  E-value=11  Score=26.62  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=37.9

Q ss_pred             CCCEEEEEEEEEECCeeeEEEEEECCCCcEEeeceecc--cceEEEE--eecceeEEEEEEecCC
Q psy3528          49 RNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQ--FDTHQFV--TLVEGTYVVCFSNEFS  109 (218)
Q Consensus        49 ~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~~--~g~f~f~--~~~~G~y~~Cf~n~~~  109 (218)
                      .|..+.+.|..   ...++.++|+|.+|+++|+..-..  .....+.  ....|.|.+=+.+...
T Consensus        35 ~~~~l~I~F~~---~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   35 DGNNLSIEFES---PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             ETTEEEEEESS-----SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             eCCEEEEEEcC---CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            35667777742   233689999999999999875433  2235555  4468999999998864

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=80.05  E-value=5.5  Score=25.42  Aligned_cols=43  Identities=12%  Similarity=0.106  Sum_probs=34.0

Q ss_pred             eEEEEEECCCCcEEee--ceecccceEEEEeecceeEEEEEEecC
Q psy3528          66 DVDVSIEAPTKEIIYR--QVKSQFDTHQFVTLVEGTYVVCFSNEF  108 (218)
Q Consensus        66 ~i~v~v~~p~g~~v~~--~~~~~~g~f~f~~~~~G~y~~Cf~n~~  108 (218)
                      ++.|.+++.++.....  ..-...|.+.|.--..|.|.+=....-
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP   47 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAP   47 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECC
Confidence            4678889888887765  444567999999999999999988743

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	97.21
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	92.02
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	88.7
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	87.63
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.99
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	85.27
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	84.83
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.65
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	84.56
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	84.25
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	83.11
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.88
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	81.28
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	80.84

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=97.21  E-value=0.0048  Score=53.04  Aligned_cols=89  Identities=16%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             EEEEeCCCcceEEEEcc-CCCEEEEEEEEEECCeeeEEEEEE-C----CC---C--cEEeeceecc----cceEEEEeec
Q psy3528          32 TFELADNARECFFEDIK-RNTSVILEFQVVTGGKYDVDVSIE-A----PT---K--EIIYRQVKSQ----FDTHQFVTLV   96 (218)
Q Consensus        32 ~~~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~~~~i~v~v~-~----p~---g--~~v~~~~~~~----~g~f~f~~~~   96 (218)
                      ++.|.+|+...+-..+. +|..+...|.+.+   .+|.+.|+ .    ++   |  ..+.......    -..-+|++.+
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~---~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~~~~~  357 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG---ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSD  357 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS---SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCS
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecC---CcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEEEcCC
Confidence            38899999999988887 6999999998843   25666665 1    11   2  1232221111    1133678999


Q ss_pred             ceeEEEEEEecCCCcceEEEEEEEEec
Q psy3528          97 EGTYVVCFSNEFSTYSHKVVYMDFQVG  123 (218)
Q Consensus        97 ~G~y~~Cf~n~~~~~~~k~V~f~~~~g  123 (218)
                      .|.|.++|+|++|.+.+|.|.+.+.+.
T Consensus       358 ~G~y~l~fdNs~S~~~~k~l~y~v~v~  384 (403)
T 1olm_A          358 PGIYVLRFDNTYSFIHAKKVNFTVEVL  384 (403)
T ss_dssp             CEEEEEEEECTTCCCCSEEEEEEEEEE
T ss_pred             CeEEEEEEeccccceeceEEEEEEEEe
Confidence            999999999999877789999999874

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=92.02  E-value=0.12  Score=36.28  Aligned_cols=70  Identities=7%  Similarity=-0.015  Sum_probs=49.3

Q ss_pred             EEeCCCcceEEEEccCCCEEEEEEEEEECCeeeEEEEEECCCCcE---EeeceecccceEEEEeecceeEEEEEEec
Q psy3528          34 ELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI---IYRQVKSQFDTHQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        34 ~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~---v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~  107 (218)
                      .|.+++...+...+.+|+.+.+..  ....  .+.+.|.+|+++.   ++..+....+.++-+.+.+|+|++=+...
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l--s~~~--~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~   95 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI--GGSS--NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQM   95 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C--EEST--TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECC
T ss_pred             EecCCCceEEEEEecCCCEEEEEe--CCCC--cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEec
Confidence            477788888888899999887777  3222  4678899999874   34333333457888999999999999765

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=88.70  E-value=2.1  Score=29.53  Aligned_cols=73  Identities=11%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCCcceEEEEccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeec---eecccceEEEEeecceeEEEEEE
Q psy3528          29 VELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ---VKSQFDTHQFVTLVEGTYVVCFS  105 (218)
Q Consensus        29 ~~l~~~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~---~~~~~g~f~f~~~~~G~y~~Cf~  105 (218)
                      ..+.=.|.+++...+...+.+|+.+.+...  ++   ...+.|..|++......   ......++..+.+.+|+|++=+.
T Consensus        16 a~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l~--s~---~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~I~V~   90 (111)
T 4g9s_B           16 AQYSGEIKGYDYDTYTFYAKKGQKVHVSIS--NE---GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELRVL   90 (111)
T ss_dssp             EEEEEEEETTCCEEEEEEECTTCEEEEEES--CT---TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEEEEEE
T ss_pred             eEEEEEEeCCCceEEEEEecCCCEEEEEEe--cC---CccEEEECCCCccccccccccccCCceEEEEecCCccEEEEEE
Confidence            345556888999999999999998877653  22   24566888876543221   12234568889999999999997


Q ss_pred             e
Q psy3528         106 N  106 (218)
Q Consensus       106 n  106 (218)
                      .
T Consensus        91 ~   91 (111)
T 4g9s_B           91 Q   91 (111)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.63  E-value=1.6  Score=29.24  Aligned_cols=44  Identities=7%  Similarity=0.064  Sum_probs=31.1

Q ss_pred             eeEEEEEECCCCcEEeec-eecccc--eEEEEeecceeEEEEEEecC
Q psy3528          65 YDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSNEF  108 (218)
Q Consensus        65 ~~i~v~v~~p~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~  108 (218)
                      .++.+.|.+|+|..+.-. .+...|  ...|++.+.|.|.+++.-..
T Consensus        22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g   68 (93)
T 2d7n_A           22 GELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDG   68 (93)
T ss_dssp             SCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESS
T ss_pred             CCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECC
Confidence            468999999999765321 122334  45678999999999997543

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.99  E-value=0.82  Score=30.94  Aligned_cols=45  Identities=11%  Similarity=0.104  Sum_probs=31.5

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccc--eEEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~  107 (218)
                      +..++.+.|.+|+|..+.-. .+...|  ...|++.+.|.|.+++.-.
T Consensus        28 g~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~   75 (95)
T 2ee9_A           28 RKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYM   75 (95)
T ss_dssp             CTTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEES
T ss_pred             CCCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEEC
Confidence            34479999999999765322 122334  4567899999999999754

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=85.27  E-value=6.4  Score=26.27  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             CCCEEEEEEEEEECC-----eeeEEEEEECCCCcEEeeceec--ccceE--EEEee---cceeEEEEEEec
Q psy3528          49 RNTSVILEFQVVTGG-----KYDVDVSIEAPTKEIIYRQVKS--QFDTH--QFVTL---VEGTYVVCFSNE  107 (218)
Q Consensus        49 ~~~~i~~~y~v~~~~-----~~~i~v~v~~p~g~~v~~~~~~--~~g~f--~f~~~---~~G~y~~Cf~n~  107 (218)
                      .|+.|.+..-+.+.+     ...+.+.+.||+|+.+.+....  ..|.+  +|..+   ..|.|++.....
T Consensus        15 PGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~   85 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKK   85 (102)
T ss_dssp             TTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECT
T ss_pred             CCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEEC
Confidence            477777766655421     2247899999999998774332  34544  44443   369999999864

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.83  E-value=2  Score=29.75  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccce--EEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+.+.|.+|+|..+.-. .+...|.  .+|++.+.|.|.+.+.-.
T Consensus        42 G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   89 (115)
T 2d7m_A           42 GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYG   89 (115)
T ss_dssp             CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEES
T ss_pred             CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEEC
Confidence            33468999999998644322 1223454  457889999999999754

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.65  E-value=2.8  Score=29.60  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccce--EEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+.+.|.+|+|..+.-. .+...|.  ..|++.+.|.|.+++.-.
T Consensus        41 G~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~   88 (124)
T 2dmb_A           41 GKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFG   88 (124)
T ss_dssp             CSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEES
T ss_pred             CCCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEEC
Confidence            33468899999998654322 1223454  568899999999999744

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=84.56  E-value=7.4  Score=27.84  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             CEEEEEEEEEECCeeeEEEEEECCCCcEEeece--ecccceEEEE--e-------ecceeEEEEEEec
Q psy3528          51 TSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQV--KSQFDTHQFV--T-------LVEGTYVVCFSNE  107 (218)
Q Consensus        51 ~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~--~~~~g~f~f~--~-------~~~G~y~~Cf~n~  107 (218)
                      ..+.+.|.+..+ ...+.+.|+|.+|+.++.-.  ..+.|.+.|+  -       -.+|.|.+-+.-.
T Consensus        24 ~~~~~~~~l~~~-a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~   90 (138)
T 3osv_A           24 DTFKASLNLPVS-SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTS   90 (138)
T ss_dssp             SCEEEEEEESBC-EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             CeEEEEEECCCC-CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEE
Confidence            456778887654 45799999999999998743  2345655554  2       2368899988654

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=84.25  E-value=3  Score=27.28  Aligned_cols=43  Identities=9%  Similarity=0.020  Sum_probs=27.6

Q ss_pred             eeEEEEEECCCCcEEee-ceecccce--EEEEeecceeEEEEEEec
Q psy3528          65 YDVDVSIEAPTKEIIYR-QVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        65 ~~i~v~v~~p~g~~v~~-~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      ..+.+.|.+|+|..+.- -.+...|.  .+|++.+.|.|.+.+.-.
T Consensus        30 ~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   75 (89)
T 3cnk_A           30 NMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWG   75 (89)
T ss_dssp             CCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEET
T ss_pred             CcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEEC
Confidence            45788888998753211 11223344  457888999999988643

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=83.11  E-value=9.8  Score=27.13  Aligned_cols=54  Identities=15%  Similarity=0.087  Sum_probs=37.3

Q ss_pred             EEEEEEEEEECCeeeEEEEEECCCCcEEeece--ecccceEEEE--ee-------cceeEEEEEEec
Q psy3528          52 SVILEFQVVTGGKYDVDVSIEAPTKEIIYRQV--KSQFDTHQFV--TL-------VEGTYVVCFSNE  107 (218)
Q Consensus        52 ~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~--~~~~g~f~f~--~~-------~~G~y~~Cf~n~  107 (218)
                      ...+.|. .. ....+.+.|+|.+|++++.-.  ..+.|.+.|.  -.       .+|.|.+.+.-.
T Consensus        28 ~~~~~~~-~~-~a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           28 SAKGVVA-AT-SAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             CEEEEEE-ES-SSEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             eEEEEEe-cC-CCCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            3566777 44 445799999999999997744  2445666665  22       368999999744

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=81.88  E-value=2.8  Score=28.61  Aligned_cols=45  Identities=22%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccceE--EEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~f--~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+.+.|.+|+|..+.-. .+...|.|  +|++.+.|.|.+.+.-.
T Consensus        41 G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   88 (108)
T 2dj4_A           41 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYA   88 (108)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEES
T ss_pred             CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            34468999999999655322 22334544  57788899999998744

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.28  E-value=4.3  Score=27.52  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             eeeEEEEEECCCCcEEeeceecccc--eEEEEeecceeEEEEEEec
Q psy3528          64 KYDVDVSIEAPTKEIIYRQVKSQFD--THQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        64 ~~~i~v~v~~p~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~  107 (218)
                      ...+.+.|.+|++..+.- .+...|  ..+|++.+.|.|.+.+.-.
T Consensus        41 ~~~l~v~v~~p~~~~v~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~   85 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEITF-DDHKNGSCGVSYIAQEPGNYEVSIKFN   85 (105)
T ss_dssp             CCCEEEEEESSSCEEEEE-CCCCSSCCCEEEEESSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCEEEE-EECCCCEEEEEEEECCCceEEEEEEEC
Confidence            346888899998865522 223334  5678899999999999743

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=80.84  E-value=3.8  Score=27.21  Aligned_cols=44  Identities=9%  Similarity=0.055  Sum_probs=28.0

Q ss_pred             eeeEEEEEECCCCcEEe-eceecccce--EEEEeecceeEEEEEEec
Q psy3528          64 KYDVDVSIEAPTKEIIY-RQVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        64 ~~~i~v~v~~p~g~~v~-~~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      ...+.+.|.+|+|..+. +-.+...|.  .+|++.+.|.|.+.+.-.
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   82 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWG   82 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEEC
Confidence            34688888999875321 111223444  457888899999888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1olma2	119	b.132.1.1 (A:275-393) Supernatant protein factor (	1e-04

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 6/96 (6%)

Query: 29  VELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFD 88
           VE             F     +    +  +   G +       E        ++  S   
Sbjct: 18  VEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLP----NQRYNSHLV 73

Query: 89  --THQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQV 122
                      G YV+ F N +S    K V    +V
Sbjct: 74  PEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	98.23
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	93.37
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.57
d1wmda1	116	Alkaline serine protease kp-43, C-terminal domain	90.55
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.08
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	88.39
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	87.41
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.25
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	87.21
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.71
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.92
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.65
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	84.39
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	84.21
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.04
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	81.24
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	80.15
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	80.01

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.6e-05  Score=55.41  Aligned_cols=89  Identities=16%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             EEEEeCCCcceEEEEcc-CCCEEEEEEEEEECCeeeEEEEEEC--CCC--------cEEeeceeccc----ceEEEEeec
Q psy3528          32 TFELADNARECFFEDIK-RNTSVILEFQVVTGGKYDVDVSIEA--PTK--------EIIYRQVKSQF----DTHQFVTLV   96 (218)
Q Consensus        32 ~~~l~~g~~~Cf~e~v~-~~~~i~~~y~v~~~~~~~i~v~v~~--p~g--------~~v~~~~~~~~----g~f~f~~~~   96 (218)
                      ++.|.+|+....-..+. +|..+...|++.+   .+|.|.|.-  ..|        ..+....+...    -.=+|.+++
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~---~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~~~~~   83 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG---ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSD   83 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS---SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCS
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCC---ccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEEEcCC
Confidence            47899998888888886 5899999998753   356666652  111        12332221111    123688899


Q ss_pred             ceeEEEEEEecCCCcceEEEEEEEEec
Q psy3528          97 EGTYVVCFSNEFSTYSHKVVYMDFQVG  123 (218)
Q Consensus        97 ~G~y~~Cf~n~~~~~~~k~V~f~~~~g  123 (218)
                      .|.|.+||+|++|.+..|.|.+.+.+-
T Consensus        84 ~G~Y~l~FDNs~S~~~sK~l~Y~i~v~  110 (119)
T d1olma2          84 PGIYVLRFDNTYSFIHAKKVNFTVEVL  110 (119)
T ss_dssp             CEEEEEEEECTTCCCCSEEEEEEEEEE
T ss_pred             CEEEEEEEeCCcceEEeeEEEEEEEEE
Confidence            999999999999988899999999984

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.094  Score=34.30  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccce--EEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+.+.|.+|+|+.+.-. .....|.  .+|++.+.|.|.+.+.-.
T Consensus        35 G~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~   82 (102)
T d2d7ma1          35 GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYG   82 (102)
T ss_dssp             CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEES
T ss_pred             CCCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEEC
Confidence            34468999999998755322 1223354  578999999999999654

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.39  Score=30.74  Aligned_cols=42  Identities=14%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             eeeEEEEEECCCCcEEeeceecccceEEEEeecceeEEEEEE
Q psy3528          64 KYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFS  105 (218)
Q Consensus        64 ~~~i~v~v~~p~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~  105 (218)
                      ...+.+.|.+|++..+.-......-..+|++.+.|.|.+.+.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            346888999999876644433333456899999999999995

>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43, C-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Proprotein convertase P-domain
domain: Alkaline serine protease kp-43, C-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=90.55  E-value=1.5  Score=29.12  Aligned_cols=74  Identities=12%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             EEeCCCcceEEEEccCCCEEEEEEEEEECC---------eeeEEEEEECCCCcEEeecee-----------cccceEEEE
Q psy3528          34 ELADNARECFFEDIKRNTSVILEFQVVTGG---------KYDVDVSIEAPTKEIIYRQVK-----------SQFDTHQFV   93 (218)
Q Consensus        34 ~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~---------~~~i~v~v~~p~g~~v~~~~~-----------~~~g~f~f~   93 (218)
                      .|.+|+..=|...++++..+.+.-.-.+..         -.++++.|.+|+|...+-...           ..-.+..+.
T Consensus         8 ~l~~g~~~ty~~~v~~~~~l~vtL~W~D~p~s~~a~~~LvnDLDL~V~~p~G~~~~~n~~~~~~~~~~D~~nnvE~V~i~   87 (116)
T d1wmda1           8 SLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFIN   87 (116)
T ss_dssp             EECTTCEEEEEEEECTTSCEEEEEECCCCCCCTTCSCCCCSEEEEEEECTTSCEEETTCCSSSTTSCCCSSCSEEEEEES
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEEeeCCCCCCCcchheeeeeeEEEEcCCCCEEeCCccccCccCccccCCcEeEEEEC
Confidence            355666665666666655555554444322         128999999999987642210           011356677


Q ss_pred             eecceeEEEEEEec
Q psy3528          94 TLVEGTYVVCFSNE  107 (218)
Q Consensus        94 ~~~~G~y~~Cf~n~  107 (218)
                      .+..|+|++-+.-.
T Consensus        88 ~p~~G~y~i~V~~~  101 (116)
T d1wmda1          88 APQSGTYTIEVQAY  101 (116)
T ss_dssp             SCCSEEEEEEEEEE
T ss_pred             CCCCeEEEEEEEEE
Confidence            78899999988654

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.38  Score=31.65  Aligned_cols=59  Identities=17%  Similarity=0.161  Sum_probs=37.5

Q ss_pred             CCEEEEEEEEEECCeeeEEEEEECCCCcEEeec-eecccc--eEEEEeecceeEEEEEEecC
Q psy3528          50 NTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSNEF  108 (218)
Q Consensus        50 ~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~  108 (218)
                      |....+..+..+.+...+.+.|.+|+|+.+.-. .+...|  ..+|++.+.|.|++.+.-..
T Consensus        21 g~~~~F~V~~~~ag~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g   82 (111)
T d2dmba1          21 GEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGG   82 (111)
T ss_dssp             SSEEEEEEECSSSCSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESS
T ss_pred             CCEEEEEEEeCCCCCCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECC
Confidence            343433333333344468999999988765322 223345  45789999999999997543

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.48  Score=30.09  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             eeeEEEEEECCCCcEEeeceecccce--EEEEeecceeEEEEEEec
Q psy3528          64 KYDVDVSIEAPTKEIIYRQVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        64 ~~~i~v~v~~p~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      ...+.+.|.+|++..+.-. +...|.  .+|++.+.|.|.+.+.-.
T Consensus        32 ~g~l~v~v~gp~~~~v~v~-d~~dg~y~v~ytP~~~G~y~i~V~~~   76 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFN   76 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCceEEEEE-ECCCCEEEEEEEECCCceEEEEEEEC
Confidence            3468888899988765332 233454  579999999999998643

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.41  E-value=0.45  Score=30.32  Aligned_cols=43  Identities=9%  Similarity=0.056  Sum_probs=30.2

Q ss_pred             eeEEEEEECCCCcEEe-eceecccce--EEEEeecceeEEEEEEec
Q psy3528          65 YDVDVSIEAPTKEIIY-RQVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        65 ~~i~v~v~~p~g~~v~-~~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      ..+++.|.+|+|..+- .-.....|.  .+|++.+.|.|++.+.-.
T Consensus        37 g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~   82 (96)
T d1v05a_          37 NMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWG   82 (96)
T ss_dssp             CCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEET
T ss_pred             CceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEEC
Confidence            3688999999986542 212333444  578999999999999644

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.42  Score=30.69  Aligned_cols=50  Identities=10%  Similarity=0.133  Sum_probs=32.9

Q ss_pred             EEEECCeeeEEEEEECCCCcEEeec-eecccc--eEEEEeecceeEEEEEEec
Q psy3528          58 QVVTGGKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        58 ~v~~~~~~~i~v~v~~p~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~  107 (218)
                      ...+.+...+.+.|.+|+|..+.-. .....|  ..+|++.+.|.|.+.+.-.
T Consensus        28 ~~~~ag~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~   80 (100)
T d2diaa1          28 DCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYG   80 (100)
T ss_dssp             EESSCCSCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEET
T ss_pred             EeCCCCCCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEEC
Confidence            3333334468889999988754322 122334  4678999999999999743

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=1  Score=28.34  Aligned_cols=42  Identities=24%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             CeeeEEEEEECCCCcEEeeceecccceE--EEEeecceeEEEEEE
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCFS  105 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~~~~~~g~f--~f~~~~~G~y~~Cf~  105 (218)
                      +...+.+.|.+|++..+.-.+ ...|.|  +|++.+.|.|.+-+.
T Consensus        32 G~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~   75 (92)
T d2bp3a1          32 GEGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVK   75 (92)
T ss_dssp             CSEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEE
T ss_pred             CCCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEE
Confidence            344688999999887664332 234555  589999999999775

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.4  Score=30.80  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             CeeeEEEEEECCCCcEEeeceecccce--EEEEeecceeEEEEEEe
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQVKSQFDT--HQFVTLVEGTYVVCFSN  106 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n  106 (218)
                      +..++.+.|.+|++..+.-.+ ...|.  .+|++.+.|.|.+.+.-
T Consensus        33 G~g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~   77 (98)
T d2di8a1          33 GYGGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKF   77 (98)
T ss_dssp             CBCCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEE
T ss_pred             CCCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEE
Confidence            344688999999887653322 23344  56889999999999863

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.92  E-value=0.87  Score=29.19  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CeeeEEEEEECCCCcEEeec-eecccce--EEEEeecceeEEEEEEec
Q psy3528          63 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        63 ~~~~i~v~v~~p~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...+++.|.+|+|..+.-. .....|.  .+|++.+.|.|++-+.-.
T Consensus        34 G~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~   81 (101)
T d2dj4a1          34 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYA   81 (101)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEES
T ss_pred             CCCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            34468999999999865432 2233454  567899999999988543

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=0.21  Score=31.61  Aligned_cols=52  Identities=15%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             EEEEEECCeeeEEEEEECCCCcEEeece-ecccce--EEEEeecceeEEEEEEec
Q psy3528          56 EFQVVTGGKYDVDVSIEAPTKEIIYRQV-KSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        56 ~y~v~~~~~~~i~v~v~~p~g~~v~~~~-~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      ...+.+.+..++.+.|.+|+|..+-..- ....|.  .+|++.+.|.|.+-+.-.
T Consensus        15 ~v~~~~a~~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~   69 (88)
T d2j3sa2          15 SLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYK   69 (88)
T ss_dssp             --------CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEET
T ss_pred             EEECCCCCCCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEEC
Confidence            3333333444799999999998764321 223354  458999999999988644

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=0.99  Score=28.85  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=31.1

Q ss_pred             eeEEEEEECCCCcEEeece-ecccce--EEEEeecceeEEEEEEecC
Q psy3528          65 YDVDVSIEAPTKEIIYRQV-KSQFDT--HQFVTLVEGTYVVCFSNEF  108 (218)
Q Consensus        65 ~~i~v~v~~p~g~~v~~~~-~~~~g~--f~f~~~~~G~y~~Cf~n~~  108 (218)
                      ..+++.|.+|+|..+--.- ....|.  .+|++.+.|.|.+.+.-..
T Consensus        34 g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g   80 (99)
T d2d7pa1          34 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG   80 (99)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred             CeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECC
Confidence            3689999999987653321 223454  4688999999999997543

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=1.1  Score=27.51  Aligned_cols=45  Identities=9%  Similarity=0.110  Sum_probs=31.4

Q ss_pred             eeeEEEEEECCCCcEEeece-ecccc--eEEEEeecceeEEEEEEecC
Q psy3528          64 KYDVDVSIEAPTKEIIYRQV-KSQFD--THQFVTLVEGTYVVCFSNEF  108 (218)
Q Consensus        64 ~~~i~v~v~~p~g~~v~~~~-~~~~g--~f~f~~~~~G~y~~Cf~n~~  108 (218)
                      ..++.+.|++|+|..+-..- ....|  ..+|+..+.|.|.+=+....
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g   61 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDG   61 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECC
Confidence            34689999999998653321 22344  45688999999998886543

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.69  Score=29.52  Aligned_cols=42  Identities=14%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             eeEEEEEECCCCcEEeeceecccce--EEEEeecceeEEEEEEec
Q psy3528          65 YDVDVSIEAPTKEIIYRQVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        65 ~~i~v~v~~p~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      .++.+.|.+|++..+--. ....|.  .+|++.+.|.|.+.+.-.
T Consensus        35 g~l~v~v~~p~~~~~~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~   78 (98)
T d2dica1          35 GGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYG   78 (98)
T ss_dssp             SCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEET
T ss_pred             CCcEEEEEeCCCcEEEEE-ECCCCEEEEEEEECCCceEEEEEEEC
Confidence            368888999988654222 223444  468899999999999643

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=81.24  E-value=4  Score=25.59  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             CCcceEEEEccCCCEEEEEEEEEECCeeeEEEEEECCCCcEEeeceeccc--ceEEEEeecceeEEEEEEec
Q psy3528          38 NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF--DTHQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        38 g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~~~~~~--g~f~f~~~~~G~y~~Cf~n~  107 (218)
                      +...-|...++++..+.++..-.  ...++++.+++++|..+........  .........+|.|.+=+...
T Consensus        20 dd~D~y~f~l~~~~~v~i~l~~~--~~~d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~~   89 (101)
T d1nqja_          20 DSRDYYSFEVKEEGEVNIELDKK--DEFGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYKY   89 (101)
T ss_dssp             CCEEEEEEEESSCEEEEEEEEES--SSSEEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEEEeCC--ccCCeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEec
Confidence            44666777888888877766543  3346899999999987755433222  23334455689998888653

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.34  Score=31.36  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             CCEEEEEEEEEECCeeeEEEEEECCCCcEEeec-eecccceE--EEEeecceeEEEEEE
Q psy3528          50 NTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFS  105 (218)
Q Consensus        50 ~~~i~~~y~v~~~~~~~i~v~v~~p~g~~v~~~-~~~~~g~f--~f~~~~~G~y~~Cf~  105 (218)
                      |....+.....+.+..++.+.|.+|+|..+--. .....|.|  +|++.+.|.|.+=+.
T Consensus        23 g~~~~f~Vd~~~ag~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          23 GSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             TSCEEEECCCSCCCSTTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCCCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            444433333333334478999999999755321 22334544  588999999987664

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.01  E-value=2.4  Score=27.39  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             eEEEEEECCCCcEEeeceecccce--EEEEeecceeEEEEEEec
Q psy3528          66 DVDVSIEAPTKEIIYRQVKSQFDT--HQFVTLVEGTYVVCFSNE  107 (218)
Q Consensus        66 ~i~v~v~~p~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n~  107 (218)
                      .+.+.|.+|.+.+-..-.+...|.  .+|++...|.|.+.+.-.
T Consensus        32 ~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~   75 (108)
T d1qfha2          32 KFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLN   75 (108)
T ss_dssp             CEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEET
T ss_pred             eEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEEC
Confidence            577888888775332222233444  468899999999988643