Psyllid ID: psy353

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360---

MPIFGTKTIDKMDDSIGSDMDVEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNALDFGSGSSGSSPSQVIKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccEEEEccccccccEEEccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccEEEEEEccccccHHHcccccccccccccccccccHHHHHcccccccccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHcccccHHEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHccccccHHHHHHHHccccccccccccccccEEEEEcccEEcccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHccccEEEEHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccEEEcccccEEEEEcccccccccc

ccccccccHHHccccHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHccccccccccHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHccccccccccEEccccEEEEEccccccccEEEEHHHcccccccccEEEEEEcccccccccccHHHHccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEcccHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHccccHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHccccccccccccEEEEcHHHHHHcccEEEEccHcHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHccccHHcccccccccccccccHccccHcHHHHHHHHHHccccccccccccccEEEEEEcHEEEcccHHcccccccccccccHHHHHHHccccEEEEEEEEccEEEEEEccccccccccccHHccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHccEEHHEEEHccccccccccccccccEHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEcccccEEEcccccEEEEEcccccccccc

mpifgtktidkmddsigsdmdveqqLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKvwvphllspepksscldwsfdenKVQNILFDSLEeficdgspeeIFQKVsqmdnppsvcgrvfkmgeptyncrecgmdatcvlcvdcfkksthrnhkykmgtsnaggccdcgdveawkkepycdvhiigtqkrhesgsilppdlAQRARLTFSSVLRYAYQLLttdygpsipldlkvppedvlqityshnsdnfctvlyndefhtfeqllttdygpsipldlkvppedvlqityshnsdnfctvlyndefhTFEQVINTLVRSLKCSQKDAIEFVTNIDRegraavkcsnfshcedLKSEIERFTsrhgnrpikVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVcleekapdlsiVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDfikddhdhsfsigsmSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKlefernipnasfkRAQYILYDLRYllgvppdtwtpelRKGFAHGLQFLLDLLSYMQGMDEVTRQVGqhmeyepewESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCAdegidlgqlgevrevgdHSVACLHydvstqpvsihlPLSRFLAGLYIHldkfnlsfysrellsdncffsrltpeqliepvlRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNfesnslknpeeeSIRQTISLVEEFLHLLILItgerympgigrvasddcIKKEIIQQLcikplphselnkalpddsnhetgLERVINEIAdfkkptqssgkgvyelkpefydgynvFFYHysreevsrSEEEQRKRRKAAkelecvpppklppllppfsmvtnLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYalheeesgnyqfftftDRAEKWNIEQHIEELcssprveahkvpqdrkpleinrlinlpddyseLINTvslftcpnsdredsrnpalclicgdmlcsqsyccqtELFFKMSVgactyhshfcgagVGMFLRVRECEVLFlaspnrgcfmsppylddygetdqglrrgnplRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITThcaglldkpGVIKLMKKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNAldfgsgssgsspsqvikfddygetdqglrrgnplRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRawvcscgcgnarscf

mpifgtktidkmddsigSDMDVEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHkykmgtsnaggccDCGDVEAWKKEPYCDVHIIgtqkrhesgsilpPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDregraavkcsnfshcEDLKSEIErftsrhgnrpiKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLnkkkklefernipnasfkRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINeiadfkkptqssgkgvyelKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKaakelecvpppklppllPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEElcssprveahkvpqdrkpleiNRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKwksneklkvkterdKSIAKSVLAAFVQQSTVIGAVVNALDFGsgssgsspsqvIKFDdygetdqglrrgnplrlCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

MPIFGTKTIDKMDDSIGSDMDVEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYsreevsrseeeqrkrrkaakeleCVpppklppllppFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNALDFgsgssgsspsQVIKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

***********************QQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKV******PSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHE*GSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFES**********IRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPL*********************VINEI************GVYELKPEFYDGYNVFFYHYS*******************************LLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCS***************LEINRLINLPDDYSELINTVSLFTCPN*******NPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKV*****KSIAKSVLAAFVQQSTVIGAVVNALDF**************F**Y******LRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGN*****

*******************MDVEQQLPVFI*CSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCL*WSFDENKVQNILFDSLEEFICDGSPEEIF***********VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVH*************LPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKV*******ITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRS***********KELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKL***********KSVLAAFVQQSTVIGAVVNALDFGSGSSGSSPSQVIKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

MPIFGTKTIDKMDDSIGSDMDVEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSL********RQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSRE****************KELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNALDFG********SQVIKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

*********************VEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGT******GSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNALDFGSGSSGSSPSQVIKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAHAPITLTSAGRAWVCSCGCGNARSCF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1363	2.2.26 [Sep-21-2011]
Q9VX91		1824	E3 ubiquitin-protein liga	yes	N/A	0.700	0.523	0.454	0.0
Q6WKZ8		1755	E3 ubiquitin-protein liga	yes	N/A	0.702	0.545	0.400	0.0
Q8IWV8		1755	E3 ubiquitin-protein liga	yes	N/A	0.689	0.535	0.397	0.0
Q8IWV7		1749	E3 ubiquitin-protein liga	no	N/A	0.674	0.526	0.366	0.0
O70481		1757	E3 ubiquitin-protein liga	no	N/A	0.675	0.524	0.358	1e-180
P91133		2058	E3 ubiquitin-protein liga	yes	N/A	0.432	0.286	0.345	5e-96
O60152		1958	E3 ubiquitin-protein liga	yes	N/A	0.426	0.297	0.242	2e-30
O13731		2052	E3 ubiquitin-protein liga	no	N/A	0.398	0.264	0.232	3e-29
O60014		1945	E3 ubiquitin-protein liga	yes	N/A	0.617	0.432	0.233	1e-28
Q6ZT12		1888	E3 ubiquitin-protein liga	no	N/A	0.370	0.267	0.237	8e-27

>sp\|Q9VX91\|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1 PE=2 SV=2	Back alignment and function desciption

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1033 (45%), Positives = 646/1033 (62%), Gaps = 78/1033 (7%)

Query: 31   QCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWS-------FDEN 83
            +CSS   + +W+ K Q GTL  +D  E  K   P     +  ++  D +       F E+
Sbjct: 16   ECSSP--LKEWRLKRQAGTLDRSDIIEFLKRESPKYFDYQTSATVKDTNVITLKCMFKES 73

Query: 84   KVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVL 143
              +  + D + EF+   +P    +K+    N  +VCG+VFK GEPTY+CRECG+D TCVL
Sbjct: 74   LAKEEIIDVVVEFMLGDNPSSALEKLRLEGNTATVCGKVFKNGEPTYSCRECGVDPTCVL 133

Query: 144  CVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPD 203
            CV+CFK+S HR HKYKM TS  GGCCDCGD EAWKK+ YC++H+   +   ES  IL   
Sbjct: 134  CVNCFKRSAHRFHKYKMSTSGGGGCCDCGDDEAWKKDQYCELHLANRKNPLES-KILTDA 192

Query: 204  LAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEF 263
            + +R  + F ++L +    L            ++ P   LQ                   
Sbjct: 193  VLERVEICFGAILAFCVSYL------------EIEPNASLQC------------------ 222

Query: 264  HTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRS 323
                            LD  V    V       +   +CTVLYNDE HTF+QVI TL + 
Sbjct: 223  ----------------LDGNVEGGQV-------DGAQYCTVLYNDESHTFDQVIQTLTKI 259

Query: 324  LKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIER--------FTSRHGNRPIKV 375
             KC  KDA+E V  IDREGRA VKC  F  C  LK  IE          ++   N+ ++ 
Sbjct: 260  AKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKVSIENQMILPTSLVSTARNNQSLRT 319

Query: 376  AVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQL 435
            +V++   +A Q +A++LL W Q+ L     FR  FSE  L ++  +   +  IL  D +L
Sbjct: 320  SVLHIGAVACQQFALQLLGWFQEFLVRHYLFRKTFSE--LVQRKQETFCIRHILEYDVKL 377

Query: 436  WKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIY 495
            WK AR  WHRL ISGMLMEY++K   A+ F+++Y +I++DFI DDHDH+FSI S+SVQ++
Sbjct: 378  WKTARTCWHRLLISGMLMEYDNKMILAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLF 437

Query: 496  TVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASF-KRAQYILYDLR 554
            TVP++AH+LIAHE +   LL TF      K  + K L F +NI + +F KRA YILYDLR
Sbjct: 438  TVPSIAHHLIAHEGIFDKLLHTFYHVAIEKFIRNKTLHFSKNIASLTFFKRANYILYDLR 497

Query: 555  YLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHI 614
            YLL + PD  + +LR GF  G + L+ +L+ MQGM+ +TRQ GQHM+YEPEWE AFNLHI
Sbjct: 498  YLLSLKPDVLSNDLRNGFLEGCRALMRVLNVMQGMESMTRQTGQHMDYEPEWECAFNLHI 557

Query: 615  KLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQ-LGEVREVGDHSVACLHYD 673
            KLA  I+  + W   D ++L K Y+ TM+ L ++  I  G+ + + ++V DH   CL YD
Sbjct: 558  KLATTISQVIDWASGDVKLLRKLYKMTMRALVSNSFIVGGEKVMQPKKVADHVANCLVYD 617

Query: 674  VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVM 733
            +S QPVSIHLPLSRF AG+Y+HL   +L++   +  ++     +LTP ++IEPVL TQ M
Sbjct: 618  ISVQPVSIHLPLSRFFAGIYLHLGAHDLTYDGLQTETE-ALSIKLTPREIIEPVLCTQAM 676

Query: 734  ISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKF 793
            I+QV AG+WRRNGY+LL+Q+YFY NV+CR EMLD+DI  LQIGASL+ESNEFLIHVLN+F
Sbjct: 677  IAQVGAGLWRRNGYTLLHQLYFYRNVRCRVEMLDRDIACLQIGASLMESNEFLIHVLNRF 736

Query: 794  NLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKK 853
            N I W+  N+ S    N   + I +  S+ +EFL LLI+I GER+MPG+  V  +D ++K
Sbjct: 737  NTIPWLQENYWSLLSGNEMNDDIIREASIFDEFLELLIVIIGERWMPGVSMVTEEDRLRK 796

Query: 854  EIIQQLCIKPLPHSELNKALPD--DSNHETGLERVINEIADFKKPTQSSGKGVYELKPEF 911
            EIIQ LCIKP  HSEL++ALPD    N +   E VIN +A FKKP  +  KGVYELK   
Sbjct: 797  EIIQLLCIKPYSHSELSRALPDGNSGNSDNVFEEVINTVAVFKKPVGADSKGVYELKEHL 856

Query: 912  YDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVM 971
               +N++FYHY++E+ S++EE QR+RRKA K+L C PPP LP L P F+ + N+LQC V 
Sbjct: 857  LKEFNMYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPKLTPAFTPMANILQCPVF 916

Query: 972  LHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQH 1031
            L++ SL++ER++N  +RSF+E+ L K+LHL+GYA+ EE S +Y F +F +R++++ I + 
Sbjct: 917  LNICSLIMERALNAYSRSFTESHLQKVLHLLGYAIQEELSEHYPFLSFYERSQEYGILEK 976

Query: 1032 IEELCSSPRVEAH 1044
            +EEL   PR+EAH
Sbjct: 977  LEELARCPRLEAH 989

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q6WKZ8\|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2	Back alignment and function description

>sp\|Q8IWV8\|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1	Back alignment and function description

>sp\|Q8IWV7\|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1	Back alignment and function description

>sp\|O70481\|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2	Back alignment and function description

>sp\|P91133\|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=2	Back alignment and function description

>sp\|O60152\|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1	Back alignment and function description

>sp\|O13731\|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1	Back alignment and function description

>sp\|O60014\|UBR1_KLULA E3 ubiquitin-protein ligase UBR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=UBR1 PE=3 SV=2	Back alignment and function description

>sp\|Q6ZT12\|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1363
345480861		1815	PREDICTED: E3 ubiquitin-protein ligase U	0.719	0.539	0.607	0.0
307187669		1784	E3 ubiquitin-protein ligase UBR2 [Campon	0.713	0.544	0.601	0.0
66504949		1779	PREDICTED: e3 ubiquitin-protein ligase U	0.712	0.545	0.616	0.0
322780883		1800	hypothetical protein SINV_80283 [Solenop	0.710	0.537	0.599	0.0
332026215		1800	E3 ubiquitin-protein ligase UBR2 [Acromy	0.711	0.538	0.595	0.0
380014703		1779	PREDICTED: E3 ubiquitin-protein ligase U	0.702	0.537	0.620	0.0
307195539		1786	E3 ubiquitin-protein ligase UBR2 [Harpeg	0.715	0.545	0.606	0.0
91080927		1757	PREDICTED: similar to ubiquitin ligase E	0.696	0.540	0.600	0.0
340710330		1770	PREDICTED: e3 ubiquitin-protein ligase U	0.708	0.545	0.598	0.0
350415865		1770	PREDICTED: E3 ubiquitin-protein ligase U	0.708	0.545	0.599	0.0

>gi\|345480861\|ref\|XP_001606200.2\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Nasonia vitripennis]	Back alignment and taxonomy information

 Score = 1320 bits (3416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1040 (60%), Positives = 785/1040 (75%), Gaps = 60/1040 (5%)

Query: 10   DKMDDSIG---SDMDVEQQLPVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHL 66
            ++ DD+ G   +D+++   +P+ IQ +    V+ W +K +QG LS T FKEHW+VWVP +
Sbjct: 3    NESDDTEGHGINDVELSLTMPI-IQNTCPPCVSIWMEKMRQGVLSNTHFKEHWRVWVPKI 61

Query: 67   LSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMG 126
               EP  +CL+W F+E + Q IL+D LEEFIC+G+P EI +++SQ D PPS+CGRVFK G
Sbjct: 62   YKLEPTDNCLEWVFNEKEAQTILYDPLEEFICNGNPHEILKQLSQNDRPPSICGRVFKAG 121

Query: 127  EPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVH 186
            EPTY+CRECGMD+TCVLCVDCFK+S H+NHKYKMG S  GGCCDCGD EAWKKEP+C +H
Sbjct: 122  EPTYSCRECGMDSTCVLCVDCFKQSAHKNHKYKMGISIGGGCCDCGDTEAWKKEPFCKIH 181

Query: 187  IIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQIT 246
            + G + +    + LP D+AQRA  TF +VL+Y Y L                        
Sbjct: 182  LAGIESKDAPSNKLPDDMAQRAAATFRAVLKYCYDL------------------------ 217

Query: 247  YSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLY 306
                                   L+ ++ PS+P DL +   D   ++   ++D +CTVL+
Sbjct: 218  -----------------------LSMEHSPSLPNDLCIK-NDEDSVSLLASNDTYCTVLF 253

Query: 307  NDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTS 366
            NDE HTF+QVI TL R +KCSQ+DAIE+VTNIDREGRA VKCS F HC +LKSEIE+FTS
Sbjct: 254  NDETHTFDQVIITLTRVIKCSQRDAIEYVTNIDREGRAVVKCSGFQHCNELKSEIEKFTS 313

Query: 367  RHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVE 426
            RH +RP+KV V ++ V+AHQI+AM+LL WLQ+ + + E FR++FS+V L +K PD+ IV+
Sbjct: 314  RHNSRPLKVLVEHAHVVAHQIFAMKLLGWLQQFISHCEGFRLIFSDVALNDKMPDIPIVK 373

Query: 427  GILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFS 486
            GIL++D QLWKAAR  WHRLFISGML EYESKK+ A  FT  YG+++KDFI+DDHDHS+S
Sbjct: 374  GILIRDYQLWKAARTCWHRLFISGMLTEYESKKALAIDFTNNYGTVLKDFIRDDHDHSYS 433

Query: 487  IGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRA 546
            I S++VQ++TVPTLAH+LIAH D L IL +TFISE +R+ N   KLEFERN PN +FKRA
Sbjct: 434  IASLAVQLFTVPTLAHHLIAHHDALLILFNTFISESSRRCNAAGKLEFERNAPNNAFKRA 493

Query: 547  QYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEW 606
            QYILYDLRYLL   P+TWT ELR+GF  G+  LL LL  MQ MD V RQVGQHMEYE EW
Sbjct: 494  QYILYDLRYLLSAKPETWTDELRRGFLQGVSLLLQLLGSMQWMDAVVRQVGQHMEYEQEW 553

Query: 607  ESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHS 666
            ESAFNL+IKL+PVI+L L+WCG+D+ +LIKA+R  +K L    G         REV DHS
Sbjct: 554  ESAFNLYIKLSPVISLALEWCGSDRIVLIKAFRLVLKKLEEQPG---KAPTNFREVADHS 610

Query: 667  VACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEP 726
             +C+HYDVST+PVSIHLPLSRFLAGL++HL+K++L+F   E  +     S+ TPE++IEP
Sbjct: 611  ASCIHYDVSTEPVSIHLPLSRFLAGLFLHLEKYDLTFQGTEFQT----LSKPTPEEIIEP 666

Query: 727  VLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFL 786
            VLR Q MISQVHAGMWRRNGYSL++Q+YFYHNVKCR EMLDKDI+LLQ GA+LIESNEFL
Sbjct: 667  VLRAQAMISQVHAGMWRRNGYSLIHQLYFYHNVKCRTEMLDKDIVLLQAGAALIESNEFL 726

Query: 787  IHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVA 846
            IH+LNKFNLINW   +FE+  LK  EE+SIRQTI+LVEEFL LLI I GERY+PG+GRV 
Sbjct: 727  IHILNKFNLINWAQPDFETALLKTCEEDSIRQTINLVEEFLALLITIIGERYVPGVGRVT 786

Query: 847  SDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKP-TQSSGKGVY 905
             DDC+K+EIIQQLCIKPL HSELNK LPDD +HETG+ERVI+E+ADFKKP   S+GKGVY
Sbjct: 787  QDDCLKREIIQQLCIKPLSHSELNKTLPDDVHHETGMERVIHEVADFKKPQVVSAGKGVY 846

Query: 906  ELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNL 965
            ELK  FY  YNVFFYHY++EE+S+SEE QRKRRK   ELEC PPPKLP L    S+VTNL
Sbjct: 847  ELKFNFYSEYNVFFYHYTKEELSKSEEAQRKRRKTVGELECCPPPKLPRLTEMLSLVTNL 906

Query: 966  LQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEK 1025
            LQCDVML +M++VL R+++L+ARSFSE Q+HKILHLIGYAL E+ESG Y F  FT+RA K
Sbjct: 907  LQCDVMLSIMNIVLTRTLDLKARSFSEPQVHKILHLIGYALQEQESGYYPFLAFTERATK 966

Query: 1026 WNIEQHIEELCSSPRVEAHK 1045
            W+I + +E   +SPR+EAHK
Sbjct: 967  WDIYKLLETTQNSPRIEAHK 986

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307187669\|gb\|EFN72641.1\| E3 ubiquitin-protein ligase UBR2 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|66504949\|ref\|XP_394362.2\| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|322780883\|gb\|EFZ10112.1\| hypothetical protein SINV_80283 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|332026215\|gb\|EGI66357.1\| E3 ubiquitin-protein ligase UBR2 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|380014703\|ref\|XP_003691360.1\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Apis florea]	Back alignment and taxonomy information

>gi\|307195539\|gb\|EFN77425.1\| E3 ubiquitin-protein ligase UBR2 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|91080927\|ref\|XP_974039.1\| PREDICTED: similar to ubiquitin ligase E3 alpha [Tribolium castaneum] gi\|270005384\|gb\|EFA01832.1\| hypothetical protein TcasGA2_TC007434 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|340710330\|ref\|XP_003393745.1\| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350415865\|ref\|XP_003490772.1\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1363
FB\|FBgn0030809		1824	CG9086 [Drosophila melanogaste	0.543	0.406	0.478	2.6e-286
UNIPROTKB\|J9P5Z7		1755	UBR2 "Uncharacterized protein"	0.548	0.426	0.418	9.7e-261
MGI\|MGI:1861099		1755	Ubr2 "ubiquitin protein ligase	0.549	0.426	0.413	2e-260
UNIPROTKB\|E1C1D2		1755	UBR2 "Uncharacterized protein"	0.545	0.423	0.419	4.2e-260
UNIPROTKB\|E2RHB2		1755	UBR2 "Uncharacterized protein"	0.548	0.426	0.414	1.1e-259
UNIPROTKB\|E1BCW1		1756	UBR2 "Uncharacterized protein"	0.550	0.427	0.412	3e-257
ZFIN\|ZDB-GENE-081107-29		1730	ubr2 "ubiquitin protein ligase	0.542	0.427	0.401	2.8e-250
UNIPROTKB\|D4A9U6		1754	Ubr2 "Protein Ubr2" [Rattus no	0.548	0.426	0.413	2.2e-246
UNIPROTKB\|F1P5I1		1737	UBR1 "Uncharacterized protein"	0.521	0.409	0.388	3.3e-224
UNIPROTKB\|E2QV58		1750	UBR1 "Uncharacterized protein"	0.549	0.428	0.373	2.1e-222

FB\|FBgn0030809 CG9086 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1815 (644.0 bits), Expect = 2.6e-286, Sum P(3) = 2.6e-286
 Identities = 362/756 (47%), Positives = 495/756 (65%)

Query:   301 FCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSE 360
             +CTVLYNDE HTF+QVI TL +  KC  KDA+E V  IDREGRA VKC  F  C  LK  
Sbjct:   237 YCTVLYNDESHTFDQVIQTLTKIAKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKVS 296

Query:   361 IER--------FTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSE 412
             IE          ++   N+ ++ +V++   +A Q +A++LL W Q+ L     FR  FSE
Sbjct:   297 IENQMILPTSLVSTARNNQSLRTSVLHIGAVACQQFALQLLGWFQEFLVRHYLFRKTFSE 356

Query:   413 VCLEEKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSI 472
               L ++  +   +  IL  D +LWK AR  WHRL ISGMLMEY++K   A+ F+++Y +I
Sbjct:   357 --LVQRKQETFCIRHILEYDVKLWKTARTCWHRLLISGMLMEYDNKMILAQEFSRRYATI 414

Query:   473 MKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKL 532
             ++DFI DDHDH+FSI S+SVQ++TVP++AH+LIAHE +   LL TF      K  + K L
Sbjct:   415 VEDFISDDHDHAFSIVSLSVQLFTVPSIAHHLIAHEGIFDKLLHTFYHVAIEKFIRNKTL 474

Query:   533 EFERNIPNASF-KRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDE 591
              F +NI + +F KRA YILYDLRYLL + PD  + +LR GF  G + L+ +L+ MQGM+ 
Sbjct:   475 HFSKNIASLTFFKRANYILYDLRYLLSLKPDVLSNDLRNGFLEGCRALMRVLNVMQGMES 534

Query:   592 VTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGI 651
             +TRQ GQHM+YEPEWE AFNLHIKLA  I+  + W   D ++L K Y+ TM+ L ++  I
Sbjct:   535 MTRQTGQHMDYEPEWECAFNLHIKLATTISQVIDWASGDVKLLRKLYKMTMRALVSNSFI 594

Query:   652 DLGQ-LGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLS 710
               G+ + + ++V DH   CL YD+S QPVSIHLPLSRF AG+Y+HL   +L++   +  +
Sbjct:   595 VGGEKVMQPKKVADHVANCLVYDISVQPVSIHLPLSRFFAGIYLHLGAHDLTYDGLQTET 654

Query:   711 DNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDI 770
             +     +LTP ++IEPVL TQ MI+QV AG+WRRNGY+LL+Q+YFY NV+CR EMLD+DI
Sbjct:   655 E-ALSIKLTPREIIEPVLCTQAMIAQVGAGLWRRNGYTLLHQLYFYRNVRCRVEMLDRDI 713

Query:   771 ILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLL 830
               LQIGASL+ESNEFLIHVLN+FN I W+  N+ S    N   + I +  S+ +EFL LL
Sbjct:   714 ACLQIGASLMESNEFLIHVLNRFNTIPWLQENYWSLLSGNEMNDDIIREASIFDEFLELL 773

Query:   831 ILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDS--NHETGLERVIN 888
             I+I GER+MPG+  V  +D ++KEIIQ LCIKP  HSEL++ALPD +  N +   E VIN
Sbjct:   774 IVIIGERWMPGVSMVTEEDRLRKEIIQLLCIKPYSHSELSRALPDGNSGNSDNVFEEVIN 833

Query:   889 EIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYXXXXXXXXXXXXXXXXXXXXXXXCVX 948
              +A FKKP  +  KGVYELK      +N++FYHY                       C  
Sbjct:   834 TVAVFKKPVGADSKGVYELKEHLLKEFNMYFYHYTKEDKSKAEELQRERRKAKKQLVCCP 893

Query:   949 XXXXXXXXXXFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHE 1008
                       F+ + N+LQC V L++ SL++ER++N  +RSF+E+ L K+LHL+GYA+ E
Sbjct:   894 PPMLPKLTPAFTPMANILQCPVFLNICSLIMERALNAYSRSFTESHLQKVLHLLGYAIQE 953

Query:  1009 EESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAH 1044
             E S +Y F +F +R++++ I + +EEL   PR+EAH
Sbjct:   954 ELSEHYPFLSFYERSQEYGILEKLEELARCPRLEAH 989

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB\|J9P5Z7 UBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1861099 Ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1D2 UBR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHB2 UBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BCW1 UBR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081107-29 ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A9U6 Ubr2 "Protein Ubr2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P5I1 UBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QV58 UBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1363
pfam02207		71	pfam02207, zf-UBR, Putative zinc finger in N-recog	7e-27
smart00396		71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	1e-24
pfam02617		78	pfam02617, ClpS, ATP-dependent Clp protease adapto	7e-13

>gnl\|CDD\|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)	Back alignment and domain information

 Score =  104 bits (261), Expect = 7e-27
 Identities = 39/70 (55%), Positives = 46/70 (65%)

Query: 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEA 176
           SVCG VFK G+P Y C  C +D TCV+C +CF  S H+ H      S  GGCCDCGD EA
Sbjct: 1   SVCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDPEA 60

Query: 177 WKKEPYCDVH 186
           WKKE +C +H
Sbjct: 61  WKKEGFCKLH 70

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl\|CDD\|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

>gnl\|CDD\|217146 pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1363
KOG1140\|consensus		1738		100.0
smart00396		71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	99.83
PF02207		71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.76
KOG1140\|consensus		1738		99.69
PF02617		82	ClpS: ATP-dependent Clp protease adaptor protein C	99.44
KOG1139\|consensus		784		99.37
PRK00033		100	clpS ATP-dependent Clp protease adaptor protein Cl	98.74
PRK13019		94	clpS ATP-dependent Clp protease adaptor; Reviewed	98.42
KOG1139\|consensus		784		97.09
PF10390		284	ELL: RNA polymerase II elongation factor ELL ; Int	96.9
COG2127		107	Uncharacterized conserved protein [Function unknow	94.84
KOG1777\|consensus		625		93.17
KOG0943\|consensus		3015		85.33
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	83.94
PF09538		108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.64
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	82.12
KOG2752\|consensus		345		81.36
KOG4796\|consensus		604		81.13

>KOG1140\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.5e-112  Score=1086.15  Aligned_cols=846  Identities=27%  Similarity=0.404  Sum_probs=618.2

Q ss_pred             CCccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEEecCCCccccCCCccccCCCCCCCcCCCCCcCc
Q psy353          114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKR  193 (1363)
Q Consensus       114 ~~~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~~~~~~~  193 (1363)
                      ..+..|||||++||++|+|.+|+.|+||++|..||+...|+-|.+.|++..++|.|||||++||..+..|+.|....++.
T Consensus        11 ~~g~~c~~~~~~~e~~y~c~~c~~~~~~~~c~~c~~~~~~~~~~~~v~~~~~~~~c~cgd~da~n~~~~~~~~~~~~~~~   90 (1738)
T KOG1140|consen   11 HTGRNCGRVFKIGEPTYRCHECGTDDTCVLCIHCPEVHVNHSVCTKVHTEFTSGICDCGDEDAWNSPLHCKAEEQEDDIS   90 (1738)
T ss_pred             hcccccccccccCCceEEEEecCCCcchhHHHhcchhhhhhhhcceeEecccccccCCCChhhccCcchHHHHhcccccc
Confidence            35789999999999999999999999999999997766666666788988899999999999999999999998776543


Q ss_pred             CCC-CCCC---CHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCCCcccchhcccCCCccccccccccccchhhh
Q psy353          194 HES-GSIL---PPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPL-DLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQ  268 (1363)
Q Consensus       194 ~~~-~~~l---p~~l~~~~~~~~~~vl~y~~d~l~~~~~~~LP~-~L~~~~k~~~~~~~~~~~~~~~~vl~~de~~~~s~  268 (1363)
                      ... ...+   -++.+..  .....+++|..|++.-.+. .+|. +...+.+  .+..+.......+....+++...+  
T Consensus        91 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~--  163 (1738)
T KOG1140|consen   91 ETNAAIKEEDVENDSVNI--ALVELVLDYFIDVFNQNIE-PLPTIQKDITNE--LREMTQQGYMYERAQFENDLKYEN--  163 (1738)
T ss_pred             hhhccchhhhhhhHHHHh--hccHHHHHHHHHHhhccch-hccccCccccch--HHHHhhhhhhhhhhhhhccccccc--
Confidence            210 0111   1111111  1223345777777763211 1121 1111100  000011111111122222222100  


Q ss_pred             cccccCCCCC------CCCCCCCCcchhhhcccCCCCceEEEEecCCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcccC
Q psy353          269 LLTTDYGPSI------PLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREG  342 (1363)
Q Consensus       269 l~~~~yg~~~------~~d~~~~~~~~~~~~~~~~~~~y~vvL~NDE~HtfdqVi~~L~~a~~~s~~~A~~~A~~ID~~G  342 (1363)
                      .... .|-+.      +.+ .+.++++       ..+.+.++-++++.|.|.++++..+.....+ ..+.+-...||-+|
T Consensus       164 ~~~~-~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  233 (1738)
T KOG1140|consen  164 DYMF-DGKTTAKTSPSNSP-EASPSLA-------KPENYTVITYIDNYVNYSQATTAARQGVPDN-VHIDLSTSRIDGEG  233 (1738)
T ss_pred             cccc-CCcchhhccccccc-ccChhhc-------ccccccceEEeccchhhhhcchHHhcCCCcc-ceeccccceecchh
Confidence            0000 00000      000 0000111       0245778889999999999998887776544 33556666778888


Q ss_pred             CeEEEccCcccchhHHHHHhhhcccCCCCCcEEEEEehHHHHHHHHHHHHHHHHHHHhcc-----ChhHHHHHhhhhc--
Q psy353          343 RAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGY-----SESFRMLFSEVCL--  415 (1363)
Q Consensus       343 RavVk~~~~~~c~~~k~~I~~f~~~~~s~~L~v~v~~~~~~~~q~~~~~ll~WL~~~~~~-----s~~fR~i~c~~ll--  415 (1363)
                      +  .+.+.      .-.++.+.+-+..+.+|..+++.+..+.+++.+..+..|   ...+     .-.++.-..+...  
T Consensus       234 ~--~~~~~------~~~~~~~~~~~~~~~~l~~el~~~~e~~~~ea~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~  302 (1738)
T KOG1140|consen  234 R--LKQNQ------DISLLLGGFFAVDTNGLTDELTSWSEYLHQEACKYIINR---CLNIPDSSFQTTSRNMVGKTLCSE  302 (1738)
T ss_pred             h--hhhcc------chhhhhcchhhhhcccchhhhHHHHHHHHHHhhhhhhhh---hhcccchHHHHHHHHHhccccCcc
Confidence            7  23222      222222222222445899999999999999999999999   2221     1112211111110  


Q ss_pred             -------c------CCC---------------------------------C-------ChhHHHHHhhhcccchHHHHHH
Q psy353          416 -------E------EKA---------------------------------P-------DLSIVEGILVKDSQLWKAARLH  442 (1363)
Q Consensus       416 -------~------~~p---------------------------------~-------~~s~l~~Lll~D~rlWK~~R~~  442 (1363)
                             +      .++                                 +       ...++++++++|.++||+.|.+
T Consensus       303 ~~~~~l~~~~~~~~~d~d~~~~~~~~~~~~~d~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~il~~d~~~~kr~r~~  382 (1738)
T KOG1140|consen  303 YLNATLCGDMTPVVEDYDSNKFDKNDPENYIDLSILADGNNAPLRHHALSPSSSHSLSPFIRLQHILLFDNRYWKRLRKD  382 (1738)
T ss_pred             cccccccCCccccccCchhhhccccchhhcccHHHHhhhhcccchhhhcCCCchhccchhHHHHHHHHHHHHHHHHHHHH
Confidence                   0      000                                 0       1258999999999999999999


Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccceeEEEeccchhHHHHHHhhhCHHHHH---HHHHH
Q psy353          443 WHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFIL---LSTFI  519 (1363)
Q Consensus       443 l~~L~i~tLl~~~e~K~~fa~~F~~~Y~~L~~~fl~dD~e~~~SI~~LSVQLFTvPSla~~Lv~~~nll~~l---l~t~~  519 (1363)
                      ++.++++++.++.++|+.||.+|+.+|..+.++|+.+||+++.+++.++||+||||++|..+++...+...+   +++|+
T Consensus       383 l~k~~~~~~~~~~~~k~~~~~~~~~~y~~~~~~~~~~d~e~~~~vi~~~vqf~t~~~~a~~~~~~~~~~~l~~~~~~~~~  462 (1738)
T KOG1140|consen  383 LQKVIIPTFASSNLYKPIFAQQFVEHYNSITRDFAYMDREPDLSVIELSVQFFTCPSLAKNIVENQSFLDIVWSIIDIFK  462 (1738)
T ss_pred             HhhcceeehhcchHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhheeeeecCcHHHHHhhhhccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998899999999999999999998855554   34555


Q ss_pred             HHhhhhccCCCceeeeec--CCc-----ccccchhHhhhchhhhccCCCCCCChHHHhhhhhhHHHHHHHHHHhcCCCce
Q psy353          520 SECTRKLNKKKKLEFERN--IPN-----ASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEV  592 (1363)
Q Consensus       520 ~~~~~~~~~~g~l~f~~~--~~~-----~~frR~~~i~~DLrYlLs~~~~~~~~~lr~~fl~~~~~~L~lL~l~QGm~p~  592 (1363)
                      .+..   ..++...++..  +..     .++||.++.|.|+ +.+.++   |    +..|.++|..++.+++.||||+|+
T Consensus       463 ~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~r~l~~~~~l-~~~~~~---~----~~~~~~~~~~~l~~~~v~qg~~~l  531 (1738)
T KOG1140|consen  463 EFNK---VEGGVLIDIRVQKSNLLKRYSISFRRTLYTFEDL-SKVHDP---N----IPLRPKEFISLLLLLKVFQGVDPL  531 (1738)
T ss_pred             Hhcc---cccceecceeeeechhhhHHHHHHHHHHHHHHHh-hccCCc---c----ccccHHHHHHHHHHHHHhCCccHH
Confidence            5432   12333333332  222     1456777777777 665543   3    556778999999999999999999


Q ss_pred             eccccccccccccchhhhHHHHhHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCCccceeeeCCccceeeee
Q psy353          593 TRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHY  672 (1363)
Q Consensus       593 ~R~~geHVEyE~eW~~aF~l~~~l~~ii~~~~~~~~~d~~~L~~ai~~~l~~L~~~~~~~~~~~~~~~~l~~~s~~ii~f  672 (1363)
                      +|+.++||++|.+|+.+|.+.++++.+++++++||.+++.+...+.+.+..+++.....-...+....++++++.+++.|
T Consensus       532 kr~~~ehv~~e~~~~~~~~~v~~~t~~~s~i~~~~~~~ep~~~~~~~~l~~~~~r~~~s~~~~~~l~~~i~~~S~e~i~f  611 (1738)
T KOG1140|consen  532 KREELEHVEVEKEWENFFSLVEYLTAIYSMIQSLVKTSEPVKDSVYKKLLEAAIRIHPSLTGSESLTYTICGESHETINF  611 (1738)
T ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhhcccccCccceeeehhhhhhHhHhhh
Confidence            99999999999999999999999999999999999988777667777776666532211111122345678999999999


Q ss_pred             eecCCceeeechHHHHHHHHHHHHhhcccchhhhhhhccccCCCCCC-hhhhhhhhHHHHHHHhhhhhcccccccHhHHH
Q psy353          673 DVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLT-PEQLIEPVLRTQVMISQVHAGMWRRNGYSLLN  751 (1363)
Q Consensus       673 dVs~~~VSfH~PLhr~LA~L~~~l~~~~~~~~~~el~~~~~~~~~~~-~~~L~e~PLR~~Vl~AQI~AGmWvRNG~sl~~  751 (1363)
                      +|+.++||||+|+.|+|++++ .+....+.....+..    +..+.+ ..+|.|||||++|++|||.+|||||||+|+.+
T Consensus       612 ~v~~~~~sv~~p~~~~l~~l~-~~~~s~v~~~~d~~~----~~~~~~n~~~i~e~~lr~~Vl~aqid~~~w~rNG~si~~  686 (1738)
T KOG1140|consen  612 SVSQERVSVSNPVSRLLAFLI-ELSCSSVVSLKDAYE----RLEDCSNFLAISEHSLRVLVLCAQIDVGFWVRNGFSILH  686 (1738)
T ss_pred             ccccccceeeccHHHHhhhhh-hcccchhhhcchhhh----hHhhhccchhhcccchhheeeeeecceeeEeecCcchhh
Confidence            999999999999999999986 333222222222221    122222 77999999999999999999999999999999


Q ss_pred             HHHHcccCccccchhhhhHHHHHHHhhccChHHHHHHHHHhccccccccccccCCCCCCchhhHHhhhHHHHHHHHHHHH
Q psy353          752 QIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLI  831 (1363)
Q Consensus       752 Q~~~Y~~~~~r~~~~d~DI~LLQi~a~l~dp~~fL~~iL~RF~L~~W~~~~~~~~~~~~~~eD~~~q~~~l~EefL~lLI  831 (1363)
                      |+++|++.+||+++||+||+++|.++++.||++|+.++++||+|.+|+++.++...     .|..++...|+|+|+.+||
T Consensus       687 q~~~y~~~~~r~~~y~~DI~~~Q~~la~~d~~~~l~~~l~r~~L~~w~~g~~~~~~-----~d~~~~i~~~~ee~l~lii  761 (1738)
T KOG1140|consen  687 QAAYYKNNPCRNESYDRDILMLQTGLAMEDPNRFLFTILSRFELLDWFTGEVDYQS-----NDTEDTISFMIEEFLALII  761 (1738)
T ss_pred             hhHhhcCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCcccc-----ccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999865543     2445688899999999999


Q ss_pred             HHhccccCCCCCCCCcHHHHHHHHHHHHhcCCCChHHHhhhCCCCCCCcchHHHHHHHhhcccCCCcCCCCceeeecccc
Q psy353          832 LITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEF  911 (1363)
Q Consensus       832 ~LlteR~~~g~~~~t~~~~irreIIh~Lc~~p~t~SeL~~~lpe~~~~~~~fe~iL~eVA~Fk~P~g~~d~G~Y~LK~E~  911 (1363)
                      .|++||...|++.+..++.+|++|||+||++|++||+|.+++|++++.+..||.++++||+|++|.|..+.|+|+||+|+
T Consensus       762 ~ll~Er~~~~~~kv~~~d~~k~~iIh~L~~~~lays~lv~s~~~dl~~~l~~d~~~e~Va~~~~p~~~~~~gvf~lK~~~  841 (1738)
T KOG1140|consen  762 LLLTERSYFGSSKVRRMDIIKSEIIHILCFKPLSYSQLVRKIPHDLTKTLSFDEALEEVAVFKKPKGLADNGVFVLKESY  841 (1738)
T ss_pred             HHHHheeecccccccHHHHHHHHHHHHHHhcchhHHHHHHhchhhhhhcccchHHHHHHHhhccCCccccceEEEechhh
Confidence            99999988899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccccCChHHHHHHHHHHHH-HHHhccCCccCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHHhhcccCCCC
Q psy353          912 YDGYNVFFYHYSREEVSRSEEEQRK-RRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSF  990 (1363)
Q Consensus       912 ~~e~DPyf~hYsr~~~~~Ae~~~kk-~~K~~~~~~~~ppP~lp~~~~~F~~l~~il~s~~f~~ii~~vL~~al~~~~~~~  990 (1363)
                      |++|||||+||++++|++++..+++ +.++++...+.+||.+|.+...|+...++|-+.+...+...++++++...-...
T Consensus       842 ~~~~dpy~~~~s~s~q~~se~~~~k~~~~~~k~~~A~~~~i~~~~~~ll~~~~~~L~~~t~~~~~~~ii~r~~~~~~~~~  921 (1738)
T KOG1140|consen  842 YDEVDPYYKHLSKSEQSESEATIRKSRLAKKKDVIALVPPILPKFIKLLKKGADILGAAVRLTVFGLIIYRTLEHCLFME  921 (1738)
T ss_pred             hhhcCchhhhhhHhHHhhhhHHHHHHHHHHhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865 444443333555566666666665555555555555555555555554322235


Q ss_pred             CHHHHHHHH-HHHHhhhcc
Q psy353          991 SEAQLHKIL-HLIGYALHE 1008 (1363)
Q Consensus       991 sE~~L~~~L-HLi~lal~e 1008 (1363)
                      ++++++.++ |++++|+++
T Consensus       922 s~~~l~~~~~~ihG~~~~~  940 (1738)
T KOG1140|consen  922 SSTLLSKVLHLIHGIALNE  940 (1738)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            899999999 555666654

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1140\|consensus	Back alignment and domain information

>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP	Back alignment and domain information

>KOG1139\|consensus	Back alignment and domain information

>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed	Back alignment and domain information

>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed	Back alignment and domain information

>KOG1139\|consensus	Back alignment and domain information

>PF10390 ELL: RNA polymerase II elongation factor ELL ; InterPro: IPR019464 ELL is a family of RNA polymerase II elongation factors	Back alignment and domain information

>COG2127 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1777\|consensus	Back alignment and domain information

>KOG0943\|consensus	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>KOG2752\|consensus	Back alignment and domain information

>KOG4796\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1363
3ny1_A		77	Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Liga		2e-25
3ny2_A		75	Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase L		1e-19
3nit_A		90	The Structure Of Ubr Box (Native1) Length = 90		5e-12
3nih_A		82	The Structure Of Ubr Box (Riaaa) Length = 82		7e-12

>pdb|3NY1|A Chain A, Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Ligase Length = 77

Back alignment and structure

Iteration: 1

Score = 115 bits (287), Expect = 2e-25, Method: Composition-based stats. Identities = 45/69 (65%), Positives = 54/69 (78%) Query: 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAW 177 +CGRVFK GE TY+CR+C +D TCVLC+DCF+ S H+NH+YKM TS GG CDCGD EAW Sbjct: 7 LCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAW 66 Query: 178 KKEPYCDVH 186 K P+C H Sbjct: 67 KTGPFCVNH 75

PyMOL of 3ny1

>pdb|3NY2|A Chain A, Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase Length = 75

Back alignment and structure

>pdb|3NIT|A Chain A, The Structure Of Ubr Box (Native1) Length = 90

Back alignment and structure

>pdb|3NIH|A Chain A, The Structure Of Ubr Box (Riaaa) Length = 82

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1363
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	6e-32
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	4e-31
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	1e-05

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75	Back alignment and structure

 Score =  118 bits (297), Expect = 6e-32
 Identities = 46/73 (63%), Positives = 57/73 (78%)

Query: 114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGD 173
              S+CGRVFK+GEPTY+CR+C +D TCVLC++CF  S HR+H+Y+M TS  GG CDCGD
Sbjct: 2   PLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGD 61

Query: 174 VEAWKKEPYCDVH 186
            EAWK+ PYC  H
Sbjct: 62  TEAWKEGPYCQKH 74

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Length = 82	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 54.5 bits (130), Expect = 3e-07
 Identities = 88/657 (13%), Positives = 189/657 (28%), Gaps = 180/657 (27%)

Query: 311 HTFEQVINTLVRSLKCSQKDAIE-----FVTNIDREGRAAVKCSNFSHCEDLKSEIERFT 365
           H     ++      +   KD +      FV N D               +D+   I    
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFD-----------CKDVQDMPKSI---- 45

Query: 366 SRHGNRPIKVAVVNSVVIA-HQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSI 424
                  +    ++ ++++   +     L W   +L   E     F              
Sbjct: 46  -------LSKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKF-------------- 82

Query: 425 VEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSF----ARVFTKKYGSIMKDFIK-- 478
           VE +L  + + +  + +   +   S M   Y  ++       +VF K   S ++ ++K  
Sbjct: 83  VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 479 ----DDHDHSFSI-----GS------------------MSVQIYTVPTLAHY------LI 505
               +       +     GS                  M  +I+ +  L +       L 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLE 200

Query: 506 AHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYI--LYDLRYLLGVPPDT 563
             + +L+ +   + S      N K ++   +       K   Y   L  L        + 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NV 253

Query: 564 WTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLF 623
              +    F    + LL    + Q  D ++     H+  +             +    L 
Sbjct: 254 QNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKS----LL 307

Query: 624 LQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGE-VREVGDHSVACLHYDVSTQPVSIH 682
           L++     + L +    T     +        + E +R+         H +         
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS-------IIAESIRDGLATWDNWKHVNCDK------ 354

Query: 683 LPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFF--SRLTPEQLIEPVL-------RTQVM 733
             L+  +      L+        R++      F  S   P  L+  ++          V+
Sbjct: 355 --LTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVV 407

Query: 734 ISQVHAGMWRRNGYSLLNQ-----IYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIH 788
           ++++H        YSL+ +          +              + +   +   NE+ +H
Sbjct: 408 VNKLHK-------YSLVEKQPKESTISIPS--------------IYLELKVKLENEYALH 446

Query: 789 --VLNKFNLINWVYVNFESNSLKNPEEES-IRQTISLVEEFLHLLILITGERY--MPGIG 843
             +++ +N+       F+S+ L  P  +      I       HL  +   ER      + 
Sbjct: 447 RSIVDHYNIPK----TFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMV- 496

Query: 844 RVASDDCIKKEIIQQLCIKPLPHSELNKALPDD-------SNHETGLERVINEIADF 893
                  ++++I           S LN  L           +++   ER++N I DF
Sbjct: 497 -FLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDF 551

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.9 bits (118), Expect = 6e-06
 Identities = 93/629 (14%), Positives = 175/629 (27%), Gaps = 214/629 (34%)

Query: 707  ELLSDNCFF--SRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNE 764
            E+L  N  F  S +  EQ  +P + T++ I Q    ++  N      Q++  +NV  R +
Sbjct: 85   EVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQ-RDRLYNDN------QVFAKYNV-SRLQ 135

Query: 765  MLDKDIILLQIGASLIESNEFL-IH-------------------VLNKFNL-INWVYVNF 803
               K    L+     +   + + I                    V  K +  I W+    
Sbjct: 136  PYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---- 187

Query: 804  ESNSLKNPEEESIRQTISLVEEFLHLLI--LITGERYMPGIGRVASDDCIKKEIIQQLCI 861
               +LKN    S    + ++++ L+ +     +   +   I ++     I+ E+ + L  
Sbjct: 188  ---NLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHS-IQAELRRLLKS 240

Query: 862  KPLPHSELNKALPDDSNHETGLERVINEIADFKKPT--QSSGKGVYELKPEFYDGYNVFF 919
            KP  +  L   L  +  +     +  N   +        +  K V +    F        
Sbjct: 241  KPYENCLL--VL-LNVQNA----KAWNAF-NLSCKILLTTRFKQVTD----FLSAATT-- 286

Query: 920  YHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVL 979
             H S +  S +      +    K L+C  P  LP  +                  +S+  
Sbjct: 287  THISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREV-----------LTTNPRRLSI-- 332

Query: 980  ERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKW---NIEQHIEELC 1036
                                  I  ++ +               + W   N ++    + 
Sbjct: 333  ----------------------IAESIRD----------GLATWDNWKHVNCDKLTTIIE 360

Query: 1037 SSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPA--LCLIC 1094
            SS  +           LE       P +Y ++ + +S+F         +  P   L LI 
Sbjct: 361  SS--LNV---------LE-------PAEYRKMFDRLSVF------PPSAHIPTILLSLIW 396

Query: 1095 GDMLCSQSYCCQ--TELFFKMSV-------GACTYHSHF------CGAGVGMFLRVRECE 1139
             D+                K S+          +  S +            +   + +  
Sbjct: 397  FDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 1140 VLFLASPNRGCFMSPPYLDDY--------------GETDQGLRR--------GNPLRLCK 1177
             +     +      PPYLD Y               E     R            +R   
Sbjct: 454  NIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 1178 ----------------ERYKKLQRLWLSHGIHEEISRSIE-----ASHNLITTHCAGLLD 1216
                            + YK    +  +   +E +  +I         NLI +    LL 
Sbjct: 512  TAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 1217 KPGVIKLMKKWKSNEKLKVKTERDKSIAK 1245
                I LM      E   +  E  K + +
Sbjct: 570  ----IALM-----AEDEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.5 bits (117), Expect = 9e-06
 Identities = 112/810 (13%), Positives = 210/810 (25%), Gaps = 303/810 (37%)

Query: 80  FDENKVQ----NILFDSLEEFICD-------GSPEEIFQK--VSQMDNPPSVCGRVFKMG 126
           F+  + Q    +IL    + F+ +         P+ I  K  +  +           ++ 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL- 67

Query: 127 EPTYNCRECGMDATCVLCVDCFKKSTHR-NHKYKMGTSNAGGCCDCGDVEAWKKEPYCDV 185
              +       +      V  F +   R N+K+ M                 K E     
Sbjct: 68  ---FWTLLSKQEEM----VQKFVEEVLRINYKFLM--------------SPIKTEQ---- 102

Query: 186 HIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVP-PEDVLQ 244
                               Q + +T      Y  Q         +     V   +  L+
Sbjct: 103 -------------------RQPSMMT----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 245 ITYSHNSDNFCTVLYNDEFHTF----------EQLLTT----DYGPSIPLDLKV------ 284
           +            L                  +  +       Y     +D K+      
Sbjct: 140 LR---------QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 285 ---PPEDVLQI---TYSHNSDNFCTVLYNDE--FHTFEQVINTLVRSLKCSQ-KDAIEFV 335
               PE VL++          N+ +   +          +   L R LK    ++ +  +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 336 TNI-DREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLT 394
            N+ + +   A    N   C+ L       T+R         V + +  A   +    L 
Sbjct: 251 LNVQNAK---AWNAFNL-SCKIL------LTTRF------KQVTDFLSAATTTH--ISLD 292

Query: 395 WLQKVLGYSESFRMLFSEVCLEEKAPDL--SIVEGILVKDSQLWKAARLHWHRLFISGML 452
                L   E  + L  +  L+ +  DL   ++     + S + ++ R            
Sbjct: 293 HHSMTLTPDEV-KSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------ 344

Query: 453 MEYESKKSFARVFTKKYGSIMKDFIK--DDHDH-----SFSIGSMSVQIYTVPTLAHYLI 505
            +      +  V   K  +I++  +   +  ++       S+   S  I   P       
Sbjct: 345 -DN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---P------- 388

Query: 506 AHEDVLFILLSTFISECTRK-LNK--KKKLEFERNIPNASFKRAQYILYDLRYLLGVPPD 562
               +L ++    I       +NK  K  L  ++       K +   +  +         
Sbjct: 389 --TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP------KESTISIPSI--------- 431

Query: 563 TWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITL 622
                            L+L                 +E E        LH         
Sbjct: 432 ----------------YLELK--------------VKLENEYA------LHRS------- 448

Query: 623 FLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIH 682
                      ++  Y    KT  +D   DL      +    H    + +         H
Sbjct: 449 -----------IVDHYNIP-KTFDSD---DLIPPYLDQYFYSH----IGH---------H 480

Query: 683 LPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGM- 741
           L           H ++  L F  R +  D  F         +E  +R        H    
Sbjct: 481 LKNIE-------HPERMTL-F--RMVFLDFRF---------LEQKIR--------HDSTA 513

Query: 742 WRRNGY--SLLNQIYFYHNVKCRN----EMLDKDII--LLQIGASLIESNEF-LIHVLNK 792
           W  +G   + L Q+ FY    C N    E L   I+  L +I  +LI S    L+ +   
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI--- 570

Query: 793 FNLINWVYVNFESNSLKNPE----EESIRQ 818
                         +L   +    EE+ +Q
Sbjct: 571 --------------ALMAEDEAIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81 Length = 104	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1363
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	99.94
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	99.93
2e5n_A		100	RNA polymerase II elongation factor ELL2; ELL_N2 d	98.93
3o1f_A		81	ATP-dependent CLP protease adapter protein CLPS; a	98.92
2w9r_A		108	YLJA, ATP-dependent CLP protease adapter protein C	98.91
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	98.88
3dnj_A		85	ATP-dependent CLP protease adapter protein CLPS; a	98.74

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A	Back alignment and structure

Probab=99.94  E-value=2.3e-28  Score=221.54  Aligned_cols=74  Identities=62%  Similarity=1.364  Sum_probs=68.6

Q ss_pred             CCccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEEecCCCccccCCCccccCCCCCCCcCC
Q psy353          114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHI  187 (1363)
Q Consensus       114 ~~~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~  187 (1363)
                      .++++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.|.+||+|||||+||||+++||++|.
T Consensus         2 ~~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~   75 (75)
T 3ny3_A            2 PLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE   75 (75)
T ss_dssp             ----CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred             CCCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence            35689999999999999999999999999999999999999999999999889999999999999999999994

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A	Back alignment and structure

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A	Back alignment and structure

>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81	Back alignment and structure

>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1363
d2doaa1		91	a.4.5.81 (A:8-98) RNA polymerase II elongation fac	8e-23
d1r6oc1		87	d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA) {E	6e-12

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (228), Expect = 8e-23
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 851 IKKEIIQQLCIKPLPHSELNKALPDDSNHETG---LERVINEIADFKKPTQSSGKGVYEL 907
            +  ++  L ++P   +EL   L  D   +     L+ ++ ++A+          G   L
Sbjct: 6   FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKD-----GTCTL 60

Query: 908 KPEFYDGYNVFFYHYSREEVSRSEEEQRKRRK 939
           +   Y      +  YS  +  +   ++   RK
Sbjct: 61  QDCMYKDVQKDWPGYSEGD--QQLLKRVLVRK 90

PyMOL of d2doaa1

>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA) {Escherichia coli [TaxId: 562]} Length = 87	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1363
d2doaa1		91	RNA polymerase II elongation factor ELL {Human (Ho	99.8
d1r6oc1		87	Adaptor protein ClpS (YljA) {Escherichia coli [Tax	99.09
d2bbya_		69	DNA-binding domain from rap30 {Human (Homo sapiens	80.05

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.7e-21  Score=178.46  Aligned_cols=83  Identities=16%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCCCChHHHhhhCCCCCCC---cchHHHHHHHhhcccCCCcCCCCceeeeccccccccCcccccCChHH
Q psy353          850 CIKKEIIQQLCIKPLPHSELNKALPDDSNH---ETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREE  926 (1363)
Q Consensus       850 ~irreIIh~Lc~~p~t~SeL~~~lpe~~~~---~~~fe~iL~eVA~Fk~P~g~~d~G~Y~LK~E~~~e~DPyf~hYsr~~  926 (1363)
                      -||++|||.||++|+|||||++.||++...   ...|+.||++||+|++|     .|+|+||+++|+||||||+|||++|
T Consensus         5 ~lR~~iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~-----~g~Y~LK~~~~~Evdp~~~~Ys~~d   79 (91)
T d2doaa1           5 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK-----DGTCTLQDCMYKDVQKDWPGYSEGD   79 (91)
T ss_dssp             CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS-----SCEEECCSSGGGGCCSCCTTCCSHH
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHhcccccchHHHHHHHHHHHheecCC-----CceEeeHHHHHhHcCccCCCCCHHH
Confidence            489999999999999999999999998875   34799999999999965     4789999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy353          927 VSRSEEEQRKR  937 (1363)
Q Consensus       927 ~~~Ae~~~kk~  937 (1363)
                      |+.|++.++++
T Consensus        80 rq~~~~~l~rk   90 (91)
T d2doaa1          80 QQLLKRVLVRK   90 (91)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

PyMOL of d2doaa1

>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure