Psyllid ID: psy3565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MKIKGMDRKTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKKSILDSDLSSVENDSQSESSLNTKNGDITTD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEcccHHHHEHcHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkikgmdrktptkrrrkqakdenywdcsvctyRNVAEAFkcsmcdvrkgtstrkpritpdlVAQVtqqypvpatskvgpkkegggkeksenrkfkkhgrrkwnppklkhvdrtTAQTLEITVNNLTVKVTEFKPKIKKsildsdlssvendsqsesslntkngdittd
Flexible Loop (DISEMBL)
mkikgmdrktptkrrrkqakdenywdcsvcTYRNVAEafkcsmcdvrkgtstrkpritpdlvaqvtqqypvpatskvgpkkegggkeksenrkfkkhgrrkwnppklkhvdrttaqtleitvnnltvkvtefkpkikksildsdlssvendsqsesslntkngdittd
Low Complexity Region (SEG)
MKIKGMDRKTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPATSKVgpkkegggkekSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKKSILDSDLssvendsqsessLNTKNGDITTD
Disordered region (IsUnstruct)
**********************NYWDCSVCTYRNVAEAFKCSMCDVRK****************************************************************TTAQTLEITVNNLTVKVTEFKP**********************************
Disordered Region (DISOPRED)
**************************CSVCTYRNVAEAFKCS******************************************************************HVDRTTAQTLEITVNNLTVKVTE*************************************
Disordered Region (DISEMBL)
*********************ENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPATS**************************WNPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKKSI****************************
Disordered Region (DISPRO)
**********************NYWDCSVCTYRNVAEAFKCSMCDVRK*T*TRKPRITPDL***************************************************TTAQTLEITVNNLTVKVTEFKP**********************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIKGMDRKTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKKSILDSDLSSVENDSQSESSLNTKNGDITTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q99LW6	179	YY1-associated factor 2 O	yes	N/A	0.75	0.703	0.592	5e-32
Q8IY57	180	YY1-associated factor 2 O	yes	N/A	0.928	0.866	0.537	6e-30
Q8N488	228	RING1 and YY1-binding pro	no	N/A	0.303	0.223	0.754	7e-18
Q8CCI5	228	RING1 and YY1-binding pro	no	N/A	0.303	0.223	0.754	7e-18
Q5EG55	257	RING1 and YY1-binding pro	no	N/A	0.303	0.198	0.716	2e-16
Q7SYB3	385	RING1 and YY1-binding pro	no	N/A	0.303	0.132	0.679	6e-16

>sp|Q99LW6|YAF2_MOUSE YY1-associated factor 2 OS=Mus musculus GN=Yaf2 PE=1 SV=1

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 4/130 (3%)

Query: 7   DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVA- 63
           D+K+PT  KR+ K A DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVA 
Sbjct: 3   DKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query: 64  QVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
           QVTQQ+ VP T     KK+   K+KSE     K    K   P+LK+VDR++AQ LE+TV 
Sbjct: 63  QVTQQF-VPPTQSKKEKKDRVEKDKSEKEAASKKNCHKKTRPRLKNVDRSSAQHLEVTVG 121

Query: 124 NLTVKVTEFK 133
           +LTV +T+FK
Sbjct: 122 DLTVIITDFK 131

Binds to MYC and inhibits MYC-mediated transactivation. Also binds to MYCN and enhances MYCN-dependent transcriptional activation. Increases calpain 2-mediated proteolysis of YY1 in vitro. Component of the E2F6.com-1 complex, a repressive complex that methylates 'Lys-9' of histone H3, suggesting that it is involved in chromatin-remodeling.
Mus musculus (taxid: 10090)

>sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2 OS=Homo sapiens GN=YAF2 PE=1 SV=3

 Score =  129 bits (325), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 105/160 (65%), Gaps = 4/160 (2%)

Query: 7   DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVA- 63
           D+K+PT  KR+ K + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVA 
Sbjct: 3   DKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query: 64  QVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
           QVTQQ+ VP T     KK+   KEKSE     K    K   P+LK+VDR++AQ LE+TV 
Sbjct: 63  QVTQQF-VPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVG 121

Query: 124 NLTVKVTEFKPKIKKSILDSDLSSVENDSQSESSLNTKNG 163
           +LTV +T+FK K K     S  S+ ++     SS NT+ G
Sbjct: 122 DLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERG 161

Binds to MYC and inhibits MYC-mediated transactivation. Also binds to MYCN and enhances MYCN-dependent transcriptional activation. Increases calpain 2-mediated proteolysis of YY1 in vitro. Component of the E2F6.com-1 complex, a repressive complex that methylates 'Lys-9' of histone H3, suggesting that it is involved in chromatin-remodeling.

Homo sapiens (taxid: 9606)

>sp|Q8N488|RYBP_HUMAN RING1 and YY1-binding protein OS=Homo sapiens GN=RYBP PE=1 SV=2

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 2/53 (3%)

Query: 7  DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRI 57
          D+K+PT  KR+ K A DE +WDCSVCT+RN AEAFKCS+CDVRKGTSTRKPRI
Sbjct: 5  DKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRI 57

Inhibits ubiquitination and subsequent degradation of TP53, and thereby plays a role in regulating transcription of TP53 target genes. May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1. May bind to DNA. Promotes apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q8CCI5|RYBP_MOUSE RING1 and YY1-binding protein OS=Mus musculus GN=Rybp PE=1 SV=1

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%), Gaps = 2/53 (3%)

Query: 7  DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRI 57
          D+K+PT  KR+ K A DE +WDCSVCT+RN AEAFKCS+CDVRKGTSTRKPRI
Sbjct: 5  DKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRI 57

Inhibits ubiquitination and subsequent degradation of TP53, and thereby plays a role in regulating transcription of TP53 target genes. May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1. May bind to DNA. Promotes apoptosis.

Mus musculus (taxid: 10090)

>sp|Q5EG55|RYBPB_DANRE RING1 and YY1-binding protein B OS=Danio rerio GN=rybpb PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 44/53 (83%), Gaps = 2/53 (3%)

Query: 7  DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRI 57
          D+K+PT  KR+ K   D  +WDCSVCT+RN AEAFKCS+CDVRKGTSTRKPRI
Sbjct: 3  DKKSPTRPKRQAKPTADNGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRI 55

May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1.

Danio rerio (taxid: 7955)

>sp|Q7SYB3|RYBPA_DANRE RING1 and YY1-binding protein A OS=Danio rerio GN=rybpa PE=2 SV=1

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%), Gaps = 2/53 (3%)

Query: 7  DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRI 57
          D+K+P+  KR+ K + D  +WDCSVCT++N AEAFKCS+CDVRKGTSTRKPRI
Sbjct: 3  DKKSPSRPKRQAKPSADNGFWDCSVCTFKNSAEAFKCSICDVRKGTSTRKPRI 55

May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
307171022	154	YY1-associated factor 2 [Camponotus flor	0.869	0.948	0.496	9e-34
12836629	179	unnamed protein product [Mus musculus]	0.75	0.703	0.592	2e-30
40254385	179	YY1-associated factor 2 [Mus musculus] g	0.75	0.703	0.592	3e-30
91085813	146	PREDICTED: similar to AGAP010288-PA [Tri	0.696	0.801	0.556	4e-30
194884485	150	GG22783 [Drosophila erecta] gi|195346819	0.738	0.826	0.555	8e-30
194755890	150	GF11639 [Drosophila ananassae] gi|190621	0.738	0.826	0.555	1e-29
195121254	150	GI20311 [Drosophila mojavensis] gi|19538	0.738	0.826	0.555	1e-29
195029829	151	GH19772 [Drosophila grimshawi] gi|193903	0.720	0.801	0.496	1e-29
19922764	150	ring and YY1 binding protein [Drosophila	0.738	0.826	0.555	1e-29
125807700	150	GA11466 [Drosophila pseudoobscura pseudo	0.738	0.826	0.548	2e-29

>gi|307171022|gb|EFN63082.1| YY1-associated factor 2 [Camponotus floridanus]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 100/155 (64%), Gaps = 9/155 (5%)

Query: 14  RRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPA 73
           +R+ +  +ENYWDCSVCT+RN AEAFKC MCDVRKGTSTRKPRI P LVAQ   +     
Sbjct: 8   KRQAKVLEENYWDCSVCTFRNTAEAFKCLMCDVRKGTSTRKPRINPQLVAQQVSKKEGSG 67

Query: 74  TSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVNNLTVKVTEFK 133
                              K  K  R+  +PP+LK++DR+TAQT E+TVNN+TV +TE+K
Sbjct: 68  GGG---------GGGGGGGKMDKPRRKNRHPPRLKNIDRSTAQTNEVTVNNVTVTITEYK 118

Query: 134 PKIKKSILDSDLSSVENDSQSESSLNTKNGDITTD 168
           PK+KK    S  +S E  SQ +SS +++N D+ TD
Sbjct: 119 PKVKKGSDQSSNASSEGGSQHDSSQDSRNLDVGTD 153

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12836629|dbj|BAB23741.1| unnamed protein product [Mus musculus]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 4/130 (3%)

Query: 7   DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVA- 63
           D+K+PT  KR+ K A DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVA 
Sbjct: 3   DKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query: 64  QVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
           QVTQQ+ VP T     KK+   K+KSE     K    K   P+LK+VDR++AQ LE+TV 
Sbjct: 63  QVTQQF-VPPTQSKKEKKDRVEKDKSEKEAASKKNCSKKTRPRLKYVDRSSAQHLEVTVG 121

Query: 124 NLTVKVTEFK 133
           +LTV +T+FK
Sbjct: 122 DLTVIITDFK 131

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|40254385|ref|NP_077151.3| YY1-associated factor 2 [Mus musculus] gi|38258834|sp|Q99LW6.1|YAF2_MOUSE RecName: Full=YY1-associated factor 2 gi|12805439|gb|AAH02192.1| YY1 associated factor 2 [Mus musculus] gi|37196738|dbj|BAC97817.1| YY1 associated factor-2-a [Mus musculus] gi|74215942|dbj|BAE28627.1| unnamed protein product [Mus musculus]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 4/130 (3%)

Query: 7   DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVA- 63
           D+K+PT  KR+ K A DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVA 
Sbjct: 3   DKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query: 64  QVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
           QVTQQ+ VP T     KK+   K+KSE     K    K   P+LK+VDR++AQ LE+TV 
Sbjct: 63  QVTQQF-VPPTQSKKEKKDRVEKDKSEKEAASKKNCHKKTRPRLKNVDRSSAQHLEVTVG 121

Query: 124 NLTVKVTEFK 133
           +LTV +T+FK
Sbjct: 122 DLTVIITDFK 131

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91085813|ref|XP_974738.1| PREDICTED: similar to AGAP010288-PA [Tribolium castaneum] gi|270010133|gb|EFA06581.1| hypothetical protein TcasGA2_TC009493 [Tribolium castaneum]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 95/133 (71%), Gaps = 16/133 (12%)

Query: 6   MD-RKTPTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD +K+P +R ++QAK  +EN+WDCSVCT+RN AEAFKC MCDVRKGTSTRKPRI P LV
Sbjct: 1   MDHKKSPIRRAKRQAKVLEENFWDCSVCTFRNTAEAFKCLMCDVRKGTSTRKPRINPQLV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITV 122
           AQ      +PATS           ++ +  K     RR  +PP+LK+VDR+TAQT E+TV
Sbjct: 61  AQQVASQFLPATS-----------QQKKKDKKAMKKRR--HPPRLKNVDRSTAQTREVTV 107

Query: 123 NNLTVKVTEFKPK 135
           N++TV +TE+KPK
Sbjct: 108 NSVTVIITEYKPK 120

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194884485|ref|XP_001976274.1| GG22783 [Drosophila erecta] gi|195346819|ref|XP_002039952.1| GM15940 [Drosophila sechellia] gi|195487972|ref|XP_002092118.1| GE14012 [Drosophila yakuba] gi|195585783|ref|XP_002082658.1| GD11693 [Drosophila simulans] gi|190659461|gb|EDV56674.1| GG22783 [Drosophila erecta] gi|194135301|gb|EDW56817.1| GM15940 [Drosophila sechellia] gi|194178219|gb|EDW91830.1| GE14012 [Drosophila yakuba] gi|194194667|gb|EDX08243.1| GD11693 [Drosophila simulans]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 11/135 (8%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRR--KWNPPKLKHVDRTTAQTLEI 120
           AQ  Q   +P  S   P     GK  S +R    H R+  K  P +LK+VDR+TAQT E+
Sbjct: 61  AQ--QAATLPGASANMP----NGKSASGSRHGSGHDRQRHKRYPARLKNVDRSTAQTREV 114

Query: 121 TVNNLTVKVTEFKPK 135
           TVN++TV +TE+K K
Sbjct: 115 TVNSVTVFITEYKAK 129

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755890|ref|XP_001960212.1| GF11639 [Drosophila ananassae] gi|190621510|gb|EDV37034.1| GF11639 [Drosophila ananassae]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 11/135 (8%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRR--KWNPPKLKHVDRTTAQTLEI 120
           AQ  Q   +P  S   P     GK  S +R    H R+  K  P +LK+VDR+TAQT E+
Sbjct: 61  AQ--QAATLPGASGNMP----NGKSASGSRHGSGHDRQRHKRYPARLKNVDRSTAQTREV 114

Query: 121 TVNNLTVKVTEFKPK 135
           TVN++TV +TE+K K
Sbjct: 115 TVNSVTVFITEYKAK 129

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121254|ref|XP_002005135.1| GI20311 [Drosophila mojavensis] gi|195383048|ref|XP_002050238.1| GJ22038 [Drosophila virilis] gi|193910203|gb|EDW09070.1| GI20311 [Drosophila mojavensis] gi|194145035|gb|EDW61431.1| GJ22038 [Drosophila virilis]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 11/135 (8%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRR--KWNPPKLKHVDRTTAQTLEI 120
           AQ  Q   +P  S   P     GK  S +R    H R+  K  P +LK+VDR+TAQT E+
Sbjct: 61  AQ--QAATLPGASGNMP----NGKPASSSRHGSGHDRQRHKRYPARLKNVDRSTAQTREV 114

Query: 121 TVNNLTVKVTEFKPK 135
           TVN++TV +TE+K K
Sbjct: 115 TVNSVTVFITEYKAK 129

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029829|ref|XP_001987774.1| GH19772 [Drosophila grimshawi] gi|193903774|gb|EDW02641.1| GH19772 [Drosophila grimshawi]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 18/139 (12%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYP------VPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQ 116
           AQ     P      +P        + GGG ++  ++++         P +LK+VDR+TAQ
Sbjct: 61  AQQAATLPGASGGNMPNGKPASSSRHGGGHDRQRHKRY---------PARLKNVDRSTAQ 111

Query: 117 TLEITVNNLTVKVTEFKPK 135
           T E+TVN++TV +TE+K K
Sbjct: 112 TREVTVNSVTVFITEYKAK 130

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19922764|ref|NP_611705.1| ring and YY1 binding protein [Drosophila melanogaster] gi|17862256|gb|AAL39605.1| LD18758p [Drosophila melanogaster] gi|21645629|gb|AAF46885.2| ring and YY1 binding protein [Drosophila melanogaster] gi|220942408|gb|ACL83747.1| CG12190-PA [synthetic construct]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 11/135 (8%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRR--KWNPPKLKHVDRTTAQTLEI 120
           AQ  Q   +P  S   P     GK  S +R    H R+  K  P +LK+VDR+TAQT E+
Sbjct: 61  AQ--QAATLPGASVNMP----NGKSASGSRHGSGHDRQRHKRYPARLKNVDRSTAQTREV 114

Query: 121 TVNNLTVKVTEFKPK 135
           TVN++TV +TE+K K
Sbjct: 115 TVNSVTVFITEYKAK 129

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125807700|ref|XP_001360490.1| GA11466 [Drosophila pseudoobscura pseudoobscura] gi|195150155|ref|XP_002016020.1| GL11369 [Drosophila persimilis] gi|54635662|gb|EAL25065.1| GA11466 [Drosophila pseudoobscura pseudoobscura] gi|194109867|gb|EDW31910.1| GL11369 [Drosophila persimilis]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 95/135 (70%), Gaps = 11/135 (8%)

Query: 6   MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
           MD+K+ P +R+++QAK  ++N+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct: 1   MDKKSSPVRRQKRQAKVIEDNFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query: 63  AQVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRR--KWNPPKLKHVDRTTAQTLEI 120
           AQ  Q   +P  S   P     GK  S +R    H R+  K  P +LK+VDR+TAQT E+
Sbjct: 61  AQ--QAATLPGASGNMP----NGKSASSSRHGSGHDRQRHKRYPARLKNVDRSTAQTREV 114

Query: 121 TVNNLTVKVTEFKPK 135
           TVN++TV +TE+K K
Sbjct: 115 TVNSVTVFITEYKAK 129

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
UNIPROTKB|Q8IY57	180	YAF2 "YY1-associated factor 2"	0.928	0.866	0.481	2.9e-32
MGI|MGI:1914307	179	Yaf2 "YY1 associated factor 2"	0.785	0.737	0.544	7.7e-32
UNIPROTKB|Q5ZKC5	180	YAF2 "Uncharacterized protein"	0.928	0.866	0.475	1.3e-31
ZFIN|ZDB-GENE-061103-96	257	rybpb "RING1 and YY1 binding p	0.416	0.272	0.657	7.7e-31
ZFIN|ZDB-GENE-030424-3	385	rybpa "RING1 and YY1 binding p	0.416	0.181	0.630	7.2e-30
UNIPROTKB|F1PBB1	196	YAF2 "Uncharacterized protein"	0.244	0.209	0.780	8.6e-30
FB|FBgn0034763	150	RYBP "Ring and YY1 Binding Pro	0.75	0.84	0.511	2.1e-29
ZFIN|ZDB-GENE-041210-115	184	yaf2 "YY1 associated factor 2"	0.767	0.701	0.5	1.2e-28
UNIPROTKB|J3KNM5	156	YAF2 "YY1-associated factor 2"	0.297	0.320	0.711	2.2e-27
UNIPROTKB|G3MWW9	178	YAF2 "Uncharacterized protein"	0.916	0.865	0.431	2.9e-25

UNIPROTKB|Q8IY57 YAF2 "YY1-associated factor 2" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 77/160 (48%), Positives = 95/160 (59%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+PT  KR+ K + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVAQ
Sbjct:     3 DKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query:    65 -VTQQYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
              VTQQ+  P  SK             +    KK+  +K  P +LK+VDR++AQ LE+TV 
Sbjct:    63 QVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRP-RLKNVDRSSAQHLEVTVG 121

Query:   124 NLTVKVTEFKPKIKKSILDSDLXXXXXXXXXXXXLNTKNG 163
             +LTV +T+FK K K     S               NT+ G
Sbjct:   122 DLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERG 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1914307 Yaf2 "YY1 associated factor 2" [Mus musculus (taxid:10090)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 74/136 (54%), Positives = 91/136 (66%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+PT  KR+ K A DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVAQ
Sbjct:     3 DKKSPTRPKRQPKPASDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query:    65 -VTQQYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
              VTQQ+  P  SK             +    KK+  +K  P +LK+VDR++AQ LE+TV 
Sbjct:    63 QVTQQFVPPTQSKKEKKDRVEKDKSEKEAASKKNCHKKTRP-RLKNVDRSSAQHLEVTVG 121

Query:   124 NLTVKVTEFKPKIKKS 139
             +LTV +T+FK K K +
Sbjct:   122 DLTVIITDFKEKAKSA 137

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5ZKC5 YAF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 76/160 (47%), Positives = 94/160 (58%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+PT  KR+ K + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR    LVAQ
Sbjct:     3 DKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQ 62

Query:    65 -VTQQYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
              V QQ+  P  SK             +    KK+  +K  P +LK+VDR++AQ LE+TV 
Sbjct:    63 QVPQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRP-RLKNVDRSSAQHLEVTVG 121

Query:   124 NLTVKVTEFKPKIKKSILDSDLXXXXXXXXXXXXLNTKNG 163
             +LTV +T+FK K K     S               NT+ G
Sbjct:   122 DLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERG 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

ZFIN|ZDB-GENE-061103-96 rybpb "RING1 and YY1 binding protein b" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 48/73 (65%), Positives = 54/73 (73%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+PT  KR+ K   D  +WDCSVCT+RN AEAFKCS+CDVRKGTSTRKPRI   LVAQ
Sbjct:     3 DKKSPTRPKRQAKPTADNGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLVAQ 62

Query:    65 -VTQQYPVPATSK 76
              V QQY  P   K
Sbjct:    63 QVAQQYATPPPPK 75

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

ZFIN|ZDB-GENE-030424-3 rybpa "RING1 and YY1 binding protein a" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
 Identities = 46/73 (63%), Positives = 56/73 (76%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+P+  KR+ K + D  +WDCSVCT++N AEAFKCS+CDVRKGTSTRKPRI   LVAQ
Sbjct:     3 DKKSPSRPKRQAKPSADNGFWDCSVCTFKNSAEAFKCSICDVRKGTSTRKPRINSQLVAQ 62

Query:    65 -VTQQYPVPATSK 76
              V QQY  P  +K
Sbjct:    63 QVAQQYAAPPPAK 75

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PBB1 YAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query:    13 KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTR 53
             KR+ K + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTR
Sbjct:     3 KRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTR 43

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0034763 RYBP "Ring and YY1 Binding Protein" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 68/133 (51%), Positives = 91/133 (68%)

Query:     6 MDRKT-PTKRRRKQAK--DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
             MD+K+ P +R+++QAK  +EN+WDCSVCTYRN AEAFKC MCDVRKGTSTRKPR+   LV
Sbjct:     1 MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTSTRKPRLNSALV 60

Query:    63 AQVTQQYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITV 122
             AQ     P  + +             S + + ++H R    P +LK+VDR+TAQT E+TV
Sbjct:    61 AQQAATLPGASVNMPNGKSASGSRHGSGHDR-QRHKRY---PARLKNVDRSTAQTREVTV 116

Query:   123 NNLTVKVTEFKPK 135
             N++TV +TE+K K
Sbjct:   117 NSVTVFITEYKAK 129

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016604 "nuclear body" evidence=IDA

ZFIN|ZDB-GENE-041210-115 yaf2 "YY1 associated factor 2" [Danio rerio (taxid:7955)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 66/132 (50%), Positives = 84/132 (63%)

Query:     9 KTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ-VTQ 67
             K P KR+ K + D+ YWDCSVCT++N AEAFKC MCDVRKGTSTRKPR    LV+Q VTQ
Sbjct:    10 KVP-KRQAKPSSDDGYWDCSVCTFKNTAEAFKCMMCDVRKGTSTRKPRPVSQLVSQQVTQ 68

Query:    68 QYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVNNLTV 127
             Q+      K                  KK+  +K  P +LK+VDR++AQ LE+TV +LTV
Sbjct:    69 QFASATLPKKEKKEKTEKDKNEREPTLKKNNHKKMRP-RLKNVDRSSAQHLEVTVGDLTV 127

Query:   128 KVTEFKPKIKKS 139
              +T++K K K S
Sbjct:   128 IITDYKEKTKPS 139

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0030900 "forebrain development" evidence=IMP

UNIPROTKB|J3KNM5 YAF2 "YY1-associated factor 2" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPR 56
             D+K+PT  KR+ K + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRK +
Sbjct:     3 DKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKEK 54

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3MWW9 YAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 69/160 (43%), Positives = 87/160 (54%)

Query:     7 DRKTPT--KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQ 64
             D+K+PT  KR+ K + DE YWDCSVCT+R       C MC V KGTSTRKPR    LVAQ
Sbjct:     3 DKKSPTRPKRQPKPSSDEGYWDCSVCTFRPSPRP-SCMMCCV-KGTSTRKPRPVSQLVAQ 60

Query:    65 -VTQQYPVPATSKVXXXXXXXXXXXSENRKFKKHGRRKWNPPKLKHVDRTTAQTLEITVN 123
              VTQQ+  P  SK             +    KK+  +K  P +LK+VDR++AQ LE+TV 
Sbjct:    61 QVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRP-RLKNVDRSSAQHLEVTVG 119

Query:   124 NLTVKVTEFKPKIKKSILDSDLXXXXXXXXXXXXLNTKNG 163
             +LTV +T+FK K K     S               NT+ G
Sbjct:   120 DLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERG 159

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99LW6	YAF2_MOUSE	No assigned EC number	0.5923	0.75	0.7039	yes	N/A
Q8IY57	YAF2_HUMAN	No assigned EC number	0.5375	0.9285	0.8666	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
smart00547	25	smart00547, ZnF_RBZ, Zinc finger domain	1e-05
pfam00641	29	pfam00641, zf-RanBP, Zn-finger in Ran binding prot	5e-04

>gnl|CDD|197784 smart00547, ZnF_RBZ, Zinc finger domain

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 25 WDCSVCTYRNVAEAFKCSMCD 45
          W+C  CT+ N A   KC  C 
Sbjct: 3  WECPACTFLNFASRSKCFACG 23

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP. Length = 25

>gnl|CDD|201366 pfam00641, zf-RanBP, Zn-finger in Ran binding protein and others

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 22 ENYWDCSVCTYRNVAEAFKCSMCD 45
          E  WDCS C  +N A + KC  C 
Sbjct: 1  EGDWDCSKCLVQNFATSTKCVACQ 24

Length = 29

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG4477|consensus	228		100.0
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.91
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	98.24
KOG4198|consensus	280		93.04
KOG4345|consensus	774		89.28
KOG4345|consensus	774		87.41

>KOG4477|consensus

Probab=100.00  E-value=3e-51  Score=341.65  Aligned_cols=161  Identities=46%  Similarity=0.629  Sum_probs=142.5

Q ss_pred             CCCCCCCchhhhhccC---CCCceeccccceeccccccceecCCCCCCCCCCCCCCCccchhhhhccCCcCCCCCCCCCC
Q psy3565           5 GMDRKTPTKRRRKQAK---DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQVTQQYPVPATSKVGPKK   81 (168)
Q Consensus         5 ~m~~~~~~~r~kr~~k---~eg~WdCsvCt~rN~asA~KCv~C~tpk~~strk~r~~s~lvaQq~~qq~~~~~~~~~~~~   81 (168)
                      -||++++++|+||+++   ++|+|||++|||+|.|+||+|.+|++++|+++|+|++++||||||++|||++|++++++++
T Consensus         2 ~mgdkksptrpkr~akp~~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTSTRkpr~nsqlVaqQvtqq~~~p~q~kKEKk   81 (228)
T KOG4477|consen    2 RMGDKKSPTRPKRDAKPNDDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTSTRKPRCNSQLVAQQVTQQTMVPKQVKKEKK   81 (228)
T ss_pred             CCccccCCCCccccCCCccccCceeeeeeeecchhhhhheeeecccccccccCCcchHHHHHHHHhhhhcCCCcchhHHH
Confidence            5999999999999999   8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCc---cccch--h---hhhccCCcCCC---------------------------------CCCcCCCcCCCCceEEE
Q psy3565          82 EGGGK---EKSEN--R---KFKKHGRRKWN---------------------------------PPKLKHVDRTTAQTLEI  120 (168)
Q Consensus        82 ~~~~k---~k~~~--~---~~~k~~~~~~~---------------------------------rpRLKnVDRSSAq~~eV  120 (168)
                      .+.++   +|++.  +   ...|+|++++.                                 |||||||||||||+|+|
T Consensus        82 ~Kvekr~~eKset~ke~e~~stKkn~~kkt~~~Se~~r~P~~E~qe~~Sve~T~tkSks~~akrPrlKnvdrstaq~l~v  161 (228)
T KOG4477|consen   82 LKVEKRSLEKSETRKESEGVSTKKNKIKKTDIASEKPRTPVPEKQEEVSVEETPTKSKSATAKRPRLKNVDRSTAQDLKV  161 (228)
T ss_pred             HHHHHhhhhcchhhhhcccccccccccccCcccccccCCCCchhhchhccccccccccccccCCccccccccchhhhhhe
Confidence            77765   33321  1   23455555543                                 99999999999999999


Q ss_pred             EeCCeeEEEeeccCCcCCCCcccc-----ccchhcccccccc-ccccCCCCC
Q psy3565         121 TVNNLTVKVTEFKPKIKKSILDSD-----LSSVENDSQSESS-LNTKNGDIT  166 (168)
Q Consensus       121 TVg~vTViITefK~K~~~~~~~s~-----~~~~~~~~qs~ss-~~t~~g~~~  166 (168)
                      |||++|||||||++|+.+.++++.     +. +||++|++|+ ++|++|++-
T Consensus       162 tVg~~tviiTdfkekt~S~~~ss~~~~sn~~-~dq~~qssS~S~tT~qG~sr  212 (228)
T KOG4477|consen  162 TVGTKTVIITDFKEKTESNVNSSLVKESNKK-EDQIGQSSSDSLTTNQGESR  212 (228)
T ss_pred             eecceEEEEeeccccccCCcchhhhhhhccc-ccccCCccCCcccccccccc
Confidence            999999999999999999988774     34 6999999887 999999864

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.91  E-value=4.9e-10  Score=67.22  Aligned_cols=30  Identities=33%  Similarity=0.774  Sum_probs=24.5

Q ss_pred             CCCceeccccceeccccccceecCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      ++|.|.|+.|+|.|.+++.+|++|++++|.
T Consensus         1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence            478999999999999999999999999873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>smart00547 ZnF_RBZ Zinc finger domain

Probab=98.24  E-value=3.6e-07  Score=52.74  Aligned_cols=25  Identities=36%  Similarity=0.913  Sum_probs=24.0

Q ss_pred             CceeccccceeccccccceecCCCC
Q psy3565          23 NYWDCSVCTYRNVAEAFKCSMCDVR   47 (168)
Q Consensus        23 g~WdCsvCt~rN~asA~KCv~C~tp   47 (168)
                      |.|.|+.|+|.|.+.+..|.+|++|
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCc
Confidence            6899999999999999999999987

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>KOG4198|consensus

Probab=93.04  E-value=0.059  Score=47.74  Aligned_cols=32  Identities=22%  Similarity=0.713  Sum_probs=29.9

Q ss_pred             CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST   52 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st   52 (168)
                      ..|.|.|+-|.|.|.+.-.-|.-|+++++...
T Consensus       137 ~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a  168 (280)
T KOG4198|consen  137 RSGDWECPGCNFHNFARNSECFRCGAKRPLAA  168 (280)
T ss_pred             cccCcccCCCCceeccccchhhhcCCcCcccc
Confidence            78999999999999999999999999998844

>KOG4345|consensus

Probab=89.28  E-value=0.1  Score=51.56  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=35.7

Q ss_pred             CCceeccccceeccccccceecCCCCCCCCC-CCC----CCCccchhhhhccCC
Q psy3565          22 ENYWDCSVCTYRNVAEAFKCSMCDVRKGTST-RKP----RITPDLVAQVTQQYP   70 (168)
Q Consensus        22 eg~WdCsvCt~rN~asA~KCv~C~tpk~~st-rk~----r~~s~lvaQq~~qq~   70 (168)
                      +..|+|.+|+|.||+.+.+|.+|+++.+... ..+    .....+|.|...++.
T Consensus       183 ~~eW~~lik~ass~pr~~r~~~~~~~~~~e~s~~~yesLEe~hifvl~~ilRrp  236 (774)
T KOG4345|consen  183 NDEWTELIKLASSEPRMHRSGNGGTGGGVEISEDPYESLEEFHIFVLAHILRRP  236 (774)
T ss_pred             HHHHHHHHHhhcccchhhhcccCCCCCCcccccccchhHHHHHHHHHHHHhhCC
Confidence            4469999999999999999999999988633 222    233455666655544

>KOG4345|consensus

Probab=87.41  E-value=0.13  Score=50.96  Aligned_cols=28  Identities=25%  Similarity=0.582  Sum_probs=25.6

Q ss_pred             CceeccccceeccccccceecCCCCCCC
Q psy3565          23 NYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        23 g~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      -.|.|.+|+|+|++.+++|.||....|.
T Consensus         6 ~~W~~~~~~~~~lp~al~lS~~~~s~~~   33 (774)
T KOG4345|consen    6 EKWACELCDYMTLPMALVLSDFRRSTGA   33 (774)
T ss_pred             HHHHHHhhccccCchhhHHHHHHhccCC
Confidence            3699999999999999999999988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2d9g_A	53	Solution Structure Of The Zf-Ranbp Domain Of Yy1-As		2e-14
3ixs_B	37	Ring1b C-Terminal DomainRYBP C-Terminal Domain Comp		7e-05

>pdb|2D9G|A Chain A, Solution Structure Of The Zf-Ranbp Domain Of Yy1-Associated Factor 2 Length = 53

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/36 (88%), Positives = 33/36 (91%)
Query: 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPR 56
          DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR
Sbjct: 8  DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPR 43

>pdb|3IXS|B Chain B, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex Length = 37

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 105 PKLKHVDRTTAQTLEITVNNLTVKVTEFKPK 135
           P+LK+VDR+TAQ L +TV N+TV +T+FK K
Sbjct: 4   PRLKNVDRSTAQQLAVTVGNVTVIITDFKEK 34

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	5e-20
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	7e-06
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	2e-05
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	1e-05
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	2e-04
3ixs_B	37	RING1 and YY1-binding protein; RING1B, RYBP, polyc	1e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	7e-04
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	8e-04

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 53

 Score = 77.5 bits (190), Expect = 5e-20
 Identities = 32/46 (69%), Positives = 34/46 (73%)

Query: 17 KQAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLV 62
            + DE YWDCSVCT+RN AEAFKC MCDVRKGTSTRKPR      
Sbjct: 4  GSSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQSG 49

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 41.8 bits (97), Expect = 7e-06
 Identities = 9/41 (21%), Positives = 12/41 (29%)

Query: 19 AKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITP 59
              + W C  C  +N     KC  C   K       + T 
Sbjct: 4  GSAGSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTG 44

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 8  RKTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRK 48
            + T    K       WDC  C  +N  EA KC  C+  K
Sbjct: 56 STSGTGFGDKFKPAIGTWDCDTCLVQNKPEAVKCVACETPK 96

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 5  GMDRKTPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRK 48
                      K  K E  WDC VC  +N A++ KC  C+  K
Sbjct: 46 VSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIACESAK 89

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 25 WDCSVCTYRNVAEAFKCSMCDVRKGTSTRKP 55
          W+C VC   N AE  +C  C   K       
Sbjct: 9  WECPVCCVSNKAEDSRCVSCTSEKPGLVSAS 39

>3ixs_B RING1 and YY1-binding protein; RING1B, RYBP, polycomb, E3-ligase, chromosomal protein, TRAN regulation, chromatin regulator; HET: NHE; 1.70A {Homo sapiens} Length = 37

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 105 PKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIK 137
           P+LK+VDR+TAQ L +TV N+TV +T+FK K +
Sbjct: 4   PRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTR 36

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 12/113 (10%), Positives = 27/113 (23%), Gaps = 6/113 (5%)

Query: 10  TPTKRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCD------VRKGTSTRKPRITPDLVA 63
            P    + Q    +   C  CT+ N  +   C +C        +  +   +       V 
Sbjct: 166 DPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVH 225

Query: 64  QVTQQYPVPATSKVGPKKEGGGKEKSENRKFKKHGRRKWNPPKLKHVDRTTAQ 116
              ++  +                 S     +   R+       +  +R    
Sbjct: 226 IELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALEN 278

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 47

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 19 AKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKP 55
          +  E  WDC +C  +N A++ KC  C+  K  +    
Sbjct: 6  SGPEGSWDCELCLVQNKADSTKCLACESAKPGTKSGF 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3ixs_B	37	RING1 and YY1-binding protein; RING1B, RYBP, polyc	99.88
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	99.53
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	99.42
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	99.4
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	99.38
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	99.18
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	99.07
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	98.94
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	98.69
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	98.52
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	98.52
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	98.44
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	98.43
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	97.68
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	97.27
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	97.23
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	96.69
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	95.85
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	92.46
2j9u_B	76	VPS36, vacuolar protein sorting-associated protein	88.33
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	84.77
3gs2_B	30	Chromobox protein homolog 7; RING1B, CBOX, CBX7, p	80.69

>3ixs_B RING1 and YY1-binding protein; RING1B, RYBP, polycomb, E3-ligase, chromosomal protein, TRAN regulation, chromatin regulator; HET: NHE; 1.70A {Homo sapiens}

Probab=99.88  E-value=5.1e-24  Score=135.60  Aligned_cols=36  Identities=53%  Similarity=0.800  Sum_probs=30.9

Q ss_pred             CCCCcCCCcCCCCceEEEEeCCeeEEEeeccCCcCC
Q psy3565         103 NPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKK  138 (168)
Q Consensus       103 ~rpRLKnVDRSSAq~~eVTVg~vTViITefK~K~~~  138 (168)
                      +|||||||||||||++|||||||||||||||||.++
T Consensus         2 ~rprLkNvDRssaq~~~VTV~~vTViITe~k~k~~s   37 (37)
T 3ixs_B            2 TRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRS   37 (37)
T ss_dssp             --CCCSSEEEEEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             CCccccccccccceEEEEEECcEEEEEEecccccCC
Confidence            589999999999999999999999999999999764

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=4.6e-15  Score=99.84  Aligned_cols=47  Identities=68%  Similarity=1.179  Sum_probs=44.0

Q ss_pred             cCCCCceeccccceeccccccceecCCCCCCCCCCCCCCCccchhhh
Q psy3565          19 AKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQV   65 (168)
Q Consensus        19 ~k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~strk~r~~s~lvaQq   65 (168)
                      ..+++.|+|++|||+|++.+.+|.||++|++.++++++++.+||||.
T Consensus         6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~~~p~~n~~~~~~~   52 (53)
T 2d9g_A            6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQSGPSS   52 (53)
T ss_dssp             SSCCCCEECSSSCCEECSSCSSCSSSCCCCCCCCCCSCCCCCCCCSC
T ss_pred             CCCCCCcCCCCCccCCCCCCCccCCCCCcCCccccCccccccccccC
Confidence            34788999999999999999999999999999999999999999974

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=99.42  E-value=4e-14  Score=87.86  Aligned_cols=30  Identities=37%  Similarity=0.840  Sum_probs=26.6

Q ss_pred             CCCceeccccceeccccccceecCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      ++|+|+|++|+|+|++++++|+||++|||.
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG   33 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence            689999999999999999999999999974

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=99.40  E-value=5.9e-14  Score=87.77  Aligned_cols=31  Identities=35%  Similarity=0.782  Sum_probs=25.9

Q ss_pred             CCCCceeccccceeccccccceecCCCCCCC
Q psy3565          20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      .++|+|+|++|+|+|.+++++|+||++|||.
T Consensus         3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence            4789999999999999999999999999986

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.8e-13  Score=90.96  Aligned_cols=41  Identities=32%  Similarity=0.625  Sum_probs=36.8

Q ss_pred             ccCCCCceeccccceeccccccceecCCCCCCCCCCCCCCC
Q psy3565          18 QAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRIT   58 (168)
Q Consensus        18 ~~k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~strk~r~~   58 (168)
                      ...++|.|+|++|+|+|.+++++|++|++||+.+..++.+.
T Consensus         5 ~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~~~~~l~   45 (47)
T 2ebq_A            5 SSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVKRALT   45 (47)
T ss_dssp             CCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSSCGGGSC
T ss_pred             cCCCCCceECCeeeccCccCCceecCcCCCCCCCccCcccc
Confidence            34589999999999999999999999999999998777654

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=8.2e-12  Score=82.74  Aligned_cols=33  Identities=33%  Similarity=0.768  Sum_probs=30.9

Q ss_pred             CCCCceeccccceeccccccceecCCCCCCCCC
Q psy3565          20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGTST   52 (168)
Q Consensus        20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st   52 (168)
                      +++|.|+|++|+|+|.+++.+|++|++|++.+.
T Consensus         7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            7 GPEGSWDCELCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             CCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence            488999999999999999999999999999864

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=4e-11  Score=82.37  Aligned_cols=31  Identities=39%  Similarity=0.714  Sum_probs=29.2

Q ss_pred             CCCCceeccccceeccccccceecCCCCCCC
Q psy3565          20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      +++|.|+|++|+|+|.+++.+|++|++|||.
T Consensus        27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred             CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence            3799999999999999999999999999974

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=98.94  E-value=2.2e-10  Score=84.93  Aligned_cols=31  Identities=35%  Similarity=0.771  Sum_probs=26.6

Q ss_pred             CCCCceeccccceeccccccceecCCCCCCC
Q psy3565          20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      +++|+|+|++|+|+|++++.+|++|++|||.
T Consensus        68 ~~~g~W~C~~C~~~N~~~~~~C~aC~tpkPg   98 (98)
T 3gj7_B           68 PAIGTWDCDTCLVQNKPEAVKCVACETPKPG   98 (98)
T ss_dssp             ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCCcccCCcCcCCChhhcceecccCCCCCC
Confidence            4789999999999999999999999999974

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=98.69  E-value=4.7e-09  Score=76.08  Aligned_cols=31  Identities=42%  Similarity=0.866  Sum_probs=26.7

Q ss_pred             CCCCceeccccceeccccccceecCCCCCCC
Q psy3565          20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      +++|.|+|++|+|+|+++..+|++|+++||.
T Consensus        61 ~~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~   91 (92)
T 3gj8_B           61 KPEGSWDCEVCLVQNKADSTKCIACESAKPG   91 (92)
T ss_dssp             ---CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred             CCCCcccCCcCCcCChhhcccccccCCCCCC
Confidence            3789999999999999999999999999986

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=98.52  E-value=4e-08  Score=59.69  Aligned_cols=29  Identities=24%  Similarity=0.828  Sum_probs=26.8

Q ss_pred             CCCceeccccceeccccccceecCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKG   49 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~   49 (168)
                      +++.|.|.+|||.|.+....|.||+++++
T Consensus         5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            5 MGAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            56789999999999999999999999875

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=98.52  E-value=1.1e-08  Score=75.69  Aligned_cols=32  Identities=25%  Similarity=0.588  Sum_probs=0.0

Q ss_pred             CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST   52 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st   52 (168)
                      ...+|+|++|+|+|++++.+|++|++|++...
T Consensus         6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~   37 (98)
T 3gj7_B            6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPLK   37 (98)
T ss_dssp             --------------------------------
T ss_pred             CCCcccCCccccCChhhcccccccCCCCCCCc
Confidence            46789999999999999999999999998643

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=98.44  E-value=2.4e-08  Score=72.39  Aligned_cols=31  Identities=32%  Similarity=0.700  Sum_probs=0.0

Q ss_pred             CCCceeccccceeccccccceecCCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTS   51 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~s   51 (168)
                      .+|+|+|.+|+|+|++++.+|++|++||+..
T Consensus         5 ~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~   35 (92)
T 3gj8_B            5 SVGSWECPVCCVSNKAEDSRCVSCTSEKPGL   35 (92)
T ss_dssp             -------------------------------
T ss_pred             CCcCCCCCcCCCEeccccceecccCCCCCCC
Confidence            4799999999999999999999999999864

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=98.43  E-value=9.7e-08  Score=56.95  Aligned_cols=28  Identities=29%  Similarity=0.834  Sum_probs=25.8

Q ss_pred             CCCceeccccceeccccccceecCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRK   48 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk   48 (168)
                      +++.|.|+.|||.|.+....|.||++++
T Consensus         3 ~~~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            3 TSAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CSCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             CCccccCCcccccCCCCCCccCCcCCCC
Confidence            4568999999999999999999999986

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=97.68  E-value=3.1e-05  Score=51.91  Aligned_cols=32  Identities=25%  Similarity=0.548  Sum_probs=28.5

Q ss_pred             CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST   52 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st   52 (168)
                      .+..|.|..|||.|.+....|.||.++++...
T Consensus         7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~   38 (52)
T 2crc_A            7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEAY   38 (52)
T ss_dssp             CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred             CCCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence            45589999999999999999999999988643

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=97.27  E-value=0.00011  Score=44.35  Aligned_cols=30  Identities=27%  Similarity=0.583  Sum_probs=27.8

Q ss_pred             CCCceeccccceeccccccceecCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      ++|-|.|..|.+.|.+.-..|..|++|++.
T Consensus         2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence            468999999999999999999999999864

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=97.23  E-value=0.0002  Score=50.05  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=28.4

Q ss_pred             CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST   52 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st   52 (168)
                      ....|.|..|||.|.+...-|.||.++++...
T Consensus         5 ~~~~W~CP~CTf~N~p~~p~CEmC~~prp~~~   36 (64)
T 3b08_B            5 MPVGWQCPGCTFINKPTRPGCEMCCRARPETY   36 (64)
T ss_dssp             CCCSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred             CCCCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence            34579999999999999999999999988754

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=96.69  E-value=0.00088  Score=40.66  Aligned_cols=30  Identities=33%  Similarity=0.766  Sum_probs=27.9

Q ss_pred             CCCceeccccceeccccccceecCCCCCCC
Q psy3565          21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      .+|-|.|..|-+.|.+.-..|-.|.+|++.
T Consensus         3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            3 SANDWQCKTCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCcccCCCCCccccccccccccCCcCCC
Confidence            578899999999999999999999999864

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=95.85  E-value=0.0053  Score=39.63  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=29.3

Q ss_pred             CCCCceecc--ccceeccccccceecCCCCCCCC
Q psy3565          20 KDENYWDCS--VCTYRNVAEAFKCSMCDVRKGTS   51 (168)
Q Consensus        20 k~eg~WdCs--vCt~rN~asA~KCv~C~tpk~~s   51 (168)
                      .++|-|.|.  .|-+.|.+.-..|-.|.+|++..
T Consensus        10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A           10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            478999999  89999999999999999998763

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=92.46  E-value=0.023  Score=52.84  Aligned_cols=27  Identities=26%  Similarity=0.548  Sum_probs=0.0

Q ss_pred             ceeccccceeccccccceecCCCCCCC
Q psy3565          24 YWDCSVCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        24 ~WdCsvCt~rN~asA~KCv~C~tpk~~   50 (168)
                      .-.|+.|||.|-|+-..|.||+++=+.
T Consensus       180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~  206 (566)
T 1w7p_D          180 ENICPACTFANHPQIGNCEICGHRLPN  206 (566)
T ss_dssp             ---------------------------
T ss_pred             CCCCCcccccCChhhhcccccCCcCCC
Confidence            466999999999999999999999876

>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1

Probab=88.33  E-value=0.18  Score=36.29  Aligned_cols=29  Identities=24%  Similarity=0.588  Sum_probs=23.0

Q ss_pred             CCceeccccceecccccc---------ceecCCCCCCC
Q psy3565          22 ENYWDCSVCTYRNVAEAF---------KCSMCDVRKGT   50 (168)
Q Consensus        22 eg~WdCsvCt~rN~asA~---------KCv~C~tpk~~   50 (168)
                      ...|-|..|.|-|...+.         .|++|+.+...
T Consensus        15 ~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~   52 (76)
T 2j9u_B           15 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADY   52 (76)
T ss_dssp             CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCH
T ss_pred             ccceECccccccCcCccccCCCCCCCCcccccCccCCH
Confidence            357999999999986554         69999887654

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=84.77  E-value=0.18  Score=46.92  Aligned_cols=34  Identities=24%  Similarity=0.526  Sum_probs=0.0

Q ss_pred             CCceeccccceecccc---------ccceecCCCCCCCCCCCC
Q psy3565          22 ENYWDCSVCTYRNVAE---------AFKCSMCDVRKGTSTRKP   55 (168)
Q Consensus        22 eg~WdCsvCt~rN~as---------A~KCv~C~tpk~~strk~   55 (168)
                      ...|.|.+|.|.|.+.         ...|.+|+.+.+..+-+.
T Consensus       115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~  157 (566)
T 1w7p_D          115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKS  157 (566)
T ss_dssp             -------------------------------------------
T ss_pred             ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhh
Confidence            4579999999999963         468999999987766443

>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}

Probab=80.69  E-value=1.4  Score=26.60  Aligned_cols=16  Identities=38%  Similarity=0.505  Sum_probs=14.5

Q ss_pred             EEEEeCCeeEEEeecc
Q psy3565         118 LEITVNNLTVKVTEFK  133 (168)
Q Consensus       118 ~eVTVg~vTViITefK  133 (168)
                      .+||+|.+||.|.||.
T Consensus         5 tdvt~n~ltvTi~e~~   20 (30)
T 3gs2_B            5 TDITANSITVTFREAQ   20 (30)
T ss_dssp             EEEEETTEEEEEEEES
T ss_pred             EEeecCcEEEEEEecC
Confidence            5799999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2gqea1	29	g.41.11.1 (A:3-31) Nuclear pore complex protein nu	0.003

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.003
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 25 WDCSVCTYRNVAEAFKCSMCDVRK 48
          WDC  C  +N  EA KC  C+  K
Sbjct: 5  WDCDTCLVQNKPEAIKCVACETPK 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	99.14
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.45
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	95.45
d1dx8a_	70	Rubredoxin {Guillardia theta [TaxId: 55529]}	83.9
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	81.76

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.1e-12  Score=75.03  Aligned_cols=28  Identities=39%  Similarity=0.888  Sum_probs=26.8

Q ss_pred             CCceeccccceeccccccceecCCCCCC
Q psy3565          22 ENYWDCSVCTYRNVAEAFKCSMCDVRKG   49 (168)
Q Consensus        22 eg~WdCsvCt~rN~asA~KCv~C~tpk~   49 (168)
                      -|.|+|++|.++|.+++.+|++|++|||
T Consensus         2 ~GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           2 IGTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             cceeECCceEeEChhhCCEEeecCCCCC
Confidence            4899999999999999999999999987

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=2.2e-05  Score=46.81  Aligned_cols=27  Identities=30%  Similarity=0.865  Sum_probs=24.9

Q ss_pred             CCceeccccceeccccccceecCCCCC
Q psy3565          22 ENYWDCSVCTYRNVAEAFKCSMCDVRK   48 (168)
Q Consensus        22 eg~WdCsvCt~rN~asA~KCv~C~tpk   48 (168)
                      ...|.|.-|||.|.+..-.|.||.-|+
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEeeeeeeecCCCCCcchhhccCC
Confidence            457999999999999999999999886

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0037  Score=39.40  Aligned_cols=30  Identities=30%  Similarity=0.637  Sum_probs=28.2

Q ss_pred             CCCceecc--ccceeccccccceecCCCCCCC
Q psy3565          21 DENYWDCS--VCTYRNVAEAFKCSMCDVRKGT   50 (168)
Q Consensus        21 ~eg~WdCs--vCt~rN~asA~KCv~C~tpk~~   50 (168)
                      .+|-|.|+  .|-+.|.+.-..|--|++|++.
T Consensus        11 ~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~   42 (45)
T d1n0za_          11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT   42 (45)
T ss_dssp             CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred             CCCCccCCCCCCCCeeccccCcccCCCCcCCC
Confidence            78999997  7999999999999999999875

>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Guillardia theta [TaxId: 55529]

Probab=83.90  E-value=0.2  Score=33.63  Aligned_cols=29  Identities=31%  Similarity=0.914  Sum_probs=24.1

Q ss_pred             CCCceecccccee-------------------ccccccceecCCCCCC
Q psy3565          21 DENYWDCSVCTYR-------------------NVAEAFKCSMCDVRKG   49 (168)
Q Consensus        21 ~eg~WdCsvCt~r-------------------N~asA~KCv~C~tpk~   49 (168)
                      ..|.|-|.+|-|.                   +.+....|..|.++|.
T Consensus         4 ~~~ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~K~   51 (70)
T d1dx8a_           4 DEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKN   51 (70)
T ss_dssp             CSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGG
T ss_pred             cCCeEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCcHH
Confidence            5789999999873                   4478889999999874

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=81.76  E-value=0.26  Score=30.50  Aligned_cols=26  Identities=31%  Similarity=0.911  Sum_probs=21.5

Q ss_pred             ceecccccee------------ccccccceecCCCCCC
Q psy3565          24 YWDCSVCTYR------------NVAEAFKCSMCDVRKG   49 (168)
Q Consensus        24 ~WdCsvCt~r------------N~asA~KCv~C~tpk~   49 (168)
                      +|-|.+|-|.            ..+....|..|+++|.
T Consensus         3 ~y~C~~CgyiYd~~~Gdgt~Fe~LP~dw~CP~C~a~K~   40 (45)
T d6rxna_           3 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKD   40 (45)
T ss_dssp             CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGG
T ss_pred             CeEeCCCCeEECcccCCCCCHHHCCCCCCCcCCCCcHH
Confidence            6999999874            5678889999999863