Psyllid ID: psy3566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MKFNAFSSVSDSGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHcccEEcccccccccEEEEEEEcccccEEEEEEEEccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccEEcccccccccEEEEEEEcccccEEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mkfnafssvsdsgskttnlfepdyldhlnpeiplydevnvqlkgydfpvleSYQKFVYKIAASLsiqsdeswalppqkfnitrmepnssvvdanyhlRIYERNVQ
Flexible Loop (DISEMBL)
mkfnafssvsdsgskttnLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFnitrmepnssvvdanyhlriyernvq
Low Complexity Region (SEG)
MKFNAFSSVSDSGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Disordered region (IsUnstruct)
******************LFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNIT*******VVDANYHLRIY*****
Disordered Region (DISOPRED)
****************TNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Disordered Region (DISEMBL)
*************SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Disordered Region (DISPRO)
****************TNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFNAFSSVSDSGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q96GC5	212	39S ribosomal protein L48	yes	N/A	0.676	0.334	0.323	4e-06
Q8JZS9	211	39S ribosomal protein L48	no	N/A	0.657	0.327	0.342	5e-06
Q2YDI5	212	39S ribosomal protein L48	yes	N/A	0.676	0.334	0.295	3e-05

>sp|Q96GC5|RM48_HUMAN 39S ribosomal protein L48, mitochondrial OS=Homo sapiens GN=MRPL48 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query: 35  YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
           Y  +N+ L  YD  + ESY ++V+ +  SLSI+ +ES+A+P +   + +++   S +  +
Sbjct: 88  YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 147

Query: 95  YHLRIYERNVQ 105
             L  +ER VQ
Sbjct: 148 SVLTTHERVVQ 158

Homo sapiens (taxid: 9606)

>sp|Q8JZS9|RM48_MOUSE 39S ribosomal protein L48, mitochondrial OS=Mus musculus GN=Mrpl48 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 35  YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRM--EPNSSVVD 92
           Y  +N+ L  YD  + ESY ++V+++   LSI+ +ES+A+P +   + R+  + N  V+D
Sbjct: 87  YGVLNIHLTAYDMSLAESYAQYVHRLCNRLSIKVEESYAMPTKTMEVMRLPDQGNKMVLD 146

Query: 93  ANYHLRIYERNVQ 105
           +   L  +ER VQ
Sbjct: 147 SV--LTTHERVVQ 157

Mus musculus (taxid: 10090)

>sp|Q2YDI5|RM48_BOVIN 39S ribosomal protein L48, mitochondrial OS=Bos taurus GN=MRPL48 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%)

Query: 35  YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
           Y  +N+ L  YD  + ESY ++V+ +   LSI+ +ES+A+P +   + +++   + +  +
Sbjct: 88  YGTLNIHLIAYDMALTESYAQYVHNLCNHLSIKVEESYAMPTKTMEVLQLQDQGNKMLLD 147

Query: 95  YHLRIYERNVQ 105
             L  +ER VQ
Sbjct: 148 SVLTTHERVVQ 158

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
239789731	202	hypothetical protein [Acyrthosiphon pisu	0.838	0.435	0.534	8e-24
237858753	185	mitochondrial ribosomal protein L48 [Acy	0.838	0.475	0.534	1e-23
158285553	184	AGAP007507-PA [Anopheles gambiae str. PE	0.933	0.532	0.494	1e-22
195386306	181	GJ10177 [Drosophila virilis] gi|19414830	0.933	0.541	0.448	1e-21
307214964	173	39S ribosomal protein L48, mitochondrial	0.876	0.531	0.478	2e-21
194854219	181	GG24803 [Drosophila erecta] gi|190660176	0.876	0.508	0.478	2e-21
157121535	171	mitochondrial ribosomal protein, L48, pu	0.847	0.520	0.460	3e-21
195470533	181	GE17681 [Drosophila yakuba] gi|194173662	0.876	0.508	0.478	3e-21
195350385	181	GM16828 [Drosophila sechellia] gi|194123	0.876	0.508	0.478	3e-21
289743095	189	mitochondrial ribosomal protein L48 [Glo	0.971	0.539	0.456	4e-21

>gi|239789731|dbj|BAH71469.1| hypothetical protein [Acyrthosiphon pisum]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 68/88 (77%)

Query: 18  NLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQ 77
           +++EP+YLD L P+IP Y+EVN+Q+KGYDF +LES+QK V+ IA ++ ++  + WALPPQ
Sbjct: 35  SIYEPEYLDLLKPDIPEYEEVNIQIKGYDFAILESFQKLVHTIAENMDLEVSDGWALPPQ 94

Query: 78  KFNITRMEPNSSVVDANYHLRIYERNVQ 105
             N+ R+ PNS  V+A Y L +YERN+Q
Sbjct: 95  TINVKRLVPNSENVEAQYTLNVYERNIQ 122

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237858753|ref|NP_001153816.1| mitochondrial ribosomal protein L48 [Acyrthosiphon pisum]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 68/88 (77%)

Query: 18  NLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQ 77
           +++EP+YLD L P+IP Y+EVN+Q+KGYDF +LES+QK V+ IA ++ ++  + WALPPQ
Sbjct: 35  SIYEPEYLDLLKPDIPEYEEVNIQIKGYDFAILESFQKLVHTIAENMDLEVSDGWALPPQ 94

Query: 78  KFNITRMEPNSSVVDANYHLRIYERNVQ 105
             N+ R+ PNS  V+A Y L +YERN+Q
Sbjct: 95  TINVKRLVPNSENVEAQYTLNVYERNIQ 122

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285553|ref|XP_001687910.1| AGAP007507-PA [Anopheles gambiae str. PEST] gi|157020047|gb|EDO64559.1| AGAP007507-PA [Anopheles gambiae str. PEST]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 8   SVSDSGSKTTN-LFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSI 66
           S S S    TN ++EPDYL+ L P+ PLY+ +NV +KGYD+P+LESYQ+F++ +A S+ +
Sbjct: 23  SFSHSAFTCTNRMYEPDYLELLKPKYPLYETLNVTIKGYDYPLLESYQRFIHNVADSMDL 82

Query: 67  QSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
           +  + +A PPQK N+ + +PNSSV+D+ Y L +YER VQ
Sbjct: 83  EIADGYAQPPQKLNVQKFKPNSSVIDSEYKLTVYERTVQ 121

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386306|ref|XP_002051845.1| GJ10177 [Drosophila virilis] gi|194148302|gb|EDW64000.1| GJ10177 [Drosophila virilis]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 73/98 (74%)

Query: 8   SVSDSGSKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQ 67
           +V+ + S + +++EPDYL+ L P+ P Y+ +NVQ+KGYD+P+LESYQ+F++ +A  L + 
Sbjct: 19  AVTATRSSSYSVYEPDYLESLKPKFPQYESLNVQIKGYDYPLLESYQRFLHSVAEYLDLD 78

Query: 68  SDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
             + +ALPPQ+  + R+ PNS+V+++ Y L  YERN+Q
Sbjct: 79  VSDCYALPPQQTQVQRLRPNSTVIESEYKLTTYERNLQ 116

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214964|gb|EFN89809.1| 39S ribosomal protein L48, mitochondrial [Harpegnathos saltator]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 14  SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWA 73
           ++ + LFEPDYL+    + PL   +N+QLKGYD+P+LE+YQK +YK++ ++ I  D SWA
Sbjct: 24  ARFSKLFEPDYLETGKSKFPLLPVLNIQLKGYDYPILENYQKIIYKLSEAMQIDIDNSWA 83

Query: 74  LPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
            PPQ+  I R +P +S++ A Y+L++YERN+Q
Sbjct: 84  YPPQELKIQRYKPKTSIIVAQYNLKLYERNIQ 115

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194854219|ref|XP_001968309.1| GG24803 [Drosophila erecta] gi|190660176|gb|EDV57368.1| GG24803 [Drosophila erecta]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 14  SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWA 73
           S + +++EPDYL+ L P+ P YD +NVQ+KGYD+P LESYQ+F++ +A  L +   + +A
Sbjct: 25  STSGSVYEPDYLESLKPQFPQYDSLNVQIKGYDYPQLESYQRFLHGVAEYLELDVSDCYA 84

Query: 74  LPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
           LPPQ+  + R+ PNS+V+++ Y L  YERN+Q
Sbjct: 85  LPPQQTTVQRLRPNSTVIESEYKLTTYERNLQ 116

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121535|ref|XP_001659904.1| mitochondrial ribosomal protein, L48, putative [Aedes aegypti] gi|108874633|gb|EAT38858.1| AAEL009288-PA [Aedes aegypti]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 69/89 (77%)

Query: 17  TNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP 76
           ++++EPDYL+ L P+ PLY+ +N  +KGYD+P+LESYQ+FV+ +A ++ +   + WA PP
Sbjct: 20  SSMYEPDYLEKLRPKYPLYNTLNFTIKGYDYPILESYQRFVHNVADTMDLDIADCWAQPP 79

Query: 77  QKFNITRMEPNSSVVDANYHLRIYERNVQ 105
           QK N+ + +P+S+V+++ Y L +Y+RNVQ
Sbjct: 80  QKLNVQKFKPSSAVIESEYKLTVYQRNVQ 108

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470533|ref|XP_002087561.1| GE17681 [Drosophila yakuba] gi|194173662|gb|EDW87273.1| GE17681 [Drosophila yakuba]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 14  SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWA 73
           S + +++EPDYL+ L P+ P YD +NVQ+KGYD+P LESYQ+F++ +A  L +   + +A
Sbjct: 25  STSGSVYEPDYLESLKPKFPQYDSLNVQIKGYDYPQLESYQRFLHGVAEYLDLDVSDCYA 84

Query: 74  LPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
           LPPQ+  + R+ PNS+V+++ Y L  YERN+Q
Sbjct: 85  LPPQQTTVQRLRPNSTVIESEYKLTTYERNLQ 116

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350385|ref|XP_002041721.1| GM16828 [Drosophila sechellia] gi|194123494|gb|EDW45537.1| GM16828 [Drosophila sechellia]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 14  SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWA 73
           S + +++EPDYL+ L P+ P Y+ +NVQ+KGYD+P LESYQ+F++ +A  L +   + +A
Sbjct: 25  STSGSVYEPDYLESLKPKFPQYESLNVQIKGYDYPQLESYQRFLHGVAEYLELDVSDCYA 84

Query: 74  LPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
           LPPQK  + R+ PNS+V+++ Y L  YERN+Q
Sbjct: 85  LPPQKTTVQRLRPNSTVIESEYKLTTYERNLQ 116

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743095|gb|ADD20295.1| mitochondrial ribosomal protein L48 [Glossina morsitans morsitans]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 4   NAFSSVSDSGSK-TTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAA 62
           N   ++SDS +    +L EPDYL+ L P+ P ++ +NVQ+KGYD+P+LESYQ++++K+A 
Sbjct: 23  NTTRNISDSKAFFVKDLHEPDYLESLKPKFPQFENLNVQIKGYDYPILESYQRYLHKVAE 82

Query: 63  SLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
            L I   + +ALPPQ   + R+  NS+ VDA Y L +YERN+ 
Sbjct: 83  YLDIDVADCYALPPQHMTVQRLRANSTAVDAEYRLTVYERNLH 125

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
FB|FBgn0031357	181	mRpL48 "mitochondrial ribosoma	0.876	0.508	0.478	1.6e-22
WB|WBGene00016989	186	CD4.3 [Caenorhabditis elegans	0.809	0.456	0.310	2e-08
UNIPROTKB|B4DN34	194	MRPL48 "39S ribosomal protein	0.676	0.365	0.323	7.2e-07
UNIPROTKB|E1C598	209	MRPL48 "Uncharacterized protei	0.676	0.339	0.309	7.6e-07
RGD|1307576	211	Mrpl48 "mitochondrial ribosoma	0.657	0.327	0.342	1e-06
UNIPROTKB|Q96GC5	212	MRPL48 "39S ribosomal protein	0.676	0.334	0.323	1e-06
MGI|MGI:1289321	211	Mrpl48 "mitochondrial ribosoma	0.657	0.327	0.342	1.8e-06
UNIPROTKB|F1PWD1	176	F1PWD1 "Uncharacterized protei	0.676	0.403	0.309	2.1e-06
UNIPROTKB|J9P5B3	200	J9P5B3 "Uncharacterized protei	0.676	0.355	0.309	3.2e-06
ZFIN|ZDB-GENE-041008-125	207	mrpl48 "mitochondrial ribosoma	0.647	0.328	0.308	6.2e-06

FB|FBgn0031357 mRpL48 "mitochondrial ribosomal protein L48" [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query:    14 SKTTNLFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWA 73
             S + +++EPDYL+ L P+ P Y+ +NVQ+KGYD+P LESYQ+F++ +A  L +   + +A
Sbjct:    25 STSGSVYEPDYLESLKPKFPQYESLNVQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYA 84

Query:    74 LPPQKFNITRMEPNSSVVDANYHLRIYERNVQ 105
             LPPQK  + R+ PNS+V+++ Y L  YERN+Q
Sbjct:    85 LPPQKTTVQRLRPNSTVIESEYKLTTYERNLQ 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

WB|WBGene00016989 CD4.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query:    19 LFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQK 78
             L+EP + D  + E P Y+ +NV+++G+DF  LE YQ +++K A        +S+A+  Q 
Sbjct:    34 LYEPKFQD--SREFPEYNTINVRIQGHDFGSLEKYQAYIHKTAKRFGFTVVDSYAVAAQT 91

Query:    79 FNITRMEPNSSVVDANYHLRIYERNVQ 105
                   +P S+V ++   +  Y+R V+
Sbjct:    92 QKAITYKPYSTVSESEIDMSTYDRVVR 118

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|B4DN34 MRPL48 "39S ribosomal protein L48, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
             Y  +N+ L  YD  + ESY ++V+ +  SLSI+ +ES+A+P +   + +++   S +  +
Sbjct:    70 YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 129

Query:    95 YHLRIYERNVQ 105
               L  +ER VQ
Sbjct:   130 SVLTTHERVVQ 140

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|E1C598 MRPL48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 22/71 (30%), Positives = 43/71 (60%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
             Y ++N+Q+  YD  ++E + ++V+K+   LSI+ +ES+A+P +   +  ME   S +  +
Sbjct:    85 YGDINIQMTSYDMCLVEHFAQYVHKLCNQLSIRVNESYAMPTKTNEVLFMEERGSKMQVD 144

Query:    95 YHLRIYERNVQ 105
               L  ++R VQ
Sbjct:   145 AVLTTHQRVVQ 155

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

RGD|1307576 Mrpl48 "mitochondrial ribosomal protein L48" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRM--EPNSSVVD 92
             Y  +N+ L  YD  + ESY ++V+++   LSI+ +ES+A+P +   + R+  + N  V+D
Sbjct:    87 YGVLNIHLTAYDMTLAESYARYVHRLCNQLSIKVEESYAMPTKTMEVMRLPDQGNKMVLD 146

Query:    93 ANYHLRIYERNVQ 105
             +   L  +ER VQ
Sbjct:   147 SV--LTTHERVVQ 157

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q96GC5 MRPL48 "39S ribosomal protein L48, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
             Y  +N+ L  YD  + ESY ++V+ +  SLSI+ +ES+A+P +   + +++   S +  +
Sbjct:    88 YGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQDQGSKMLLD 147

Query:    95 YHLRIYERNVQ 105
               L  +ER VQ
Sbjct:   148 SVLTTHERVVQ 158

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

MGI|MGI:1289321 Mrpl48 "mitochondrial ribosomal protein L48" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 25/73 (34%), Positives = 44/73 (60%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRM--EPNSSVVD 92
             Y  +N+ L  YD  + ESY ++V+++   LSI+ +ES+A+P +   + R+  + N  V+D
Sbjct:    87 YGVLNIHLTAYDMSLAESYAQYVHRLCNRLSIKVEESYAMPTKTMEVMRLPDQGNKMVLD 146

Query:    93 ANYHLRIYERNVQ 105
             +   L  +ER VQ
Sbjct:   147 SV--LTTHERVVQ 157

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1PWD1 F1PWD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
             Y  +N+ L  YD  + ESY ++V+ +   LSI+ +ES+A+P +   + R++   + +  +
Sbjct:    52 YGVLNIHLTAYDMALAESYAQYVHHLCNHLSIKVEESYAMPTKTMEVLRLQDQGNKMLLD 111

Query:    95 YHLRIYERNVQ 105
               L  +ER VQ
Sbjct:   112 SVLTTHERVVQ 122

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P5B3 J9P5B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query:    35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN 94
             Y  +N+ L  YD  + ESY ++V+ +   LSI+ +ES+A+P +   + R++   + +  +
Sbjct:    88 YGVLNIHLTAYDMALAESYAQYVHHLCNHLSIKVEESYAMPTKTMEVLRLQDQGNKMLLD 147

Query:    95 YHLRIYERNVQ 105
               L  +ER VQ
Sbjct:   148 SVLTTHERVVQ 158

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-041008-125 mrpl48 "mitochondrial ribosomal protein L48" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query:    38 VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHL 97
             +NV + GYD  ++E Y ++++ +   L I+ DES+ALP +   +  M+     +  +  L
Sbjct:    84 INVCVSGYDMTLVEHYSQYIHNLCKRLDIKVDESYALPTKSTEVMVMQEQGMKMFVDAVL 143

Query:    98 RIYERNVQ 105
             + +ER VQ
Sbjct:   144 KTHERVVQ 151

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
pfam00338	97	pfam00338, Ribosomal_S10, Ribosomal protein S10p/S	2e-07

>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 38  VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDA---- 93
           + ++LK YD  +LESY KF+ + A  L I+      LP ++  +T +   S  VD     
Sbjct: 1   IRIKLKSYDHKLLESYVKFIVEAAKRLGIKVSGPIPLPTKRLRVTVL--RSPHVDKKSRE 58

Query: 94  NYHLRIYERNVQ 105
            + +R ++R + 
Sbjct: 59  QFEMRTHKRLID 70

This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
CHL00135	101	rps10 ribosomal protein S10; Validated	99.93
COG0051	104	RpsJ Ribosomal protein S10 [Translation, ribosomal	99.92
PRK00596	102	rpsJ 30S ribosomal protein S10; Reviewed	99.92
PF00338	97	Ribosomal_S10: Ribosomal protein S10p/S20e; InterP	99.92
TIGR01049	99	rpsJ_bact ribosomal protein S10, bacterial/organel	99.92
KOG4060|consensus	176		99.92
PRK12271	102	rps10p 30S ribosomal protein S10P; Reviewed	99.89
TIGR01046	99	S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S2	99.88
PTZ00039	115	40S ribosomal protein S20; Provisional	99.88
KOG3321|consensus	175		99.85
KOG0900|consensus	121		98.21

>CHL00135 rps10 ribosomal protein S10; Validated

Probab=99.93  E-value=3.1e-26  Score=159.26  Aligned_cols=70  Identities=16%  Similarity=0.283  Sum_probs=68.2

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+++.+|.++|+.+|+.+.||+||||  .++||+||||++|++|||||+|+|+|+|+
T Consensus         7 ~kirI~LkS~d~~~L~~~~~~I~~~~k~~~~~~~GpipLPtk~~~~TvlrSPhv~KkSrEqfE~r~hKRlI~   78 (101)
T CHL00135          7 AKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVDKDSREHFEIRTHKRIID   78 (101)
T ss_pred             CeEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEeCCcCCCcEEEEEEEecCCCCCCchHHhhhheeeeEEEE
Confidence            57999999999999999999999999999999999999999  79999999999999999999999999985

>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=7.8e-26  Score=158.54  Aligned_cols=70  Identities=14%  Similarity=0.317  Sum_probs=68.1

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++++|+|+|||+.+||.++++|+++|+++|+.|.||+||||  .++||+||||++++++||||+|||+|+|+
T Consensus         4 ~kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~k~s~e~fEmr~HkRlid   75 (104)
T COG0051           4 QKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKDSREQFEMRTHKRLID   75 (104)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCCCchHHHhhhheeeeEEE
Confidence            48999999999999999999999999999999999999999  69999999999999999999999999985

>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed

Probab=99.92  E-value=7.7e-26  Score=156.70  Aligned_cols=71  Identities=18%  Similarity=0.343  Sum_probs=68.6

Q ss_pred             cceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          35 YDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        35 y~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      .++|+|+|+|||+.+||+++++|.++|+.+|++|.||+||||  .++||+||||++|++|||||+|||+|+|+
T Consensus         3 ~~~irI~l~S~d~~~L~~~~~~i~~~a~~~~i~v~GpipLPtk~~r~tvlrSPhv~KksreqfE~r~hkR~i~   75 (102)
T PRK00596          3 KQKIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLID   75 (102)
T ss_pred             CcEEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEECCcCCCcEEEEEEEeeCCCCCCCHHHHhhhhhheEEEE
Confidence            467999999999999999999999999999999999999999  79999999999999999999999999985

>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.92  E-value=1e-25  Score=151.86  Aligned_cols=68  Identities=31%  Similarity=0.547  Sum_probs=66.3

Q ss_pred             EEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          38 VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        38 inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      |+|+|+|||+.+||+|+++|+++|+.+|+++.|||||||  .++|++||||++|++|+|||+++|+|+||
T Consensus         1 i~I~l~s~d~~~l~~~~~~i~~~~~~~~~~~~~~~~lPtk~~~~tvlrSPhv~kks~eqfe~~~~kr~i~   70 (97)
T PF00338_consen    1 IRIKLKSYDKKLLESYVKFIHKLAKNLGIKVSGPIPLPTKKKRFTVLRSPHVDKKSREQFEIRTHKRLIQ   70 (97)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHCTSSCEEEEEEEEEEEEEEEEESSSSSSTTSEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCccEEEEEEeecCcCCcchhhheeeeeeEEEEE
Confidence            799999999999999999999999999999999999999  69999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....

>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle

Probab=99.92  E-value=1e-25  Score=155.11  Aligned_cols=70  Identities=19%  Similarity=0.366  Sum_probs=67.7

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+|+++|.++|+.+|+++.||+||||  .++||+||||++||+|||||+|||+|+|+
T Consensus         1 ~~irI~l~s~d~~~L~~~~~~i~~~a~~~gi~~~gpi~LPtk~~~~tvlrSPhv~kksreqfE~r~hkR~i~   72 (99)
T TIGR01049         1 QKIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLID   72 (99)
T ss_pred             CeEEEEEEECCHHHHHHHHHHHHHHHHHcCCceecccCCCCEEEEEEEeeCCCCCCCHHHHhhhhhheEEEE
Confidence            46999999999999999999999999999999999999999  69999999999999999999999999985

This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.

>KOG4060|consensus

Probab=99.92  E-value=2.4e-25  Score=165.97  Aligned_cols=85  Identities=40%  Similarity=0.706  Sum_probs=79.7

Q ss_pred             CCCccccccCCCCCCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCCceEEEEecCCCCcceeeeEEec
Q psy3566          19 LFEPDYLDHLNPEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLR   98 (105)
Q Consensus        19 l~eP~yl~~~~~~~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~~tVlrs~hv~kk~r~qfelr   98 (105)
                      ++||++.+.  .++|+|+.|||+++|||+.+||+||.|||++|+.+|++|.+|||+||++.+|++.++.+++|..++.|.
T Consensus        38 ~~ePKf~~~--re~~ey~~lNV~i~gyD~~~lEsYq~yvH~la~~l~~~V~dsYA~p~qt~~v~~l~p~stv~ese~~lt  115 (176)
T KOG4060|consen   38 AEEPKFKKE--REINEYGVLNVHITGYDMTLLESYQQYVHNLANSLSIKVEDSYAMPTQTIEVLQLQPQSTVMESESVLT  115 (176)
T ss_pred             hhCCcccch--hcccccceEEEEEEecccchHHHHHHHHHHHHHHcCceeEeeeccCccceeEEEecCCceeeehhhhhh
Confidence            566666664  677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecC
Q psy3566          99 IYERNVQ  105 (105)
Q Consensus        99 th~R~Iq  105 (105)
                      ||+|+||
T Consensus       116 TyeRvvq  122 (176)
T KOG4060|consen  116 TYERVVQ  122 (176)
T ss_pred             hhhheee
Confidence            9999997

>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed

Probab=99.89  E-value=2e-23  Score=145.33  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||.+++.|.++|+++|+++.||+||||  .++||+||||++ |++|+|||+|+|+|+|+
T Consensus         2 ~~irI~L~S~d~~~Ld~~~~~I~~~~k~~g~~~~GPipLPtk~~~~tv~rSPh~~gk~sreqfE~r~hKRlid   74 (102)
T PRK12271          2 QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATWDHWEMRIHKRLID   74 (102)
T ss_pred             ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEECCCcCCceeEEEEeeeCCCCCCCcchHHeEEEEeEEEEE
Confidence            46999999999999999999999999999999999999999  699999999965 99999999999999984

>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic)

Probab=99.88  E-value=7.1e-23  Score=141.77  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCC-CcceeeeEEecceeeecC
Q psy3566          37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPN-SSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv-~kk~r~qfelrth~R~Iq  105 (105)
                      +|+|+|+|||+.+||++++.|.++|++.|+++.||+||||  .++||+||||+ ++++++|||+|+|+|+|+
T Consensus         2 ~irI~L~S~d~~~Ld~~~~~I~~~ak~~g~~~~GPipLPtk~~~~tv~rsPh~~~~ks~e~fE~r~hKRlid   73 (99)
T TIGR01046         2 KARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTWDRWEMRIHKRLID   73 (99)
T ss_pred             cEEEEEEECCHHHHHHHHHHHHHHHHHcCCEEECCccCCcceEEEEeeeCCCCCCCcchHheEEEEEEEEEE
Confidence            6999999999999999999999999999999999999999  68999999995 458999999999999984

its equivalents in eukaryotes.

>PTZ00039 40S ribosomal protein S20; Provisional

Probab=99.88  E-value=1.1e-22  Score=144.47  Aligned_cols=73  Identities=11%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             CccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCC-CcceeeeEEecceeeecC
Q psy3566          33 PLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPN-SSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        33 ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv-~kk~r~qfelrth~R~Iq  105 (105)
                      +.-++|+|+|+|||+.+||+++..|.+.|+++|++|.||+||||  .++|++||||+ +|++++|||+|+|+|+|+
T Consensus        14 ~~~~kirI~L~S~d~~~Ld~~~~~Ii~~ak~~g~~v~GPipLPtK~~~~tvlrSPhg~~kksreqfE~RiHKRlId   89 (115)
T PTZ00039         14 NRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRITTRKSPCGEGTNTWDRFEMRIYKRVID   89 (115)
T ss_pred             heeeEEEEEEEECCHHHHHHHHHHHHHHHHHcCCEeECCccCCceeEEEEeeeCCCCCCCchHHHheeeeeeEEEE
Confidence            34568999999999999999999999999999999999999999  68999999996 599999999999999985

>KOG3321|consensus

Probab=99.85  E-value=6.9e-23  Score=153.60  Aligned_cols=85  Identities=27%  Similarity=0.389  Sum_probs=77.9

Q ss_pred             CccccccCC-CCCCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEe
Q psy3566          21 EPDYLDHLN-PEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHL   97 (105)
Q Consensus        21 eP~yl~~~~-~~~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfel   97 (105)
                      ++.|..-++ -+.-+|..+.|+++|||.++||+|..||.++|..+||.+.||+|||+  ++||+|||||++||+++|||.
T Consensus        31 ~a~~~~~lk~~Pdkly~~~ai~lrg~D~avLdsYt~Fi~~ta~~LgIp~~~~~plp~~~Er~TlLrS~fIhKK~k~~yE~  110 (175)
T KOG3321|consen   31 AAVYQNPLKKLPDKLYSLVAIELRGHDKAVLDSYTDFICRTAYYLGIPIKGPEPLPKKRERWTLLRSPFIHKKSKENYER  110 (175)
T ss_pred             cccccCccccCchhhcceeeEEeccCchHHHHHHHHHHHHHHHHhCCccCCCCCCchhhhhhhhhhchhhhhHHhhhHHH
Confidence            466766666 44457888999999999999999999999999999999999999999  899999999999999999999


Q ss_pred             cceeeecC
Q psy3566          98 RIYERNVQ  105 (105)
Q Consensus        98 rth~R~Iq  105 (105)
                      |||.|+|+
T Consensus       111 rTH~R~i~  118 (175)
T KOG3321|consen  111 RTHSRLIE  118 (175)
T ss_pred             HHHHHHHH
Confidence            99999985

>KOG0900|consensus

Probab=98.21  E-value=5.4e-07  Score=65.01  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCC-CCcceeeeEEecceeeecC
Q psy3566          37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEP-NSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~h-v~kk~r~qfelrth~R~Iq  105 (105)
                      .++|.+.+--..-||.-.+-|.+.|+.-++++.||..+||  +++|+.+.|+ .+++-...|++|+|+|+|+
T Consensus        21 ~~~it~~~~~~kslekvC~dl~~~ak~~nl~~kg~vr~Ptk~~~itt~k~p~g~g~k~w~~f~mRiH~R~id   92 (121)
T KOG0900|consen   21 KIRITLTSQKVKSLEKVCADLVRGAKEKNLKVKGPVRLPTKVLKITTRKTPCGEGSKTWDRFEMRVHKRLID   92 (121)
T ss_pred             ccceeeeHHHHHHHHHHHHHHHHHHhhcCCcccCcccCCceeEEEEEeecCCcCCccHHHHHHHHHHHHHhc
Confidence            3566677777888999999999999999999999999999  6889999999 7999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3r8n_J	98	30S ribosomal protein S10; protein biosynthesis, R	99.94
2vqe_J	105	30S ribosomal protein S10, 30S ribosomal protein S	99.93
3u5c_U	121	40S ribosomal protein S20; translation, ribosome,	99.93
2xzm_J	120	Ribosomal protein S10 containing protein; ribosome	99.92
3j20_L	102	30S ribosomal protein S10P; archaea, archaeal, KIN	99.92
2zkq_j	119	40S ribosomal protein S20E; protein-RNA complex, 4	99.92
3iz6_J	128	40S ribosomal protein S20 (S10P); eukaryotic ribos	99.91
3bbn_J	197	Ribosomal protein S10; small ribosomal subunit, sp	99.88
3d3c_J	87	30S ribosomal protein S10, N utilization substance	99.6
3r2c_J	83	Protein NUSE, 30S ribosomal protein S10; cross spe	99.41

>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...

Probab=99.93  E-value=1.2e-27  Score=164.92  Aligned_cols=70  Identities=20%  Similarity=0.360  Sum_probs=67.3

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+|+++|+++|+++|++|.||+||||  .++||+||||++||+|+|||+|||+|+||
T Consensus         2 ~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi~LPtk~~~~tvlrSPhv~kksreqfE~r~hkR~I~   73 (105)
T 2vqe_J            2 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVD   73 (105)
T ss_dssp             -CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSCTTCCCEEECCBEEECCC
T ss_pred             cEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCccCCCCEEEEEEEEcCCCCCCChHHhEEeEEEEEEEE
Confidence            46899999999999999999999999999999999999999  58999999999999999999999999986

>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*

Probab=99.93  E-value=5.7e-26  Score=161.22  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             CCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566          32 IPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ  105 (105)
Q Consensus        32 ~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq  105 (105)
                      .+..++|+|+|+|||+.+||+++.+|.++|+++|++|.||+||||  .++||+||||++ |++|+|||+|||+|+|+
T Consensus        16 ~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlId   92 (121)
T 3u5c_U           16 QQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYID   92 (121)
T ss_dssp             CCCCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEE
T ss_pred             cccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEE
Confidence            567889999999999999999999999999999999999999999  799999999996 99999999999999985

>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J

Probab=99.92  E-value=1.1e-25  Score=159.19  Aligned_cols=73  Identities=14%  Similarity=0.176  Sum_probs=70.4

Q ss_pred             CccceEEEEEeecChhHHhhHHHHHHHHHHH-cCCeeeccccCCC--ceEEEEecCC-CCcceeeeEEecceeeecC
Q psy3566          33 PLYDEVNVQLKGYDFPVLESYQKFVYKIAAS-LSIQSDESWALPP--QKFNITRMEP-NSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        33 ply~~inIklkgyD~~lLe~~~~~I~~~a~~-~gi~V~g~~aLPt--~~~tVlrs~h-v~kk~r~qfelrth~R~Iq  105 (105)
                      +.+++|+|+|+|||+.+||+++.+|.++|++ +|+.|.||+||||  .++||+|||| ++|++|+|||+|||+|+|+
T Consensus        14 ~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPipLPtk~~~~TvlRSPhgv~kksreqFE~RthKRlId   90 (120)
T 2xzm_J           14 VKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKRIID   90 (120)
T ss_dssp             CCCEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEEECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEEEEE
T ss_pred             ccceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCcCCCceeEEEEEEeCCCCCCCcchHheEEEEEEEEEE
Confidence            5678999999999999999999999999999 9999999999999  6999999999 9999999999999999985

>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.92  E-value=3.6e-26  Score=157.61  Aligned_cols=70  Identities=13%  Similarity=0.261  Sum_probs=67.9

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+++.+|.++|+++|++|.||+||||  .++||+||||++ ||+|+|||+|||+|+|+
T Consensus         2 ~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlId   74 (102)
T 3j20_L            2 QKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLID   74 (102)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEE
T ss_pred             cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEE
Confidence            57999999999999999999999999999999999999999  799999999998 89999999999999985

>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.92  E-value=4.4e-26  Score=161.06  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCC-CCcceeeeEEecceeeecC
Q psy3566          32 IPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEP-NSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        32 ~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~h-v~kk~r~qfelrth~R~Iq  105 (105)
                      .+.+++|+|+|+|||+.+||+++.+|.++|+++|++|.||+||||  .++||+|||| ++|++|+|||+|||+|+|+
T Consensus        14 ~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhg~~KksreqFE~RthKRlId   90 (119)
T 2zkq_j           14 EVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLID   90 (119)
T ss_dssp             -----CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCC
T ss_pred             cccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCcCCCCeeEEEEEEcCCCCCCCcchHheEeEEEEEEEE
Confidence            467889999999999999999999999999999999999999999  6899999999 6899999999999999986

>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=6.7e-26  Score=162.30  Aligned_cols=76  Identities=12%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             CCCCccceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCC-cceeeeEEecceeeecC
Q psy3566          30 PEIPLYDEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNS-SVVDANYHLRIYERNVQ  105 (105)
Q Consensus        30 ~~~ply~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~-kk~r~qfelrth~R~Iq  105 (105)
                      ...+.+++|+|+|+|||+.+||+++.+|.++|+++|++|.||+||||  .++||+||||++ |++|+|||+|||+|+|+
T Consensus        21 ~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~RtHKRlId   99 (128)
T 3iz6_J           21 SSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVID   99 (128)
T ss_dssp             CCSSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEEEEEEEE
T ss_pred             cccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEEEEEEEE
Confidence            34568899999999999999999999999999999999999999999  799999999999 89999999999999985

>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.88  E-value=9.3e-24  Score=160.51  Aligned_cols=70  Identities=16%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+++.+|.++|+++|++|.||+||||  +++||+||||++|++|+|||+|||+|+|+
T Consensus        99 ~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~KKSREQFEmRtHKRlId  170 (197)
T 3bbn_J           99 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLID  170 (197)
T ss_dssp             CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSCCCEEEEEEEEEEE
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCCCCcceeEEEEEEEEEEE
Confidence            57999999999999999999999999999999999999999  69999999999999999999999999985

>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J

Probab=99.60  E-value=5.3e-16  Score=104.40  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCCceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      ++|+|+|+|||+.+||+++++|+++|+++|++|.||+||||++                   |||+|+|+
T Consensus         9 ~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~-------------------R~HKRlId   59 (87)
T 3d3c_J            9 QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS-------------------RTHLRLVD   59 (87)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET-------------------TEEEEEEE
T ss_pred             eEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCCCCC-------------------ceEEEEEE
Confidence            5899999999999999999999999999999999999999988                   99999985

>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J

Probab=99.41  E-value=1.2e-13  Score=92.37  Aligned_cols=46  Identities=17%  Similarity=0.329  Sum_probs=42.9

Q ss_pred             ceEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCCceEEE
Q psy3566          36 DEVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNI   81 (105)
Q Consensus        36 ~~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt~~~tV   81 (105)
                      ++|+|+|+|||+.+||++++.|+++|+++|++|.||+||||++..+
T Consensus         4 ~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~~~~   49 (83)
T 3r2c_J            4 EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEF   49 (83)
T ss_dssp             CCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEE
T ss_pred             cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCCCcceEE
Confidence            5799999999999999999999999999999999999999965544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d2uubj1	98	d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus	2e-05

>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Thermus thermophilus [TaxId: 274]

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 38  VNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPPQKFNITRMEPNSSVVDAN--- 94
           + ++L+G+D   L++  + + + A     Q      LP +    T           +   
Sbjct: 2   IRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFT--VIRGPFKHKDSRE 59

Query: 95  -YHLRIYER 102
            + LR + R
Sbjct: 60  HFELRTHNR 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2uubj1	98	Ribosomal protein S10 {Thermus thermophilus [TaxId	99.93
d2qalj1	98	Ribosomal protein S10 {Escherichia coli [TaxId: 56	99.93

>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=8.9e-28  Score=162.13  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=67.1

Q ss_pred             eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      +|+|+|+|||+.+||+|+++|+++|+++|++|.||+||||  .++||+||||++|++|+|||+|||+|+||
T Consensus         1 kirI~l~s~d~~~Ld~~~~~i~~~a~~~g~~v~gpipLPtk~~~~tvlrSphv~kksreqfE~rthkR~i~   71 (98)
T d2uubj1           1 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVD   71 (98)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHTHHHHTTSSCCCCEEEEEEEEEEEECCSSSSSCTTCCCEEEEEEEEEEEE
T ss_pred             CEEEEEEEecHHHHHHHHHHHHHHHHHcCCeeccCCCCCcEEEEEEEEecCCCCCchHHHheeeEEEEEEE
Confidence            4899999999999999999999999999999999999999  79999999999999999999999999985

>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.3e-27  Score=157.54  Aligned_cols=69  Identities=17%  Similarity=0.293  Sum_probs=67.1

Q ss_pred             eEEEEEeecChhHHhhHHHHHHHHHHHcCCeeeccccCCC--ceEEEEecCCCCcceeeeEEecceeeecC
Q psy3566          37 EVNVQLKGYDFPVLESYQKFVYKIAASLSIQSDESWALPP--QKFNITRMEPNSSVVDANYHLRIYERNVQ  105 (105)
Q Consensus        37 ~inIklkgyD~~lLe~~~~~I~~~a~~~gi~V~g~~aLPt--~~~tVlrs~hv~kk~r~qfelrth~R~Iq  105 (105)
                      +|+|+|+|||+.+||+++++|.++|+.+|+++.||+||||  .++||+||||++|++|+|||+|||+|+|+
T Consensus         1 kirI~L~s~d~~~Ld~~~~~i~~~a~~~g~~v~GPiplPtk~~~~tvlrSPh~~kksreqfE~r~hkRli~   71 (98)
T d2qalj1           1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVD   71 (98)
T ss_dssp             CBEECEEESSHHHHHHHHHHHHHHHTTSSCCCCBCCCCCCEEEEEEECCSSSSCTTCCEEEEEEEEEECBC
T ss_pred             CEEEEEEeecHHHHHHHHHHHHHHHHHcCCeEECCCCCCcEEEEEEEEecCCCCCchhhheeeeeeEEEEE
Confidence            4899999999999999999999999999999999999999  69999999999999999999999999986