Psyllid ID: psy357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MVHMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN
Secondary Structure (PSIPRED)
cccccccEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEEEcccccccHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHEcccccccccccHHHccccccccccccccccccccEEEEEcccccccccccccccHHHHcccccccccEEEEEEcccccccccccccEcccccEEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVHMEQVHQAVQQSGfkrvkrgykplkvenlvpdivmkesqdpsdpyfpfqwylkntgqnggkaklDLNVEAAWAqgvtgrnitTAIMDDGVDYMHMDLknnynakasydfssndphpyprytddwfnrwnn
Flexible Loop (DISEMBL)
mvhmeqvhqavqqsgfkrvkrgykplkvenlvpdIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWaqgvtgrniTTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN
Low Complexity Region (SEG)
MVHMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN
Disordered region (IsUnstruct)
*********************GYKPLKVENLVPDIV*********PYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDF*******YPRYTDDWFN****
Disordered Region (DISOPRED)
***MEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD****R***
Disordered Region (DISEMBL)
*************SGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN
Disordered Region (DISPRO)
MVHMEQVHQAVQQSGFKRVKRGYKPLKVE*L*******ESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVHMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q03333	638	Neuroendocrine convertase	yes	N/A	0.856	0.177	0.593	2e-34
Q5REC2	638	Neuroendocrine convertase	yes	N/A	0.856	0.177	0.585	3e-34
P16519	638	Neuroendocrine convertase	no	N/A	0.856	0.177	0.585	3e-34
Q9GLR0	638	Neuroendocrine convertase	yes	N/A	0.856	0.177	0.552	2e-33
P21661	637	Neuroendocrine convertase	yes	N/A	0.856	0.177	0.577	2e-33
P28841	637	Neuroendocrine convertase	yes	N/A	0.856	0.177	0.577	5e-33
P23377	793	Furin OS=Rattus norvegicu	no	N/A	0.628	0.104	0.505	8e-20
Q28193	797	Furin OS=Bos taurus GN=FU	no	N/A	0.628	0.104	0.505	1e-19
P09958	794	Furin OS=Homo sapiens GN=	no	N/A	0.628	0.104	0.505	1e-19
P23188	793	Furin OS=Mus musculus GN=	no	N/A	0.628	0.104	0.494	5e-19

>sp|Q03333|NEC2_PIG Neuroendocrine convertase 2 OS=Sus scrofa GN=PCSK2 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 87/123 (70%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           +V +A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct: 94  RVKRALQQEGFDRKKRGYRDI---NEI-DINM------NDPLFTKQWYLINTGQADGTPG 143

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct: 144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query: 126 WFN 128
           WFN
Sbjct: 204 WFN 206

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.
Sus scrofa (taxid: 9823)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 4

>sp|Q5REC2|NEC2_PONAB Neuroendocrine convertase 2 OS=Pongo abelii GN=PCSK2 PE=2 SV=1

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 84/123 (68%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           +V  A+QQ GF R KRGY+ +       DI M      +DP F  QWYL NTGQ  G   
Sbjct: 94  RVKMALQQEGFDRKKRGYRDINE----IDINM------NDPLFTKQWYLINTGQADGTPG 143

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct: 144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query: 126 WFN 128
           WFN
Sbjct: 204 WFN 206

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P16519|NEC2_HUMAN Neuroendocrine convertase 2 OS=Homo sapiens GN=PCSK2 PE=2 SV=2

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 84/123 (68%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           +V  A+QQ GF R KRGY+ +       DI M      +DP F  QWYL NTGQ  G   
Sbjct: 94  RVKMALQQEGFDRKKRGYRDINE----IDINM------NDPLFTKQWYLINTGQADGTPG 143

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct: 144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query: 126 WFN 128
           WFN
Sbjct: 204 WFN 206

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q9GLR0|NEC2_BOVIN Neuroendocrine convertase 2 OS=Bos taurus GN=PCSK2 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 84/123 (68%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           +V +A+QQ GF R KRGY+ +   ++          + +DP F  QWYL NTGQ  G   
Sbjct: 94  RVKRALQQEGFNRKKRGYRDINEIDI----------NVNDPLFTKQWYLINTGQADGTPG 143

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct: 144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query: 126 WFN 128
           W N
Sbjct: 204 WSN 206

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P21661|NEC2_MOUSE Neuroendocrine convertase 2 OS=Mus musculus GN=Pcsk2 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 82/123 (66%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           ++  A+QQ GF R KRGY+ +       DI M      +DP F  QWYL NTGQ  G   
Sbjct: 93  RIKMALQQEGFDRKKRGYRDINE----IDINM------NDPLFTKQWYLFNTGQADGTPG 142

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL  NYNA ASYDFSSNDP+PYPRYTDD
Sbjct: 143 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNADASYDFSSNDPYPYPRYTDD 202

Query: 126 WFN 128
           WFN
Sbjct: 203 WFN 205

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P28841|NEC2_RAT Neuroendocrine convertase 2 OS=Rattus norvegicus GN=Pcsk2 PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 84/123 (68%), Gaps = 10/123 (8%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           ++  A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct: 93  RIKMALQQEGFDRKKRGYRDI---NEI-DINM------NDPLFTKQWYLFNTGQADGTPG 142

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNV  AW  G TG+ +T  IMDDG+DY+H DL  NYN+ ASYDFSSNDP+PYPRYTDD
Sbjct: 143 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLAYNYNSDASYDFSSNDPYPYPRYTDD 202

Query: 126 WFN 128
           WFN
Sbjct: 203 WFN 205

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P23377|FURIN_RAT Furin OS=Rattus norvegicus GN=Furin PE=1 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 6/89 (6%)

Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+ AWAQG TGR I  +I+DDG++  H DL 
Sbjct: 111 QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGRGIVVSILDDGIEKNHPDLA 164

Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
            NY+  AS+D +  DP P PRYT    NR
Sbjct: 165 GNYDPGASFDVNDQDPDPQPRYTQMNDNR 193

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

>sp|Q28193|FURIN_BOVIN Furin OS=Bos taurus GN=FURIN PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 6/89 (6%)

Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+ AWAQG TGR I  +I+DDG++  H DL 
Sbjct: 111 QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGYTGRGIVVSILDDGIEKNHPDLA 164

Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
            NY+  AS+D +  DP P PRYT    NR
Sbjct: 165 GNYDPGASFDVNDQDPDPQPRYTQMNDNR 193

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

>sp|P09958|FURIN_HUMAN Furin OS=Homo sapiens GN=FURIN PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 6/89 (6%)

Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+AAWAQG TG  I  +I+DDG++  H DL 
Sbjct: 111 QEPTDPKFPQQWYLSGVTQR------DLNVKAAWAQGYTGHGIVVSILDDGIEKNHPDLA 164

Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
            NY+  AS+D +  DP P PRYT    NR
Sbjct: 165 GNYDPGASFDVNDQDPDPQPRYTQMNDNR 193

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

>sp|P23188|FURIN_MOUSE Furin OS=Mus musculus GN=Furin PE=1 SV=2

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+ AWAQG TG  I  +I+DDG++  H DL 
Sbjct: 111 QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLA 164

Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
            NY+  AS+D +  DP P PRYT    NR
Sbjct: 165 GNYDPGASFDVNDQDPDPQPRYTQMNDNR 193

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
91086241	630	PREDICTED: similar to AGAP002176-PA [Tri	0.909	0.190	0.860	2e-55
270009864	652	hypothetical protein TcasGA2_TC009181 [T	0.909	0.184	0.860	2e-55
350417414	723	PREDICTED: LOW QUALITY PROTEIN: neuroend	0.924	0.168	0.809	5e-54
13506775	634	PC2-like protein [Orconectes limosus]	0.931	0.194	0.796	6e-54
336309251	633	PC2-like protein [Penaeus monodon]	0.931	0.194	0.788	1e-53
340714129	723	PREDICTED: LOW QUALITY PROTEIN: neuroend	0.924	0.168	0.801	2e-53
380026023	724	PREDICTED: neuroendocrine convertase 2-l	0.924	0.168	0.795	5e-53
383859429	724	PREDICTED: neuroendocrine convertase 2-l	0.924	0.168	0.803	8e-53
66508837	723	PREDICTED: neuroendocrine convertase 2 i	0.924	0.168	0.795	1e-52
345480643	682	PREDICTED: neuroendocrine convertase 2-l	0.909	0.175	0.772	4e-52

>gi|91086241|ref|XP_972593.1| PREDICTED: similar to AGAP002176-PA [Tribolium castaneum]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 110/122 (90%), Gaps = 2/122 (1%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKL 66
           VH A+QQ GF RVKRGYKPLKVENLV +I  +   DP+DPYFPFQWYLKNTGQNGGKAKL
Sbjct: 92  VHTAIQQPGFIRVKRGYKPLKVENLVRNI--QPHSDPTDPYFPFQWYLKNTGQNGGKAKL 149

Query: 67  DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           DLNVEAAWAQGVTG+NITTAIMDDGVDYMH DLK NYNAKASYDFSSNDP PYPRYTDDW
Sbjct: 150 DLNVEAAWAQGVTGKNITTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDPFPYPRYTDDW 209

Query: 127 FN 128
           FN
Sbjct: 210 FN 211

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009864|gb|EFA06312.1| hypothetical protein TcasGA2_TC009181 [Tribolium castaneum]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 110/122 (90%), Gaps = 2/122 (1%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKL 66
           VH A+QQ GF RVKRGYKPLKVENLV +I  +   DP+DPYFPFQWYLKNTGQNGGKAKL
Sbjct: 114 VHTAIQQPGFIRVKRGYKPLKVENLVRNI--QPHSDPTDPYFPFQWYLKNTGQNGGKAKL 171

Query: 67  DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           DLNVEAAWAQGVTG+NITTAIMDDGVDYMH DLK NYNAKASYDFSSNDP PYPRYTDDW
Sbjct: 172 DLNVEAAWAQGVTGKNITTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDPFPYPRYTDDW 231

Query: 127 FN 128
           FN
Sbjct: 232 FN 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417414|ref|XP_003491411.1| PREDICTED: LOW QUALITY PROTEIN: neuroendocrine convertase 2-like [Bombus impatiens]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 112/126 (88%), Gaps = 4/126 (3%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE----SQDPSDPYFPFQWYLKNTGQNGG 62
           VH AVQQ GFKRVKRGYKPL V+NLVP   M +    ++DPSDP+F +QWYLKNTGQNGG
Sbjct: 178 VHTAVQQPGFKRVKRGYKPLSVDNLVPPYQMSQMNPGNRDPSDPFFQYQWYLKNTGQNGG 237

Query: 63  KAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY 122
           KAKLDLNV+AAWAQGVTG+N+TTAIMDDGVDYMH DLK NYNAKASYDFSSNDP+PYPRY
Sbjct: 238 KAKLDLNVKAAWAQGVTGKNVTTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDPYPYPRY 297

Query: 123 TDDWFN 128
           TDDWFN
Sbjct: 298 TDDWFN 303

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|13506775|gb|AAK28328.1| PC2-like protein [Orconectes limosus]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/123 (79%), Positives = 109/123 (88%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
            VH A QQ+GFKRVKRGY PLKVENLVP   ++  QDP+DPYF FQWYLKNTGQNGGK +
Sbjct: 93  HVHWAYQQAGFKRVKRGYNPLKVENLVPLHTIQSHQDPTDPYFRFQWYLKNTGQNGGKPR 152

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNVEAAWAQG TGRN+TTAIMDDG+DYMH DL+NNYNA+AS+DFSSNDP P+PRYTDD
Sbjct: 153 LDLNVEAAWAQGFTGRNVTTAIMDDGIDYMHPDLRNNYNARASWDFSSNDPFPFPRYTDD 212

Query: 126 WFN 128
           WFN
Sbjct: 213 WFN 215

Source: Orconectes limosus

Species: Orconectes limosus

Genus: Orconectes

Family: Cambaridae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|336309251|gb|AEI52301.1| PC2-like protein [Penaeus monodon]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/123 (78%), Positives = 110/123 (89%)

Query: 6   QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
           QVH A QQ GF+RVKRGYKPLKVENLVP   +   +DP+DPYF +QWYLKNTGQNGGK +
Sbjct: 93  QVHSAFQQLGFRRVKRGYKPLKVENLVPLQSIHSDRDPTDPYFDYQWYLKNTGQNGGKPR 152

Query: 66  LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           LDLNVEAAWAQG TGRN+TTAIMDDG+DYMH DL++NYNA+AS+DFSSNDP+PYPRYTDD
Sbjct: 153 LDLNVEAAWAQGFTGRNVTTAIMDDGIDYMHPDLRHNYNARASWDFSSNDPYPYPRYTDD 212

Query: 126 WFN 128
           WFN
Sbjct: 213 WFN 215

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714129|ref|XP_003395584.1| PREDICTED: LOW QUALITY PROTEIN: neuroendocrine convertase 2-like [Bombus terrestris]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/126 (80%), Positives = 111/126 (88%), Gaps = 4/126 (3%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE----SQDPSDPYFPFQWYLKNTGQNGG 62
           VH AVQQ GFKRVKRGYKPL V+NLVP   M +    ++DPSDP+F +QWYLKNTGQNGG
Sbjct: 178 VHAAVQQPGFKRVKRGYKPLSVDNLVPPYQMSQMNPGNRDPSDPFFQYQWYLKNTGQNGG 237

Query: 63  KAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY 122
           KAKLDLNV+AAWAQG TG+N+TTAIMDDGVDYMH DLK NYNAKASYDFSSNDP+PYPRY
Sbjct: 238 KAKLDLNVKAAWAQGFTGKNVTTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDPYPYPRY 297

Query: 123 TDDWFN 128
           TDDWFN
Sbjct: 298 TDDWFN 303

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026023|ref|XP_003696761.1| PREDICTED: neuroendocrine convertase 2-like [Apis florea]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 111/127 (87%), Gaps = 5/127 (3%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE-----SQDPSDPYFPFQWYLKNTGQNG 61
           VH AVQQ+GFKRVKRGYKPL V+NLVP   +K      ++DPSDPYF +QWYLKNTGQNG
Sbjct: 178 VHTAVQQAGFKRVKRGYKPLSVDNLVPLYQIKNPSNPGNRDPSDPYFQYQWYLKNTGQNG 237

Query: 62  GKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPR 121
           GK KLDLNV+AAWAQGVTG+N+TTAIMDDGVDYMH DLK NYN KASYDFSSNDP+PYPR
Sbjct: 238 GKPKLDLNVKAAWAQGVTGKNVTTAIMDDGVDYMHPDLKYNYNTKASYDFSSNDPYPYPR 297

Query: 122 YTDDWFN 128
           YTDDWFN
Sbjct: 298 YTDDWFN 304

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859429|ref|XP_003705197.1| PREDICTED: neuroendocrine convertase 2-like [Megachile rotundata]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 102/127 (80%), Positives = 110/127 (86%), Gaps = 5/127 (3%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE-----SQDPSDPYFPFQWYLKNTGQNG 61
           VH AVQQ GFKRVKRGYKPL V+NLVP   +K      ++DPSDPYF  QWYLKNTGQNG
Sbjct: 178 VHTAVQQPGFKRVKRGYKPLSVDNLVPLYQIKNPENPVNRDPSDPYFQHQWYLKNTGQNG 237

Query: 62  GKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPR 121
           GK KLDLNV+AAWAQGVTG+N+TTAIMDDGVDYMH DLK NYNAKASYDFSSNDP+PYPR
Sbjct: 238 GKPKLDLNVKAAWAQGVTGKNVTTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDPYPYPR 297

Query: 122 YTDDWFN 128
           YTDDWFN
Sbjct: 298 YTDDWFN 304

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508837|ref|XP_392366.2| PREDICTED: neuroendocrine convertase 2 isoform 1 [Apis mellifera]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 110/127 (86%), Gaps = 5/127 (3%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE-----SQDPSDPYFPFQWYLKNTGQNG 61
           VH AVQQ GFKRVKRGYKPL V+NLVP   +K      ++DPSDPYF +QWYLKNTGQNG
Sbjct: 177 VHTAVQQPGFKRVKRGYKPLSVDNLVPLYQIKNPSNPGNRDPSDPYFQYQWYLKNTGQNG 236

Query: 62  GKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPR 121
           GK KLDLNV+AAWAQGVTG+N+TTAIMDDGVDYMH DLK NYN KASYDFSSNDP+PYPR
Sbjct: 237 GKPKLDLNVKAAWAQGVTGKNVTTAIMDDGVDYMHPDLKYNYNTKASYDFSSNDPYPYPR 296

Query: 122 YTDDWFN 128
           YTDDWFN
Sbjct: 297 YTDDWFN 303

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480643|ref|XP_001600872.2| PREDICTED: neuroendocrine convertase 2-like [Nasonia vitripennis]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 109/132 (82%), Gaps = 12/132 (9%)

Query: 7   VHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKE----------SQDPSDPYFPFQWYLKN 56
           VH AVQQ GFKRVKRGYKPL VE LVP  +MK           S+DP+DPYF +QWYLKN
Sbjct: 133 VHTAVQQPGFKRVKRGYKPLSVEKLVP--LMKSEMKNPASKPASRDPTDPYFQYQWYLKN 190

Query: 57  TGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP 116
           TGQN GK KLDLNVEAAWAQG TG+N+TTAIMDDGVDYMH DLK NYNAKASYDFSSNDP
Sbjct: 191 TGQNAGKPKLDLNVEAAWAQGFTGKNVTTAIMDDGVDYMHPDLKYNYNAKASYDFSSNDP 250

Query: 117 HPYPRYTDDWFN 128
           +PYPRYTDDWFN
Sbjct: 251 YPYPRYTDDWFN 262

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0023179	654	amon "amontillado" [Drosophila	0.924	0.186	0.710	9.8e-48
WB|WBGene00001172	652	egl-3 [Caenorhabditis elegans	0.931	0.188	0.661	4.7e-43
UNIPROTKB|G5ECN9	652	egl-3 "Prohormone convertase 2	0.931	0.188	0.661	4.7e-43
UNIPROTKB|E9P883	527	egl-3 "Protein EGL-3, isoform	0.651	0.163	0.825	2.1e-38
UNIPROTKB|F1NUG0	547	PCSK2 "Uncharacterized protein	0.856	0.206	0.609	1.2e-34
UNIPROTKB|F1SBI5	637	PCSK2 "Neuroendocrine converta	0.856	0.177	0.593	1.8e-33
UNIPROTKB|Q03333	638	PCSK2 "Neuroendocrine converta	0.856	0.177	0.593	1.9e-33
UNIPROTKB|P16519	638	PCSK2 "Neuroendocrine converta	0.856	0.177	0.593	2.4e-33
UNIPROTKB|A7MBJ9	638	PCSK2 "Neuroendocrine converta	0.856	0.177	0.585	3.1e-33
UNIPROTKB|F1PKR4	638	PCSK2 "Uncharacterized protein	0.856	0.177	0.585	5.1e-33

FB|FBgn0023179 amon "amontillado" [Drosophila melanogaster (taxid:7227)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 91/128 (71%), Positives = 105/128 (82%)

Query:     7 VHQAVQQSGFKRVKRGYKPL--KVENLVPDIVMKES----QDPSDPYFPFQWYLKNTGQN 60
             VH AVQQ GFKRVKRG +P    +  +  D+ + E     ++P+DPYFP QWYLKNTGQN
Sbjct:   108 VHTAVQQPGFKRVKRGLRPAVPAIHGMKFDLKVGEGNRIDEEPTDPYFPMQWYLKNTGQN 167

Query:    61 GGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP 120
             GGK +LDLNV+AAWAQG+TG+N+TTAIMDDGVDYMH DLK NYNA+ASYDFSSNDP PYP
Sbjct:   168 GGKVRLDLNVQAAWAQGITGKNVTTAIMDDGVDYMHPDLKFNYNAEASYDFSSNDPFPYP 227

Query:   121 RYTDDWFN 128
             RYTDDWFN
Sbjct:   228 RYTDDWFN 235

GO:0008233 "peptidase activity" evidence=ISS;IDA

GO:0016486 "peptide hormone processing" evidence=ISS;IMP

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;IBA

GO:0035187 "hatching behavior" evidence=IMP

GO:0006508 "proteolysis" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0002165 "instar larval or pupal development" evidence=IMP

GO:0033500 "carbohydrate homeostasis" evidence=IMP

GO:0035180 "larval wandering behavior" evidence=IMP

GO:0005615 "extracellular space" evidence=IBA

GO:0016485 "protein processing" evidence=IBA

WB|WBGene00001172 egl-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 455 (165.2 bits), Expect = 4.7e-43, P = 4.7e-43
 Identities = 82/124 (66%), Positives = 95/124 (76%)

Query:     5 EQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKA 64
             ++V    Q  G+ R KRGY+PL+ + L           PSDP + +QWYLKNTGQ GGKA
Sbjct:    91 DEVLHVEQLKGYTRTKRGYRPLE-QRLESQFDFSAVMSPSDPLYGYQWYLKNTGQAGGKA 149

Query:    65 KLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD 124
             +LDLNVE AWA G TG+NITTAIMDDGVDYMH D+KNN+NA+ASYDFSSNDP PYPRYTD
Sbjct:   150 RLDLNVERAWAMGFTGKNITTAIMDDGVDYMHPDIKNNFNAEASYDFSSNDPFPYPRYTD 209

Query:   125 DWFN 128
             DWFN
Sbjct:   210 DWFN 213

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0061096 "negative regulation of turning behavior involved in mating" evidence=IMP

UNIPROTKB|G5ECN9 egl-3 "Prohormone convertase 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 455 (165.2 bits), Expect = 4.7e-43, P = 4.7e-43
 Identities = 82/124 (66%), Positives = 95/124 (76%)

Query:     5 EQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKA 64
             ++V    Q  G+ R KRGY+PL+ + L           PSDP + +QWYLKNTGQ GGKA
Sbjct:    91 DEVLHVEQLKGYTRTKRGYRPLE-QRLESQFDFSAVMSPSDPLYGYQWYLKNTGQAGGKA 149

Query:    65 KLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD 124
             +LDLNVE AWA G TG+NITTAIMDDGVDYMH D+KNN+NA+ASYDFSSNDP PYPRYTD
Sbjct:   150 RLDLNVERAWAMGFTGKNITTAIMDDGVDYMHPDIKNNFNAEASYDFSSNDPFPYPRYTD 209

Query:   125 DWFN 128
             DWFN
Sbjct:   210 DWFN 213

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

UNIPROTKB|E9P883 egl-3 "Protein EGL-3, isoform c" [Caenorhabditis elegans (taxid:6239)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 71/86 (82%), Positives = 78/86 (90%)

Query:    43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
             PSDP + +QWYLKNTGQ GGKA+LDLNVE AWA G TG+NITTAIMDDGVDYMH D+KNN
Sbjct:     3 PSDPLYGYQWYLKNTGQAGGKARLDLNVERAWAMGFTGKNITTAIMDDGVDYMHPDIKNN 62

Query:   103 YNAKASYDFSSNDPHPYPRYTDDWFN 128
             +NA+ASYDFSSNDP PYPRYTDDWFN
Sbjct:    63 FNAEASYDFSSNDPFPYPRYTDDWFN 88

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

UNIPROTKB|F1NUG0 PCSK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 75/123 (60%), Positives = 87/123 (70%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             QV +AVQQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct:     1 QVKKAVQQEGFSRRKRGYRDI---NDI-DINM------NDPLFTKQWYLINTGQADGTPG 50

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct:    51 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAQASYDFSSNDPYPYPRYTDD 110

Query:   126 WFN 128
             WFN
Sbjct:   111 WFN 113

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0034230 "enkephalin processing" evidence=IEA

UNIPROTKB|F1SBI5 PCSK2 "Neuroendocrine convertase 2" [Sus scrofa (taxid:9823)]

 Score = 370 (135.3 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 73/123 (59%), Positives = 87/123 (70%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             +V +A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct:    94 RVKRALQQEGFDRKKRGYRDI---NEI-DINM------NDPLFTKQWYLINTGQADGTPG 143

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct:   144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query:   126 WFN 128
             WFN
Sbjct:   204 WFN 206

GO:0034230 "enkephalin processing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q03333 PCSK2 "Neuroendocrine convertase 2" [Sus scrofa (taxid:9823)]

 Score = 370 (135.3 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 73/123 (59%), Positives = 87/123 (70%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             +V +A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct:    94 RVKRALQQEGFDRKKRGYRDI---NEI-DINM------NDPLFTKQWYLINTGQADGTPG 143

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct:   144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query:   126 WFN 128
             WFN
Sbjct:   204 WFN 206

GO:0030133 "transport vesicle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|P16519 PCSK2 "Neuroendocrine convertase 2" [Homo sapiens (taxid:9606)]

 Score = 369 (135.0 bits), Expect = 2.4e-33, P = 2.4e-33
 Identities = 73/123 (59%), Positives = 86/123 (69%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             +V  A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct:    94 RVKMALQQEGFDRKKRGYRDI---NEI-DINM------NDPLFTKQWYLINTGQADGTPG 143

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct:   144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query:   126 WFN 128
             WFN
Sbjct:   204 WFN 206

GO:0007399 "nervous system development" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030141 "secretory granule" evidence=TAS

GO:0034230 "enkephalin processing" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0004252 "serine-type endopeptidase activity" evidence=IDA

GO:0006508 "proteolysis" evidence=IDA

GO:0030070 "insulin processing" evidence=IDA

GO:0034231 "islet amyloid polypeptide processing" evidence=ISS

GO:0005615 "extracellular space" evidence=IDA

UNIPROTKB|A7MBJ9 PCSK2 "Neuroendocrine convertase 2" [Bos taurus (taxid:9913)]

 Score = 368 (134.6 bits), Expect = 3.1e-33, P = 3.1e-33
 Identities = 72/123 (58%), Positives = 87/123 (70%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             +V +A+QQ GF R KRGY+ +   N + DI      + +DP F  QWYL NTGQ  G   
Sbjct:    94 RVKRALQQEGFNRKKRGYRDI---NEI-DI------NVNDPLFTKQWYLINTGQADGTPG 143

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFSSNDP+PYPRYTDD
Sbjct:   144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSSNDPYPYPRYTDD 203

Query:   126 WFN 128
             WFN
Sbjct:   204 WFN 206

GO:0034230 "enkephalin processing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1PKR4 PCSK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 5.1e-33, P = 5.1e-33
 Identities = 72/123 (58%), Positives = 85/123 (69%)

Query:     6 QVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAK 65
             +V  A+QQ GF R KRGY+ +   N + DI M      +DP F  QWYL NTGQ  G   
Sbjct:    94 RVKMALQQEGFNRKKRGYRDI---NEI-DINM------NDPLFTKQWYLINTGQADGTPG 143

Query:    66 LDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
             LDLNV  AW  G TG+ +T  IMDDG+DY+H DL +NYNA+ASYDFS NDP+PYPRYTDD
Sbjct:   144 LDLNVAEAWELGYTGKGVTIGIMDDGIDYLHPDLASNYNAEASYDFSGNDPYPYPRYTDD 203

Query:   126 WFN 128
             WFN
Sbjct:   204 WFN 206

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5REC2	NEC2_PONAB	3, ., 4, ., 2, 1, ., 9, 4	0.5853	0.8560	0.1771	yes	N/A
Q03333	NEC2_PIG	3, ., 4, ., 2, 1, ., 9, 4	0.5934	0.8560	0.1771	yes	N/A
P21661	NEC2_MOUSE	3, ., 4, ., 2, 1, ., 9, 4	0.5772	0.8560	0.1773	yes	N/A
P28841	NEC2_RAT	3, ., 4, ., 2, 1, ., 9, 4	0.5772	0.8560	0.1773	yes	N/A
Q9GLR0	NEC2_BOVIN	3, ., 4, ., 2, 1, ., 9, 4	0.5528	0.8560	0.1771	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
cd04059	297	cd04059, Peptidases_S8_Protein_convertases_Kexins_	3e-41
cd07484	260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	1e-08
cd07485	273	cd07485, Peptidases_S8_Fervidolysin_like, Peptidas	2e-05
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	6e-05
COG1404	508	COG1404, AprE, Subtilisin-like serine proteases [P	1e-04
cd07489	312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	8e-04
cd07491	247	cd07491, Peptidases_S8_7, Peptidase S8 family doma	0.001
cd07474	295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	0.003

>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases

 Score =  138 bits (349), Expect = 3e-41
 Identities = 52/85 (61%), Positives = 65/85 (76%)

Query: 43  PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
           P+DP FP+QWYLKNTGQ GG   LDLNV  AW QG+TG+ +T A++DDG++  H DLK+N
Sbjct: 1   PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDN 60

Query: 103 YNAKASYDFSSNDPHPYPRYTDDWF 127
           Y+ +ASYDF+ NDP P PRY DD  
Sbjct: 61  YDPEASYDFNDNDPDPTPRYDDDNS 85

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297

>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 43  PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
           P+DPY+ +QW L   G              AW     G  +T A++D GVD  H DL   
Sbjct: 2   PNDPYYSYQWNLDQIG-----------APKAWDI-TGGSGVTVAVVDTGVDPTHPDLLKV 49

Query: 103 YNAKASYDFSSNDPHP 118
                 YDF  ND   
Sbjct: 50  KFVLG-YDFVDNDSDA 64

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260

>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 72  AAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           AAW  G  G  I  A++D GVD  H DL+ N +    YD + N  +  P   D 
Sbjct: 1   AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-YDPAVNGYNFVPNVGDI 53

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 84  TTAIMDDGVDYMHMDLKNNYNAKA---SYDFSSNDPHPYPRYTDDWFN 128
           T  ++D G+D  H DL   Y   A    YDF  ND  P P   DD   
Sbjct: 1   TVGVLDTGIDVNHPDLSGRYIGLAYRNGYDFVDND--PDPTPDDDNNG 46

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 31  LVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLD--LNVEAAWAQ--GVTGRNITTA 86
           LV  +      D             ++       +    ++V A  A   G+TG+ +T A
Sbjct: 88  LVAQVARLRLVDAGPVVAVADTVTTDSAGVKPLPRGPGAISVGALVANGAGLTGKGVTVA 147

Query: 87  IMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           ++D GVD  H DL    +A A  DF   D  P P + DD
Sbjct: 148 VIDTGVDASHPDLAG--SAVAGGDFVDGD--PEPPFLDD 182

Length = 508

>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 75  AQGVTGRNITTAIMDDGVDYMHMDLKNNYNA----KASYDF------SSNDPHP 118
           A+G+TG+ +  A++D G+DY H  L   +         YDF       +N P P
Sbjct: 7   AEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVP 60

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312

>gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 79  TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP---HPY 119
             + I  A++DDGVD +  DL+       S+     D     PY
Sbjct: 1   LLKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPY 44

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247

>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 80  GRNITTAIMDDGVDYMHMDLKN----NYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132
           G+ +  A++D G+DY H DL      N   K  YDF  +D  P             +
Sbjct: 1   GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG3526|consensus	629		99.97
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.85
PTZ00262	639	subtilisin-like protease; Provisional	99.67
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	99.59
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	99.3
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	99.17
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	99.16
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	99.09
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	99.03
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	99.02
KOG3525|consensus	431		99.0
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	98.97
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	98.97
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	98.95
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	98.9
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	98.85
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	98.84
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	98.8
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	98.8
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	98.78
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	98.76
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	98.75
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	98.74
cd07478	455	Peptidases_S8_CspA-like Peptidase S8 family domain	98.73
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	98.72
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	98.66
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	98.6
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	98.59
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	98.59
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	98.58
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	98.49
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	98.44
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	98.43
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	98.21
COG1404	508	AprE Subtilisin-like serine proteases [Posttransla	98.13
KOG4266|consensus	1033		97.89
KOG1153|consensus	501		97.76
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	97.56
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	97.41
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	97.32
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	97.27
KOG1114|consensus	1304		92.04

>KOG3526|consensus

Probab=99.97  E-value=4.7e-31  Score=214.70  Aligned_cols=122  Identities=66%  Similarity=1.114  Sum_probs=114.5

Q ss_pred             CCCCCceeEEEeccceeeecccCcCCcccccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCC
Q psy357            1 MVHMEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTG   80 (132)
Q Consensus         1 ~~~~~~v~~~~~q~~~~r~kR~~~~~~~~~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g   80 (132)
                      |..+|+|+-++||..+.|.||+++++..          ....-+||+|.+||||.|+||.+|+++.|+|+.+||.+|++|
T Consensus        91 l~~dp~v~~a~qq~gf~r~krgyrp~~~----------fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tg  160 (629)
T KOG3526|consen   91 LHNDPEVKMALQQEGFDRKKRGYRPINE----------FDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTG  160 (629)
T ss_pred             hccChhHhhhhhccccchhhccCCchhh----------hccccCCcccceeeeeecccccCCcccccccHHHHHhhcccC
Confidence            4578999999999999999999988753          223457999999999999999999999999999999999999


Q ss_pred             CceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           81 RNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        81 ~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      |+|++||+|+|||+.||||+.|+...+||||.++|+-|+|+|.++..|+|||
T Consensus       161 knvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgt  212 (629)
T KOG3526|consen  161 KNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGT  212 (629)
T ss_pred             CCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCc
Confidence            9999999999999999999999999999999999999999999999999998

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=99.85  E-value=1.6e-21  Score=153.34  Aligned_cols=88  Identities=59%  Similarity=1.108  Sum_probs=80.2

Q ss_pred             CCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC
Q psy357           43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY  122 (132)
Q Consensus        43 p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~  122 (132)
                      ||||++.+||+|++.++.+++.+.+|++..+|+.+++|++|+|||||+||+..||||++++....+|+|..++.++.|..
T Consensus         1 ~~dp~~~~qw~l~~~~~~~~~~~~~~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (297)
T cd04059           1 PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRY   80 (297)
T ss_pred             CCCcccccccccccCCCCCCCCCCCcccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999987778999998877776654


Q ss_pred             CCCCCCCCCC
Q psy357          123 TDDWFNRWNN  132 (132)
Q Consensus       123 ~~~~~~~HGT  132 (132)
                        .+.++|||
T Consensus        81 --~~~~gHGT   88 (297)
T cd04059          81 --DDDNSHGT   88 (297)
T ss_pred             --ccccccCc
Confidence              24569998

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>PTZ00262 subtilisin-like protease; Provisional

Probab=99.67  E-value=7.1e-17  Score=139.29  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCcccccccCCCCCCCccccCChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhcccCC------------
Q psy357           40 SQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKNNYNA------------  105 (132)
Q Consensus        40 ~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~~~~~------------  105 (132)
                      .+.+|||++..||+|..           ++++++|+.  +.+|++|+|||||||||++||||+++++.            
T Consensus       284 ~~~~ND~~~~~qWgLd~-----------i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiD  352 (639)
T PTZ00262        284 KYQFNDEGRNLQWGLDL-----------TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGID  352 (639)
T ss_pred             ccccCCCCcccCcCcch-----------hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccc
Confidence            46799999999999986           778999985  45789999999999999999999988743            


Q ss_pred             ---------CCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357          106 ---------KASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus       106 ---------~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                               ..||||++++.+|+      +.++|||
T Consensus       353 dD~nG~vdd~~G~nfVd~~~~P~------D~~GHGT  382 (639)
T PTZ00262        353 DDNNGNVDDEYGANFVNNDGGPM------DDNYHGT  382 (639)
T ss_pred             cccCCcccccccccccCCCCCCC------CCCCcch
Confidence                     24678887776663      4579998

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=99.59  E-value=2.2e-15  Score=116.67  Aligned_cols=72  Identities=35%  Similarity=0.631  Sum_probs=60.8

Q ss_pred             CCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCC
Q psy357           42 DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPR  121 (132)
Q Consensus        42 ~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~  121 (132)
                      +|+||+|.+||+|..           ++++.+|..+ +|++|+|||||+||+.+||+|... ....+++|.+.+.++.  
T Consensus         1 ~~~~~~~~~~w~~~~-----------~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-~~~~~~~~~~~~~~~~--   65 (260)
T cd07484           1 TPNDPYYSYQWNLDQ-----------IGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-KFVLGYDFVDNDSDAM--   65 (260)
T ss_pred             CCCCcCcccCCCccc-----------cChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-CcccceeccCCCCCCC--
Confidence            589999999999986           8899999998 999999999999999999998554 3457889987765532  


Q ss_pred             CCCCCCCCCCC
Q psy357          122 YTDDWFNRWNN  132 (132)
Q Consensus       122 ~~~~~~~~HGT  132 (132)
                          +..+|||
T Consensus        66 ----d~~~HGT   72 (260)
T cd07484          66 ----DDNGHGT   72 (260)
T ss_pred             ----CCCCcHH
Confidence                3468998

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=99.30  E-value=3.5e-12  Score=101.53  Aligned_cols=63  Identities=29%  Similarity=0.530  Sum_probs=47.6

Q ss_pred             hHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCC----CCceeccCCCC----CCCCCCCCCCCCCCCC
Q psy357           70 VEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNA----KASYDFSSNDP----HPYPRYTDDWFNRWNN  132 (132)
Q Consensus        70 ~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~----~~~~df~~~d~----~p~p~~~~~~~~~HGT  132 (132)
                      +..+|+.+++|++|+|||||+||+++||+|++++..    ..+|||+.++.    .+.+.....+.++|||
T Consensus         2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT   72 (312)
T cd07489           2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGT   72 (312)
T ss_pred             hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHH
Confidence            688999999999999999999999999999987643    45678875542    2222222234579998

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=99.17  E-value=2.1e-11  Score=97.95  Aligned_cols=58  Identities=22%  Similarity=0.434  Sum_probs=46.1

Q ss_pred             HHHhcCC-CCCceEEEEeeCCCCCCChhhhcccCCC---------------------------CceeccCCCCCCCCCCC
Q psy357           72 AAWAQGV-TGRNITTAIMDDGVDYMHMDLKNNYNAK---------------------------ASYDFSSNDPHPYPRYT  123 (132)
Q Consensus        72 ~aw~~~~-~g~~V~VaViDtGid~~HpDL~~~~~~~---------------------------~~~df~~~d~~p~p~~~  123 (132)
                      ++|+.+. +|++|+||||||||+++||+|.++....                           .+|||++++.++.+   
T Consensus         1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (346)
T cd07475           1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILD---   77 (346)
T ss_pred             ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCC---
Confidence            3799876 8999999999999999999998765443                           36888888777654   


Q ss_pred             CCCCCCCCC
Q psy357          124 DDWFNRWNN  132 (132)
Q Consensus       124 ~~~~~~HGT  132 (132)
                      ..+..+|||
T Consensus        78 ~~~~~~HGT   86 (346)
T cd07475          78 EDDGSSHGM   86 (346)
T ss_pred             CCCCCCcHH
Confidence            234579998

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=99.16  E-value=1.7e-11  Score=94.73  Aligned_cols=66  Identities=23%  Similarity=0.411  Sum_probs=49.4

Q ss_pred             cccccCCCCCCCccccCChHH-HHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCC
Q psy357           52 WYLKNTGQNGGKAKLDLNVEA-AWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRW  130 (132)
Q Consensus        52 W~L~~~g~~~~~~g~~i~~~~-aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~H  130 (132)
                      |+|..+.+..      ..... +|..+++|++|+|||||+||+.+||+|+++..  .+++|...+.       ..+.++|
T Consensus         1 w~l~~~~~~~------~~~~~~~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~--~~~~~~~~~~-------~~d~~~H   65 (255)
T cd04077           1 WGLDRISQRD------LPLDGTYYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAI--WGADFVGGDP-------DSDCNGH   65 (255)
T ss_pred             CCccccCCCC------CCCCCceEecCCCCCCcEEEEEcCCCCCCChhhhCCee--eeeecCCCCC-------CCCCCcc
Confidence            8887654421      22233 67778999999999999999999999999864  5788877543       2345799


Q ss_pred             CC
Q psy357          131 NN  132 (132)
Q Consensus       131 GT  132 (132)
                      ||
T Consensus        66 GT   67 (255)
T cd04077          66 GT   67 (255)
T ss_pred             HH
Confidence            98

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=99.09  E-value=7.6e-11  Score=92.23  Aligned_cols=60  Identities=30%  Similarity=0.331  Sum_probs=41.7

Q ss_pred             HHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC-----CCCCCCCCCCCCC
Q psy357           72 AAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY-----PRYTDDWFNRWNN  132 (132)
Q Consensus        72 ~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~-----p~~~~~~~~~HGT  132 (132)
                      ++|..+++|++|+||||||||+.+||+|+++.. ..+|+...+...+.     +.....+.++|||
T Consensus         1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT   65 (273)
T cd07485           1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGD-GDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGT   65 (273)
T ss_pred             CccccccCCCCcEEEEEeCCCCCCChhhccCCC-CCCcccccCCcccccccCCcCCCCCCCCCCHH
Confidence            479999999999999999999999999999832 23444433333222     0111234579998

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=99.03  E-value=3e-10  Score=89.93  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             CChHHHHhcCC-CCCceEEEEeeCCCCCCChhhhcccC
Q psy357           68 LNVEAAWAQGV-TGRNITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        68 i~~~~aw~~~~-~g~~V~VaViDtGid~~HpDL~~~~~  104 (132)
                      |++.+||+... .|++|+|+|||+||+.+||||++++.
T Consensus         2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~   39 (277)
T cd04843           2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI   39 (277)
T ss_pred             CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc
Confidence            89999999853 48999999999999999999999864

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=99.02  E-value=2.5e-10  Score=90.55  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=22.2

Q ss_pred             CceEEEEeeCCCCCCChhhhcccC
Q psy357           81 RNITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        81 ~~V~VaViDtGid~~HpDL~~~~~  104 (132)
                      ++|+|||||||||++||||+++++
T Consensus         1 ~~V~VaviDtGid~~Hpdl~~~~~   24 (291)
T cd07483           1 KTVIVAVLDSGVDIDHEDLKGKLW   24 (291)
T ss_pred             CceEEEEEeCCCCCCChhhhhhhh
Confidence            589999999999999999999875

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>KOG3525|consensus

Probab=99.00  E-value=4.3e-10  Score=94.23  Aligned_cols=84  Identities=38%  Similarity=0.692  Sum_probs=75.4

Q ss_pred             CCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCC
Q psy357           45 DPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD  124 (132)
Q Consensus        45 Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~  124 (132)
                      ||++..||||.+.+    ..+.++++..+|..+++|++++|+|+|+|+...||++..++.+..+|+++.++.+|.|..+.
T Consensus         1 ~~~~~~~w~l~~~~----~~~~d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~   76 (431)
T KOG3525|consen    1 DPMSIHMWYLNAQE----FPGSDLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDG   76 (431)
T ss_pred             CCCccceEEecCCc----cccccceeeeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCC
Confidence            68899999997643    34578999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCCCCCCC
Q psy357          125 DWFNRWNN  132 (132)
Q Consensus       125 ~~~~~HGT  132 (132)
                      ...+.|||
T Consensus        77 ~~~~~~g~   84 (431)
T KOG3525|consen   77 TNENKHGT   84 (431)
T ss_pred             CCccccCC
Confidence            55678886

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=98.97  E-value=3.4e-10  Score=88.34  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=37.1

Q ss_pred             HhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           74 WAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        74 w~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      |+++++|++|+|||||+||+..||||++..   ...+|.+..       ...+..+|||
T Consensus         1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~---~~~~~~~~~-------~~~d~~gHGT   49 (255)
T cd07479           1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK---ERTNWTNEK-------TLDDGLGHGT   49 (255)
T ss_pred             CCCCCCCCCCEEEEEeCCCCCCCcchhccc---cccccCCCC-------CCCCCCCcHH
Confidence            888999999999999999999999998643   344554322       1124568998

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=98.97  E-value=5.4e-10  Score=89.92  Aligned_cols=24  Identities=46%  Similarity=0.671  Sum_probs=22.3

Q ss_pred             CCceEEEEeeCCCCCCChhhhccc
Q psy357           80 GRNITTAIMDDGVDYMHMDLKNNY  103 (132)
Q Consensus        80 g~~V~VaViDtGid~~HpDL~~~~  103 (132)
                      |++|+|||||||||.+||||+++.
T Consensus         1 G~gV~VaViDTGid~~HPdl~~~~   24 (311)
T cd07497           1 GEGVVIAIVDTGVDYSHPDLDIYG   24 (311)
T ss_pred             CCCeEEEEEeCCcCCCChhHhccc
Confidence            789999999999999999998764

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=98.95  E-value=6.3e-10  Score=88.48  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             HHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357           73 AWAQGVTGRNITTAIMDDGVDYMHMDLKNN  102 (132)
Q Consensus        73 aw~~~~~g~~V~VaViDtGid~~HpDL~~~  102 (132)
                      +|..+++|++|+||||||||++.||+|++.
T Consensus        22 ~~~~~~~G~gv~VaViDtGid~~hp~f~~~   51 (307)
T cd04852          22 LLGAANAGEGIIIGVLDTGIWPEHPSFADV   51 (307)
T ss_pred             cccccCCCCccEEEEEeCCCCCCCcCcccC
Confidence            344588999999999999999999999764

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=98.90  E-value=1.1e-09  Score=85.28  Aligned_cols=51  Identities=22%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             CCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC-CCCCCCCCCC
Q psy357           80 GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY-TDDWFNRWNN  132 (132)
Q Consensus        80 g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~-~~~~~~~HGT  132 (132)
                      +++|+|||||||||.+||||++++..  +++|...+.++.... ...+.++|||
T Consensus         2 ~~~V~VaVIDsGvd~~hpdl~~~i~~--~~~~~~~~~~~~~~~~~~~d~~gHGT   53 (247)
T cd07491           2 LKRIKVALIDDGVDILDSDLQGKIIG--GKSFSPYEGDGNKVSPYYVSADGHGT   53 (247)
T ss_pred             CCCCEEEEECCCcCCCchhhcccccc--CCCCCCCCCCcccCCCCCCCCCCcHH
Confidence            68999999999999999999999754  566665433221111 1124579998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=98.85  E-value=4.4e-09  Score=83.97  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             cCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhc
Q psy357           67 DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        67 ~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      .|++..+|+.+++|++|+||||||||+..|| |+.
T Consensus         7 ~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~   40 (298)
T cd07494           7 LLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FES   40 (298)
T ss_pred             hcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhc
Confidence            4889999999999999999999999999998 554

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=98.84  E-value=2.3e-09  Score=84.96  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             cCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           76 QGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        76 ~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      .+++|++|+|||||+||+.+||||+++..  ..++|.+...       ..+.++|||
T Consensus         3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~--~~~~~~~~~~-------~~d~~gHGT   50 (297)
T cd07480           3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI--TTKSFVGGED-------VQDGHGHGT   50 (297)
T ss_pred             CCCCCCCCEEEEEcCCCCCCChhhcCCcc--cCcccCCCCC-------CCCCCCcHH
Confidence            46899999999999999999999998864  4667765432       124579998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=98.80  E-value=3.6e-09  Score=83.29  Aligned_cols=31  Identities=32%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             HHhcCCCCCceEEEEeeCCCCCCChhhhccc
Q psy357           73 AWAQGVTGRNITTAIMDDGVDYMHMDLKNNY  103 (132)
Q Consensus        73 aw~~~~~g~~V~VaViDtGid~~HpDL~~~~  103 (132)
                      +|..+++|++|+|||||+||+.+||+|+++.
T Consensus         2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~   32 (267)
T cd07476           2 LFAFGGGDPRITIAILDGPVDRTHPCFRGAN   32 (267)
T ss_pred             ceeccCCCCCeEEEEeCCCcCCCChhhCCCc
Confidence            6999999999999999999999999999853

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=98.80  E-value=4.3e-09  Score=82.61  Aligned_cols=53  Identities=28%  Similarity=0.504  Sum_probs=39.1

Q ss_pred             CCceEEEEeeCCCCCCChhhhcc----cCCCCceeccCCCCCCCCCCC---------CCCCCCCCC
Q psy357           80 GRNITTAIMDDGVDYMHMDLKNN----YNAKASYDFSSNDPHPYPRYT---------DDWFNRWNN  132 (132)
Q Consensus        80 g~~V~VaViDtGid~~HpDL~~~----~~~~~~~df~~~d~~p~p~~~---------~~~~~~HGT  132 (132)
                      |++|+|||||+||+++||+|++.    .....+|+|.....++.+...         ..+.++|||
T Consensus         1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT   66 (295)
T cd07474           1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGT   66 (295)
T ss_pred             CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHH
Confidence            79999999999999999999832    122468999887666554222         124679998

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=98.78  E-value=4.7e-09  Score=82.17  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             cCCCCCceEEEEeeCCCCCCChhhhccc
Q psy357           76 QGVTGRNITTAIMDDGVDYMHMDLKNNY  103 (132)
Q Consensus        76 ~~~~g~~V~VaViDtGid~~HpDL~~~~  103 (132)
                      ++++|++|+|||||+||+++||||++..
T Consensus         2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~   29 (293)
T cd04842           2 LGLTGKGQIVGVADTGLDTNHCFFYDPN   29 (293)
T ss_pred             CCcCCcCCEEEEEecCCCCCCCcccCCC
Confidence            5789999999999999999999998753

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=98.76  E-value=5.5e-09  Score=81.17  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=36.9

Q ss_pred             ceEEEEeeCCCCCCChhhh-----cccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           82 NITTAIMDDGVDYMHMDLK-----NNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~-----~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      ||+||||||||+.+||+|+     .+.....++||+++..++     ..+.++|||
T Consensus         1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~HGT   51 (261)
T cd07493           1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNNT-----NYTDDDHGT   51 (261)
T ss_pred             CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCCC-----CCCCCCchh
Confidence            6899999999999999995     445556799999887655     124579998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=98.75  E-value=7.5e-09  Score=79.80  Aligned_cols=24  Identities=46%  Similarity=0.764  Sum_probs=22.3

Q ss_pred             CceEEEEeeCCCCCCChhhhcccC
Q psy357           81 RNITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        81 ~~V~VaViDtGid~~HpDL~~~~~  104 (132)
                      ++|+|||||+||+++||+|+++++
T Consensus         2 ~~v~V~iiDtGid~~h~~l~~~~~   25 (259)
T cd07473           2 GDVVVAVIDTGVDYNHPDLKDNMW   25 (259)
T ss_pred             CCCEEEEEeCCCCCCChhhccccc
Confidence            689999999999999999999765

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=98.74  E-value=1.1e-08  Score=79.73  Aligned_cols=25  Identities=48%  Similarity=0.786  Sum_probs=23.1

Q ss_pred             CCceEEEEeeCCCCCCChhhhcccC
Q psy357           80 GRNITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        80 g~~V~VaViDtGid~~HpDL~~~~~  104 (132)
                      |++|+|||||+||+++||+|++++.
T Consensus         1 G~GV~VaViDsGi~~~hp~l~~~~~   25 (264)
T cd07481           1 GTGIVVANIDTGVDWTHPALKNKYR   25 (264)
T ss_pred             CCCcEEEEEeCCCCCCChhHhhccc
Confidence            7999999999999999999999753

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins

Probab=98.73  E-value=8.2e-09  Score=86.96  Aligned_cols=24  Identities=38%  Similarity=0.934  Sum_probs=22.4

Q ss_pred             CCCCceEEEEeeCCCCCCChhhhc
Q psy357           78 VTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        78 ~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      ++|++|+|||||||||+.||||+.
T Consensus         1 ltG~GV~VaVIDtGId~~hp~F~~   24 (455)
T cd07478           1 LTGKGVLVGIIDTGIDYLHPEFRN   24 (455)
T ss_pred             CCCCceEEEEEECCCCCCCHHHcc
Confidence            479999999999999999999984

GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=98.72  E-value=9.5e-09  Score=80.85  Aligned_cols=31  Identities=35%  Similarity=0.605  Sum_probs=27.5

Q ss_pred             ceEEEEeeCCCCCCChhhhcccCCCCceeccCC
Q psy357           82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSN  114 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~  114 (132)
                      +|+||||||||+.+||+|++++.  .+|||+.+
T Consensus         1 gV~VaviDtGi~~~Hp~l~~~~~--~g~d~~~~   31 (285)
T cd07496           1 GVVVAVLDTGVLFHHPDLAGVLL--PGYDFISD   31 (285)
T ss_pred             CCEEEEecCCCCCCCcchhhccc--cCcccccC
Confidence            68999999999999999999874  58999754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=98.66  E-value=2.1e-08  Score=76.02  Aligned_cols=48  Identities=19%  Similarity=0.043  Sum_probs=31.1

Q ss_pred             ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +|+|||||+||+++||+|++++..  .++|..+.... ......+.++|||
T Consensus         1 gV~VaViDsGi~~~h~~l~~~~~~--~~~~~~~~~~~-~~~~~~d~~gHGT   48 (222)
T cd07492           1 GVRVAVIDSGVDTDHPDLGNLALD--GEVTIDLEIIV-VSAEGGDKDGHGT   48 (222)
T ss_pred             CCEEEEEeCCCCCCChhhhccccc--ccccccccccc-CCCCCCCCCCcHH
Confidence            689999999999999999998754  33332211110 0111234679998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=98.60  E-value=4.4e-08  Score=75.34  Aligned_cols=47  Identities=26%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      ||+|||||+||+.+||||.+++..  ..+|..+...+.+  ...+.++|||
T Consensus         1 GV~VaviDsGv~~~hp~l~~~~~~--~~~~~~~~~~~~~--~~~d~~~HGT   47 (254)
T cd07490           1 GVTVAVLDTGVDADHPDLAGRVAQ--WADFDENRRISAT--EVFDAGGHGT   47 (254)
T ss_pred             CCEEEEEeCCCCCCCcchhcccCC--ceeccCCCCCCCC--CCCCCCCcHH
Confidence            699999999999999999998743  3445432211111  1234579998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=98.59  E-value=4.1e-08  Score=75.14  Aligned_cols=50  Identities=14%  Similarity=0.268  Sum_probs=35.7

Q ss_pred             CCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        79 ~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +|++|+|||||+||+.+||+|++.+.....+.+..+...+    ...+.++|||
T Consensus         1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~HGT   50 (267)
T cd04848           1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYA----SNGDGDSHGT   50 (267)
T ss_pred             CCCceEEEEEeCCCCCCCccccCcccccccccccccccCC----CCCCCCChHH
Confidence            5899999999999999999999998654444444332111    1124579998

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=98.59  E-value=4.2e-08  Score=75.52  Aligned_cols=48  Identities=29%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           80 GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        80 g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      |++|+|||||+||+..||+|.++...  .+++.....   +.....+.++|||
T Consensus         1 G~gv~VaviDsGv~~~h~~l~~~~~~--~~~~~~~~~---~~~~~~d~~~HGT   48 (264)
T cd07487           1 GKGITVAVLDTGIDAPHPDFDGRIIR--FADFVNTVN---GRTTPYDDNGHGT   48 (264)
T ss_pred             CCCcEEEEEeCCCCCCCccccccccc--ccccccccc---CCCCCCCCCCchH
Confidence            79999999999999999999998753  444443211   1111224568998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=98.58  E-value=4.3e-08  Score=74.99  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=34.6

Q ss_pred             eEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           83 ITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        83 V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      |+|||||+||+.+||+|+.+.....+|+|...+..+      .+.++|||
T Consensus         1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~------~~~~~HGT   44 (242)
T cd07498           1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPT------SDIDGHGT   44 (242)
T ss_pred             CEEEEecCCCCCCChhhccCcCccCCccccCCCCCC------CCCCCCHH
Confidence            789999999999999999965556788887655421      24569998

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=98.49  E-value=1.5e-07  Score=73.68  Aligned_cols=24  Identities=42%  Similarity=0.686  Sum_probs=21.4

Q ss_pred             ceEEEEeeCCCCCCChhhhcccCC
Q psy357           82 NITTAIMDDGVDYMHMDLKNNYNA  105 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~~~~~~  105 (132)
                      +|+||||||||+.+||+|++++..
T Consensus         1 ~V~VaviDtGi~~~hp~l~~~~~~   24 (294)
T cd07482           1 KVTVAVIDSGIDPDHPDLKNSISS   24 (294)
T ss_pred             CcEEEEEeCCCCCCChhHhhcccc
Confidence            589999999999999999987643

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=98.44  E-value=1.6e-07  Score=70.93  Aligned_cols=44  Identities=27%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           82 NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +|+|||||+||+.+||+|+.++.  .+++|......     ...+..+|||
T Consensus         1 gv~V~iiDsGv~~~h~~l~~~~~--~~~~~~~~~~~-----~~~~~~~HGT   44 (229)
T cd07477           1 GVKVAVIDTGIDSSHPDLKLNIV--GGANFTGDDNN-----DYQDGNGHGT   44 (229)
T ss_pred             CCEEEEEcCCCCCCChhHhcccc--CcccccCCCCC-----CCCCCCCCHH
Confidence            68999999999999999999874  47777776431     1124568998

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=98.43  E-value=1.3e-07  Score=74.86  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=18.9

Q ss_pred             CCCCCceEEEEeeCCCCCCCh
Q psy357           77 GVTGRNITTAIMDDGVDYMHM   97 (132)
Q Consensus        77 ~~~g~~V~VaViDtGid~~Hp   97 (132)
                      +++|++|+||||||||+..||
T Consensus         1 g~tG~gv~vaviDtGvd~~~~   21 (275)
T cd05562           1 GVDGTGIKIGVISDGFDGLGD   21 (275)
T ss_pred             CCCCCceEEEEEeCCcccccc
Confidence            579999999999999999655

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=98.21  E-value=5.2e-07  Score=69.85  Aligned_cols=46  Identities=30%  Similarity=0.550  Sum_probs=34.2

Q ss_pred             EEEEeeCCCCCCChhhh-cccCCC---CceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           84 TTAIMDDGVDYMHMDLK-NNYNAK---ASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        84 ~VaViDtGid~~HpDL~-~~~~~~---~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +|||||+||+.+||+|+ +++...   .+|+|.++.....+   ..+.++|||
T Consensus         1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~HGT   50 (282)
T PF00082_consen    1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSP---SDDDNGHGT   50 (282)
T ss_dssp             EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTS---SSTSSSHHH
T ss_pred             CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCc---cccCCCccc
Confidence            69999999999999999 776533   38999987632222   234568997

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=4.5e-06  Score=67.88  Aligned_cols=59  Identities=37%  Similarity=0.466  Sum_probs=47.2

Q ss_pred             CChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           68 LNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        68 i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +.....|..  +++|++|+|+|||+||+..||+|..+...  .++|+..+..+    ...+.++|||
T Consensus       127 ~~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~--~~~~~~~~~~~----~~~d~~~hGt  187 (508)
T COG1404         127 ISVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA--GGDFVDGDPEP----PFLDDNGHGT  187 (508)
T ss_pred             cccccccccccCCCCCCeEEEEeccCCCCCChhhhccccc--ccccccCCCCC----CCCCCCCCcc
Confidence            566778886  88999999999999999999999998743  48888877664    1124578998

>KOG4266|consensus

Probab=97.89  E-value=1.2e-05  Score=70.03  Aligned_cols=36  Identities=31%  Similarity=0.569  Sum_probs=33.1

Q ss_pred             cCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357           67 DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN  102 (132)
Q Consensus        67 ~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~  102 (132)
                      .+.++-+|++|++|++|+|||.|||+..+||-|++-
T Consensus       187 ~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv  222 (1033)
T KOG4266|consen  187 MLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV  222 (1033)
T ss_pred             HhchhhHHhccccCCceEEEEeecccccCCccccch
Confidence            467889999999999999999999999999999864

>KOG1153|consensus

Probab=97.76  E-value=2e-05  Score=66.25  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=34.6

Q ss_pred             CCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        79 ~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      .|++|+.-|+||||++.||||+++...  |-++..++.       +.|+|||||
T Consensus       217 aG~gvtaYv~DTGVni~H~dFegRa~w--Ga~i~~~~~-------~~D~nGHGT  261 (501)
T KOG1153|consen  217 AGKGVTAYVLDTGVNIEHPDFEGRAIW--GATIPPKDG-------DEDCNGHGT  261 (501)
T ss_pred             cCCCeEEEEecccccccccccccceec--ccccCCCCc-------ccccCCCcc
Confidence            699999999999999999999998632  334443322       236799998

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=97.56  E-value=8.5e-05  Score=55.02  Aligned_cols=45  Identities=31%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             eEEEEeeCCCCCCChhh---hcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           83 ITTAIMDDGVDYMHMDL---KNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        83 V~VaViDtGid~~HpDL---~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      |+|||||+||+.+||+|   ....  ..++++......+.   ...+..+|||
T Consensus         1 v~VaiiD~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~HGt   48 (241)
T cd00306           1 VTVAVIDTGVDPDHPDLDGLFGGG--DGGNDDDDNENGPT---DPDDGNGHGT   48 (241)
T ss_pred             CEEEEEeCCCCCCCcchhccccCc--ccccccccCcCCCC---CCCCCCCcHH
Confidence            68999999999999986   2222  24555555433321   1224569997

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=97.41  E-value=0.00012  Score=61.26  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             ccCChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhc
Q psy357           66 LDLNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        66 ~~i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      ..+++...+++  .+.|++|+|||||||||..||.|+-
T Consensus         6 ~~~~~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~   43 (412)
T cd04857           6 KETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQV   43 (412)
T ss_pred             chhhHHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccc
Confidence            34677777775  5789999999999999999999964

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=97.32  E-value=0.00013  Score=56.31  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEeeCCCCCCChhhhcccC
Q psy357           83 ITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        83 V~VaViDtGid~~HpDL~~~~~  104 (132)
                      |+||||||||+.+||+|++++.
T Consensus         1 V~VavIDsGvd~~hp~l~~~~~   22 (239)
T cd05561           1 VRVGMIDTGIDTAHPALSAVVI   22 (239)
T ss_pred             CEEEEEeCCCCCCCcccccCcc
Confidence            7999999999999999988764

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=97.27  E-value=0.00017  Score=56.85  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=22.4

Q ss_pred             EEEEeeCCCCCCChhhhcccCCCCcee
Q psy357           84 TTAIMDDGVDYMHMDLKNNYNAKASYD  110 (132)
Q Consensus        84 ~VaViDtGid~~HpDL~~~~~~~~~~d  110 (132)
                      +||||||||+..||||++++.....++
T Consensus         2 ~VaviDtGi~~~hp~l~~~~~~~~~~~   28 (291)
T cd04847           2 IVCVLDSGINRGHPLLAPALAEDDLDS   28 (291)
T ss_pred             EEEEecCCCCCCChhhhhhhccccccc
Confidence            799999999999999999986543333

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>KOG1114|consensus

Probab=92.04  E-value=0.1  Score=48.06  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CChHHHHhc--CCCCCceEEEEeeCCCCCCChhhhc
Q psy357           68 LNVEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        68 i~~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      +.+...-..  .|.|++|+|||+|||||..-|-|.-
T Consensus        66 t~a~~FL~kyPeYDGRgV~IaIlDtGvDP~apGl~v  101 (1304)
T KOG1114|consen   66 TGAYEFLKKYPEYDGRGVTIAILDTGVDPSAPGLQV  101 (1304)
T ss_pred             hhHHHHHHhCcCCCCCceEEEEeecCCCCCCCCceE
Confidence            444444443  4789999999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1p8j_A	471	Crystal Structure Of The Proprotein Convertase Furi		1e-19
2id4_A	503	The 1.9 A Structure Of Kex2 In Complex With An Ac-R		3e-14
1r64_A	481	The 2.2 A Crystal Structure Of Kex2 Protease In Com		5e-14
1ot5_A	477	The 2.4 Angstrom Crystal Sructure Of Kex2 In Comple		5e-14
3hjr_A	600	Crystal Structure Of Serine Protease Of Aeromonas S		1e-05
3ti9_A	352	Crystal Structure Of The Basic Protease Bprb From T		4e-04
3ti7_A	352	Crystal Structure Of The Basic Protease Bprv From T		6e-04

>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin Length = 471

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+ AWAQG TG  I  +I+DDG++  H DL 
Sbjct: 4   QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLA 57
Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNR 129
            NY+  AS+D +  DP P PRYT    NR
Sbjct: 58  GNYDPGASFDVNDQDPDPQPRYTQMNDNR 86

>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An Ac-R-E-R-K-Chloromethyl Ketone Inhibitor. Length = 503

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37  MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
           +KE++D    +DP F  QW+L N    G     D+NV   W   +TG  +  AI+DDG+D
Sbjct: 11  VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 66
Query: 94  YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           Y + DLK+N+ A+ S+DF+ N   P PR +DD+
Sbjct: 67  YENEDLKDNFXAEGSWDFNDNTNLPKPRLSDDY 99

>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid Inhibitor Length = 481

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37  MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
           +KE++D    +DP F  QW+L N    G     D+NV   W   +TG  +  AI+DDG+D
Sbjct: 4   VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 59
Query: 94  YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           Y + DLK+N+ A+ S+DF+ N   P PR +DD+
Sbjct: 60  YENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 92

>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With A Peptidyl- Boronic Acid Inhibitor Length = 477

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 37  MKESQDP---SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVD 93
           +KE++D    +DP F  QW+L N    G     D+NV   W   +TG  +  AI+DDG+D
Sbjct: 2   VKEAEDKLSINDPLFERQWHLVNPSFPGS----DINVLDLWYNNITGAGVVAAIVDDGLD 57
Query: 94  YMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           Y + DLK+N+ A+ S+DF+ N   P PR +DD+
Sbjct: 58  YENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 90

>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria Length = 600

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 44  SDPYFPFQWYLKNTGQNG-----GKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMD 98
           ++P    QWYL N+GQ+G     G A  DLN+  A   GV G+ +  A++DDG+   H D
Sbjct: 28  ANPLQDQQWYLLNSGQDGFSARGGIAGNDLNLWWAHRTGVLGQGVNVAVVDDGLAIAHPD 87
Query: 99  LKNN 102
           L +N
Sbjct: 88  LADN 91

>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The Ovine Footrot Pathogen, Dichelobacter Nodosus Length = 352

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 43  PSDPYFPFQW-YLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           P+DP +  QW Y  N G         +  +  W +G TG+ +  +++D G+   H+DL  
Sbjct: 3   PNDPSYRQQWHYFSNYG---------VKADKVWDRGFTGQGVVVSVVDTGI-LDHVDL-- 50
Query: 102 NYNAKASYDFSSNDPHPY--------PRYTDDWFNRWN 131
           N N    YDF S+ P           P    DWF+ W+
Sbjct: 51  NGNMLPGYDFISSAPKARDGDQRDNNPADEGDWFDNWD 88

>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The Ovine Footrot Pathogen, Dichelobacter Nodosus Length = 352

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 43  PSDPYFPFQW-YLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           P+DP +  QW Y  N G         +     W +G TG+ +  +++D G+   H+DL  
Sbjct: 3   PNDPSYRQQWHYFGNYG---------VKANKVWDRGFTGQGVVVSVVDTGI-LDHVDL-- 50
Query: 102 NYNAKASYDFSSNDPHPY--------PRYTDDWFNRWN 131
           N N    YDF S+ P+          P    DWF+ W+
Sbjct: 51  NGNMLPGYDFISSAPNARDGDQRDNNPADEGDWFDNWD 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	2e-33
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	5e-32
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	5e-30
3t41_A	471	Epidermin leader peptide processing serine protea;	2e-13
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	3e-13
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	9e-13
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	8e-12
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	7e-11
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	6e-10
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	1e-09
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	1e-09
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	1e-09
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	7e-09
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	7e-09
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	1e-08
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	3e-08
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	2e-06
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	4e-05
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	9e-05
4aks_A	360	PATG, thiazoline oxidase/subtilisin-like protease;	2e-04
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	4e-04

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score =  120 bits (303), Expect = 2e-33
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 28  VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
             +L+P    ++    +DP F  QW+L N    G     D+NV   W   +TG  +  AI
Sbjct: 5   DSSLLPVKEAEDKLSINDPLFERQWHLVNPSFPG----SDINVLDLWYNNITGAGVVAAI 60

Query: 88  MDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           +DDG+DY + DLK+N+ A+ S+DF+ N   P PR +DD+
Sbjct: 61  VDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY 99

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score =  116 bits (292), Expect = 5e-32
 Identities = 43/88 (48%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 42  DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           +P+DP FP QWYL    Q       DLNV+ AWAQG TG  I  +I+DDG++  H DL  
Sbjct: 5   EPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAG 58

Query: 102 NYNAKASYDFSSNDPHPYPRYTDDWFNR 129
           NY+  AS+D +  DP P PRYT    NR
Sbjct: 59  NYDPGASFDVNDQDPDPQPRYTQMNDNR 86

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 17/105 (16%)

Query: 28  VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
             +          +  ++  F  QW +     N           A++       N   AI
Sbjct: 103 TCSTCITSEKTIDRTSNESLFSRQWDMNKITNN----------GASYDDLPKHANTKIAI 152

Query: 88  MDDGVDYMHMDLKNNYNAKAS-------YDFSSNDPHPYPRYTDD 125
           +D GV   H DLKNN++  +        +  +  +        +D
Sbjct: 153 IDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVND 197

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 43  PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
           P+D ++  QW+  +           +  +  W  G TG+N+  A++D G+ + H DL   
Sbjct: 2   PNDQHYREQWHYFDRY--------GVKADKVWDMGFTGQNVVVAVVDTGILH-HRDLNA- 51

Query: 103 YNAKASYDFSSND 115
            N    YDF SN 
Sbjct: 52  -NVLPGYDFISNS 63

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 43  PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           P+D Y+  +Q+  +NT             + AW           A++D GVDY H DL  
Sbjct: 3   PNDTYYQGYQYGPQNT-----------YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG 51

Query: 102 NYNAKASYDFSSNDPHPY 119
                  YDF  ND  P 
Sbjct: 52  KVI--KGYDFVDNDYDPM 67

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671

 Score = 60.1 bits (145), Expect = 8e-12
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 28  VENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAI 87
           +  +    +   ++D  +      W L+            + V     +  +G NI  A+
Sbjct: 112 MYKIRKPGLNSTARDYGEELSNELWGLEA-----------IGVTQQLWEEASGTNIIVAV 160

Query: 88  MDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           +D GVD  H DL+      A Y  + ++  P    +   
Sbjct: 161 VDTGVDGTHPDLEGQV--IAGYRPAFDEELPAGTDSSYG 197

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 43  PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           P+DPYF   Q+  +            +    AW     G     AI+D GV   H DL  
Sbjct: 3   PNDPYFSSRQYGPQK-----------IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG 50

Query: 102 NYNAKASYDFSSNDPHPY 119
                  +DF  ND  P 
Sbjct: 51  --KVVGGWDFVDNDSTPQ 66

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
                W  G  G  IT  I+D G+D  H DL+         DF +    PY
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--KVIGWVDFVNGKTTPY 175

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
                      G  I  A++D GV+  H DL N  N +   DF+          TD 
Sbjct: 14  YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN--NVEQCKDFTGATTPINNSCTDR 68

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 14/83 (16%)

Query: 44  SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGV-TGRNITTAIMDDGVDYMHMDLKNN 102
           + P     W ++            +   + W+    +   I  A++D GVDY H DL  N
Sbjct: 2   TQPAQTIPWGIER-----------VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAAN 50

Query: 103 YNAKASYDFSSNDPHPYPRYTDD 125
                             R   D
Sbjct: 51  I--AWCVSTLRGKVSTKLRDCAD 71

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 43  PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
            +       WY    G            E   +       +  +++D GV ++   L ++
Sbjct: 16  SASARAEKPWYFDAIGLT----------ETTMSLTDKNTPVVVSVVDSGVAFIG-GLSDS 64

Query: 103 YNAKASYDFSSNDPHPYPRYTDDW 126
             AK  + F+ +      + ++  
Sbjct: 65  EFAK--FSFTQDGSPFPVKKSEAL 86

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 21/106 (19%)

Query: 28  VENLVPDIVMK-------ESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGV-T 79
           VE +  D                + P     W ++            +   + W+    +
Sbjct: 54  VEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIER-----------VKAPSVWSITDGS 102

Query: 80  GRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
              I  A++D GVDY H DL    N                R   D
Sbjct: 103 VSVIQVAVLDTGVDYDHPDLAA--NIAWCVSTLRGKVSTKLRDCAD 146

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 68  LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
           +   A  +QG TG N+  A++D G+D  H DLK             ++ +P+
Sbjct: 11  IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK----VAGGASMVPSETNPF 58

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)

Query: 31  LVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDD 90
           L+P        D           ++            +   A W     G      ++D 
Sbjct: 6   LIPYKQ----VDKVSALSEVPMGVEI-----------VEAPAVWRASAKGAGQIIGVIDT 50

Query: 91  GVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD 125
           G    H DL          + +++       ++D+
Sbjct: 51  GCQVDHPDLAE--RIIGGVNLTTDYGGDETNFSDN 83

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
             +   AQG  G N+  A++D G+   H DL    N      F + + +  
Sbjct: 12  KADKVQAQGFKGANVKVAVLDTGIQASHPDL----NVVGGASFVAGEAYNT 58

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 16/69 (23%)

Query: 51  QWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYD 110
            W +                 AA  +G+TG  +  A++D G+   H DL    N +    
Sbjct: 5   PWGISRVQAP-----------AAHNRGLTGSGVKVAVLDTGIST-HPDL----NIRGGAS 48

Query: 111 FSSNDPHPY 119
           F   +P   
Sbjct: 49  FVPGEPSTQ 57

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 4/52 (7%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP 120
                        N T  I+D G D  H DL    N     + S       P
Sbjct: 12  GATVLS--DSQAGNRTICIIDSGYDRSHNDLNA--NNVTGTNNSGTGNWYQP 59

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 68  LNVEAAWAQ-GVTGRNITTAIMDDGVDYMHMDLKNNY----NAKASYDFSSND 115
           +  + A +  G+ G+    A+ D G+D    D   +        A Y     +
Sbjct: 8   VKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTN 60

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN 128
            +     Q +    IT  I+D   DY     +        + +      P        F 
Sbjct: 37  GLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGA-EVSKVFPYWHEPAEPITPEDYAAFQ 95

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 17/74 (22%)

Query: 69  NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK-----------------NNYNAKASYDF 111
            V+    +   G     A++D G D  H   +                        +Y  
Sbjct: 5   QVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGE 64

Query: 112 SSNDPHPYPRYTDD 125
             ND   Y      
Sbjct: 65  WVNDKVAYYHDYSK 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	99.88
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	99.85
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.83
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	99.82
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	99.74
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	99.73
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	99.71
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	99.59
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	99.59
3t41_A	471	Epidermin leader peptide processing serine protea;	99.59
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	99.52
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	99.5
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	99.49
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	99.49
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	99.47
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	99.47
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	99.45
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	99.42
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	99.4
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	99.36
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	99.29
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	99.22
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	99.19
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	99.17
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	99.17
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	99.16
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	99.16
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.05
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.0
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	98.93
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	98.71
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	98.66
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	98.65
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	95.5
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	95.4
1t1e_A	552	Kumamolisin; proenzyme, prosubtilase, activation m	90.2

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=99.88  E-value=2.5e-23  Score=176.53  Aligned_cols=87  Identities=33%  Similarity=0.496  Sum_probs=78.0

Q ss_pred             CCCCCCCCcccccccCCCC-----CCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCC
Q psy357           42 DPSDPYFPFQWYLKNTGQN-----GGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP  116 (132)
Q Consensus        42 ~p~Dp~~~~QW~L~~~g~~-----~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~  116 (132)
                      .++||+|.+||||.++||.     .+.+|.|||+.+||+++++|++|+||||||||+++||||++|++. .+++|++++.
T Consensus        26 p~~DPl~~~QW~l~n~gq~~~~~~~g~~g~Dinv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~~~-~~~~~~~~~~  104 (600)
T 3hjr_A           26 PGANPLQDQQWYLLNSGQDGFSARGGIAGNDLNLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRP-GSKNVVTGSD  104 (600)
T ss_dssp             CCCCTTGGGCTTTCCSSCCTTSSCCCCTTCSCCCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGBCS-CCBCTTTSSS
T ss_pred             CCCCCChhhccCcccCCCccccccCCCCCcccCHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcccc-CcceeecCCC
Confidence            4499999999999999884     578899999999999999999999999999999999999999876 5799999988


Q ss_pred             CCCCCCCCCCCCCCCC
Q psy357          117 HPYPRYTDDWFNRWNN  132 (132)
Q Consensus       117 ~p~p~~~~~~~~~HGT  132 (132)
                      +|.|..   +.++|||
T Consensus       105 dp~p~~---~~~gHGT  117 (600)
T 3hjr_A          105 DPTPTD---PDTAHGT  117 (600)
T ss_dssp             CCCCCS---TTCCHHH
T ss_pred             CCCCCC---CCCChHH
Confidence            888764   3469998

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=99.85  E-value=9.7e-22  Score=163.31  Aligned_cols=87  Identities=49%  Similarity=0.882  Sum_probs=78.5

Q ss_pred             CCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC
Q psy357           40 SQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY  119 (132)
Q Consensus        40 ~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~  119 (132)
                      ...|+||+|.+||+|.++      .+.+|++.+||+.+++|++|+||||||||+++||||++++....+|||++++.+|.
T Consensus         3 ~~~p~Dp~~~~qW~l~~~------~~~~i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~~~~~d~~~~~~~p~   76 (471)
T 1p8j_A            3 YQEPTDPKFPQQWYLSGV------TQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQ   76 (471)
T ss_dssp             CCCCCCTTGGGCTTTSCT------TSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGGGCEETTTTBSCCC
T ss_pred             cccCCCcChhhCcCCCCC------CccCCChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCccCcccccCCCCCCC
Confidence            357999999999999974      34679999999999999999999999999999999999998888999999999998


Q ss_pred             CCCCCCCCCCCCC
Q psy357          120 PRYTDDWFNRWNN  132 (132)
Q Consensus       120 p~~~~~~~~~HGT  132 (132)
                      |.+...+.++|||
T Consensus        77 ~~~~~~d~~gHGT   89 (471)
T 1p8j_A           77 PRYTQMNDNRHGT   89 (471)
T ss_dssp             CCCCTTCTTCHHH
T ss_pred             CccCCCCCCCcHH
Confidence            8766667789998

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=99.83  E-value=1.7e-21  Score=163.14  Aligned_cols=96  Identities=35%  Similarity=0.592  Sum_probs=82.0

Q ss_pred             ccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCce
Q psy357           30 NLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASY  109 (132)
Q Consensus        30 ~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~  109 (132)
                      .+|+....+....|+||+|.+||||.++++    .+.+|++..+|+.+++|++|+|||||+||+++||||++++....+|
T Consensus         7 ~~~~~~~~~~~~~~~Dp~~~~qW~l~~~~~----~g~~i~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~~~~~~   82 (503)
T 2id4_A            7 SLLPVKEAEDKLSINDPLFERQWHLVNPSF----PGSDINVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSW   82 (503)
T ss_dssp             --CHHHHHHHHTTCCCTTGGGCTTTSCSSS----TTCSCCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCGGGCE
T ss_pred             hhhhHHHHhccCCCCCCChhhccCcCCCCC----cccccChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcccccCcc
Confidence            445666666777899999999999998765    4578999999999999999999999999999999999999888899


Q ss_pred             eccCCCCCCCCCCCCCCCCCCCC
Q psy357          110 DFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus       110 df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      ||++++.+|.|..   +.++|||
T Consensus        83 d~~~~~~~~~p~~---d~~gHGT  102 (503)
T 2id4_A           83 DFNDNTNLPKPRL---SDDYHGT  102 (503)
T ss_dssp             ETTTTBSCCCCCS---TTTTHHH
T ss_pred             cCCCCCCCCCCCC---CCCChHH
Confidence            9999888776643   3469998

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=99.74  E-value=8.2e-19  Score=139.49  Aligned_cols=62  Identities=34%  Similarity=0.647  Sum_probs=55.4

Q ss_pred             CCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCC
Q psy357           42 DPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSN  114 (132)
Q Consensus        42 ~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~  114 (132)
                      +||||+|.+||+|.+.        .+|++.++|+.+++|++|+||||||||+ +||||++++.  .+++|+.+
T Consensus         1 ~PnDp~~~~qW~l~~~--------~~i~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~--~~~~~~~~   62 (340)
T 3lpc_A            1 APNDQHYREQWHYFDR--------YGVKADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL--PGYDFISN   62 (340)
T ss_dssp             CCCCTTGGGCHHHHST--------TSCCHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC--CCEECCCC
T ss_pred             CCCCcchhhccCCCCc--------CCCCHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc--cCccccCC
Confidence            5999999999999862        3599999999999999999999999998 9999999985  48888764

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=99.73  E-value=8.2e-19  Score=137.06  Aligned_cols=72  Identities=32%  Similarity=0.557  Sum_probs=63.2

Q ss_pred             CCCCCCC-CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCC
Q psy357           42 DPSDPYF-PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP  120 (132)
Q Consensus        42 ~p~Dp~~-~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p  120 (132)
                      .||||+| .+||+|..           |++..+|+.+.++++|+||||||||+++||||++++.  .+|+|++++.+|. 
T Consensus         2 ~pndp~~~~~~w~l~~-----------i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~~~--~~~~~~~~~~~~~-   67 (280)
T 1dbi_A            2 TPNDTYYQGYQYGPQN-----------TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVI--KGYDFVDNDYDPM-   67 (280)
T ss_dssp             CCCCTTHHHHCCTTGG-----------GTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTEE--EEEETTTTBSCCC-
T ss_pred             CCCCcccccCCCChhh-----------cCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccCcc--cceeccCCCCCCC-
Confidence            6999999 89999986           8899999998777899999999999999999999874  6899998766553 


Q ss_pred             CCCCCCCCCCCC
Q psy357          121 RYTDDWFNRWNN  132 (132)
Q Consensus       121 ~~~~~~~~~HGT  132 (132)
                           +.++|||
T Consensus        68 -----d~~gHGT   74 (280)
T 1dbi_A           68 -----DLNNHGT   74 (280)
T ss_dssp             -----CSSSHHH
T ss_pred             -----CCCCcHH
Confidence                 4569998

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=99.71  E-value=2.6e-18  Score=134.07  Aligned_cols=72  Identities=32%  Similarity=0.516  Sum_probs=62.5

Q ss_pred             CCCCCCCCC-cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC
Q psy357           41 QDPSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY  119 (132)
Q Consensus        41 ~~p~Dp~~~-~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~  119 (132)
                      +.||||+|. +||+|+.           |++.++|+.+ +|++|+||||||||+.+||||++++.  .+|||++++.+|.
T Consensus         1 ~~pndp~~~~~~w~l~~-----------i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~~~--~~~~~~~~~~~~~   66 (279)
T 1thm_A            1 YTPNDPYFSSRQYGPQK-----------IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV--GGWDFVDNDSTPQ   66 (279)
T ss_dssp             CCCCCTTHHHHCCHHHH-----------TTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE--EEEETTTTBSCCC
T ss_pred             CCCCCCCCCccccChhh-----------CChHHHHhcC-CCCCCEEEEEccCCCCCCcchhcCcc--ccccccCCCCCCC
Confidence            369999998 8999986           8999999986 79999999999999999999999874  5899998765542


Q ss_pred             CCCCCCCCCCCCC
Q psy357          120 PRYTDDWFNRWNN  132 (132)
Q Consensus       120 p~~~~~~~~~HGT  132 (132)
                            +.++|||
T Consensus        67 ------d~~gHGT   73 (279)
T 1thm_A           67 ------NGNGHGT   73 (279)
T ss_dssp             ------CSSSHHH
T ss_pred             ------CCCCcHH
Confidence                  4569998

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=99.59  E-value=5.8e-17  Score=129.36  Aligned_cols=79  Identities=14%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             ccCCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCC--ceEEEEeeCCCCCCChhhhcccCCCCceeccCCC
Q psy357           38 KESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGR--NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSND  115 (132)
Q Consensus        38 ~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~--~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d  115 (132)
                      .....|+||++..||+|..           |++.++|+. ++|+  +|+||||||||+ +||||++++.  .+++|+++.
T Consensus        11 ~~~~~~~d~~~~~~W~l~~-----------i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~~~--~~~~~~~~~   75 (347)
T 2iy9_A           11 FLLFISASARAEKPWYFDA-----------IGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDSEF--AKFSFTQDG   75 (347)
T ss_dssp             ------------CCHHHHH-----------HTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTCEE--EEEECBTTC
T ss_pred             hcccCCCCcccccCcchhh-----------CChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcCcc--cCCcccCCC
Confidence            3456899999999999986           789999998 7999  999999999999 9999999874  589998752


Q ss_pred             CCCCCCCCCCCCCCCCC
Q psy357          116 PHPYPRYTDDWFNRWNN  132 (132)
Q Consensus       116 ~~p~p~~~~~~~~~HGT  132 (132)
                       ++++.....+.++|||
T Consensus        76 -~~~~~~~~~d~~gHGT   91 (347)
T 2iy9_A           76 -SPFPVKKSEALYIHGT   91 (347)
T ss_dssp             -CSSCCSSSHHHHHHHH
T ss_pred             -CCCCCCCCCCCCCcHH
Confidence             2332222234568998

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=99.59  E-value=6.9e-17  Score=128.03  Aligned_cols=75  Identities=23%  Similarity=0.331  Sum_probs=60.6

Q ss_pred             CCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCC--ceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCC
Q psy357           43 PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGR--NITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP  120 (132)
Q Consensus        43 p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~--~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p  120 (132)
                      ||||++..||+|+.           |+++++|+.+ +|+  +|+||||||||+++||||++++.  .+++|..+.....+
T Consensus         1 ~~dp~~~~~W~l~~-----------i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~~~--~~~~~~~~~~~~~~   66 (320)
T 2z30_A            1 STQPAQTIPWGIER-----------VKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIA--WCVSTLRGKVSTKL   66 (320)
T ss_dssp             CCCCBCCCCHHHHH-----------TTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGGEE--EEEECGGGCCBCCH
T ss_pred             CCCCCcCCCCChhh-----------cChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcccc--cCccccCCccCCCC
Confidence            69999999999986           8899999988 898  99999999999999999999874  58888876432111


Q ss_pred             CCCCCCCCCCCC
Q psy357          121 RYTDDWFNRWNN  132 (132)
Q Consensus       121 ~~~~~~~~~HGT  132 (132)
                      . ...+.++|||
T Consensus        67 ~-~~~d~~gHGT   77 (320)
T 2z30_A           67 R-DCADQNGHGT   77 (320)
T ss_dssp             H-HHBCSSSHHH
T ss_pred             C-CCCCCCCCHH
Confidence            1 1124579998

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=99.59  E-value=5.9e-16  Score=127.87  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             CCceeEEEeccceeeecccCcCCcccccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChH-HHHhcCCCCCc
Q psy357            4 MEQVHQAVQQSGFKRVKRGYKPLKVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVE-AAWAQGVTGRN   82 (132)
Q Consensus         4 ~~~v~~~~~q~~~~r~kR~~~~~~~~~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~-~aw~~~~~g~~   82 (132)
                      +|+|+++|+....+......               ....|+||++..||+|.++.           .. .+|+.+++|++
T Consensus        94 ~p~V~~v~~~~~~~~~~~~~---------------~~~~~~~~~~~~~w~l~~i~-----------~~~~~~~~~~~G~g  147 (471)
T 3t41_A           94 KNDIKYINATCSTCITSEKT---------------IDRTSNESLFSRQWDMNKIT-----------NNGASYDDLPKHAN  147 (471)
T ss_dssp             TTTEEEEEECCSSCBCCCCC---------------CCC---CCSCCCCHHHHTTT-----------TTTGGGGGCCSSCC
T ss_pred             CCCCcEEEecceeccccccc---------------cccCCCCccccccccHhhcc-----------CcHHHHhccCCCCC
Confidence            77888888654432221110               13468999999999999743           33 78999999999


Q ss_pred             eEEEEeeCCCCCCChhhhcccCCCCceeccCCC------CCCCCC-CCCCCCCCCCC
Q psy357           83 ITTAIMDDGVDYMHMDLKNNYNAKASYDFSSND------PHPYPR-YTDDWFNRWNN  132 (132)
Q Consensus        83 V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d------~~p~p~-~~~~~~~~HGT  132 (132)
                      |+||||||||+++||||++++.. ...+|+.+.      .+.... ....+.++|||
T Consensus       148 v~VaViDtGid~~Hp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT  203 (471)
T 3t41_A          148 TKIAIIDTGVMKNHDDLKNNFST-DSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT  203 (471)
T ss_dssp             CCEEEEESCCCTTCTTTTTTBCT-TCEECCCTTCGGGCCTTCCCCTTCCCCSSSHHH
T ss_pred             cEEEEEeCCCCCCChhHhcCccc-CCcccccCCCccCCCcccCCCCCCCcCCCCccc
Confidence            99999999999999999998764 345555431      111111 12235679998

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=99.52  E-value=8e-16  Score=119.87  Aligned_cols=71  Identities=21%  Similarity=0.333  Sum_probs=59.0

Q ss_pred             CCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCC
Q psy357           48 FPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF  127 (132)
Q Consensus        48 ~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~  127 (132)
                      ++.||+|.++++      .++++..+|..+++|++|+||||||||+.+||||++++.  .+|||++++.++.      +.
T Consensus         4 ~~~~W~l~~i~~------~~~~~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~--~~~d~~~~~~~~~------d~   69 (278)
T 2b6n_A            4 PSPTWGIDRIDQ------RNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGRAS--SGYDFIDNDYDAT------DC   69 (278)
T ss_dssp             ESCCHHHHHHTC------SSSSCCSEEECSCCCTTCEEEEEESCCCTTCGGGTTCEE--EEEETTTTBSCCC------CS
T ss_pred             CCCCCCccccCC------ccCCcchhcccCCCCCCCEEEEEeCCCCCCChhHhcccc--cCeecCCCCCCCC------CC
Confidence            467899998654      347788899999999999999999999999999999874  5899998765442      45


Q ss_pred             CCCCC
Q psy357          128 NRWNN  132 (132)
Q Consensus       128 ~~HGT  132 (132)
                      ++|||
T Consensus        70 ~gHGT   74 (278)
T 2b6n_A           70 NGHGT   74 (278)
T ss_dssp             SSHHH
T ss_pred             CCcHH
Confidence            79998

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=99.50  E-value=3.9e-15  Score=118.55  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             CCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCC-CCCCCC
Q psy357           44 SDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDP-HPYPRY  122 (132)
Q Consensus        44 ~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~-~p~p~~  122 (132)
                      +|+.+..||+|..           |++.++|+.+++|++|+||||||||+++||||++++.  .+++|+.+.. ++.+  
T Consensus        15 ~~~~~~~~w~l~~-----------i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~~~--~~~~~~~~~~~~~~~--   79 (327)
T 2x8j_A           15 VSALSEVPMGVEI-----------VEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERII--GGVNLTTDYGGDETN--   79 (327)
T ss_dssp             ESCCBSCCHHHHH-----------TTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGGEE--EEEECSSGGGGCTTC--
T ss_pred             cccccccCcchhh-----------cChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhccc--CCccccCCCCCCCCC--
Confidence            5788999999986           8999999999999999999999999999999999874  5789987532 2211  


Q ss_pred             CCCCCCCCCC
Q psy357          123 TDDWFNRWNN  132 (132)
Q Consensus       123 ~~~~~~~HGT  132 (132)
                       ..+.++|||
T Consensus        80 -~~d~~gHGT   88 (327)
T 2x8j_A           80 -FSDNNGHGT   88 (327)
T ss_dssp             -CCCSSSHHH
T ss_pred             -CCCCCCchH
Confidence             124579998

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=99.49  E-value=2e-14  Score=124.43  Aligned_cols=74  Identities=24%  Similarity=0.391  Sum_probs=57.1

Q ss_pred             CCCCCCcccccccCCCCCCCccccCChHHH-HhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC
Q psy357           44 SDPYFPFQWYLKNTGQNGGKAKLDLNVEAA-WAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY  122 (132)
Q Consensus        44 ~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~a-w~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~  122 (132)
                      .+++...||+|..           |++.++ |+. ++|++|+||||||||+.+||||++++.  .+|++..+...|... 
T Consensus       128 ~~~~~~~~W~l~~-----------I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~~--~g~~~~~~~~~p~~~-  192 (671)
T 1r6v_A          128 GEELSNELWGLEA-----------IGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQVI--AGYRPAFDEELPAGT-  192 (671)
T ss_dssp             SSTTGGGCHHHHH-----------TTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTBC--CEEEGGGTEEECTTC-
T ss_pred             cccccccCCchhc-----------cCCchhhhhc-cCCCCCEEEEEeCCCCCCCccccccEE--ecccccCCCcCCCCC-
Confidence            4666778999986           788999 998 799999999999999999999999874  578876544333211 


Q ss_pred             CCCCCCCCCC
Q psy357          123 TDDWFNRWNN  132 (132)
Q Consensus       123 ~~~~~~~HGT  132 (132)
                      ...+.++|||
T Consensus       193 d~~d~~gHGT  202 (671)
T 1r6v_A          193 DSSYGGSAGT  202 (671)
T ss_dssp             BCCTTCSHHH
T ss_pred             CCccCCCcch
Confidence            1124579998

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=99.49  E-value=1.8e-15  Score=119.00  Aligned_cols=72  Identities=22%  Similarity=0.281  Sum_probs=58.4

Q ss_pred             CCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCC
Q psy357           46 PYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDD  125 (132)
Q Consensus        46 p~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~  125 (132)
                      |.+..||+|+.           |++.++|+.+++|++|+||||||||+.+||||++++.  .+++|+......  .....
T Consensus         2 p~~~~~W~l~~-----------i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~~~--~~~~~~~~~~~~--~~~~~   66 (310)
T 2ixt_A            2 ASQQIPWGIKA-----------IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVE--QCKDFTGATTPI--NNSCT   66 (310)
T ss_dssp             CSCSSCHHHHH-----------HHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEE--EEEESSSSSSCE--ETCCC
T ss_pred             CcccCCCchhh-----------cCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhccc--ccccccCCCCCC--CCCCC
Confidence            67889999986           7899999999999999999999999999999999874  588998763211  11123


Q ss_pred             CCCCCCC
Q psy357          126 WFNRWNN  132 (132)
Q Consensus       126 ~~~~HGT  132 (132)
                      +.++|||
T Consensus        67 d~~gHGT   73 (310)
T 2ixt_A           67 DRNGHGT   73 (310)
T ss_dssp             CSSSHHH
T ss_pred             CCCCCHH
Confidence            5679998

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=99.47  E-value=3.6e-15  Score=116.75  Aligned_cols=70  Identities=23%  Similarity=0.377  Sum_probs=58.2

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      +.||+|.++++      .++++..+|..+++|++|+||||||||+.+||||++++.  .+|||++++.++.      +.+
T Consensus         3 ~~~W~l~~i~~------~~~~~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~~~--~~~~~~~~~~~~~------d~~   68 (284)
T 1sh7_A            3 NAIWGLDRIDQ------RNLPLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGRSV--SGYDFVDNDADSS------DCN   68 (284)
T ss_dssp             SCCHHHHHHTC------SSSSCCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTCEE--EEEETTTTBSCCC------CSS
T ss_pred             CCCcChhhcCC------cccCchhhhhcCCCCCCCEEEEEcCCCCCCChhHcCCcc--ccccccCCCCCCC------CCC
Confidence            46899998764      246788899999999999999999999999999999874  5899998765442      457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        69 gHGT   72 (284)
T 1sh7_A           69 GHGT   72 (284)
T ss_dssp             SHHH
T ss_pred             CcHH
Confidence            9998

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=99.47  E-value=4.5e-15  Score=115.18  Aligned_cols=68  Identities=22%  Similarity=0.393  Sum_probs=56.9

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      +.||+|.++.+      .++++..+|..+++|++|+||||||||+.+||||++++.  .+|+|...+.        .+.+
T Consensus         5 ~~~W~l~~i~~------~~~~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~~~--~~~~~~~~~~--------~d~~   68 (276)
T 4dzt_A            5 PAPWGLDRIDQ------RDLPLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGRAR--VGYDALGGNG--------QDCN   68 (276)
T ss_dssp             SCCHHHHHHTS------SSSSCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTCEE--EEEETTSSCS--------CCSS
T ss_pred             CCCCChhhcCC------ccCCcccceecCCCCCCcEEEEEccCCCCCChhHccCee--ccccCCCCCC--------CCCC
Confidence            57899998654      358999999999999999999999999999999999874  5889887322        2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        69 gHGT   72 (276)
T 4dzt_A           69 GHGT   72 (276)
T ss_dssp             SHHH
T ss_pred             CCHH
Confidence            9998

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=99.45  E-value=3.9e-15  Score=121.04  Aligned_cols=73  Identities=23%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             CCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCc--eEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCC
Q psy357           45 DPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRN--ITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRY  122 (132)
Q Consensus        45 Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~--V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~  122 (132)
                      ++....||+|..           |++..+|+.+ +|++  |+||||||||+++||||++++.  .+++|+.+.....+. 
T Consensus        78 ~~~~~~~w~~~~-----------i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~~~--~~~~~~~~~~~~~~~-  142 (395)
T 2z2z_A           78 QPAQTIPWGIER-----------VKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIA--WCVSTLRGKVSTKLR-  142 (395)
T ss_dssp             CCSCCCCHHHHH-----------TTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGGEE--EEEECGGGCCBCCHH-
T ss_pred             CccccCCcchhh-----------cCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhccc--cCccccCCcccCCCC-
Confidence            445567999975           7889999998 9999  9999999999999999999874  588888754321111 


Q ss_pred             CCCCCCCCCC
Q psy357          123 TDDWFNRWNN  132 (132)
Q Consensus       123 ~~~~~~~HGT  132 (132)
                      ...+.++|||
T Consensus       143 ~~~d~~gHGT  152 (395)
T 2z2z_A          143 DCADQNGHGT  152 (395)
T ss_dssp             HHBCSSSHHH
T ss_pred             CCCCCCCCHH
Confidence            0124679998

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=99.42  E-value=5e-14  Score=109.45  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||+|..           |++.++|+.+++|++|+||||||||+.+||||+  +  ..+++|+.++..+      .+.+
T Consensus         3 ~~~w~l~~-----------i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~--~--~~g~~~~~~~~~~------~d~~   61 (274)
T 1r0r_E            3 TVPYGIPL-----------IKADKVQAQGFKGANVKVAVLDTGIQASHPDLN--V--VGGASFVAGEAYN------TDGN   61 (274)
T ss_dssp             CCCTHHHH-----------TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC--E--EEEEECSTTCCTT------CCSS
T ss_pred             cCCCchhh-----------cCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc--C--CCCccccCCCCCC------CCCC
Confidence            46899985           899999999999999999999999999999994  2  3588998765432      2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        62 gHGT   65 (274)
T 1r0r_E           62 GHGT   65 (274)
T ss_dssp             SHHH
T ss_pred             CCHH
Confidence            9998

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=99.40  E-value=7.6e-14  Score=108.88  Aligned_cols=64  Identities=25%  Similarity=0.434  Sum_probs=53.2

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||+|..           |++..+|..+++|++|+||||||||+.+||||+.    ..+++|+.++.+|.     .+.+
T Consensus         3 ~~~w~l~~-----------i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----~~g~~~~~~~~~~~-----~d~~   62 (281)
T 1to2_E            3 SVPYGVSQ-----------IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----AGGASMVPSETNPF-----QDNN   62 (281)
T ss_dssp             BCCHHHHH-----------TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----EEEEECCTTCCCTT-----CCSS
T ss_pred             cCCcchhh-----------cChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----cCCccccCCCCCCC-----CCCC
Confidence            45899986           8999999999999999999999999999999953    35889987655442     2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        63 gHGT   66 (281)
T 1to2_E           63 SHGT   66 (281)
T ss_dssp             SHHH
T ss_pred             CcHH
Confidence            9998

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=99.36  E-value=2e-13  Score=105.96  Aligned_cols=62  Identities=24%  Similarity=0.468  Sum_probs=51.5

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||+|..           |++.++|+.+++|++|+|||||||| .+||||+  +  ..+++|+.++.++      .+.+
T Consensus         3 ~~~W~l~~-----------i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~--~--~~~~~~~~~~~~~------~d~~   60 (269)
T 1gci_A            3 SVPWGISR-----------VQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN--I--RGGASFVPGEPST------QDGN   60 (269)
T ss_dssp             CCCHHHHH-----------TTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC--E--EEEEECSTTCCSC------SCSS
T ss_pred             cCCcChhh-----------cCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc--c--cCCcccCCCCCCC------CCCC
Confidence            46899986           8999999999999999999999999 8999994  2  3589998765442      2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        61 gHGT   64 (269)
T 1gci_A           61 GHGT   64 (269)
T ss_dssp             SHHH
T ss_pred             CChH
Confidence            9998

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=99.29  E-value=7e-13  Score=103.70  Aligned_cols=58  Identities=14%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             ChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        69 ~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      .+++||+.+.++++|+||||||||+++||||+++... ..++|..++.++.     .+.++|||
T Consensus         9 G~~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~~-~~~~~~~~~~~~~-----~d~~gHGT   66 (306)
T 4h6w_A            9 GLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLT-RLPSLVSGEANAN-----GSMSTHGT   66 (306)
T ss_dssp             THHHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEEE-ECC---------------CCCCHHHH
T ss_pred             CHHHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCccc-CCCcccCCCCCCC-----CCCCCchH
Confidence            5899999987778999999999999999999987532 3456666544432     24568998

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=99.22  E-value=1.1e-12  Score=110.79  Aligned_cols=57  Identities=30%  Similarity=0.467  Sum_probs=48.6

Q ss_pred             CChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           68 LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        68 i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +++..+|+.+++|++|+||||||||+++||||++++.  .++||+++..++.      +.++|||
T Consensus       126 ~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~i~--~~~d~~~~~~~~~------D~~gHGT  182 (539)
T 3afg_A          126 VMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGKVI--GWVDFVNGKTTPY------DDNGHGT  182 (539)
T ss_dssp             CBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTTEE--EEEETTTCCSSCC------BSSSHHH
T ss_pred             cCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCCEe--eeEECCCCCCCCC------CCCCCHH
Confidence            6778899999999999999999999999999999874  5789988765443      4579998

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=99.19  E-value=1.7e-12  Score=101.31  Aligned_cols=68  Identities=10%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCC
Q psy357           48 FPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF  127 (132)
Q Consensus        48 ~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~  127 (132)
                      .+.||+|.++....     .++...+|+. .+|++|+||||||||+.+||||++++.  .+++|.+.   +      .+.
T Consensus         4 ~~~~W~l~~i~~~~-----~~~~~~~~~~-~~G~gv~VaViDsGvd~~H~~l~~~~~--~~~~~~~~---~------~d~   66 (279)
T 2pwa_A            4 TNAPWGLARISSTS-----PGTSTYYYDE-SAGQGSCVYVIDTGIEASHPEFEGRAQ--MVKTYYYS---S------RDG   66 (279)
T ss_dssp             TTCCHHHHHHTCSS-----TTCCCEECCT-TTTTTEEEEEEESCCCTTCGGGTTCEE--EEEESSSC---S------SCS
T ss_pred             CCCCcChhhcCCCC-----cccccccccC-CCCCCCEEEEEeCCCCCCChhHhCccc--cccCCCCC---C------CCC
Confidence            35689999754321     0111224543 689999999999999999999999874  58899831   1      245


Q ss_pred             CCCCC
Q psy357          128 NRWNN  132 (132)
Q Consensus       128 ~~HGT  132 (132)
                      ++|||
T Consensus        67 ~gHGT   71 (279)
T 2pwa_A           67 NGHGT   71 (279)
T ss_dssp             SSHHH
T ss_pred             CCCHH
Confidence            79998

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=99.17  E-value=2e-12  Score=112.19  Aligned_cols=89  Identities=9%  Similarity=0.167  Sum_probs=7.3

Q ss_pred             cccccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCC
Q psy357           27 KVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAK  106 (132)
Q Consensus        27 ~~~~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~  106 (132)
                      .+.++||++++..        ...+|+|.++.+..       ....+|..+.+|++|+||||||||+++||||++++.. 
T Consensus       139 ~V~~Vepd~~v~~--------~~~pWgL~~i~~~~-------~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~~-  202 (692)
T 2p4e_P          139 HVDYIEEDSSVFA--------QSIPWNLERITPPR-------YRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-  202 (692)
T ss_dssp             TEEEEEEEEEEEE--------C----------------------------------------------------------
T ss_pred             CceEEEecccccc--------CCCCcchhhccccc-------ccccccccCCCCCCcEEEEEcCCCCCCChhhcCceEe-
Confidence            3445567766543        23469998754311       1234788888999999999999999999999998753 


Q ss_pred             CceeccCC-CCCCCCCCCCCCCCCCCC
Q psy357          107 ASYDFSSN-DPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus       107 ~~~df~~~-d~~p~p~~~~~~~~~HGT  132 (132)
                      .+|+++.+ +..... ....+.++|||
T Consensus       203 ~~~~~~~d~dg~~~~-~~~~D~~GHGT  228 (692)
T 2p4e_P          203 TDFENVPEEDGTRFH-RQASKCDSHGT  228 (692)
T ss_dssp             ---------------------------
T ss_pred             cccccccCCCCCccc-CCCCCCCCcHH
Confidence            35665532 211111 11235679998

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=99.17  E-value=1.7e-12  Score=100.72  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=49.5

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||+|.++....     ..+...+|+.. +|++|+||||||||+++||||++++.  ..++|..+..         +.+
T Consensus         6 ~~~W~l~~i~~~~-----~~~~~~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~~~--~~~~~~~~~~---------d~~   68 (279)
T 3f7m_A            6 GATWGLTRISHRA-----RGSTAYAYDTS-AGAGACVYVIDTGVEDTHPDFEGRAK--QIKSYASTAR---------DGH   68 (279)
T ss_dssp             TCCHHHHHHTCSS-----SCCCSEEECTT-TTTTEEEEEEESCCCTTCGGGTTCEE--EEEECSSSSS---------CSS
T ss_pred             CCCCCHhhcCCCC-----CCCcceeecCC-CCCCCEEEEEcCCCCCCChhhccccc--cccCCCCCCC---------CCC
Confidence            3579999754321     12334567765 99999999999999999999999874  5777776433         346


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        69 gHGT   72 (279)
T 3f7m_A           69 GHGT   72 (279)
T ss_dssp             SHHH
T ss_pred             CcHH
Confidence            8998

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=99.16  E-value=3.2e-12  Score=108.39  Aligned_cols=74  Identities=9%  Similarity=0.219  Sum_probs=44.3

Q ss_pred             cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCC-CCCCCCCCCCCCCC
Q psy357           50 FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSN-DPHPYPRYTDDWFN  128 (132)
Q Consensus        50 ~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~-d~~p~p~~~~~~~~  128 (132)
                      .||+|.++.+..      . ...+|..+++|++|+||||||||+++||||++++.. .+|+++.. +..+.+. ...+.+
T Consensus         2 ~~WgL~rI~~~~------~-~~~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~~-~~~~~v~~~dg~~f~~-~~~D~~   72 (546)
T 2qtw_B            2 IPWNLERITPPR------Y-RADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-TDFENVPEEDGTRFHR-QASKCD   72 (546)
T ss_dssp             CCHHHHHTSCSS------C-C--------CCTTSEEEEEESCCCTTSTTTTTTEEE-EEEECCCCCC--------CTTTT
T ss_pred             CCCChhhcCCCc------c-cchhcccCCCCCCcEEEEECCCCCCCChHHcccccc-cCcccccCCCCccccC-CCCCCC
Confidence            589999876422      1 124899889999999999999999999999998753 45665532 2221111 123567


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        73 GHGT   76 (546)
T 2qtw_B           73 SHGT   76 (546)
T ss_dssp             HHHH
T ss_pred             ChHH
Confidence            9998

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=99.16  E-value=2.5e-12  Score=105.83  Aligned_cols=65  Identities=22%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||+|..           |++.++|+.  +|++|+||||||||+++||||++++.  .+++|........|    .+.+
T Consensus         3 ~~~W~l~~-----------i~~~~~w~~--~g~gv~VaViDtGvd~~Hp~l~~~~~--~~~~~~~~~~~~~~----~d~~   63 (441)
T 1y9z_A            3 TTPWGQTF-----------VGATVLSDS--QAGNRTICIIDSGYDRSHNDLNANNV--TGTNNSGTGNWYQP----GNNN   63 (441)
T ss_dssp             CCCHHHHH-----------TTCSSSCCT--TGGGCEEEEEESCCCTTSTTTTTSEE--EECCCTTSCCTTCC----CSSC
T ss_pred             CCCCChhh-----------cChhhhhhc--CCCCcEEEEEcCCCCCCChhHhcCcc--cCcccCCCCCCCCC----CCCC
Confidence            46899986           778889986  46799999999999999999999874  46777643321111    2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        64 gHGT   67 (441)
T 1y9z_A           64 AHGT   67 (441)
T ss_dssp             CHHH
T ss_pred             CcHH
Confidence            9998

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=99.05  E-value=8.5e-11  Score=96.28  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=47.6

Q ss_pred             ccCChHHHHh-cCCCCCceEEEEeeCCCCC------CChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           66 LDLNVEAAWA-QGVTGRNITTAIMDDGVDY------MHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        66 ~~i~~~~aw~-~~~~g~~V~VaViDtGid~------~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      ..|+++.+|+ .+++|++|+||||||||+.      .||||++++.  ..++|.+.. ++      .+.++|||
T Consensus         6 ~~i~~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i~--~~~~~~~~~-~~------~d~~gHGT   70 (434)
T 1wmd_A            6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKIT--ALYALGRTN-NA------NDTNGHGT   70 (434)
T ss_dssp             HHTTHHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCEE--EEEETTTTT-CC------CCSSSHHH
T ss_pred             hhhCchhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCCEe--eeccccCCC-CC------CCCCCcHH
Confidence            4589999998 7999999999999999999      8999999874  478887542 11      24579998

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=99.00  E-value=2.3e-10  Score=101.89  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=33.4

Q ss_pred             cCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357           67 DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN  102 (132)
Q Consensus        67 ~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~  102 (132)
                      .|++..+|+.+++|++|+||||||||+++||+|+..
T Consensus         3 ~i~~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~   38 (926)
T 1xf1_A            3 PSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT   38 (926)
T ss_dssp             TTCCHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC
T ss_pred             ccccHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC
Confidence            488999999989999999999999999999999853

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=98.93  E-value=1.2e-10  Score=90.27  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             CCC-CceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           78 VTG-RNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        78 ~~g-~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      ++| ++|+||||||||+++||||+++..  .+++|...+..+.+    .+.++|||
T Consensus         4 l~G~~gV~VaViDtGid~~Hpdl~g~~~--~~~~~~~~~~~~~d----~~~~gHGT   53 (282)
T 3zxy_A            4 LKGDHNIRVAILDGPVDIAHPCFQGADL--TVLPTLAPTAARSD----GFMSAHGT   53 (282)
T ss_dssp             CCCCTTSEEEEEESCCCTTSGGGTTCEE--EECCCSSCCCCCTT----CHHHHHHH
T ss_pred             CcCCCCCEEEEEcCCCCCCChhHCCCee--ecCcCCCCCCCCCC----CCCCCccc
Confidence            567 799999999999999999998763  46666665443322    23458997

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=98.71  E-value=1.3e-08  Score=81.53  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             ChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357           69 NVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN  102 (132)
Q Consensus        69 ~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~  102 (132)
                      .+.++|+.+++|++|+|||||||||++||||+++
T Consensus        19 G~~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~   52 (357)
T 4h6x_A           19 GLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGA   52 (357)
T ss_dssp             THHHHHHHCSCCTTSEEEEEESCCCTTSGGGTTC
T ss_pred             CHHHHHHhcCCCCCCEEEEEcCCCCCCChhHcCC
Confidence            4899999998889999999999999999999875

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=98.66  E-value=3e-09  Score=91.06  Aligned_cols=30  Identities=13%  Similarity=0.176  Sum_probs=25.6

Q ss_pred             HHhcCCCCCceEEEEeeCCCCCCChhhhcc
Q psy357           73 AWAQGVTGRNITTAIMDDGVDYMHMDLKNN  102 (132)
Q Consensus        73 aw~~~~~g~~V~VaViDtGid~~HpDL~~~  102 (132)
                      +|.....|++|+|||||||||++||+|.++
T Consensus        14 ~~~~~~~G~gViVgViDTGId~~Hp~f~d~   43 (621)
T 3vta_A           14 VPRRSQVESNIVVGVLDTGIWPESPSFDDE   43 (621)
T ss_dssp             CCCCHHHHTTCEEEEEESCBCTTSGGGCCT
T ss_pred             ccccCCCCCCCEEEEEecCCCCCChhhcCC
Confidence            355556799999999999999999999763

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=98.65  E-value=3.3e-09  Score=91.51  Aligned_cols=31  Identities=16%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             HHHHhcCCCCCceEEEEeeCCCCCCChhhhc
Q psy357           71 EAAWAQGVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        71 ~~aw~~~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      ..+|+.+.+|++|+||||||||+.+||+|++
T Consensus        14 ~~~w~~~~~G~gViVaViDTGId~~Hp~f~d   44 (649)
T 3i6s_A           14 SGLWPASGLGQDVIVAVLDSGIWPESASFQD   44 (649)
T ss_dssp             SSHHHHHGGGTTCEEEEEESCBCTTSGGGCC
T ss_pred             hhhHhccCCCCCCEEEEEccCCCCCChhhcc
Confidence            5699999999999999999999999999987

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=95.50  E-value=0.00046  Score=63.72  Aligned_cols=18  Identities=11%  Similarity=-0.191  Sum_probs=14.7

Q ss_pred             ceEEEEeeCCCCCCChhh
Q psy357           82 NITTAIMDDGVDYMHMDL   99 (132)
Q Consensus        82 ~V~VaViDtGid~~HpDL   99 (132)
                      +|+|||||||++..+++.
T Consensus       214 ~V~VAVIDTG~d~DL~d~  231 (1354)
T 3lxu_X          214 DGWLTIVDTTEQGDLDQA  231 (1354)
T ss_dssp             SSCEEEECSSSSCCSSCS
T ss_pred             CEEEEEEeCCCCCCcccc
Confidence            599999999998766554

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=95.40  E-value=0.0066  Score=56.20  Aligned_cols=25  Identities=40%  Similarity=0.589  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEeeCCCCCCChhhhc
Q psy357           77 GVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        77 ~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      .|.|+||+|||+|||||..+|.|+-
T Consensus        32 ~ydGrgv~iai~DtGVDP~a~glq~   56 (1354)
T 3lxu_X           32 EYDGRDVTIAIFDSGVDPRATGLET   56 (1354)
T ss_dssp             TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred             CCCCCccEEEEEeCCCCCCCCccee
Confidence            4789999999999999999999964

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A

Probab=90.20  E-value=0.14  Score=43.27  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             hHHHHhc--CCCCCceEEEEeeCCCCCCChhhhc
Q psy357           70 VEAAWAQ--GVTGRNITTAIMDDGVDYMHMDLKN  101 (132)
Q Consensus        70 ~~~aw~~--~~~g~~V~VaViDtGid~~HpDL~~  101 (132)
                      +..++..  +++|++++|||||.|.++.|+||+.
T Consensus       199 l~~~Y~~~~~~~G~g~tIaIid~g~~~~~~DL~~  232 (552)
T 1t1e_A          199 VAQAYQFPEGLDGQGQCIAIIELGGGYDETSLAQ  232 (552)
T ss_dssp             HHHHTTCCSSCCCTTCEEEEEESSCCCCHHHHHH
T ss_pred             HhhhhcCCCCCCCCCeEEEEEeCCCCCCHHHHHH
Confidence            3444443  4579999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	3e-21
d1p8ja2	334	c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou	2e-19
d1r6va_	671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	9e-11
d1dbia_	280	c.41.1.1 (A:) Thermostable serine protease {Bacill	2e-10
d1r0re_	274	c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls	7e-09
d1to2e_	281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	8e-09
d1thma_	279	c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar	3e-08
d2ixta1	309	c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus	3e-07
d1gcia_	269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	7e-07
d1t1ga_	357	c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac	1e-06
d1v6ca_	435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	1e-05
d2pwaa1	279	c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach	3e-05
d1wmda2	318	c.41.1.1 (A:1-318) Alkaline serine protease kp-43,	1e-04

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.8 bits (208), Expect = 3e-21
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 32  VPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDG 91
           +P    ++    +DP F  QW+L N    G     D+NV   W   +TG  +  AI+DDG
Sbjct: 1   LPVKEAEDKLSINDPLFERQWHLVNPSFPG----SDINVLDLWYNNITGAGVVAAIVDDG 56

Query: 92  VDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWN 131
           +DY + DLK+N+ A+ S+DF+ N   P PR +DD+     
Sbjct: 57  LDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRC 96

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (195), Expect = 2e-19
 Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 41  QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLK 100
           Q+P+DP FP QWYL    Q       DLNV+ AWAQG TG  I  +I+DDG++  H DL 
Sbjct: 3   QEPTDPKFPQQWYLSGVTQR------DLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLA 56

Query: 101 NNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN 132
            NY+  AS+D +  DP P PRYT    NR   
Sbjct: 57  GNYDPGASFDVNDQDPDPQPRYTQMNDNRHGT 88

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

 Score = 55.8 bits (133), Expect = 9e-11
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 39  ESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMD 98
            ++D  +      W L+            + V     +  +G NI  A++D GVD  H D
Sbjct: 123 TARDYGEELSNELWGLEA-----------IGVTQQLWEEASGTNIIVAVVDTGVDGTHPD 171

Query: 99  LKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           L+      A Y  + ++  P    +   
Sbjct: 172 LEGQVI--AGYRPAFDEELPAGTDSSYG 197

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

 Score = 54.6 bits (130), Expect = 2e-10
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 43  PSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKN 101
           P+D Y+  +Q+  +NT             + AW           A++D GVDY H DL  
Sbjct: 3   PNDTYYQGYQYGPQNT-----------YTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG 51

Query: 102 NYNA---KASYDFSSNDPHPYPRYTDDWFNRWNN 132
                      D+   D + +  +         N
Sbjct: 52  KVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETN 85

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

 Score = 50.3 bits (119), Expect = 7e-09
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 68  LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
           +  +   AQG  G N+  A++D G+   H DL    N      F + + +  
Sbjct: 11  IKADKVQAQGFKGANVKVAVLDTGIQASHPDL----NVVGGASFVAGEAYNT 58

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

 Score = 49.9 bits (118), Expect = 8e-09
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 68  LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP 120
           +   A  +QG TG N+  A++D G+D  H DLK             ++ +P+ 
Sbjct: 11  IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG----GASMVPSETNPFQ 59

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

 Score = 48.2 bits (113), Expect = 3e-08
 Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 13/88 (14%)

Query: 43  PSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNN 102
           P+DPYF  + Y              +    AW     G     AI+D GV   H DL   
Sbjct: 3   PNDPYFSSRQYGPQ----------KIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK 51

Query: 103 YNAKASYDFSSNDPHPYPRYTDDWFNRW 130
                 +DF  ND  P            
Sbjct: 52  V--VGGWDFVDNDSTPQNGNGHGTHCAG 77

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

 Score = 45.3 bits (105), Expect = 3e-07
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 68  LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWF 127
           +           G  I  A++D GV+  H DL NN   +   DF+          TD   
Sbjct: 13  IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNV--EQCKDFTGATTPINNSCTDRNG 70

Query: 128 N 128
           +
Sbjct: 71  H 71

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

 Score = 44.2 bits (103), Expect = 7e-07
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 68  LNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
           +   AA  +G+TG  +  A++D G+   H DL    N +    F   +P   
Sbjct: 11  VQAPAAHNRGLTGSGVKVAVLDTGIST-HPDL----NIRGGASFVPGEPSTQ 57

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

 Score = 43.6 bits (101), Expect = 1e-06
 Identities = 8/58 (13%), Positives = 16/58 (27%)

Query: 67  DLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTD 124
           D+     + +G+ G+    AI+  G  Y    L   + +                   
Sbjct: 10  DVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQ 67

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 17/50 (34%)

Query: 70  VEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY 119
           V A         N T  I+D G D  H DL  N     +   + N   P 
Sbjct: 11  VGATVLSDSQAGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPG 60

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 79  TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYT 123
            G+     ++D G++  H + +       +Y +SS D + +  + 
Sbjct: 29  AGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHC 73

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 68  LNVEAAWAQ-GVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDW 126
           +  + A +  G+ G+    A+ D G+D    D   +   +                  + 
Sbjct: 8   VKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNG 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.87
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	99.84
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	99.74
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	99.74
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	99.64
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	99.5
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.46
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	99.44
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	99.43
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	99.19
d2pwaa1	279	Proteinase K {Fungus (Tritirachium album), strain	99.16
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	98.99
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	98.51
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	94.68

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=7.3e-23  Score=158.26  Aligned_cols=86  Identities=50%  Similarity=0.893  Sum_probs=74.9

Q ss_pred             CCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCC
Q psy357           41 QDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYP  120 (132)
Q Consensus        41 ~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p  120 (132)
                      .+|+||+|++||+|.++.      ..+||+.+||+.+++|++|+||||||||+.+||||++++....+|++.+.+..+.+
T Consensus         3 ~~p~dp~~~~qw~l~~~~------~~~in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~~~~~~~~~~~~~~~~   76 (334)
T d1p8ja2           3 QEPTDPKFPQQWYLSGVT------QRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQP   76 (334)
T ss_dssp             CCCCCTTGGGCTTTSCTT------SCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGGGCEETTTTBSCCCC
T ss_pred             CCCCCCCchhcCCCCCCc------ccCCCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccccCCCccccCCCCcccc
Confidence            589999999999998754      35799999999999999999999999999999999999988788888777776666


Q ss_pred             CCCCCCCCCCCC
Q psy357          121 RYTDDWFNRWNN  132 (132)
Q Consensus       121 ~~~~~~~~~HGT  132 (132)
                      .....+.++|||
T Consensus        77 ~~~~~~~~gHGT   88 (334)
T d1p8ja2          77 RYTQMNDNRHGT   88 (334)
T ss_dssp             CCCTTCTTCHHH
T ss_pred             ccccccCccchh
Confidence            555556789997

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=6.4e-22  Score=153.62  Aligned_cols=86  Identities=37%  Similarity=0.619  Sum_probs=75.0

Q ss_pred             CCCCCCCCCCcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC
Q psy357           40 SQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY  119 (132)
Q Consensus        40 ~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~  119 (132)
                      ...+|||+|.+||||++.++    .+.+||+.+||+.+++|++|+||||||||+++||||++++....+|+|.+++.+..
T Consensus         9 ~~~~~dp~~~~qw~l~~~~~----~~~din~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~   84 (339)
T d2id4a2           9 KLSINDPLFERQWHLVNPSF----PGSDINVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPK   84 (339)
T ss_dssp             HTTCCCTTGGGCTTTSCSSS----TTCSCCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCGGGCEETTTTBSCCC
T ss_pred             cCCCCCCChhhccCCCCCCC----CccccCHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcccccccccccCCCccC
Confidence            45789999999999998765    46789999999999999999999999999999999999998889999998776655


Q ss_pred             CCCCCCCCCCCCC
Q psy357          120 PRYTDDWFNRWNN  132 (132)
Q Consensus       120 p~~~~~~~~~HGT  132 (132)
                      +..   +.++|||
T Consensus        85 ~~~---~~~~HGT   94 (339)
T d2id4a2          85 PRL---SDDYHGT   94 (339)
T ss_dssp             CCS---TTTTHHH
T ss_pred             CCc---ccccccc
Confidence            443   3468987

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=99.74  E-value=2e-19  Score=138.04  Aligned_cols=73  Identities=32%  Similarity=0.546  Sum_probs=63.4

Q ss_pred             CCCCCCCCC-cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC
Q psy357           41 QDPSDPYFP-FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY  119 (132)
Q Consensus        41 ~~p~Dp~~~-~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~  119 (132)
                      ++||||+|. +||+|+.           |++++||+++++|++|+||||||||+.+||||++++  ..+++|.+.+..+.
T Consensus         1 ~tp~dp~~~~~qw~l~~-----------i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~~--~~~~~~~~~~~~~~   67 (280)
T d1dbia_           1 WTPNDTYYQGYQYGPQN-----------TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKV--IKGYDFVDNDYDPM   67 (280)
T ss_dssp             CCCCCTTHHHHCCTTGG-----------GTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTE--EEEEETTTTBSCCC
T ss_pred             CCCCCcCcCccccChhh-----------CCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCCe--eecccccCCCCccc
Confidence            479999997 5999975           899999999999999999999999999999999987  46899988766543


Q ss_pred             CCCCCCCCCCCCC
Q psy357          120 PRYTDDWFNRWNN  132 (132)
Q Consensus       120 p~~~~~~~~~HGT  132 (132)
                            +.++|||
T Consensus        68 ------d~~~HGT   74 (280)
T d1dbia_          68 ------DLNNHGT   74 (280)
T ss_dssp             ------CSSSHHH
T ss_pred             ------ccccccc
Confidence                  3568997

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=99.74  E-value=2.1e-19  Score=137.01  Aligned_cols=72  Identities=32%  Similarity=0.516  Sum_probs=61.9

Q ss_pred             CCCCCCCC-CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCC
Q psy357           41 QDPSDPYF-PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPY  119 (132)
Q Consensus        41 ~~p~Dp~~-~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~  119 (132)
                      ++|+||+| .+||+|+.           |++++||+.+ +|++|+||||||||+.+||||++++.  .+++|.+++..|.
T Consensus         1 ~~p~dp~~~~~~w~l~~-----------i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~~~--~~~~~~~~~~~~~   66 (279)
T d1thma_           1 YTPNDPYFSSRQYGPQK-----------IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV--GGWDFVDNDSTPQ   66 (279)
T ss_dssp             CCCCCTTHHHHCCHHHH-----------TTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE--EEEETTTTBSCCC
T ss_pred             CCCCCCCcccCCcChhh-----------CCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCCee--ccccccccCcccc
Confidence            47999999 56788874           8999999988 99999999999999999999999874  6899998877664


Q ss_pred             CCCCCCCCCCCCC
Q psy357          120 PRYTDDWFNRWNN  132 (132)
Q Consensus       120 p~~~~~~~~~HGT  132 (132)
                            +.++|||
T Consensus        67 ------d~~~HGT   73 (279)
T d1thma_          67 ------NGNGHGT   73 (279)
T ss_dssp             ------CSSSHHH
T ss_pred             ------ccccccc
Confidence                  3468997

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=99.64  E-value=7.9e-17  Score=136.95  Aligned_cols=116  Identities=17%  Similarity=0.227  Sum_probs=77.0

Q ss_pred             CCCCceeEEEeccceeeecccCcCC--cccccccceeeccCCCCCCCCCCcccccccCCCCCCCccccCChHHH-HhcCC
Q psy357            2 VHMEQVHQAVQQSGFKRVKRGYKPL--KVENLVPDIVMKESQDPSDPYFPFQWYLKNTGQNGGKAKLDLNVEAA-WAQGV   78 (132)
Q Consensus         2 ~~~~~v~~~~~q~~~~r~kR~~~~~--~~~~~~p~~~~~~~~~p~Dp~~~~QW~L~~~g~~~~~~g~~i~~~~a-w~~~~   78 (132)
                      +.+|.|+++|+...++..+......  .....+..........++++++..||+|..           |++.++ |+. +
T Consensus        84 ~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~-----------i~~~~a~~~~-~  151 (671)
T d1r6va_          84 LALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEA-----------IGVTQQLWEE-A  151 (671)
T ss_dssp             SCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHH-----------TTCCHHHHHH-C
T ss_pred             hcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhh-----------cCccHHHHhc-C
Confidence            3578899999876555433221111  111111222223445678899999999986           667666 554 6


Q ss_pred             CCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           79 TGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        79 ~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      +|++|+||||||||+++||||++++.  .+|+|..++..+.... ..+.++|||
T Consensus       152 tG~gV~VaViDtGvd~~Hpdl~~~~~--~~~~~~~~~~~~~~~~-~~d~~gHGT  202 (671)
T d1r6va_         152 SGTNIIVAVVDTGVDGTHPDLEGQVI--AGYRPAFDEELPAGTD-SSYGGSAGT  202 (671)
T ss_dssp             SCTTCEEEEEESCCBTTSGGGTTTBC--CEEEGGGTEEECTTCB-CCTTCSHHH
T ss_pred             CCCCCEEEEEcCCcCCCChhhcCCcc--cCccccccCCCCCCCc-CcccCCCCc
Confidence            99999999999999999999999985  5888876655443222 224568997

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=99.50  E-value=3.4e-15  Score=113.01  Aligned_cols=62  Identities=21%  Similarity=0.291  Sum_probs=52.9

Q ss_pred             cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCC
Q psy357           50 FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNR  129 (132)
Q Consensus        50 ~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~  129 (132)
                      .||+|+.           |++.++|..+++|++|+||||||||+.+||||+.    ..+++|+.++..+.      +.++
T Consensus         4 ~~wgl~~-----------i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~----~~~~~~~~~~~~~~------d~~g   62 (274)
T d1r0re_           4 VPYGIPL-----------IKADKVQAQGFKGANVKVAVLDTGIQASHPDLNV----VGGASFVAGEAYNT------DGNG   62 (274)
T ss_dssp             CCTHHHH-----------TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----EEEEECSTTCCTTC------CSSS
T ss_pred             CCcchhh-----------cChHHHHHcCCCCCCeEEEEECCCCCCCChhhcc----cCCccccCCCCCCC------Cccc
Confidence            4799985           8899999999999999999999999999999964    35899998766553      3468


Q ss_pred             CCC
Q psy357          130 WNN  132 (132)
Q Consensus       130 HGT  132 (132)
                      |||
T Consensus        63 HGT   65 (274)
T d1r0re_          63 HGT   65 (274)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            997

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=99.46  E-value=1.7e-15  Score=115.56  Aligned_cols=68  Identities=24%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCC
Q psy357           50 FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNR  129 (132)
Q Consensus        50 ~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~  129 (132)
                      .+|+|+.           |++.+||..+++|++|+||||||||+++||||++++.  .+++|.+.+..+.+.  ..+.++
T Consensus         6 ~~wgl~~-----------i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~~~--~~~~~~~~~~~~~~~--~~d~~g   70 (309)
T d2ixta1           6 IPWGIKA-----------IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVE--QCKDFTGATTPINNS--CTDRNG   70 (309)
T ss_dssp             SCHHHHH-----------HHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEE--EEEESSSSSSCEETC--CCCSSS
T ss_pred             CChhHhh-----------cCChhhhccCCCCCCeEEEEEccCCCCCChhHhcccc--ccccccCCCCCCCCC--cccccc
Confidence            4799985           8899999999999999999999999999999999874  578998765544322  234578


Q ss_pred             CCC
Q psy357          130 WNN  132 (132)
Q Consensus       130 HGT  132 (132)
                      |||
T Consensus        71 HGT   73 (309)
T d2ixta1          71 HGT   73 (309)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            997

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=99.44  E-value=1.6e-14  Score=109.70  Aligned_cols=63  Identities=25%  Similarity=0.433  Sum_probs=53.0

Q ss_pred             cccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCC
Q psy357           50 FQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNR  129 (132)
Q Consensus        50 ~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~  129 (132)
                      -+|+|+.           |++++||+.+++|++|+|||||+||+.+||||+..    .+++|..++.++..     ..++
T Consensus         4 ~~~~l~~-----------i~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----~~~~~~~~~~~~~~-----~~~~   63 (281)
T d1to2e_           4 VPYGVSQ-----------IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----GGASMVPSETNPFQ-----DNNS   63 (281)
T ss_dssp             CCHHHHH-----------TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----EEEECCTTCCCTTC-----CSSS
T ss_pred             CCcChHH-----------hCcHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----CCccccCCCCCCCc-----CcCC
Confidence            4699975           89999999999999999999999999999999755    47888887766542     2358


Q ss_pred             CCC
Q psy357          130 WNN  132 (132)
Q Consensus       130 HGT  132 (132)
                      |||
T Consensus        64 HGT   66 (281)
T d1to2e_          64 HGT   66 (281)
T ss_dssp             HHH
T ss_pred             CCc
Confidence            997

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=99.43  E-value=2.3e-14  Score=108.29  Aligned_cols=62  Identities=24%  Similarity=0.443  Sum_probs=52.2

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      +.+|+|+.           |++.+||+.+++|++|+|||||+||+ +||||...    .+++|+.++..+.      +.+
T Consensus         3 ~~~w~l~~-----------i~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----~~~~~~~~~~~~~------d~~   60 (269)
T d1gcia_           3 SVPWGISR-----------VQAPAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----GGASFVPGEPSTQ------DGN   60 (269)
T ss_dssp             CCCHHHHH-----------TTHHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----EEEECSTTCCSCS------CSS
T ss_pred             CCCcchhH-----------hCcHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----ccccccCCCCCcc------ccc
Confidence            35699986           89999999999999999999999998 89999654    5889988766543      346


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        61 ~HGT   64 (269)
T d1gcia_          61 GHGT   64 (269)
T ss_dssp             SHHH
T ss_pred             hhhh
Confidence            8997

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=99.19  E-value=1e-12  Score=105.12  Aligned_cols=65  Identities=22%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             CcccccccCCCCCCCccccCChHHHHhcCCCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCC
Q psy357           49 PFQWYLKNTGQNGGKAKLDLNVEAAWAQGVTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFN  128 (132)
Q Consensus        49 ~~QW~L~~~g~~~~~~g~~i~~~~aw~~~~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~  128 (132)
                      ..||.+..           |++..+|+.  +|++|+|||||||||++||||++++.  .+++|........|    .+.+
T Consensus         3 ~~~wg~~~-----------i~a~~~~~~--~G~gv~VaviDtGid~~Hp~~~~~~~--~~~~~~~~~~~~~~----~d~~   63 (435)
T d1v6ca_           3 TTPWGQTF-----------VGATVLSDS--QAGNRTICIIDSGYDRSHNDLNANNV--TGTNNSGTGNWYQP----GNNN   63 (435)
T ss_dssp             CCCHHHHH-----------TTGGGSCCT--TGGGCEEEEEESCCCTTSTTTTTSEE--EECCCTTSCCTTCC----CSSC
T ss_pred             CCCccHhh-----------cCcchhhhc--CCCCcEEEEEcCCCCCCChhhccCee--eeeccCCCCCCCCC----CCCC
Confidence            35798876           678888873  89999999999999999999999864  47777654433222    2457


Q ss_pred             CCCC
Q psy357          129 RWNN  132 (132)
Q Consensus       129 ~HGT  132 (132)
                      +|||
T Consensus        64 gHGT   67 (435)
T d1v6ca_          64 AHGT   67 (435)
T ss_dssp             CHHH
T ss_pred             CcHH
Confidence            9998

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Proteinase K
species: Fungus (Tritirachium album), strain limber [TaxId: 37998]

Probab=99.16  E-value=7.3e-13  Score=100.40  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=34.4

Q ss_pred             CCCCceEEEEeeCCCCCCChhhhcccCCCCceeccCCCCCCCCCCCCCCCCCCCC
Q psy357           78 VTGRNITTAIMDDGVDYMHMDLKNNYNAKASYDFSSNDPHPYPRYTDDWFNRWNN  132 (132)
Q Consensus        78 ~~g~~V~VaViDtGid~~HpDL~~~~~~~~~~df~~~d~~p~p~~~~~~~~~HGT  132 (132)
                      .+|+||+|||||+||+.+||||+++......++|...           +.++|||
T Consensus        28 ~tG~Gv~VaViDsGid~~Hpdf~g~~~~~~~~~~~~~-----------d~~gHGT   71 (279)
T d2pwaa1          28 SAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSR-----------DGNGHGT   71 (279)
T ss_dssp             TTTTTEEEEEEESCCCTTCGGGTTCEEEEEESSSCSS-----------CSSSHHH
T ss_pred             CCCCCeEEEEECcCCCCCChhhcCCceeccCCCCCcc-----------cccCccc
Confidence            4899999999999999999999998765444444322           3468997

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=98.99  E-value=1e-10  Score=88.66  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             cCChHHHHhc-CCCCCceEEEEeeCCCCCCChhhhcccC
Q psy357           67 DLNVEAAWAQ-GVTGRNITTAIMDDGVDYMHMDLKNNYN  104 (132)
Q Consensus        67 ~i~~~~aw~~-~~~g~~V~VaViDtGid~~HpDL~~~~~  104 (132)
                      -|+++.||.. |++|+||+||||||||++.||+|.....
T Consensus         7 ~~~~~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~~   45 (318)
T d1wmda2           7 IVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEA   45 (318)
T ss_dssp             HTTHHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTT
T ss_pred             ccCchhHHHccCccccCeEEEEEcCCcCCCCcccccCcc
Confidence            3789999995 9999999999999999999999986543

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=98.51  E-value=8.2e-09  Score=78.53  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             ChHHHHh--cCCCCCceEEEEeeCCCCCCChhhhccc
Q psy357           69 NVEAAWA--QGVTGRNITTAIMDDGVDYMHMDLKNNY  103 (132)
Q Consensus        69 ~~~~aw~--~~~~g~~V~VaViDtGid~~HpDL~~~~  103 (132)
                      .+.++|.  .+++|+||+|||||+||+++||||+..+
T Consensus        10 ~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~   46 (357)
T d1t1ga_          10 DVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYF   46 (357)
T ss_dssp             HHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHH
Confidence            4667776  4789999999999999999999999864

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=94.68  E-value=0.0013  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=25.1

Q ss_pred             ChHHHHhc--CCCCCceEEEEeeCCCCC-CChhhhc
Q psy357           69 NVEAAWAQ--GVTGRNITTAIMDDGVDY-MHMDLKN  101 (132)
Q Consensus        69 ~~~~aw~~--~~~g~~V~VaViDtGid~-~HpDL~~  101 (132)
                      .+..+|..  ..+|++|+|||||+|++. .|+||..
T Consensus        11 ~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~   46 (369)
T d1ga6a_          11 EFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQ   46 (369)
T ss_dssp             GHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCcEEEEEecCCcccCHHHHHH
Confidence            35666664  357999999999999864 5788864