Psyllid ID: psy3586


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------6
MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccc
cccHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
mssphlnnlIIIGCMFTYMSVIFLGLdsnltsieaYPYICTARAWLLMAGFSLAFGAML
MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
*****LNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFG***
*SSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
**SPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiii
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query59 2.2.26 [Sep-21-2011]
O75899 941 Gamma-aminobutyric acid t yes N/A 1.0 0.062 0.474 2e-12
O88871 940 Gamma-aminobutyric acid t yes N/A 1.0 0.062 0.474 2e-12
Q80T41 940 Gamma-aminobutyric acid t yes N/A 1.0 0.062 0.474 2e-12
Q9Z0U4 991 Gamma-aminobutyric acid t no N/A 0.983 0.058 0.448 3e-09
Q9WV18 960 Gamma-aminobutyric acid t no N/A 0.983 0.060 0.448 3e-09
Q9UBS5 961 Gamma-aminobutyric acid t no N/A 0.983 0.060 0.448 3e-09
>sp|O75899|GABR2_HUMAN Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1 Back     alignment and function desciption
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 1   MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
           MSSP++NNLII+G M +Y S+   GLD +  S + +  +CT R W+L  G++ AFGAM 
Sbjct: 514 MSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMF 572




Receptor for GABA. The activity of this receptor is mediated by G-proteins that inhibit adenylyl cyclase activity, stimulates phospholipase A2, activates potassium channels, inactivates voltage-dependent calcium-channels and modulates inositol phospholipids hydrolysis. Plays a critical role in the fine-tuning of inhibitory synaptic transmission. Pre-synaptic GABA-B-R inhibit neurotransmitter release by down-regulating high-voltage activated calcium channels, whereas postsynaptic GABA-B-R decrease neuronal excitability by activating a prominent inwardly rectifying potassium (Kir) conductance that underlies the late inhibitory postsynaptic potentials. Not only implicated in synaptic inhibition but also in hippocampal long-term potentiation, slow wave sleep, muscle relaxation and antinociception.
Homo sapiens (taxid: 9606)
>sp|O88871|GABR2_RAT Gamma-aminobutyric acid type B receptor subunit 2 OS=Rattus norvegicus GN=Gabbr2 PE=1 SV=2 Back     alignment and function description
>sp|Q80T41|GABR2_MOUSE Gamma-aminobutyric acid type B receptor subunit 2 OS=Mus musculus GN=Gabbr2 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z0U4|GABR1_RAT Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus norvegicus GN=Gabbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q9WV18|GABR1_MOUSE Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus GN=Gabbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UBS5|GABR1_HUMAN Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens GN=GABBR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query59
357621275 1485 hypothetical protein KGM_22272 [Danaus p 1.0 0.039 0.881 4e-25
170045209 1304 gamma-aminobutyric acid type B receptor 1.0 0.045 0.864 2e-24
347972243 1333 AGAP004595-PA [Anopheles gambiae str. PE 1.0 0.044 0.847 5e-24
312382006 1355 hypothetical protein AND_05600 [Anophele 1.0 0.043 0.847 5e-24
403183124 1223 AAEL010408-PA [Aedes aegypti] 1.0 0.048 0.847 6e-24
157126111 1309 gaba-b receptor [Aedes aegypti] 1.0 0.045 0.847 6e-24
195112995 1225 GI22184 [Drosophila mojavensis] gi|19391 1.0 0.048 0.813 8e-24
345491324 1283 PREDICTED: gamma-aminobutyric acid type 1.0 0.045 0.847 9e-24
322790645 692 hypothetical protein SINV_03363 [Solenop 1.0 0.085 0.847 9e-24
307184271 1007 Gamma-aminobutyric acid type B receptor 1.0 0.058 0.847 9e-24
>gi|357621275|gb|EHJ73162.1| hypothetical protein KGM_22272 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query: 1   MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
           MSSPHLNNLII+GCM TYMSVIFLGLDS+L+SI A+PYICTARAWLLMAGFSLAFGAM 
Sbjct: 599 MSSPHLNNLIIVGCMLTYMSVIFLGLDSSLSSIAAFPYICTARAWLLMAGFSLAFGAMF 657




Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045209|ref|XP_001850209.1| gamma-aminobutyric acid type B receptor [Culex quinquefasciatus] gi|167868196|gb|EDS31579.1| gamma-aminobutyric acid type B receptor [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|347972243|ref|XP_557488.3| AGAP004595-PA [Anopheles gambiae str. PEST] gi|333469341|gb|EAL40175.3| AGAP004595-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312382006|gb|EFR27602.1| hypothetical protein AND_05600 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|403183124|gb|EAT37610.2| AAEL010408-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157126111|ref|XP_001654541.1| gaba-b receptor [Aedes aegypti] Back     alignment and taxonomy information
>gi|195112995|ref|XP_002001057.1| GI22184 [Drosophila mojavensis] gi|193917651|gb|EDW16518.1| GI22184 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|345491324|ref|XP_003426573.1| PREDICTED: gamma-aminobutyric acid type B receptor subunit 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322790645|gb|EFZ15429.1| hypothetical protein SINV_03363 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307184271|gb|EFN70737.1| Gamma-aminobutyric acid type B receptor subunit 2 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query59
FB|FBgn0027575 1221 GABA-B-R2 "metabotropic GABA-B 0.983 0.047 0.793 3.3e-21
UNIPROTKB|I3L6R6 449 GABBR2 "Uncharacterized protei 0.983 0.129 0.482 3.5e-11
FB|FBgn0031275 1305 GABA-B-R3 "metabotropic GABA-B 0.983 0.044 0.566 6.1e-11
ZFIN|ZDB-GENE-060503-620 935 gabbr2 "gamma-aminobutyric aci 0.983 0.062 0.482 8.4e-11
UNIPROTKB|F1NMD2 782 GABBR2 "Uncharacterized protei 0.983 0.074 0.482 8.5e-11
UNIPROTKB|F1MIZ5 835 GABBR2 "Uncharacterized protei 0.983 0.069 0.482 9.3e-11
MGI|MGI:2386030 940 Gabbr2 "gamma-aminobutyric aci 0.983 0.061 0.482 1.1e-10
RGD|619864 940 Gabbr2 "gamma-aminobutyric aci 0.983 0.061 0.482 1.1e-10
UNIPROTKB|O75899 941 GABBR2 "Gamma-aminobutyric aci 0.983 0.061 0.482 1.1e-10
UNIPROTKB|E2R738 942 GABBR2 "Uncharacterized protei 0.983 0.061 0.482 1.1e-10
FB|FBgn0027575 GABA-B-R2 "metabotropic GABA-B receptor subtype 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 262 (97.3 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 46/58 (79%), Positives = 55/58 (94%)

Query:     1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAM 58
             MSSPHLNNLII+GCM TY+S+IFLGLD+ L+S+ A+PYICTARAW+LMAGFSL+FGAM
Sbjct:   480 MSSPHLNNLIIVGCMMTYLSIIFLGLDTTLSSVAAFPYICTARAWILMAGFSLSFGAM 537




GO:0004965 "G-protein coupled GABA receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0031631 "negative regulation of synaptic vesicle fusion to presynaptic membrane" evidence=IDA
GO:0042048 "olfactory behavior" evidence=IDA
GO:0046676 "negative regulation of insulin secretion" evidence=IMP
UNIPROTKB|I3L6R6 GABBR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0031275 GABA-B-R3 "metabotropic GABA-B receptor subtype 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-620 gabbr2 "gamma-aminobutyric acid (GABA) B receptor, 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMD2 GABBR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIZ5 GABBR2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2386030 Gabbr2 "gamma-aminobutyric acid (GABA) B receptor, 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619864 Gabbr2 "gamma-aminobutyric acid (GABA) B receptor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75899 GABBR2 "Gamma-aminobutyric acid type B receptor subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R738 GABBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query59
pfam00003 238 pfam00003, 7tm_3, 7 transmembrane sweet-taste rece 0.004
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR Back     alignment and domain information
 Score = 33.0 bits (76), Expect = 0.004
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 1  MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML 59
           S   L+ L+++G +  ++S           +       C  R +L   GF+L F  +L
Sbjct: 24 ASGRELSFLLLLGLLLCFLSTFLFIGKPTDAT-------CILRRFLFGLGFTLCFSCLL 75


This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness. Length = 238

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 59
KOG1055|consensus 865 99.56
PF00003 238 7tm_3: 7 transmembrane sweet-taste receptor of 3 G 99.1
KOG1056|consensus 878 92.06
PF05255166 UPF0220: Uncharacterised protein family (UPF0220); 84.76
KOG3393|consensus157 84.76
>KOG1055|consensus Back     alignment and domain information
Probab=99.56  E-value=9.5e-17  Score=123.50  Aligned_cols=59  Identities=61%  Similarity=1.128  Sum_probs=58.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchhhhhhhHHHHHHHHHhhhccCC
Q psy3586           1 MSSPHLNNLIIIGCMFTYMSVIFLGLDSNLTSIEAYPYICTARAWLLMAGFSLAFGAML   59 (59)
Q Consensus         1 mSSP~lN~lil~G~il~y~svil~gld~~~~~~~~~~~~C~~r~Wll~iGFtl~fGamF   59 (59)
                      ||||++||+++.||.++|.+|+++|+|+..++...++.+|++|.|.+.+|||++||+||
T Consensus       498 ~s~P~~nni~~~G~~~~~~sv~~lgLd~~~Isv~~f~~lc~~r~w~l~~gft~~~Gamf  556 (865)
T KOG1055|consen  498 MSSPNLNNLIIVGCSLTLASVFLLGLDGYSISVNAFPFLCTARTWILGLGFTLAFGAMF  556 (865)
T ss_pred             cCCCCCCcceeeccceeeeeeeeccCCcceecHHHHHHHHHHHHHHHhheeecccchhh
Confidence            79999999999999999999999999999999999999999999999999999999998



>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG1056|consensus Back     alignment and domain information
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised Back     alignment and domain information
>KOG3393|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00