Psyllid ID: psy3616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSAV
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccEEEEcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccEEEEEccccccHHcccccccccEEEEEccccccccccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
vckgycenkgtcvkdargqpscrcvgsfigphcaqksefAYIAGGIAATVVFLIIIALFVWMICArserrrepkklvaqtndqtgsqvnfyyggapyaesvapshhstyahyyddeedgwempnfynetymkgeyrarnfsav
Flexible Loop (DISEMBL)
vckgycenkgtcvkdargqpsCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSerrrepkklvaqtndqtgsqVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSAV
Low Complexity Region (SEG)
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSAV
Disordered region (IsUnstruct)
****YCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICAR********************QVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKG**********
Disordered Region (DISOPRED)
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARS**********************FYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYM************
Disordered Region (DISEMBL)
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSAV
Disordered Region (DISPRO)
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKGEYRARNFSAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9NZR2	4599	Low-density lipoprotein r	yes	N/A	0.223	0.006	0.470	6e-05
Q9JI18	4599	Low-density lipoprotein r	yes	N/A	0.230	0.007	0.441	0.0002
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.342	0.010	0.408	0.0004
P98157	4543	Low-density lipoprotein r	no	N/A	0.272	0.008	0.439	0.0007

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 2    CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
            C  YC+N GTCV    G+P+C C   F GP+C +
Sbjct: 4253 CSNYCQNGGTCVPSVLGRPTCSCALGFTGPNCGK 4286

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.
Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 2    CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
            C  YC+N GTC+    G+P+C C   F GP+C +
Sbjct: 4253 CSNYCQNGGTCIPSTLGRPTCICALGFTGPNCGK 4286

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 23/49 (46%)

Query: 2    CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
            C  +C N GTC     G P+CRC   F GP C Q+    Y A     TV
Sbjct: 4236 CWEHCRNGGTCAASPSGMPTCRCPTGFTGPKCTQQVCAGYCANNSTCTV 4284

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAY 41
            VC  YC N G+C  +   QP+CRC  +FIG  C  +  F Y
Sbjct: 4270 VCTNYCHNNGSCTVNQGNQPNCRCPPTFIGDRCQYQQCFNY 4310

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
328723934	3561	PREDICTED: hypothetical protein LOC10016	0.923	0.037	0.916	5e-69
383856229	3582	PREDICTED: uncharacterized protein LOC10	0.923	0.036	0.706	4e-54
350413330	3564	PREDICTED: hypothetical protein LOC10074	0.923	0.037	0.706	4e-54
328782396	3510	PREDICTED: hypothetical protein LOC41282	0.923	0.037	0.706	4e-54
340717389	3564	PREDICTED: hypothetical protein LOC10064	0.923	0.037	0.706	5e-54
242011892	3516	conserved hypothetical protein [Pediculu	1.0	0.040	0.701	1e-53
389611561	517	conserved hypothetical protein, partial	0.923	0.255	0.721	2e-53
389615557	204	conserved hypothetical protein, partial	0.923	0.647	0.714	6e-53
195116387	3585	GI11276 [Drosophila mojavensis] gi|19391	1.0	0.039	0.729	7e-53
195385420	1162	GJ12441 [Drosophila virilis] gi|19414786	1.0	0.123	0.722	4e-52

>gi|328723934|ref|XP_001949468.2| PREDICTED: hypothetical protein LOC100162025 [Acyrthosiphon pisum]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/132 (91%), Positives = 126/132 (95%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYCENKGTCVKD RGQPSCRCVGSFIGPHC  KS+FAYIAGGIAATVVFLI+IALFV
Sbjct: 3382 VCDGYCENKGTCVKDLRGQPSCRCVGSFIGPHCEDKSDFAYIAGGIAATVVFLIVIALFV 3441

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEEDGW 120
            WMICARSER +EPKKL+AQTNDQTGSQVNFYYG APYAES+APSHHSTYAHYYDDEEDGW
Sbjct: 3442 WMICARSERVKEPKKLMAQTNDQTGSQVNFYYGAAPYAESIAPSHHSTYAHYYDDEEDGW 3501

Query: 121  EMPNFYNETYMK 132
            EMPNFYNETYMK
Sbjct: 3502 EMPNFYNETYMK 3513

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856229|ref|XP_003703612.1| PREDICTED: uncharacterized protein LOC100879487 [Megachile rotundata]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 108/133 (81%), Gaps = 1/133 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYC+N+G C+KD+RGQPSCRC GSF G  C +KSEF YI GGIA  V+ +I + L V
Sbjct: 3402 VCMGYCDNEGVCLKDSRGQPSCRCSGSFTGKRCTEKSEFFYITGGIAGGVILIIFVVLLV 3461

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC R+ R++EPKK++    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3462 WMICVRASRKKEPKKMLTPATDQNGSQVNFYYGAPTPYAESIAPSHHSTYAHYYDDEEDG 3521

Query: 120  WEMPNFYNETYMK 132
            WEMPNFYNETYMK
Sbjct: 3522 WEMPNFYNETYMK 3534

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413330|ref|XP_003489961.1| PREDICTED: hypothetical protein LOC100747564 [Bombus impatiens]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 108/133 (81%), Gaps = 1/133 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYC+N+G C+KD+RGQPSCRC GSF G  C +KSEF YI GGIA  V+ +I + L V
Sbjct: 3384 VCMGYCDNEGVCLKDSRGQPSCRCSGSFTGKRCTEKSEFFYITGGIAGGVILIIFVVLLV 3443

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC R+ R++EPKK++    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3444 WMICVRASRKKEPKKMLTPATDQNGSQVNFYYGAPTPYAESIAPSHHSTYAHYYDDEEDG 3503

Query: 120  WEMPNFYNETYMK 132
            WEMPNFYNETYMK
Sbjct: 3504 WEMPNFYNETYMK 3516

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782396|ref|XP_396277.4| PREDICTED: hypothetical protein LOC412825 [Apis mellifera]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 108/133 (81%), Gaps = 1/133 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYC+N+G C+KD+RGQPSCRC GSF G  C +KSEF YI GGIA  V+ +I + L V
Sbjct: 3330 VCMGYCDNEGVCLKDSRGQPSCRCSGSFTGKRCTEKSEFFYITGGIAGGVILIIFVVLLV 3389

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC R+ R++EPKK++    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3390 WMICVRASRKKEPKKMLTPATDQNGSQVNFYYGAPTPYAESIAPSHHSTYAHYYDDEEDG 3449

Query: 120  WEMPNFYNETYMK 132
            WEMPNFYNETYMK
Sbjct: 3450 WEMPNFYNETYMK 3462

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717389|ref|XP_003397166.1| PREDICTED: hypothetical protein LOC100648516 [Bombus terrestris]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 108/133 (81%), Gaps = 1/133 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYC+N+G C+KD+RGQPSCRC GSF G  C +KSEF YI GGIA  V+ +I + L V
Sbjct: 3384 VCMGYCDNEGVCLKDSRGQPSCRCSGSFTGKRCTEKSEFFYITGGIAGGVILIIFVVLLV 3443

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC R+ R++EPKK++    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3444 WMICVRASRKKEPKKMLTPATDQNGSQVNFYYGAPTPYAESIAPSHHSTYAHYYDDEEDG 3503

Query: 120  WEMPNFYNETYMK 132
            WEMPNFYNETYMK
Sbjct: 3504 WEMPNFYNETYMK 3516

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011892|ref|XP_002426677.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510848|gb|EEB13939.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 1/144 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC  YCEN+G CVKD++GQPSCRC+GSF G HCA+KSEFAYIAGG+A  V+F+I+I L V
Sbjct: 3336 VCDNYCENEGVCVKDSKGQPSCRCIGSFTGKHCAEKSEFAYIAGGVAGGVIFIILIILLV 3395

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMICARS R++EPKK++    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3396 WMICARSGRKKEPKKILQHAADQNGSQVNFYYGAPTPYAESIAPSHHSTYAHYYDDEEDG 3455

Query: 120  WEMPNFYNETYMKGEYRARNFSAV 143
            WEMPNFYNETYMK    +   +++
Sbjct: 3456 WEMPNFYNETYMKESLHSNKMNSL 3479

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611561|dbj|BAM19382.1| conserved hypothetical protein, partial [Papilio xuthus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 107/133 (80%), Gaps = 1/133 (0%)

Query: 1   VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
           VC  YC+N G CVKDARG+PSCRC GSF G HC  KSEFAY A G+A  V+F+I + L V
Sbjct: 334 VCLDYCDNGGECVKDARGEPSCRCTGSFTGRHCRDKSEFAYXASGVAGGVIFIIFLVLLV 393

Query: 61  WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
           WMICARS +++EPKK +    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 394 WMICARSTKKKEPKKTLTPAIDQNGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDG 453

Query: 120 WEMPNFYNETYMK 132
           WEMPNFYNETYMK
Sbjct: 454 WEMPNFYNETYMK 466

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389615557|dbj|BAM20738.1| conserved hypothetical protein, partial [Papilio polytes]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 107/133 (80%), Gaps = 1/133 (0%)

Query: 1   VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
           VC  YC+N G CVKD RG+PSCRC GSF G +C  KSEFAYIA G+A  V+F+I + L V
Sbjct: 42  VCLDYCDNGGECVKDVRGEPSCRCTGSFTGRYCRDKSEFAYIASGVAGGVIFIIFLVLLV 101

Query: 61  WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
           WMICARS +++EPKK +    DQ GSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 102 WMICARSTKKKEPKKTLTPAIDQNGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDG 161

Query: 120 WEMPNFYNETYMK 132
           WEMPNFYNETYMK
Sbjct: 162 WEMPNFYNETYMK 174

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116387|ref|XP_002002737.1| GI11276 [Drosophila mojavensis] gi|193913312|gb|EDW12179.1| GI11276 [Drosophila mojavensis]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/144 (72%), Positives = 118/144 (81%), Gaps = 1/144 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC GYCEN GTCVKD +G PSCRC+GSF GPHCA++SEFAYIAGGIA  V+F+III L +
Sbjct: 3405 VCDGYCENSGTCVKDLKGTPSCRCIGSFTGPHCAERSEFAYIAGGIAGAVIFIIIIVLLI 3464

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC RS +RR+PKK++A   DQTGSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 3465 WMICVRSTKRRDPKKMLAPAIDQTGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDG 3524

Query: 120  WEMPNFYNETYMKGEYRARNFSAV 143
            WEMPNFYNETYMK        S +
Sbjct: 3525 WEMPNFYNETYMKDGLHGGKMSTL 3548

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385420|ref|XP_002051404.1| GJ12441 [Drosophila virilis] gi|194147861|gb|EDW63559.1| GJ12441 [Drosophila virilis]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 117/144 (81%), Gaps = 1/144 (0%)

Query: 1    VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
            VC G+CEN GTCVKD +G PSCRCVGSF GPHCA++SEFAYIAGGIA  V+F+III L +
Sbjct: 976  VCDGFCENSGTCVKDLKGTPSCRCVGSFTGPHCAERSEFAYIAGGIAGAVIFIIIIVLLI 1035

Query: 61   WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
            WMIC RS +RR+PKK++    DQTGSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct: 1036 WMICVRSTKRRDPKKMLTPAIDQTGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDG 1095

Query: 120  WEMPNFYNETYMKGEYRARNFSAV 143
            WEMPNFYNETYMK        S +
Sbjct: 1096 WEMPNFYNETYMKDGLHGGKMSTL 1119

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
FB|FBgn0031879	3589	uif "uninflatable" [Drosophila	0.923	0.036	0.766	2.6e-56
ZFIN|ZDB-GENE-030131-5797	774	wu:fi19a06 "wu:fi19a06" [Danio	0.524	0.096	0.383	7.6e-07
WB|WBGene00018546	3170	F47C12.1 [Caenorhabditis elega	0.776	0.035	0.283	4.8e-06
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.685	0.020	0.330	2.5e-05
UNIPROTKB|I3LG92	810	LOC100514839 "Uncharacterized	0.342	0.060	0.408	3.2e-05
UNIPROTKB|H0Y7T7	798	LRP1B "Low-density lipoprotein	0.237	0.042	0.470	4e-05
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.342	0.010	0.428	5e-05
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.342	0.010	0.428	6.3e-05
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.342	0.010	0.428	6.3e-05
UNIPROTKB|K7GS03	1602	LOC100514839 "Uncharacterized	0.342	0.030	0.408	7.1e-05

FB|FBgn0031879 uif "uninflatable" [Drosophila melanogaster (taxid:7227)]

 Score = 598 (215.6 bits), Expect = 2.6e-56, P = 2.6e-56
 Identities = 102/133 (76%), Positives = 114/133 (85%)

Query:     1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFLIIIALFV 60
             VC G+CEN G CVKD +G PSCRCVGSF GPHCA++SEFAYIAGGIA  V+F+III L +
Sbjct:  3409 VCDGFCENSGACVKDLKGTPSCRCVGSFTGPHCAERSEFAYIAGGIAGAVIFIIIIVLLI 3468

Query:    61 WMICARSERRREPKKLVAQTNDQTGSQVNFYYGG-APYAESVAPSHHSTYAHYYDDEEDG 119
             WMIC RS +RR+PKK++    DQTGSQVNFYYG   PYAES+APSHHSTYAHYYDDEEDG
Sbjct:  3469 WMICVRSTKRRDPKKMLTPAIDQTGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDG 3528

Query:   120 WEMPNFYNETYMK 132
             WEMPNFYNETYMK
Sbjct:  3529 WEMPNFYNETYMK 3541

GO:0005112 "Notch binding" evidence=ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

ZFIN|ZDB-GENE-030131-5797 wu:fi19a06 "wu:fi19a06" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 33/86 (38%), Positives = 49/86 (56%)

Query:     6 CENKGTCVKDARGQPSCRC-VGS---FIGPHCAQKSEFAY--IAGGIAATVVFLIIIALF 59
             CEN G CV+D  GQP CRC VGS   + G  C  KS   +  +   +AA +  L+++A+ 
Sbjct:   685 CENDGVCVQDDAGQPVCRCAVGSDWWYYGERCQHKSSTRHTVVTAVLAAGLTLLLMLAIT 744

Query:    60 -VWMICARSERRREPKKLVAQTNDQT 84
              V ++C +  +RR+  KL   T+D T
Sbjct:   745 AVSVVCVK--KRRKTVKL--DTHDIT 766

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

WB|WBGene00018546 F47C12.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 124 (48.7 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 34/120 (28%), Positives = 53/120 (44%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFA----YIAGGIAATVVFLIIIA 57
             C  +C N G C K+  G   C C   F G  C  + + +    +IA  I   VV  III 
Sbjct:  2996 CNDFCLNDGICKKNNIGNVECICKDHFSGDRCELRFQASNNKLWIATVIVGVVVIGIIIV 3055

Query:    58 LFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYGGAPYAESVAPSHHSTYAHYYDDEE 117
             + V+MI  R    ++  +  +   D + +  N  YG  P  E   P     + +YY+D++
Sbjct:  3056 IIVFMISFRFNHVQDTNEKSSTLADLSPTANNILYGTPPVCE---PPR--AFGYYYEDDD 3110

GO:0007155 "cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 34/103 (33%), Positives = 50/103 (48%)

Query:     6 CENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATVVFL-IIIALFVWMIC 64
             C+N G C +DA+G+  C C   F+G HC   +  A+  G    T V + I++ L V M  
Sbjct:  4543 CQNGGLCKEDAQGELLCECRTQFVGEHCETSTMGAFGHGDANVTAVVVPIMVILLVMMAA 4602

Query:    65 ARSER--RREPKKLVAQTNDQTGSQ-VNFYYGG-APYAESVAP 103
             A +    R+ P   +A+    T SQ V F +G    + ES  P
Sbjct:  4603 AGAWYVIRKRPFGKLARMPAMTSSQSVTFRHGSNVEFNESGFP 4645

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

UNIPROTKB|I3LG92 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 20/49 (40%), Positives = 23/49 (46%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
             C  YC N GTC     G P+CRC   F GP C Q+    + A     TV
Sbjct:   677 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQQVCAGHCANNSTCTV 725

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0Y7T7 LRP1B "Low-density lipoprotein receptor-related protein 1B" [Homo sapiens (taxid:9606)]

 Score = 109 (43.4 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ 35
             C  YC+N GTCV    G+P+C C   F GP+C +
Sbjct:   485 CSNYCQNGGTCVPSVLGRPTCSCALGFTGPNCGK 518

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 21/49 (42%), Positives = 23/49 (46%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
             C  YC N GTC     G P+CRC   F GP C Q+    Y A     TV
Sbjct:  4237 CWEYCHNGGTCAASPSGMPTCRCPTGFTGPRCTQQVCAGYCANNSTCTV 4285

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/49 (42%), Positives = 23/49 (46%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
             C  YC N GTC     G P+CRC   F GP C Q+    Y A     TV
Sbjct:  4220 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQQVCAGYCANNSTCTV 4268

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 21/49 (42%), Positives = 23/49 (46%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
             C  YC N GTC     G P+CRC   F GP C Q+    Y A     TV
Sbjct:  4236 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQQVCAGYCANNSTCTV 4284

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|K7GS03 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 20/49 (40%), Positives = 23/49 (46%)

Query:     2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFAYIAGGIAATV 50
             C  YC N GTC     G P+CRC   F GP C Q+    + A     TV
Sbjct:  1294 CWEYCRNGGTCAASPSGMPTCRCPTGFTGPKCTQQVCAGHCANNSTCTV 1342

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	99.2
KOG1219|consensus	4289		98.77
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.43
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.0
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.88
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.77
smart00181	35	EGF Epidermal growth factor-like domain.	97.41
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	97.16
KOG1219|consensus	4289		97.13
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.02
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	96.71
KOG4289|consensus	2531		96.59
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	96.58
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.36
KOG3607|consensus	716		96.3
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.26
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	96.21
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	96.04
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	95.51
PTZ00370	296	STEVOR; Provisional	95.42
PF15330	107	SIT: SHP2-interacting transmembrane adaptor protei	95.25
KOG4289|consensus	2531		95.23
PTZ00046	358	rifin; Provisional	95.18
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.17
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	95.1
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	94.83
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	94.23
KOG3514|consensus	1591		93.37
PF06365	202	CD34_antigen: CD34/Podocalyxin family; InterPro: I	93.36
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	93.14
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	93.02
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	93.01
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	92.72
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	92.33
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	91.74
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	91.57
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	91.15
PF15050	133	SCIMP: SCIMP protein	90.98
PF04863	56	EGF_alliinase: Alliinase EGF-like domain; InterPro	90.8
PHA03283	542	envelope glycoprotein E; Provisional	90.47
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	90.16
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	90.06
KOG3516|consensus	1306		89.78
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	89.44
PF07213	79	DAP10: DAP10 membrane protein; InterPro: IPR009861	88.91
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	88.84
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	88.74
KOG1225|consensus	525		88.65
KOG3516|consensus	1306		88.62
PF15298	205	AJAP1_PANP_C: AJAP1/PANP C-terminus	88.39
PTZ00046	358	rifin; Provisional	88.24
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	88.01
PF12259	361	DUF3609: Protein of unknown function (DUF3609); In	88.01
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	87.95
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	87.82
PF11980	87	DUF3481: Domain of unknown function (DUF3481); Int	87.79
PF02158	404	Neuregulin: Neuregulin family; InterPro: IPR002154	87.76
smart00051	63	DSL delta serrate ligand.	87.64
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	87.61
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	87.56
PF15069	143	FAM163: FAM163 family	87.49
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	87.39
PF12662	24	cEGF: Complement Clr-like EGF-like	86.39
PHA03281	642	envelope glycoprotein E; Provisional	86.3
KOG1225|consensus	525		86.14
PF15102	146	TMEM154: TMEM154 protein family	85.78
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	85.68
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	85.48
PF10577	807	UPF0560: Uncharacterised protein family UPF0560; I	85.46
KOG1217|consensus	487		84.52
KOG1217|consensus	487		84.09
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	83.3
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	82.78
KOG3637|consensus	1030		82.5
PF06667	75	PspB: Phage shock protein B; InterPro: IPR009554 T	81.52
PF11669	102	WBP-1: WW domain-binding protein 1; InterPro: IPR0	81.48
PF03302	397	VSP: Giardia variant-specific surface protein; Int	81.01
PF15330	107	SIT: SHP2-interacting transmembrane adaptor protei	80.85
KOG1226|consensus	783		80.45
KOG3514|consensus	1591		80.1

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=99.20  E-value=1.8e-11  Score=90.95  Aligned_cols=68  Identities=24%  Similarity=0.465  Sum_probs=45.6

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccccc------------ceeeehhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQKSE------------FAYIAGGIAATVVFLIIIALFVWMICARSER   69 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~~~------------~~~ia~~i~~~Vl~lilIvllv~~~~~r~rr   69 (143)
                      +++|.|| +|... +...+.|+|+.||+|.|||...-            .-+|++.++.+++++|++..++..++.+.||
T Consensus        50 ~~YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~dLl~~~~~~k~n~~t~Yia~~~il~il~~i~is~~~~~~yr~~r~  128 (139)
T PHA03099         50 DGYCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQRSEKPNTTTSYIPSPGIVLVLVGIIITCCLLSVYRFTRR  128 (139)
T ss_pred             CCEeECC-EEEeeccCCCceeECCCCcccccccceeeeeeeccccccchhhhhhhhHHHHHHHHHHHHHHHHhhheeeec
Confidence            5899985 99988 67899999999999999998541            1256665555555455444444444444343


Q ss_pred             cc
Q psy3616          70 RR   71 (143)
Q Consensus        70 ~k   71 (143)
                      +|
T Consensus       129 ~~  130 (139)
T PHA03099        129 TK  130 (139)
T ss_pred             cc
Confidence            33

>KOG1219|consensus

Probab=98.77  E-value=1.8e-08  Score=100.05  Aligned_cols=33  Identities=24%  Similarity=0.639  Sum_probs=29.6

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+||++||+|... .+.+.|.|+.+|+|.|||..
T Consensus      3908 snPC~~GgtCip~-~n~f~CnC~~gyTG~~Ce~~ 3940 (4289)
T KOG1219|consen 3908 SNPCLTGGTCIPF-YNGFLCNCPNGYTGKRCEAR 3940 (4289)
T ss_pred             CCCCCCCCEEEec-CCCeeEeCCCCccCceeecc
Confidence            4789999999988 88899999999999999976

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.43  E-value=1.3e-07  Score=54.19  Aligned_cols=30  Identities=30%  Similarity=0.759  Sum_probs=26.6

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCC
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPH   32 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~r   32 (143)
                      .+||.|+|+|+....+.+.|.|++||+|++
T Consensus         3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    3 SNPCQNGGTCIDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred             CCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence            469999999999933899999999999985

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.00  E-value=7.6e-06  Score=47.10  Aligned_cols=30  Identities=37%  Similarity=0.919  Sum_probs=27.6

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc-CCCcc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI-GPHCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~-G~rCe   34 (143)
                      ++|.|+|+|+.. .+.+.|.|+.+|. |.+|+
T Consensus         9 ~~C~~~~~C~~~-~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        9 NPCQNGGTCVNT-VGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             CCcCCCCEeECC-CCCeEeECCCCCccCCcCC
Confidence            589999999988 8889999999999 99996

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.88  E-value=1.7e-05  Score=44.88  Aligned_cols=30  Identities=37%  Similarity=0.913  Sum_probs=27.4

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe   34 (143)
                      .+|.|+|.|... .+.+.|.|+.+|.|.+|+
T Consensus         9 ~~C~~~~~C~~~-~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           9 NPCQNGGTCVNT-VGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             CCcCCCCEeECC-CCCeEeECCCCCcCCcCC
Confidence            589999999988 778999999999999986

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.77  E-value=3.4e-05  Score=42.87  Aligned_cols=30  Identities=37%  Similarity=0.875  Sum_probs=27.4

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCC-Ccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGP-HCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~-rCe   34 (143)
                      ++|.|++.|+.. .+.+.|.|+.||.|. +|+
T Consensus         6 ~~C~~~~~C~~~-~~~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           6 NPCSNGGTCVNT-PGSYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCCEEecC-CCCeEeECCCCCcccCCcC
Confidence            789999999998 788999999999999 875

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.41  E-value=0.00019  Score=40.62  Aligned_cols=29  Identities=34%  Similarity=0.948  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcC-CCcc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIG-PHCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G-~rCe   34 (143)
                      ++|.|+ +|... .+.+.|.|+.||.| ..|+
T Consensus         6 ~~C~~~-~C~~~-~~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        6 GPCSNG-TCINT-PGSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCCC-EEECC-CCCeEeECCCCCccCCccC
Confidence            489988 99988 88999999999999 8885

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.16  E-value=0.00062  Score=39.13  Aligned_cols=26  Identities=38%  Similarity=1.034  Sum_probs=23.1

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCcCCCc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFIGPHC   33 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rC   33 (143)
                      .|.|+|+|+..   ..+|.|.+||+|+.|
T Consensus         7 ~C~~~G~C~~~---~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSP---CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCC---CCEEECCCCCcCCCC
Confidence            59999999954   469999999999987

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1219|consensus

Probab=97.13  E-value=0.00051  Score=69.91  Aligned_cols=35  Identities=26%  Similarity=0.814  Sum_probs=31.4

Q ss_pred             CC-CCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           2 CK-GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         2 C~-~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      |. ++|.|||.|+.. .+.+.|.|.+||.|+.|....
T Consensus      3945 Cs~n~C~~gg~C~n~-~gsf~CncT~g~~gr~c~~~~ 3980 (4289)
T KOG1219|consen 3945 CSKNVCGTGGQCINI-PGSFHCNCTPGILGRTCCAEK 3980 (4289)
T ss_pred             cccccccCCceeecc-CCceEeccChhHhcccCcccc
Confidence            44 789999999999 899999999999999998653

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.02  E-value=0.00032  Score=32.75  Aligned_cols=13  Identities=38%  Similarity=1.354  Sum_probs=11.2

Q ss_pred             eeeecCCCcCCCc
Q psy3616          21 SCRCVGSFIGPHC   33 (143)
Q Consensus        21 ~C~C~~gy~G~rC   33 (143)
                      .|.|++||+|++|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            5999999999998

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=96.71  E-value=0.0052  Score=44.34  Aligned_cols=34  Identities=32%  Similarity=0.798  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEeCC----CCCCeeeecC-------------CCcCCCccccc
Q psy3616           4 GYCENKGTCVKDA----RGQPSCRCVG-------------SFIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~~~----~~~~~C~C~~-------------gy~G~rCe~~~   37 (143)
                      +-|.++|.|+...    ..=+.|.|.+             .|.|.-|+.+.
T Consensus        13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkD   63 (103)
T PF12955_consen   13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKD   63 (103)
T ss_pred             cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeeccccccccc
Confidence            5699999999871    2348999999             48899999753

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>KOG4289|consensus

Probab=96.59  E-value=0.0015  Score=64.50  Aligned_cols=34  Identities=35%  Similarity=0.871  Sum_probs=31.5

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .+||.|+|+|... .+.+.|.|.++|+|++||...
T Consensus      1244 s~pC~nng~C~sr-EggYtCeCrpg~tGehCEvs~ 1277 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSR-EGGYTCECRPGFTGEHCEVSA 1277 (2531)
T ss_pred             cCCCCCCCceEEe-cCceeEEecCCccccceeeec
Confidence            4799999999999 999999999999999999854

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=96.58  E-value=0.0019  Score=47.63  Aligned_cols=11  Identities=36%  Similarity=0.773  Sum_probs=4.6

Q ss_pred             HHHHHHhhhcc
Q psy3616          61 WMICARSERRR   71 (143)
Q Consensus        61 ~~~~~r~rr~k   71 (143)
                      +++|++|||+|
T Consensus        18 ~~~~~~rRR~r   28 (130)
T PF12273_consen   18 LFYCHNRRRRR   28 (130)
T ss_pred             HHHHHHHHHhh
Confidence            33444444433

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.36  E-value=0.0029  Score=37.88  Aligned_cols=25  Identities=36%  Similarity=0.842  Sum_probs=23.2

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI   29 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~   29 (143)
                      +.|.+++.|+.. .+++.|.|++||.
T Consensus        10 ~~C~~~~~C~N~-~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen   10 HNCPENGTCVNT-EGSYSCSCPPGYE   34 (42)
T ss_dssp             SSSSTTSEEEEE-TTEEEEEESTTEE
T ss_pred             CcCCCCCEEEcC-CCCEEeeCCCCcE
Confidence            469889999999 9999999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG3607|consensus

Probab=96.30  E-value=0.0084  Score=55.82  Aligned_cols=32  Identities=25%  Similarity=0.759  Sum_probs=27.6

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      |..-|..+|+|...    ..|+|..||.++.|+.+.
T Consensus       628 ~~~~C~g~GVCnn~----~~ChC~~gwapp~C~~~~  659 (716)
T KOG3607|consen  628 CPTTCNGHGVCNNE----LNCHCEPGWAPPFCFIFG  659 (716)
T ss_pred             cccccCCCcccCCC----cceeeCCCCCCCcccccc
Confidence            44558888999877    899999999999999875

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.26  E-value=0.0042  Score=46.04  Aligned_cols=27  Identities=26%  Similarity=0.146  Sum_probs=16.2

Q ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHh
Q psy3616          41 YIAGGIAATVVFLIIIALFVWMICARS   67 (143)
Q Consensus        41 ~ia~~i~~~Vl~lilIvllv~~~~~r~   67 (143)
                      .|+++|.|+++.+|++++++++++.|+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~irR~   91 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIRRL   91 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            456666667776666666655555443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=96.21  E-value=0.0034  Score=52.89  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHhhhcccccccc
Q psy3616          54 IIIALFVWMICARSERRREPKKLV   77 (143)
Q Consensus        54 ilIvllv~~~~~r~rr~kk~k~~~   77 (143)
                      |++|++++++.+|+||+||.|+++
T Consensus       268 IVLIMvIIYLILRYRRKKKmkKKl  291 (299)
T PF02009_consen  268 IVLIMVIIYLILRYRRKKKMKKKL  291 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH
Confidence            333444555555666655555444

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=96.04  E-value=0.013  Score=35.06  Aligned_cols=16  Identities=31%  Similarity=0.424  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3616          47 AATVVFLIIIALFVWM   62 (143)
Q Consensus        47 ~~~Vl~lilIvllv~~   62 (143)
                      +++++.+++|+++++.
T Consensus        10 v~V~vg~~iiii~~~~   25 (38)
T PF02439_consen   10 VAVVVGMAIIIICMFY   25 (38)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=95.51  E-value=0.016  Score=48.67  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          45 GIAATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        45 ~i~~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      ||+++|+++|.++++++.+|.+|||+
T Consensus       262 giaalvllil~vvliiLYiWlyrrRK  287 (295)
T TIGR01478       262 GIAALVLIILTVVLIILYIWLYRRRK  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35666666666777777777766544

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>PTZ00370 STEVOR; Provisional

Probab=95.42  E-value=0.017  Score=48.44  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          45 GIAATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        45 ~i~~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      ||+++|++++.++++++++|.+|||+
T Consensus       258 giaalvllil~vvliilYiwlyrrRK  283 (296)
T PTZ00370        258 GIAALVLLILAVVLIILYIWLYRRRK  283 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34666666666667777777766554

>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT

Probab=95.25  E-value=0.049  Score=39.42  Aligned_cols=12  Identities=17%  Similarity=0.268  Sum_probs=7.2

Q ss_pred             eeeecCCCCCcc
Q psy3616          88 VNFYYGGAPYAE   99 (143)
Q Consensus        88 ~N~~~g~ppy~e   99 (143)
                      -+..|||-.+..
T Consensus        45 ~~p~YgNL~~~q   56 (107)
T PF15330_consen   45 DDPCYGNLELQQ   56 (107)
T ss_pred             CCcccccccccc
Confidence            467777655543

>KOG4289|consensus

Probab=95.23  E-value=0.013  Score=58.10  Aligned_cols=35  Identities=34%  Similarity=0.850  Sum_probs=30.5

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCccccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      -+||.|.|+|+.. ...++.|.|++||.|++||...
T Consensus      1721 lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~ 1756 (2531)
T KOG4289|consen 1721 LNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRA 1756 (2531)
T ss_pred             ccccccCceeecCCCCCceeEECCCcccCcchhhhc
Confidence            3799999999988 3458999999999999999864

>PTZ00046 rifin; Provisional

Probab=95.18  E-value=0.015  Score=50.13  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhhhccccccccc
Q psy3616          56 IALFVWMICARSERRREPKKLVA   78 (143)
Q Consensus        56 Ivllv~~~~~r~rr~kk~k~~~~   78 (143)
                      ++++++++..|+||+||.|++++
T Consensus       329 LIMvIIYLILRYRRKKKMkKKLQ  351 (358)
T PTZ00046        329 LIMVIIYLILRYRRKKKMKKKLQ  351 (358)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHH
Confidence            34455566677777777776653

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.17  E-value=0.014  Score=34.21  Aligned_cols=27  Identities=30%  Similarity=0.767  Sum_probs=21.2

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGP   31 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~   31 (143)
                      ..|.-+++|+.. .+.+.|.|.+||.|+
T Consensus         6 ~~C~~nA~C~~~-~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    6 GGCHPNATCTNT-GGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGS-TTCEEEE--TTSEEEEE-CEEECC
T ss_pred             CCCCCCcEeecC-CCCEEeECCCCCccC
Confidence            468888999999 779999999999986

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=95.10  E-value=0.016  Score=49.82  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHhhhccccccccc
Q psy3616          56 IALFVWMICARSERRREPKKLVA   78 (143)
Q Consensus        56 Ivllv~~~~~r~rr~kk~k~~~~   78 (143)
                      ++++++++..|+||+||.|++++
T Consensus       324 LIMvIIYLILRYRRKKKMkKKLQ  346 (353)
T TIGR01477       324 LIMVIIYLILRYRRKKKMKKKLQ  346 (353)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHH
Confidence            33455566667777777766653

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=94.83  E-value=0.021  Score=41.97  Aligned_cols=16  Identities=31%  Similarity=0.370  Sum_probs=7.0

Q ss_pred             HHHHHHHHHhhhcccc
Q psy3616          58 LFVWMICARSERRREP   73 (143)
Q Consensus        58 llv~~~~~r~rr~kk~   73 (143)
                      ++++.-..|+||..+.
T Consensus        18 ~~~~~~rRR~r~G~~P   33 (130)
T PF12273_consen   18 LFYCHNRRRRRRGLQP   33 (130)
T ss_pred             HHHHHHHHHhhcCCCC
Confidence            3344444444444333

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=94.23  E-value=0.11  Score=40.32  Aligned_cols=19  Identities=16%  Similarity=0.134  Sum_probs=8.6

Q ss_pred             HHHhhhccccccccccccC
Q psy3616          64 CARSERRREPKKLVAQTND   82 (143)
Q Consensus        64 ~~r~rr~kk~k~~~~~~~~   82 (143)
                      .+|.||++++-++|.-+.+
T Consensus       116 ~~R~r~~~rktRkYgvl~~  134 (163)
T PF06679_consen  116 TFRLRRRNRKTRKYGVLTT  134 (163)
T ss_pred             HHhhccccccceeecccCC
Confidence            3444443333355655544

Their function is unknown.

>KOG3514|consensus

Probab=93.37  E-value=0.041  Score=53.37  Aligned_cols=33  Identities=30%  Similarity=0.809  Sum_probs=29.5

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecC-CCcCCCccccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVG-SFIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~-gy~G~rCe~~~   37 (143)
                      +||+|+|+|... -..+.|-|.. +|.|+.||+..
T Consensus       629 nPC~N~g~C~eg-wNrfiCDCs~T~~~G~~CerE~  662 (1591)
T KOG3514|consen  629 NPCQNGGKCSEG-WNRFICDCSGTGFEGRTCEREA  662 (1591)
T ss_pred             CcccCCCCcccc-ccccccccccCcccCcccccee
Confidence            789999999988 7889999987 49999999854

>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins

Probab=93.36  E-value=0.48  Score=38.00  Aligned_cols=20  Identities=20%  Similarity=0.189  Sum_probs=11.7

Q ss_pred             cCCCCcceeeec---CCCC-Cccc
Q psy3616          81 NDQTGSQVNFYY---GGAP-YAES  100 (143)
Q Consensus        81 ~~~~gs~~N~~~---g~pp-y~e~  100 (143)
                      ..+||.|-|..+   +.+| -+|+
T Consensus       143 ~vEng~h~n~~l~v~~~~~E~qeK  166 (202)
T PF06365_consen  143 TVENGYHDNPTLSVAESQPEMQEK  166 (202)
T ss_pred             ecccCccCCcccccCCCCcccccc
Confidence            356777777666   4433 5555

The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=93.14  E-value=0.026  Score=49.80  Aligned_cols=18  Identities=17%  Similarity=0.767  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy3616          46 IAATVVFLIIIALFVWMI   63 (143)
Q Consensus        46 i~~~Vl~lilIvllv~~~   63 (143)
                      +++++++++|+++++|++
T Consensus       358 VlgvavlivVv~viv~vc  375 (439)
T PF02480_consen  358 VLGVAVLIVVVGVIVWVC  375 (439)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHhhee
Confidence            334444444444444433

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=93.02  E-value=0.071  Score=44.95  Aligned_cols=31  Identities=16%  Similarity=0.386  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3616          45 GIAATVVFLIIIALFVWMICARSERRREPKK   75 (143)
Q Consensus        45 ~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~   75 (143)
                      .++.+|++||+|++.+++.+.|+|+++|+.|
T Consensus       262 iiaIliIVLIMvIIYLILRYRRKKKmkKKlQ  292 (299)
T PF02009_consen  262 IIAILIIVLIMVIIYLILRYRRKKKMKKKLQ  292 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            3455666666555444445677777766544

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=93.01  E-value=0.028  Score=47.24  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          47 AATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        47 ~~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      +++|+++|||+.+|+++|+||||.
T Consensus       152 aVVI~~iLLIA~iIa~icyrrkR~  175 (290)
T PF05454_consen  152 AVVIAAILLIAGIIACICYRRKRK  175 (290)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhc
Confidence            344444445556667777775543

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=92.72  E-value=0.044  Score=36.33  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=0.4

Q ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616          43 AGGIAATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        43 a~~i~~~Vl~lilIvllv~~~~~r~r   68 (143)
                      ++.|+++|+.+++.+++++++.+|.|
T Consensus        12 aavIaG~Vvgll~ailLIlf~iyR~r   37 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLILFLIYRMR   37 (64)
T ss_dssp             -------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555555554444444445443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=92.33  E-value=0.024  Score=43.58  Aligned_cols=13  Identities=31%  Similarity=0.695  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q psy3616          53 LIIIALFVWMICA   65 (143)
Q Consensus        53 lilIvllv~~~~~   65 (143)
                      ||+|++++|++|.
T Consensus        63 ll~il~lvf~~c~   75 (154)
T PF04478_consen   63 LLGILALVFIFCI   75 (154)
T ss_pred             HHHHHHhheeEEE
Confidence            3333344443433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=91.74  E-value=0.12  Score=39.82  Aligned_cols=6  Identities=33%  Similarity=0.490  Sum_probs=2.5

Q ss_pred             eehhHH
Q psy3616          42 IAGGIA   47 (143)
Q Consensus        42 ia~~i~   47 (143)
                      |+++|+
T Consensus        80 iivgvi   85 (179)
T PF13908_consen   80 IIVGVI   85 (179)
T ss_pred             eeeehh
Confidence            444443

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=91.57  E-value=0.26  Score=34.76  Aligned_cols=16  Identities=25%  Similarity=1.076  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHhhhc
Q psy3616          55 IIALFVWMICARSERR   70 (143)
Q Consensus        55 lIvllv~~~~~r~rr~   70 (143)
                      ++++++|++|+.+|||
T Consensus        45 il~VilwfvCC~kRkr   60 (94)
T PF05393_consen   45 ILLVILWFVCCKKRKR   60 (94)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            4445567777766554

; GO: 0016021 integral to membrane

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=91.15  E-value=0.13  Score=42.90  Aligned_cols=19  Identities=5%  Similarity=0.251  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy3616          48 ATVVFLIIIALFVWMICAR   66 (143)
Q Consensus        48 ~~Vl~lilIvllv~~~~~r   66 (143)
                      |++|++|||++||.+++.|
T Consensus       278 G~~La~lvlivLiaYli~R  296 (306)
T PF01299_consen  278 GAALAGLVLIVLIAYLIGR  296 (306)
T ss_pred             HHHHHHHHHHHHHhheeEe
Confidence            3333333333333333333

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF15050 SCIMP: SCIMP protein

Probab=90.98  E-value=0.56  Score=34.93  Aligned_cols=11  Identities=18%  Similarity=0.220  Sum_probs=4.2

Q ss_pred             HHHHHHHhhhc
Q psy3616          60 VWMICARSERR   70 (143)
Q Consensus        60 v~~~~~r~rr~   70 (143)
                      ++++.+|...|
T Consensus        26 IlyCvcR~~lR   36 (133)
T PF15050_consen   26 ILYCVCRWQLR   36 (133)
T ss_pred             HHHHHHHHHHH
Confidence            33333443333

>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=90.80  E-value=0.085  Score=34.03  Aligned_cols=33  Identities=33%  Similarity=0.796  Sum_probs=20.4

Q ss_pred             CCCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      -+|.-+|....+   ..+.|.|.|..-|.|+.|+..
T Consensus        17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~   52 (56)
T PF04863_consen   17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL   52 (56)
T ss_dssp             S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred             CCcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence            367788888766   356799999999999999874

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.47  E-value=0.33  Score=43.89  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q psy3616          44 GGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTN   81 (143)
Q Consensus        44 ~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~~~~~~   81 (143)
                      +++++.++++++++++||.+...+++++|..+-+-+|.
T Consensus       403 ~~~~~~~~~~~~~~l~vw~c~~~r~~~~~~y~ilnpf~  440 (542)
T PHA03283        403 LLAIICTCAALLVALVVWGCILYRRSNRKPYEVLNPFE  440 (542)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeehhhcCCcccccCCCc
Confidence            33444444455555666644333555566665555443

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=90.16  E-value=0.18  Score=35.89  Aligned_cols=9  Identities=22%  Similarity=0.844  Sum_probs=4.1

Q ss_pred             HHHHHhhhc
Q psy3616          62 MICARSERR   70 (143)
Q Consensus        62 ~~~~r~rr~   70 (143)
                      ++|+|.|++
T Consensus        61 v~CC~~K~K   69 (98)
T PF07204_consen   61 VCCCRAKHK   69 (98)
T ss_pred             HHHhhhhhh
Confidence            344444444

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=90.06  E-value=0.088  Score=37.26  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=11.3

Q ss_pred             eehhHHHHHHHH-HHHHHHHHHHHHH
Q psy3616          42 IAGGIAATVVFL-IIIALFVWMICAR   66 (143)
Q Consensus        42 ia~~i~~~Vl~l-ilIvllv~~~~~r   66 (143)
                      |+++++++++++ +|+.+++|++.+|
T Consensus        68 iagi~vg~~~~v~~lv~~l~w~f~~r   93 (96)
T PTZ00382         68 IAGISVAVVAVVGGLVGFLCWWFVCR   93 (96)
T ss_pred             EEEEEeehhhHHHHHHHHHhheeEEe
Confidence            444333333333 4444555655444

>KOG3516|consensus

Probab=89.78  E-value=0.25  Score=48.39  Aligned_cols=32  Identities=31%  Similarity=0.804  Sum_probs=28.9

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCC-CcCCCccccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~g-y~G~rCe~~~   37 (143)
                      +|+|||+|+.. -..+.|-|... |.|+.|....
T Consensus       962 ~C~NGG~Cver-y~gytCDCs~Tay~Gp~Cs~ei  994 (1306)
T KOG3516|consen  962 PCLNGGHCVER-YDGYTCDCSRTAYDGPFCSKEI  994 (1306)
T ss_pred             cccCCCEEEEe-cCceeeccccCcCCCCcccccc
Confidence            69999999999 77899999987 9999999864

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=89.44  E-value=0.088  Score=31.83  Aligned_cols=6  Identities=50%  Similarity=0.589  Sum_probs=2.7

Q ss_pred             eeehhH
Q psy3616          41 YIAGGI   46 (143)
Q Consensus        41 ~ia~~i   46 (143)
                      .|+.++
T Consensus        12 aIa~~V   17 (40)
T PF08693_consen   12 AIAVGV   17 (40)
T ss_pred             EEEEEE
Confidence            444443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins

Probab=88.91  E-value=0.51  Score=32.52  Aligned_cols=18  Identities=33%  Similarity=0.617  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhhhcccc
Q psy3616          56 IALFVWMICARSERRREP   73 (143)
Q Consensus        56 Ivllv~~~~~r~rr~kk~   73 (143)
                      +|+++.++|.|.++|+++
T Consensus        49 LIv~~vy~car~r~r~~~   66 (79)
T PF07213_consen   49 LIVLVVYYCARPRRRPTQ   66 (79)
T ss_pred             HHHHHHHhhcccccCCcc
Confidence            333455677776655444

In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=88.84  E-value=1.5  Score=33.63  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=13.5

Q ss_pred             eeeehhHHHHHHHHHHHHHHHH
Q psy3616          40 AYIAGGIAATVVFLIIIALFVW   61 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~   61 (143)
                      ..|++++.++|+++.+|+.+++
T Consensus        61 tAIaGIVfgiVfimgvva~i~i   82 (155)
T PF10873_consen   61 TAIAGIVFGIVFIMGVVAGIAI   82 (155)
T ss_pred             ceeeeeehhhHHHHHHHHHHHH
Confidence            3566656677777776664433

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=88.74  E-value=0.51  Score=36.45  Aligned_cols=13  Identities=46%  Similarity=0.708  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHH
Q psy3616          47 AATVVFLIIIALF   59 (143)
Q Consensus        47 ~~~Vl~lilIvll   59 (143)
                      +++|+++|+|+++
T Consensus        36 iaIvVliiiiivl   48 (189)
T PF05568_consen   36 IAIVVLIIIIIVL   48 (189)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444433

>KOG1225|consensus

Probab=88.65  E-value=0.32  Score=44.05  Aligned_cols=30  Identities=33%  Similarity=0.979  Sum_probs=24.8

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      |...|.++|.|+ .    ..|.|..||+|..|+..
T Consensus       314 cpadC~g~G~Ci-~----G~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  314 CPADCSGHGKCI-D----GECLCDEGYTGELCIQR  343 (525)
T ss_pred             CCccCCCCCccc-C----CceEeCCCCcCCccccc
Confidence            557888888888 4    58999999999999885

>KOG3516|consensus

Probab=88.62  E-value=0.26  Score=48.30  Aligned_cols=33  Identities=24%  Similarity=0.687  Sum_probs=29.5

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeec-CCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~~   36 (143)
                      .+||+|||.|... -..+.|.|. .||.|..|...
T Consensus       550 PN~CehgG~C~Qs-~~~f~C~C~~TGY~GatCHts  583 (1306)
T KOG3516|consen  550 PNPCEHGGKCSQS-WDDFECNCELTGYKGATCHTS  583 (1306)
T ss_pred             CccccCCCccccc-ccceeEeccccccccccccCC
Confidence            4799999999986 788999999 89999999864

>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus

Probab=88.39  E-value=0.69  Score=37.04  Aligned_cols=11  Identities=36%  Similarity=0.606  Sum_probs=8.5

Q ss_pred             CCCccccCCCC
Q psy3616          95 APYAESVAPSH  105 (143)
Q Consensus        95 ppy~e~~~~~~  105 (143)
                      .+|.|+..|+|
T Consensus       166 tayn~sl~csh  176 (205)
T PF15298_consen  166 TAYNDSLQCSH  176 (205)
T ss_pred             cccCCCCCCCc
Confidence            37888888876

>PTZ00046 rifin; Provisional

Probab=88.24  E-value=0.3  Score=42.22  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=22.3

Q ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3616          43 AGGIAATVVFLIIIALFVWMICARSERRREPKK   75 (143)
Q Consensus        43 a~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~   75 (143)
                      +..|+.+|++||++++-+++-+.|+|++||+-|
T Consensus       319 aSiiAIvVIVLIMvIIYLILRYRRKKKMkKKLQ  351 (358)
T PTZ00046        319 ASIVAIVVIVLIMVIIYLILRYRRKKKMKKKLQ  351 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence            333566777777777666667788888766543

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=88.01  E-value=0.38  Score=38.99  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=7.3

Q ss_pred             eeeehhH-HHHHHHHHHHH
Q psy3616          40 AYIAGGI-AATVVFLIIIA   57 (143)
Q Consensus        40 ~~ia~~i-~~~Vl~lilIv   57 (143)
                      +.|+++| +|++.++|+|+
T Consensus        37 ~~I~iaiVAG~~tVILVI~   55 (221)
T PF08374_consen   37 VKIMIAIVAGIMTVILVIF   55 (221)
T ss_pred             eeeeeeeecchhhhHHHHH
Confidence            3444444 33333333333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length

Probab=88.01  E-value=0.6  Score=40.34  Aligned_cols=28  Identities=14%  Similarity=0.475  Sum_probs=14.3

Q ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3616          42 IAGGIAATVVFLIIIALFVWMICARSER   69 (143)
Q Consensus        42 ia~~i~~~Vl~lilIvllv~~~~~r~rr   69 (143)
                      ....|+++++++++++.++|+++..++|
T Consensus       299 ~~i~v~~~~vli~vl~~~~~~~~~~~~~  326 (361)
T PF12259_consen  299 VHIAVCGAIVLIIVLISLAWLYRTFRRR  326 (361)
T ss_pred             EEEehhHHHHHHHHHHHHHhheeehHHH
Confidence            3334455555555555566765544333

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=87.95  E-value=0.59  Score=43.31  Aligned_cols=27  Identities=26%  Similarity=0.850  Sum_probs=12.2

Q ss_pred             eeehhHHHHHHHHHH-HHHHHHHHHHHhh
Q psy3616          41 YIAGGIAATVVFLII-IALFVWMICARSE   68 (143)
Q Consensus        41 ~ia~~i~~~Vl~lil-Ivllv~~~~~r~r   68 (143)
                      ||.+++++-|+++++ |+++.|.+| |++
T Consensus       270 WII~gVlvPv~vV~~Iiiil~~~LC-Rk~  297 (684)
T PF12877_consen  270 WIIAGVLVPVLVVLLIIIILYWKLC-RKN  297 (684)
T ss_pred             EEEehHhHHHHHHHHHHHHHHHHHh-ccc
Confidence            444444444444444 444445444 444

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=87.82  E-value=0.71  Score=31.95  Aligned_cols=12  Identities=50%  Similarity=0.969  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHH
Q psy3616          54 IIIALFVWMICA   65 (143)
Q Consensus        54 ilIvllv~~~~~   65 (143)
                      ++++++||.+.+
T Consensus        16 ~iiaIvvW~iv~   27 (81)
T PF00558_consen   16 LIIAIVVWTIVY   27 (81)
T ss_dssp             HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHH
Confidence            334555666544

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins

Probab=87.79  E-value=0.84  Score=31.90  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          48 ATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        48 ~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      +++++++.+.+.+.++|+|.+..
T Consensus        24 ga~llL~~v~l~vvL~C~r~~~a   46 (87)
T PF11980_consen   24 GALLLLVAVCLGVVLYCHRFHWA   46 (87)
T ss_pred             cHHHHHHHHHHHHHHhhhhhccc
Confidence            34444444555667788887764

It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.

>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]

Probab=87.76  E-value=0.16  Score=44.27  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             ehhHHHHHHHHHHHH-HHHH-HHHHHhhhcccccccc
Q psy3616          43 AGGIAATVVFLIIIA-LFVW-MICARSERRREPKKLV   77 (143)
Q Consensus        43 a~~i~~~Vl~lilIv-llv~-~~~~r~rr~kk~k~~~   77 (143)
                      +++|.++++.|+++. ++|+ ++|..||+|||.+..|
T Consensus         9 VLTITgIcvaLlVVGi~Cvv~aYCKTKKQRkklh~hL   45 (404)
T PF02158_consen    9 VLTITGICVALLVVGIVCVVDAYCKTKKQRKKLHEHL   45 (404)
T ss_dssp             -------------------------------------
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344555555555544 4555 6666666655444333

Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.

>smart00051 DSL delta serrate ligand

Probab=87.64  E-value=0.42  Score=31.29  Aligned_cols=22  Identities=27%  Similarity=0.750  Sum_probs=16.4

Q ss_pred             CCcEEEeCCCCCCeeeecCCCcCCCc
Q psy3616           8 NKGTCVKDARGQPSCRCVGSFIGPHC   33 (143)
Q Consensus         8 NgG~C~~~~~~~~~C~C~~gy~G~rC   33 (143)
                      ++.+|...    -.|.|.+||+|+.|
T Consensus        42 ~~~~Cd~~----G~~~C~~Gw~G~~C   63 (63)
T smart00051       42 GHYTCDEN----GNKGCLEGWMGPYC   63 (63)
T ss_pred             CCccCCcC----CCEecCCCCcCCCC
Confidence            45566432    57889999999988

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=87.61  E-value=0.44  Score=39.91  Aligned_cols=52  Identities=21%  Similarity=0.334  Sum_probs=21.1

Q ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCCcceeeecC
Q psy3616          40 AYIAGGIAATVVFLIIIALFVWMICARSERRREPKKLVAQTNDQTGSQVNFYYG   93 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~~~~~~~~~gs~~N~~~g   93 (143)
                      |.+++++++.+++|+|+.++++ .+.|.+|+||..++..+...++-.+ ....|
T Consensus       213 W~iv~g~~~G~~~L~ll~~lv~-~~vr~krk~k~~eMEr~A~~gE~L~-~~~VG  264 (278)
T PF06697_consen  213 WKIVVGVVGGVVLLGLLSLLVA-MLVRYKRKKKIEEMERRAEEGEALQ-MSWVG  264 (278)
T ss_pred             EEEEEEehHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHhhccCceee-eEEEc
Confidence            4455554444444444443332 2233333333333333333333222 45566

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=87.56  E-value=0.36  Score=41.70  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=21.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3616          44 GGIAATVVFLIIIALFVWMICARSERRREPKK   75 (143)
Q Consensus        44 ~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~   75 (143)
                      ..|+.+|++||++++-+++-+.|+|++||+-|
T Consensus       315 SiIAIvvIVLIMvIIYLILRYRRKKKMkKKLQ  346 (353)
T TIGR01477       315 SIIAILIIVLIMVIIYLILRYRRKKKMKKKLQ  346 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence            33566777777777666667788888766543

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF15069 FAM163: FAM163 family

Probab=87.49  E-value=0.9  Score=34.58  Aligned_cols=21  Identities=52%  Similarity=0.760  Sum_probs=12.7

Q ss_pred             ceeeehhHHHHHHHHHHHHHH
Q psy3616          39 FAYIAGGIAATVVFLIIIALF   59 (143)
Q Consensus        39 ~~~ia~~i~~~Vl~lilIvll   59 (143)
                      .+.|++||.+.|++|.||+++
T Consensus         5 TvVItGgILAtVILLcIIaVL   25 (143)
T PF15069_consen    5 TVVITGGILATVILLCIIAVL   25 (143)
T ss_pred             eEEEechHHHHHHHHHHHHHH
Confidence            356777776666655555543

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=87.39  E-value=0.44  Score=36.58  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=9.0

Q ss_pred             eehhHHHHHHHHHHHHH
Q psy3616          42 IAGGIAATVVFLIIIAL   58 (143)
Q Consensus        42 ia~~i~~~Vl~lilIvl   58 (143)
                      +++.++++++++++|++
T Consensus        77 ~~~iivgvi~~Vi~Iv~   93 (179)
T PF13908_consen   77 ITGIIVGVICGVIAIVV   93 (179)
T ss_pred             eeeeeeehhhHHHHHHH
Confidence            44555556665555543

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=86.39  E-value=0.49  Score=25.45  Aligned_cols=17  Identities=24%  Similarity=0.774  Sum_probs=13.3

Q ss_pred             CCeeeecCCCc----CCCccc
Q psy3616          19 QPSCRCVGSFI----GPHCAQ   35 (143)
Q Consensus        19 ~~~C~C~~gy~----G~rCe~   35 (143)
                      ++.|.|++||.    |..|+.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            47899999987    566764

>PHA03281 envelope glycoprotein E; Provisional

Probab=86.30  E-value=1.1  Score=41.01  Aligned_cols=17  Identities=12%  Similarity=-0.175  Sum_probs=7.8

Q ss_pred             HHHHHHhhhcccccccc
Q psy3616          61 WMICARSERRREPKKLV   77 (143)
Q Consensus        61 ~~~~~r~rr~kk~k~~~   77 (143)
                      ....+|+|++++.|..+
T Consensus       578 ~~~~~~~~~~~~~~~~~  594 (642)
T PHA03281        578 TAKKFGHKAYRSDKAAY  594 (642)
T ss_pred             HHHHhhhheeecccccc
Confidence            33445555444444333

>KOG1225|consensus

Probab=86.14  E-value=0.71  Score=41.85  Aligned_cols=32  Identities=31%  Similarity=0.850  Sum_probs=22.5

Q ss_pred             CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      +|...|.++|.|+..     .|.|.++|+|..|+.+.
T Consensus       282 ~Cp~~cs~~g~~~~g-----~CiC~~g~~G~dCs~~~  313 (525)
T KOG1225|consen  282 VCPVDCSGGGVCVDG-----ECICNPGYSGKDCSIRR  313 (525)
T ss_pred             cCCcccCCCceecCC-----EeecCCCcccccccccc
Confidence            366667666655533     88888889998887654

>PF15102 TMEM154: TMEM154 protein family

Probab=85.78  E-value=0.42  Score=36.53  Aligned_cols=19  Identities=16%  Similarity=0.226  Sum_probs=9.6

Q ss_pred             eeehhHHHHHHHHHHHHHH
Q psy3616          41 YIAGGIAATVVFLIIIALF   59 (143)
Q Consensus        41 ~ia~~i~~~Vl~lilIvll   59 (143)
                      +|++-.+++|++|++++++
T Consensus        60 mIlIP~VLLvlLLl~vV~l   78 (146)
T PF15102_consen   60 MILIPLVLLVLLLLSVVCL   78 (146)
T ss_pred             EEeHHHHHHHHHHHHHHHh
Confidence            4555555555555544433

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=85.68  E-value=0.59  Score=28.41  Aligned_cols=25  Identities=32%  Similarity=0.666  Sum_probs=18.7

Q ss_pred             cEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616          10 GTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus        10 G~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .+|...   ..+|.|..+|+|++|+.-.
T Consensus        11 ~~C~~~---~G~C~C~~~~~G~~C~~C~   35 (49)
T PF00053_consen   11 QTCDPS---TGQCVCKPGTTGPRCDQCK   35 (49)
T ss_dssp             SSEEET---CEEESBSTTEESTTS-EE-
T ss_pred             CcccCC---CCEEeccccccCCcCcCCC
Confidence            377763   3799999999999999743

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=85.48  E-value=1.2  Score=32.97  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=17.0

Q ss_pred             hhHHHHHHHHHH-HHHHHHHHHHHhhhcccc
Q psy3616          44 GGIAATVVFLII-IALFVWMICARSERRREP   73 (143)
Q Consensus        44 ~~i~~~Vl~lil-Ivllv~~~~~r~rr~kk~   73 (143)
                      ..++++++.++. |+++++++.+.-||++|+
T Consensus        64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            335666666665 445566677776666554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function

Probab=85.46  E-value=0.94  Score=42.87  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=14.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616          44 GGIAATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        44 ~~i~~~Vl~lilIvllv~~~~~r~r   68 (143)
                      ++|.|..++|+|++|+++++++|+|
T Consensus       276 l~ILG~~~livl~lL~vLl~yCrrk  300 (807)
T PF10577_consen  276 LAILGGTALIVLILLCVLLCYCRRK  300 (807)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4455656666666666666655554

>KOG1217|consensus

Probab=84.52  E-value=1  Score=37.62  Aligned_cols=28  Identities=43%  Similarity=0.925  Sum_probs=25.7

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCcCCCc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFIGPHC   33 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rC   33 (143)
                      +|.|+|+|... .+.+.|.|+++|.|..|
T Consensus       279 ~c~~~~~C~~~-~~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  279 SCPNGGTCVNV-PGSYRCTCPPGFTGRLC  306 (487)
T ss_pred             ccCCCCeeecC-CCcceeeCCCCCCCCCC
Confidence            49999999998 66699999999999999

>KOG1217|consensus

Probab=84.09  E-value=0.86  Score=38.02  Aligned_cols=32  Identities=34%  Similarity=0.845  Sum_probs=28.5

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+|.|++.|... .+.+.|.|+.+|.|..|+..
T Consensus       177 ~~c~~~~~C~~~-~~~~~C~c~~~~~~~~~~~~  208 (487)
T KOG1217|consen  177 SPCQNGGTCVNT-GGSYLCSCPPGYTGSTCETT  208 (487)
T ss_pred             CCcCCCcccccC-CCCeeEeCCCCccCCcCcCC
Confidence            459999999999 66799999999999999875

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=83.30  E-value=1.1  Score=27.44  Aligned_cols=24  Identities=25%  Similarity=0.677  Sum_probs=18.6

Q ss_pred             EEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616          11 TCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus        11 ~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .|..   ..-+|.|..+++|++|+.-.
T Consensus        13 ~C~~---~~G~C~C~~~~~G~~C~~C~   36 (50)
T cd00055          13 QCDP---GTGQCECKPNTTGRRCDRCA   36 (50)
T ss_pred             cccC---CCCEEeCCCcCCCCCCCCCC
Confidence            3654   34689999999999999643

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=82.78  E-value=0.29  Score=35.99  Aligned_cols=14  Identities=43%  Similarity=0.482  Sum_probs=1.5

Q ss_pred             eehhHHHHHHHHHH
Q psy3616          42 IAGGIAATVVFLII   55 (143)
Q Consensus        42 ia~~i~~~Vl~lil   55 (143)
                      .|+||+.++++|.+
T Consensus        25 EAaGIGiL~VILgi   38 (118)
T PF14991_consen   25 EAAGIGILIVILGI   38 (118)
T ss_dssp             ---SSS--------
T ss_pred             HhccceeHHHHHHH
Confidence            45555444333333

>KOG3637|consensus

Probab=82.50  E-value=1.5  Score=42.71  Aligned_cols=27  Identities=15%  Similarity=0.282  Sum_probs=15.7

Q ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHH
Q psy3616          40 AYIAGGIAATVVFLIIIALFVWMICAR   66 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~~~~~r   66 (143)
                      |.|.+++++.+|+|+||++++|=+-+-
T Consensus       979 wiIi~svl~GLLlL~llv~~LwK~GFF 1005 (1030)
T KOG3637|consen  979 WIIILSVLGGLLLLALLVLLLWKCGFF 1005 (1030)
T ss_pred             eeehHHHHHHHHHHHHHHHHHHhcCcc
Confidence            455566666666666666666644333

>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences

Probab=81.52  E-value=2.9  Score=28.45  Aligned_cols=20  Identities=15%  Similarity=0.478  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHhhhccc
Q psy3616          53 LIIIALFVWMICARSERRRE   72 (143)
Q Consensus        53 lilIvllv~~~~~r~rr~kk   72 (143)
                      .+++|+.+|++.++++|+|.
T Consensus        13 f~ifVap~WL~lHY~sk~~~   32 (75)
T PF06667_consen   13 FMIFVAPIWLILHYRSKWKS   32 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            33444556777776655433

The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock

>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein

Probab=81.48  E-value=4  Score=29.10  Aligned_cols=6  Identities=33%  Similarity=0.678  Sum_probs=3.3

Q ss_pred             CCCccc
Q psy3616          95 APYAES  100 (143)
Q Consensus        95 ppy~e~  100 (143)
                      |+|.|.
T Consensus        85 P~Y~ev   90 (102)
T PF11669_consen   85 PSYSEV   90 (102)
T ss_pred             CCcHHh
Confidence            446664

This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=81.01  E-value=1.5  Score=38.10  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=15.5

Q ss_pred             eehh-HHHHHHHHHHHHHHHHHHHHHhh
Q psy3616          42 IAGG-IAATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        42 ia~~-i~~~Vl~lilIvllv~~~~~r~r   68 (143)
                      ||.+ |+++|++-.||.+|.|++..|.|
T Consensus       369 IaGIsvavvvvVgglvGfLcWwf~crgk  396 (397)
T PF03302_consen  369 IAGISVAVVVVVGGLVGFLCWWFICRGK  396 (397)
T ss_pred             eeeeeehhHHHHHHHHHHHhhheeeccc
Confidence            4443 34444444466678887777654

>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT

Probab=80.85  E-value=6.7  Score=28.30  Aligned_cols=6  Identities=17%  Similarity=-0.103  Sum_probs=2.5

Q ss_pred             ceeeec
Q psy3616          87 QVNFYY   92 (143)
Q Consensus        87 ~~N~~~   92 (143)
                      -.|..+
T Consensus        49 YgNL~~   54 (107)
T PF15330_consen   49 YGNLEL   54 (107)
T ss_pred             cccccc
Confidence            334444

>KOG1226|consensus

Probab=80.45  E-value=1.4  Score=41.46  Aligned_cols=24  Identities=29%  Similarity=0.872  Sum_probs=12.3

Q ss_pred             CCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616           6 CENKGTCVKDARGQPSCRCVGSFIGPHCA   34 (143)
Q Consensus         6 C~NgG~C~~~~~~~~~C~C~~gy~G~rCe   34 (143)
                      |.++|.|.=.     +|.|.+||+|+.|+
T Consensus       557 C~g~G~C~CG-----~CvC~~GwtG~~C~  580 (783)
T KOG1226|consen  557 CGGHGRCECG-----RCVCNPGWTGSACN  580 (783)
T ss_pred             cCCCCeEeCC-----cEEcCCCCccCCCC
Confidence            5555555433     45555555555544

>KOG3514|consensus

Probab=80.10  E-value=1.1  Score=44.00  Aligned_cols=33  Identities=27%  Similarity=0.842  Sum_probs=28.8

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCC-CcCCCccccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGS-FIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~g-y~G~rCe~~~   37 (143)
                      +.|.|+|.|..+ -..+.|.|... |+|++|....
T Consensus      1024 ~acanhG~c~q~-w~~~~c~csmtS~~Gp~C~d~g 1057 (1591)
T KOG3514|consen 1024 DACANHGVCIQQ-WNGIACDCSMTSYSGPRCNDPG 1057 (1591)
T ss_pred             hhhhccceeeee-ecceeeeccccccCCCccCCCc
Confidence            349999999999 77899999875 9999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	3e-04
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	4e-04

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37
           GYC N G C+  ++    +C CV  + G  C  + 
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS 37
           GYC + G C+  +A  + +C CV  +IG  C  + 
Sbjct: 11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.76
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.67
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.66
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.66
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.63
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.62
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.55
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	98.54
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.54
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	98.51
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	98.48
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	98.46
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	98.22
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.18
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.11
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.72
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.7
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	97.66
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.64
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.6
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.56
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.47
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.4
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.35
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.35
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	97.35
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.31
2vh0_B	134	Activated factor XA light chain; serine protease,	97.3
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	97.28
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.24
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	97.23
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	97.03
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.02
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	96.61
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	96.52
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	96.49
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	96.4
2bou_A	143	EGF-like module containing mucin-like hormone rece	96.24
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	96.07
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	95.97
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	95.89
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	95.81
2bou_A	143	EGF-like module containing mucin-like hormone rece	95.79
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.77
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.77
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	95.76
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.75
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	95.74
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.73
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.66
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	95.33
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	95.17
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.15
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	95.1
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	94.9
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	94.6
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	94.32
2k9j_B	43	Integrin beta-3; transmembrane complex, cell adhes	94.31
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	94.24
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	94.24
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.05
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.95
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	93.86
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	93.63
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	93.4
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	93.1
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	93.01
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	93.0
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	92.99
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	92.61
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	92.61
2vh0_B	134	Activated factor XA light chain; serine protease,	92.59
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	92.48
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	92.3
1aut_L	114	Activated protein C; serine proteinase, plasma cal	92.25
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	92.08
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	92.06
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	92.01
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	91.99
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	91.85
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	91.38
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	91.38
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	91.16
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	90.65
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	90.19
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	89.93
3v65_B	386	Low-density lipoprotein receptor-related protein;	89.38
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	89.33
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	88.81
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	87.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	86.68
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	85.14
2lk9_A	35	Bone marrow stromal antigen 2; membrane, micelle,	84.11
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	84.01
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	83.98
2ddu_A	387	Reelin; beta-jelly-roll, signaling protein; 2.05A	83.0
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	82.52
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	81.83
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	81.14

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.76  E-value=3.4e-09  Score=67.22  Aligned_cols=34  Identities=29%  Similarity=0.746  Sum_probs=28.9

Q ss_pred             CCCCCCCcEEEeC----CCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKD----ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~----~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+||+|||+|...    ..+.+.|.|++||+|++||..
T Consensus        13 s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~   50 (55)
T 3u7u_G           13 KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY   50 (55)
T ss_dssp             TTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence            4799999999642    257899999999999999975

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.67  E-value=1e-08  Score=61.74  Aligned_cols=33  Identities=30%  Similarity=0.819  Sum_probs=28.5

Q ss_pred             CCCCCCcEEEe-CCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +||+|+|+|+. ...+.+.|.|++||+|.+||..
T Consensus         9 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~   42 (45)
T 1a3p_A            9 GYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR   42 (45)
T ss_dssp             SCCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred             CCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence            49999999984 2367899999999999999964

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.66  E-value=1.5e-08  Score=58.92  Aligned_cols=32  Identities=31%  Similarity=0.661  Sum_probs=29.4

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      .+||+|+|+|+.. .+.+.|.|++||+|.+||.
T Consensus         8 ~~pC~ngg~C~~~-~~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            8 SNPCLNGGSCKDD-INSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             TCCCCTTCEEEEE-TTEEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCCEeEcC-CCceEeECCCCCcCCccCC
Confidence            4799999999988 8889999999999999984

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.66  E-value=6.7e-09  Score=65.12  Aligned_cols=35  Identities=34%  Similarity=0.931  Sum_probs=30.0

Q ss_pred             CCCCCCCcEEEe-CCCCCCeeeecCCCcCCCccccc
Q psy3616           3 KGYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .+||+|||+|+. ...+.+.|.|++||+|.+||...
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence            589999999984 23678999999999999999753

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.63  E-value=2e-08  Score=61.20  Aligned_cols=32  Identities=34%  Similarity=0.832  Sum_probs=28.0

Q ss_pred             CCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +||+| |+|... ..+.+.|.|++||+|.+||..
T Consensus        12 ~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A           12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            69999 899975 246899999999999999974

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.62  E-value=2.9e-08  Score=61.77  Aligned_cols=34  Identities=32%  Similarity=0.914  Sum_probs=29.2

Q ss_pred             CCCCCCcEEEe-CCCCCCeeeecCCCcCCCccccc
Q psy3616           4 GYCENKGTCVK-DARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~-~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      +||+|||+|+. ...+.+.|.|++||+|.+||...
T Consensus        12 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A           12 GYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccC
Confidence            39999999994 22778999999999999999854

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.55  E-value=1.6e-08  Score=62.80  Aligned_cols=33  Identities=33%  Similarity=0.684  Sum_probs=28.1

Q ss_pred             CCCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +||+|||+|+..   ..+.+.|.|+.||+|++||..
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            589999999963   145789999999999999964

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=98.54  E-value=4.5e-08  Score=60.99  Aligned_cols=33  Identities=24%  Similarity=0.756  Sum_probs=29.1

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ++||+|| +|... +.+.+.|+|++||+|+|||..
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCcccCCCce
Confidence            5799986 99986 567899999999999999975

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.54  E-value=4.3e-08  Score=62.81  Aligned_cols=35  Identities=29%  Similarity=0.755  Sum_probs=29.6

Q ss_pred             CCCCCCCcEEEeC----CCCCCeeeecCCCcCCCccccc
Q psy3616           3 KGYCENKGTCVKD----ARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~~----~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .+||+|||+|+..    ..+.+.|.|++||+|.+|+...
T Consensus        11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i   49 (63)
T 1hae_A           11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV   49 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEEC
T ss_pred             CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCc
Confidence            3799999999972    2578999999999999999653

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=98.51  E-value=2.9e-08  Score=61.72  Aligned_cols=33  Identities=39%  Similarity=0.869  Sum_probs=28.8

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +++|+| |+|... +.+.+.|+|+.||+|+|||..
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            589999 899755 577899999999999999975

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=98.48  E-value=3.2e-08  Score=63.09  Aligned_cols=32  Identities=34%  Similarity=0.747  Sum_probs=27.5

Q ss_pred             CCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616           5 YCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         5 ~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ||+|||+|...   ..+.+.|.|++||+|.+||..
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence            89999999842   255789999999999999975

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=98.46  E-value=8.8e-08  Score=59.62  Aligned_cols=32  Identities=22%  Similarity=0.760  Sum_probs=27.9

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~   35 (143)
                      +++|+| |+|... +.+.+.|+|+.+|+|+|||.
T Consensus        17 ~~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           17 QNFCIH-GECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             GGTCSS-SEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             hCcCCC-CEEEEecCCCCeeEECCCCcccccccc
Confidence            489998 599855 56789999999999999996

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=98.22  E-value=3.8e-07  Score=61.83  Aligned_cols=33  Identities=27%  Similarity=0.637  Sum_probs=28.0

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +++|+|| +|... +.+.+.|+|++||+|.|||..
T Consensus        45 ~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           45 KDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             TTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             cCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence            5899985 99765 457899999999999999964

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.18  E-value=6.1e-07  Score=57.82  Aligned_cols=33  Identities=21%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             CCCCCCC--cEEEeCCCCCCeeeecCCCc-CCCcccc
Q psy3616           3 KGYCENK--GTCVKDARGQPSCRCVGSFI-GPHCAQK   36 (143)
Q Consensus         3 ~~~C~Ng--G~C~~~~~~~~~C~C~~gy~-G~rCe~~   36 (143)
                      .+||.||  |+|+.. .+.+.|.|++||+ |.+|+..
T Consensus        16 snPC~nga~gtC~~~-~g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           16 SNPCGPEAAGTCKET-NSGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             HCSSCSSSCCEEEEC-SSEEEEECCTTEEEEECSSSC
T ss_pred             CCCCcCCCccccccC-CCceEeECCCCCccCCCCCCC
Confidence            3799999  999998 8889999999999 9999864

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.11  E-value=2e-06  Score=58.58  Aligned_cols=33  Identities=30%  Similarity=0.634  Sum_probs=29.2

Q ss_pred             CCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +||+|+|+|+.. ..+.+.|.|++||+|.+||..
T Consensus        54 ~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~   87 (91)
T 1tpg_A           54 PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID   87 (91)
T ss_dssp             CCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBC
T ss_pred             CCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcC
Confidence            689999999987 138899999999999999964

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.72  E-value=1.2e-05  Score=71.00  Aligned_cols=34  Identities=26%  Similarity=0.759  Sum_probs=31.0

Q ss_pred             CCCCCCCcEEEe-CCCCCCeeeec-CCCcCCCccccc
Q psy3616           3 KGYCENKGTCVK-DARGQPSCRCV-GSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~-~~~~~~~C~C~-~gy~G~rCe~~~   37 (143)
                      .+||+|||+|.. . .+.+.|.|+ .||+|.+||...
T Consensus         7 ~~PC~ngG~C~~~~-~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            7 YYPCQHQGICVRFG-LDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             GCCCCTTCEEEEET-TTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCCcCCCC-CCceEeeCCCCCcCCCCCCCCc
Confidence            579999999999 6 788999999 999999999864

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.70  E-value=1.9e-05  Score=55.38  Aligned_cols=34  Identities=32%  Similarity=0.883  Sum_probs=30.0

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      |...|.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus        18 C~~~C~~~g~C~~~-~~~y~C~C~~G~~G~~C~~~   51 (114)
T 1aut_L           18 CASLCCGHGTCIDG-IGSFSCDCRSGWEGRFCQRE   51 (114)
T ss_dssp             SSSTTTTSEEECCC-SSCCCEEECTTEESTTSCEE
T ss_pred             ccccCCCcCCCCCC-CCCcEeeCCCCCcCCCcCcC
Confidence            55569999999988 78899999999999999863

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=97.66  E-value=2.7e-05  Score=55.91  Aligned_cols=33  Identities=36%  Similarity=0.728  Sum_probs=27.7

Q ss_pred             CCCCCcEEEeCC-CCCC-eeeecCCCcCCCccccc
Q psy3616           5 YCENKGTCVKDA-RGQP-SCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C~~~~-~~~~-~C~C~~gy~G~rCe~~~   37 (143)
                      ||+|||+|+... .+.+ .|.|+.+|+|..||...
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~   36 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   36 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccC
Confidence            899999998762 2455 99999999999999753

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.64  E-value=2.9e-05  Score=57.05  Aligned_cols=33  Identities=30%  Similarity=0.633  Sum_probs=30.2

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+||.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus        53 ~~pC~n~g~C~~~-~~~y~C~C~~G~~G~~C~~~   85 (146)
T 1x7a_L           53 PNPCLNGGLCKDD-INSYECWCQVGFEGKNCELD   85 (146)
T ss_dssp             SCSSCTTCEEEEC-SSCEEEECCSSEESTTTCEE
T ss_pred             CCCCCCCCEeECC-CCCEEEecCCCCcCCcCCCC
Confidence            4789999999998 88899999999999999864

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.60  E-value=2.5e-05  Score=56.88  Aligned_cols=32  Identities=28%  Similarity=0.714  Sum_probs=29.7

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      .+||.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus        52 ~~pC~n~g~C~~~-~g~y~C~C~~G~~G~~C~~   83 (142)
T 2c4f_L           52 SSPCQNGGSCKDQ-LQSYICFCLPAFEGRNCET   83 (142)
T ss_dssp             GCCCCTTCEEEEE-TTEEEEECCTTEESTTSCE
T ss_pred             CCCcCCCCEEeCC-CCCEEeeCCCCccCCcccc
Confidence            3789999999998 8889999999999999996

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.56  E-value=2.1e-05  Score=69.94  Aligned_cols=35  Identities=29%  Similarity=0.773  Sum_probs=30.3

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeec-CCCcCCCccccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~~~   37 (143)
                      .+||+|||+|.....+.+.|.|+ .||+|.+||...
T Consensus         6 s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~~~   41 (587)
T 3nt1_A            6 SNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE   41 (587)
T ss_dssp             TCCCCTTCEEEEEETTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCCch
Confidence            57999999999642478999999 999999999853

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.47  E-value=7.8e-05  Score=55.20  Aligned_cols=33  Identities=36%  Similarity=0.728  Sum_probs=27.0

Q ss_pred             CCCCCcEEEeCC-CCCC-eeeecCCCcCCCccccc
Q psy3616           5 YCENKGTCVKDA-RGQP-SCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C~~~~-~~~~-~C~C~~gy~G~rCe~~~   37 (143)
                      ||+|||+|+... .+.+ .|.|+.||.|++|+...
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~   48 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   48 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccc
Confidence            899999997651 2334 89999999999999754

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.40  E-value=9.5e-05  Score=52.97  Aligned_cols=32  Identities=25%  Similarity=0.688  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ++|.|+|+|+.. .+.+.|.|++||+|++|+..
T Consensus        89 ~~C~~~g~C~~~-~g~~~C~C~~G~~G~~C~~~  120 (135)
T 2vj3_A           89 SPCLHNGRCLDK-INEFQCECPTGFTGHLCQVD  120 (135)
T ss_dssp             CCSTTTCEEEEC-SSCEEEECCTTEESSSSCEE
T ss_pred             CCcCCCCEeECC-CCCeEEECCCCCcCCccCcc
Confidence            567777777766 66677777777777777653

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.35  E-value=0.00013  Score=52.28  Aligned_cols=31  Identities=32%  Similarity=0.977  Sum_probs=28.8

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      ++|.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus        13 ~~C~~~g~C~~~-~g~~~C~C~~Gy~G~~C~~   43 (135)
T 2vj3_A           13 NPCEHAGKCINT-LGSFECQCLQGYTGPRCEI   43 (135)
T ss_dssp             CSSSTTCEEEEC-SSSEEEECCTTEESTTSCE
T ss_pred             CCCCCCCEeECC-CCCEEEECCCCCcCCcccc
Confidence            789999999998 8889999999999999985

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.35  E-value=2.9e-05  Score=60.23  Aligned_cols=33  Identities=30%  Similarity=0.806  Sum_probs=0.0

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+||.|+|+|+.. .+.+.|.|++||+|.+|+..
T Consensus        47 ~~pC~ngg~C~n~-~g~y~C~C~~Gf~G~~Ce~~   79 (195)
T 1nfu_B           47 TSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCELF   79 (195)
T ss_dssp             ----------------------------------
T ss_pred             CCCCCCCCEeECC-CCCeeEeCCCCceecccccc
Confidence            3689999999988 88899999999999999863

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=97.35  E-value=0.00017  Score=43.68  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             cceeeehhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          38 EFAYIAGGIAATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        38 ~~~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      ....|++++++.++++++|++++| +++|+|+.
T Consensus         9 ~~~~IA~gVVgGv~~~~ii~~~~~-~~~RRr~~   40 (44)
T 2ks1_B            9 KIPSIATGMVGALLLLLVVALGIG-LFMRRRHI   40 (44)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHH-HHHHTTTC
T ss_pred             CcceEEeehhHHHHHHHHHHHHHH-HHhhhhHh
Confidence            345688888777776666665544 44444433

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.31  E-value=0.00012  Score=52.29  Aligned_cols=34  Identities=38%  Similarity=0.873  Sum_probs=27.4

Q ss_pred             CCCCCCCcEEEeC-CCCCCeeeecCCCcCCCcccc
Q psy3616           3 KGYCENKGTCVKD-ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         3 ~~~C~NgG~C~~~-~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .+||.|+|+|+.. ..+.+.|.|++||+|++|+..
T Consensus         5 ~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~   39 (143)
T 4d90_A            5 PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSV   39 (143)
T ss_dssp             SCCCGGGCEEEC-----CCEEECCTTCCTTTTCSC
T ss_pred             CCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccC
Confidence            4789999999976 236799999999999999974

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.30  E-value=3.5e-05  Score=55.62  Aligned_cols=32  Identities=31%  Similarity=0.865  Sum_probs=0.0

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      .+||.|+|+|+.. .+.+.|.|++||+|.+|+.
T Consensus        47 ~~pC~n~g~C~~~-~~~y~C~C~~G~~G~~C~~   78 (134)
T 2vh0_B           47 TSPCQNQGKCKDG-LGEYTCTCLEGFEGKNCEL   78 (134)
T ss_dssp             ---------------------------------
T ss_pred             CCCCCCcCCcccC-CCCEEeeCCCCccCCcccc
Confidence            3689999999988 7889999999999999987

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=97.28  E-value=0.00018  Score=43.47  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=17.9

Q ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3616          41 YIAGGIAATVVFLIIIALFVWMICARSERRREPK   74 (143)
Q Consensus        41 ~ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k   74 (143)
                      .|++++++ ++ +++|+.++++++.|||+.+++|
T Consensus        13 ~Ia~~vVG-vl-l~vi~~l~~~~~~RRR~~~~kK   44 (44)
T 2jwa_A           13 SIISAVVG-IL-LVVVLGVVFGILIKRRQQKIRK   44 (44)
T ss_dssp             HHHHHHHH-HH-HHHHHHHHHHHHHHHHCSCCCC
T ss_pred             chHHHHHH-HH-HHHHHHHHHHhheehhhhhccC
Confidence            35555555 33 4445555666777766655443

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.24  E-value=8.5e-05  Score=59.63  Aligned_cols=30  Identities=23%  Similarity=0.660  Sum_probs=28.0

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe   34 (143)
                      +||.|+|+|... .+.+.|.|++||.|.+|+
T Consensus        11 ~pC~~~g~C~~~-~~~~~C~C~~g~~g~~C~   40 (317)
T 3h5c_B           11 QPCLHNGSCQDS-IWGYTCTCSPGYEGSNCE   40 (317)
T ss_dssp             CCCTTTCCCCCC-SSSCCCCCSSSCCSSSSC
T ss_pred             CCCCCCCEeECC-CCCeEEECCCCCcCCccc
Confidence            689999999988 788999999999999998

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=97.23  E-value=0.00022  Score=43.12  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=17.7

Q ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3616          40 AYIAGGIAATVVFLIIIALFVWMICARSERRRE   72 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~kk   72 (143)
                      ..|++++++.++++++|+++ +++++|+|++++
T Consensus        10 ~aIA~gVVgGv~~v~ii~~~-~~~~~RRRr~~~   41 (44)
T 2l2t_A           10 PLIAAGVIGGLFILVIVGLT-FAVYVRRKSIKK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHTTCSSC
T ss_pred             ceEEEeehHHHHHHHHHHHH-HHHHhhhhhhhh
Confidence            34777776666655555544 445555444443

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=97.03  E-value=0.00035  Score=58.14  Aligned_cols=33  Identities=36%  Similarity=0.840  Sum_probs=29.7

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecC-CCcCCCccccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVG-SFIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~-gy~G~rCe~~~   37 (143)
                      +||.|+|+|... .+.+.|.|+. +|.|++|+...
T Consensus       191 ~pC~n~g~C~~~-~~~~~C~C~~~~~~G~~C~~~~  224 (410)
T 3asi_A          191 DSCSNQGVCLQQ-WDGFSCDCSMTSFSGPLCNDPG  224 (410)
T ss_dssp             TSSSTTCEEEEC-SSSEEEECTTTSEESTTSCEEC
T ss_pred             ccCCCCCEecCC-CCCceEeccCCcccCCCCCCCc
Confidence            689999999998 7889999996 99999999643

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.02  E-value=0.00024  Score=50.67  Aligned_cols=32  Identities=34%  Similarity=0.690  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEeCC------CCCCeeeecCCCcCCCccc
Q psy3616           4 GYCENKGTCVKDA------RGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~------~~~~~C~C~~gy~G~rCe~   35 (143)
                      ++|.|+|+|+...      .+.+.|.|++||+|.+|+.
T Consensus        58 ~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~   95 (143)
T 4d90_A           58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH   95 (143)
T ss_dssp             CCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCE
T ss_pred             CCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCccc
Confidence            5799999999531      3679999999999999984

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=96.61  E-value=0.00078  Score=44.47  Aligned_cols=30  Identities=30%  Similarity=0.917  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc--CCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI--GPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~--G~rCe~   35 (143)
                      ++|.| |+|+.. .+.+.|.|++||.  |..|+.
T Consensus        12 ~~C~~-g~C~n~-~g~y~C~C~~Gy~~~g~~C~d   43 (82)
T 1emn_A           12 DVCKH-GQCINT-DGSYRCECPFGYILAGNECVD   43 (82)
T ss_dssp             TSCSS-SEECCC-SSCCCEECCTTEEEETTEEEE
T ss_pred             CCcCC-CEEEec-CCCEEEECCCCeECCCCccCC
Confidence            68986 899988 8899999999997  888863

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=96.52  E-value=0.0014  Score=44.10  Aligned_cols=36  Identities=11%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             CCCccccccceeeehhHHHHHHHHHHHHHHHHHHHH
Q psy3616          30 GPHCAQKSEFAYIAGGIAATVVFLIIIALFVWMICA   65 (143)
Q Consensus        30 G~rCe~~~~~~~ia~~i~~~Vl~lilIvllv~~~~~   65 (143)
                      |+.|-.....+.|+++++++++++.++++++|-++.
T Consensus         1 ~~~Cp~~~n~~~Iv~gvi~gilliGllllliwk~~~   36 (79)
T 2knc_B            1 GAMGSKGPDILVVLLSVMGAILLIGLAALLIWKLLI   36 (79)
T ss_dssp             CCSSCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556755555566777777777777777766665443

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=96.49  E-value=0.0012  Score=54.33  Aligned_cols=30  Identities=43%  Similarity=1.111  Sum_probs=17.9

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      |.++|.|+|+|...    +.|.|++||+|++|+.
T Consensus       151 C~~~C~~~G~C~~~----~~C~C~~G~~G~~C~~  180 (324)
T 2ygq_A          151 CPGGCRNGGFCNER----RICECPDGFHGPHCEK  180 (324)
T ss_dssp             CSSCCCSSCEECTT----SCEECCTTEESSSSCE
T ss_pred             CCCCCCCCCEECCC----CeEECCCCCcCCCCCC
Confidence            55566666666532    5566666666666654

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=96.40  E-value=0.0017  Score=61.50  Aligned_cols=33  Identities=36%  Similarity=0.864  Sum_probs=29.8

Q ss_pred             CCCCCCcEEEeCCCCCCeeeec-CCCcCCCccccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQKS   37 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~~~   37 (143)
                      +||.|+|+|... .+.+.|.|+ ++|+|+.|+...
T Consensus      1023 ~pC~ngG~C~~~-~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1023 DSCSNQGVCLQQ-WDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             TSSSSSCEEEEE-TTEEEEECTTSSCBSTTSCBCC
T ss_pred             CcCCCCCEeCCC-CCCCEEECCCCCCCCCCccCCC
Confidence            689999999988 778999999 699999999764

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=96.24  E-value=0.0018  Score=46.32  Aligned_cols=27  Identities=30%  Similarity=0.835  Sum_probs=24.2

Q ss_pred             CCCCCCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616           1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGP   31 (143)
Q Consensus         1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~   31 (143)
                      .|.++|.|+|+|+..    +.|.|++||+|.
T Consensus         4 ~C~~~C~~~~~C~~~----~~C~C~~G~~g~   30 (143)
T 2bou_A            4 GCARWCPQDSSCVNA----TACRCNPGFSSF   30 (143)
T ss_dssp             CCCTTCCTTEEESSS----SCEEECTTEECS
T ss_pred             CCcCcCCCCCEEcCC----CEEeCCCCCcCc
Confidence            488999999999865    899999999983

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=96.07  E-value=0.0033  Score=51.58  Aligned_cols=30  Identities=37%  Similarity=0.868  Sum_probs=18.1

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      |..+|.|+|+|...    ..|.|++||+|.+|+.
T Consensus       183 C~~~C~~~G~C~~~----~~C~C~~G~~G~~C~~  212 (324)
T 2ygq_A          183 CTPRCMNGGLCVTP----GFCICPPGFYGVNCDK  212 (324)
T ss_dssp             SSSCCCTTCEECSS----CCEECCTTCBTTTTCB
T ss_pred             CCCCCCCCCEEcCC----CEEeCCCCccCCCccc
Confidence            45566666776543    4566666666666654

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=95.97  E-value=0.00031  Score=57.00  Aligned_cols=34  Identities=6%  Similarity=-0.058  Sum_probs=30.9

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      .+||+|+|+|+.. ...++|.|+.||+|++|+...
T Consensus       104 s~pC~ngG~C~~~-~~sy~C~C~~Gf~G~~Ce~~~  137 (267)
T 4fbr_A          104 SIKSNDGGKTLTG-TTTYNGEGPIGFKSEVTDGDT  137 (267)
T ss_dssp             EEECSSTTSEEEE-EEEETTSCCEEEEEEECCCCE
T ss_pred             CCCCCCCCEEecC-CccEEeeCCCCccccCCCCCc
Confidence            4689999999998 888999999999999999864

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=95.89  E-value=0.0035  Score=46.52  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=28.1

Q ss_pred             CCCCCcEEEeC-CCCCCee-eecCCCcCCCccccc
Q psy3616           5 YCENKGTCVKD-ARGQPSC-RCVGSFIGPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C~~~-~~~~~~C-~C~~gy~G~rCe~~~   37 (143)
                      ||.|+|+|... ..+..+| .|+.+|+|++||.-.
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~   36 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCD   36 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEEC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCC
Confidence            79999999987 2367899 799999999999743

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=95.81  E-value=0.00032  Score=56.96  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=31.3

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      |+.+|.|+|+|+.. .+.+.|.|+.||+|.+||...
T Consensus        36 ~~~~c~ngG~C~~g-~~~y~C~Cp~Gf~G~~Ce~ni   70 (267)
T 4fbr_A           36 LDIKSDDGGKTLKG-TMTYNGEGPIGFRGTLSSANN   70 (267)
T ss_dssp             EEEECSSTTSEEEE-EEEETTSCCEEEEEEECSTTE
T ss_pred             CCCCcCCCCeecCC-CCCeEEeCCCCcccccccccc
Confidence            45689999999998 888999999999999999754

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=95.79  E-value=0.0046  Score=44.18  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=27.6

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      +|.|+++|+.. .+.+.|.|++||+|..|+.
T Consensus        54 ~C~~~~~C~n~-~g~y~C~C~~Gy~g~~~~~   83 (143)
T 2bou_A           54 SCGKFSDCWNT-EGSYDCVCSPGYEPVSGAK   83 (143)
T ss_dssp             CCCTTEEEEEC-SSCEEEEECTTEEETTCCS
T ss_pred             CCCCCCEEEcC-CCCeEeECCCCcccCcCcc
Confidence            79999999998 8899999999999998765

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.77  E-value=0.0028  Score=47.30  Aligned_cols=31  Identities=19%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCC---Cccc
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGP---HCAQ   35 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~---rCe~   35 (143)
                      .+||.|+ +|+.. .+.++|.|++||+|.   +|+.
T Consensus        10 ~~pC~ng-~C~~~-~g~~~C~C~~G~~g~~~~~C~~   43 (186)
T 1z1y_A           10 DTICXNG-QLVQM-SNHFXCMCNEGLVHLSENTCEE   43 (186)
T ss_dssp             TCCCBTE-EEEEC-SSCEEEEECTTEEEEETTEEEE
T ss_pred             CCCCCCC-EeECC-CCCeEeECCCCCccCCCCccCC
Confidence            5799975 99998 788999999999988   7863

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.77  E-value=0.0017  Score=43.22  Aligned_cols=28  Identities=21%  Similarity=0.693  Sum_probs=24.9

Q ss_pred             CCCCcEEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616           6 CENKGTCVKDARGQPSCRCVGSFI----GPHCAQ   35 (143)
Q Consensus         6 C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~   35 (143)
                      | |+|+|+.. .+.+.|.|++||+    |..|+.
T Consensus        13 C-~~~~C~n~-~g~y~C~C~~G~~~~~~g~~C~d   44 (87)
T 1z6c_A           13 C-GTAVCKNI-PGDFECECPEGYRYNLKSKSCED   44 (87)
T ss_dssp             B-TTSSCCCB-TTBCCCSSSTTCEEETTTTEEEC
T ss_pred             C-CCCEeECC-CCCEEEECCCCceECCCCCcCCC
Confidence            8 78999988 8899999999999    888863

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=95.76  E-value=0.005  Score=58.24  Aligned_cols=31  Identities=26%  Similarity=0.799  Sum_probs=28.7

Q ss_pred             CCCCCCcEEEeCCCCCCeeeec-CCCcCCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCV-GSFIGPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~-~gy~G~rCe~   35 (143)
                      +||.|+|+|... ...+.|.|+ .+|.|+.|+.
T Consensus       625 ~pC~ngg~C~~~-~~~~~C~C~~~g~~G~~C~~  656 (1245)
T 3qcw_A          625 NPCKNNGMCRDG-WNRYVCDCSGTGYLGRSCER  656 (1245)
T ss_dssp             CCCCTTCEEEEC-SSSEEEECTTTTEESTTSCE
T ss_pred             cCCCCCCEEeCC-CCCeEEECCCCCcccccCcc
Confidence            689999999988 788999999 7999999986

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.75  E-value=0.0015  Score=56.01  Aligned_cols=29  Identities=31%  Similarity=0.880  Sum_probs=24.1

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      |..+|.| |+|...    ..|.|++||+|.+|+.
T Consensus       395 C~~~C~n-G~C~~~----~~C~C~~G~~G~~C~~  423 (463)
T 2wg3_C          395 CSRLCRN-GYCTPT----GKCCCSPGWEGDFCRT  423 (463)
T ss_dssp             HHHHCCS-EEECTT----SCEEECTTEESTTSCE
T ss_pred             ccCCCCC-CccCCC----CeECCCCCcCCCcCCc
Confidence            5667997 899855    5899999999999974

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=95.74  E-value=0.0038  Score=44.90  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=25.1

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCA   34 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe   34 (143)
                      +||.| |+|+.. .+++.|.|++||+|..|.
T Consensus        10 ~pC~n-g~C~n~-~g~y~C~C~~G~~g~~~~   38 (147)
T 2w86_A           10 SPCIN-GVCKNS-PGSFICECSSESTLDPTK   38 (147)
T ss_dssp             CCSBT-SEEEEE-TTEEEEECCTTEEECTTS
T ss_pred             CCCCC-CEeECC-CCCEEeECCCCcccCCCC
Confidence            68997 699999 889999999999987543

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.73  E-value=0.0027  Score=47.36  Aligned_cols=31  Identities=16%  Similarity=0.522  Sum_probs=26.9

Q ss_pred             CCCCCCCcEEEeCCC-----CCCeeeecCCCcCCCcc
Q psy3616           3 KGYCENKGTCVKDAR-----GQPSCRCVGSFIGPHCA   34 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~-----~~~~C~C~~gy~G~rCe   34 (143)
                      .++|.|+|+|+.. .     +.+.|.|++||+|..|+
T Consensus        53 ~~~C~~~~~C~~~-~~~~~~g~y~C~C~~G~~g~~~~   88 (186)
T 1z1y_A           53 GXACGEFGQCIEN-PDPAQVNMYXCGCIEGYTLXEDT   88 (186)
T ss_dssp             TSEEETTEEEEEC-SSTTSSCSEEEEECTTEEEETTE
T ss_pred             CCCCCCCCEeecC-CCCcCCCCEECCCCCCCccCCCC
Confidence            3679999999998 5     89999999999998653

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.66  E-value=0.0062  Score=39.99  Aligned_cols=28  Identities=32%  Similarity=0.567  Sum_probs=24.4

Q ss_pred             CCCCCCCcEEEeCCCCCCeeeecCCCcCCC
Q psy3616           3 KGYCENKGTCVKDARGQPSCRCVGSFIGPH   32 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C~C~~gy~G~r   32 (143)
                      .++|.| |+|+.. .+.+.|.|++||.|..
T Consensus        50 ~~~C~~-~~C~n~-~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           50 GNPCGN-GTCKNV-IGGFECTCEEGFEPGP   77 (82)
T ss_dssp             CCTTSS-SCEEEC-SSSEEECCSSSSCCCS
T ss_pred             CCCCCC-CEeECC-CCCEEeECCCCeEeCC
Confidence            368987 699999 8899999999999864

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=95.33  E-value=0.0029  Score=54.39  Aligned_cols=29  Identities=31%  Similarity=0.768  Sum_probs=0.0

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ++|.|||+|... .   .|.|++||+|..|+..
T Consensus       371 ~~C~ngg~C~~~-~---~C~C~~G~~G~~Ce~c  399 (426)
T 3zyj_B          371 LHCQNGGTCHNN-V---RCLCPAAYTGILCEKL  399 (426)
T ss_dssp             ---------------------------------
T ss_pred             ccCCCCCCcCCC-C---CCcCCCCCcCCCCcCC
Confidence            589999999977 3   9999999999999874

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=95.17  E-value=0.0087  Score=50.85  Aligned_cols=28  Identities=32%  Similarity=0.873  Sum_probs=25.0

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      +|.|+|+|..   ....|.|++||+|++|+.
T Consensus       204 ~C~~~G~C~~---~~g~C~C~~G~~G~~Ce~  231 (423)
T 2gy5_A          204 ACMNNGVCHE---DTGECICPPGFMGRTCEK  231 (423)
T ss_dssp             CCCTTCEECT---TTCCEECCTTEESTTSCE
T ss_pred             CCCCCCEEEC---CCCcEeCCCCccCCCccc
Confidence            8999999985   347999999999999996

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.15  E-value=0.0061  Score=40.24  Aligned_cols=29  Identities=28%  Similarity=0.803  Sum_probs=24.6

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCc-----CCCccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFI-----GPHCAQ   35 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~-----G~rCe~   35 (143)
                      +|.| |+|+.. .+.+.|.|++||.     |..|+.
T Consensus        12 ~C~~-g~C~n~-~g~y~C~C~~Gy~~~~~~g~~C~d   45 (86)
T 1lmj_A           12 LCGR-GQCVNT-PGDFECKCDEGYESGFMMMKNCMD   45 (86)
T ss_dssp             TTTT-SCEEEE-TTEEEECCCSSEEECTTTSSSEEE
T ss_pred             CCCC-CEEECC-CCCEEeeCCCCcCccCCCCCccCC
Confidence            4976 599999 8899999999998     777863

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=95.10  E-value=0.014  Score=36.55  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3616          40 AYIAGGIAATVVFLIIIALFVWMICARSERRR   71 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~k   71 (143)
                      +.|.+++.+.++++++++++.|-+-+.+|+++
T Consensus        10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~   41 (54)
T 2l8s_A           10 WVILLSAFAGLLLLMLLILALWKIGFFKRPLK   41 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence            44555555566666666666665555444443

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.04  E-value=0.012  Score=52.86  Aligned_cols=32  Identities=31%  Similarity=0.653  Sum_probs=27.1

Q ss_pred             CCCCCCCcEEEeCCCCCCee-eecCCCcC--CCcc
Q psy3616           3 KGYCENKGTCVKDARGQPSC-RCVGSFIG--PHCA   34 (143)
Q Consensus         3 ~~~C~NgG~C~~~~~~~~~C-~C~~gy~G--~rCe   34 (143)
                      .+||.|+|+|+....+.++| .|++||+|  .+|+
T Consensus         8 ~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce   42 (634)
T 1yo8_A            8 SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE   42 (634)
T ss_dssp             GCCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCC
T ss_pred             CCCCCCCCEEecCCCCCeECCcCCCccCCCCCCcc
Confidence            47999999999983345999 99999999  6776

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=94.90  E-value=0.012  Score=42.92  Aligned_cols=30  Identities=30%  Similarity=0.690  Sum_probs=27.0

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc----CCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~   35 (143)
                      +||. +|+|+.. .++++|.|++||+    |.+|+.
T Consensus        10 ~~C~-~~~C~n~-~gsy~C~C~~Gy~~~~~g~~C~d   43 (162)
T 1uzk_A           10 TTCI-SGNCVNT-PGSYICDCPPDFELNPTRVGCVD   43 (162)
T ss_dssp             TSSB-TSEEEEE-TTEEEEECCTTCEECTTSSBEEC
T ss_pred             CCCC-CCEeECC-CCCEEEeCCCCCeECCCCCcccC
Confidence            6897 5899999 8899999999998    899984

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=94.60  E-value=0.023  Score=48.24  Aligned_cols=31  Identities=19%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      |.++|.|+|+|.   .+.+.|.|++||+|.+|+.
T Consensus       248 ~~~~C~~~g~C~---~~~~~C~C~~G~~G~~C~~  278 (423)
T 2gy5_A          248 GQEGCKSYVFCL---PDPYGCSCATGWKGLQCNE  278 (423)
T ss_dssp             STTTTTTCCEEE---TTTTEEECCBTCBSGGGCB
T ss_pred             CCCCCCCCCEEC---CCCCeEEeCCCcccccccC
Confidence            346788889995   4568999999999999986

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=94.32  E-value=0.019  Score=51.50  Aligned_cols=31  Identities=19%  Similarity=0.582  Sum_probs=28.0

Q ss_pred             CCCCCCcEEEeCCC----CCCeeeecCCCcC--CCccc
Q psy3616           4 GYCENKGTCVKDAR----GQPSCRCVGSFIG--PHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~----~~~~C~C~~gy~G--~rCe~   35 (143)
                      ++|.|+++|+.. .    +.+.|.|+.||+|  .+|+.
T Consensus       110 ~pC~~~~~Cvnt-~~~~~GsY~C~C~~Gy~GdG~~Ce~  146 (634)
T 1yo8_A          110 HNCHKHAECIYL-GHFSDPMYKCECQTGYAGDGLICGE  146 (634)
T ss_dssp             CCCCTTEEEEEC-CTTCSSSEEEEECTTEEESSSSEEE
T ss_pred             cccccCcccccc-ccccccceeeeccCCccccCccccc
Confidence            589999999998 5    8999999999998  78985

>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A

Probab=94.31  E-value=0.035  Score=33.03  Aligned_cols=38  Identities=11%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             ccccccceeeehhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3616          33 CAQKSEFAYIAGGIAATVVFLIIIALFVWMICARSERR   70 (143)
Q Consensus        33 Ce~~~~~~~ia~~i~~~Vl~lilIvllv~~~~~r~rr~   70 (143)
                      |-.+.+...|+++++++++++.++++++|-++.+-+-|
T Consensus         3 Cp~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Dr   40 (43)
T 2k9j_B            3 SPKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDR   40 (43)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehh
Confidence            43333444566667777777777777777666554433

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=94.24  E-value=0.019  Score=41.35  Aligned_cols=32  Identities=34%  Similarity=0.759  Sum_probs=27.2

Q ss_pred             CCCCCc---EEEeCCCC-CCeeeecCCCc----CCCccccc
Q psy3616           5 YCENKG---TCVKDARG-QPSCRCVGSFI----GPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG---~C~~~~~~-~~~C~C~~gy~----G~rCe~~~   37 (143)
                      +|.|++   +|+.. .+ .+.|.|++||+    |.+|+...
T Consensus        92 ~~~~~~C~~~C~~~-~g~~y~C~C~~Gy~l~~dG~~C~~~~  131 (142)
T 2c4f_L           92 VNENGGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTV  131 (142)
T ss_dssp             TTGGGGCSSEEECC-TTSCCEEECCTTEEECTTSSCEEESS
T ss_pred             cCCCCCccCEeECC-CCCCEEEECCCCceECCCCCCCCCCC
Confidence            566777   99988 77 89999999999    99998753

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=94.24  E-value=0.025  Score=33.66  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcC
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIG   30 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G   30 (143)
                      .+|.  ++|+.. .+++.|.|+.||.+
T Consensus        20 ~~C~--~~C~n~-~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           20 PQCQ--HLCHNY-VGGYFCSCRPGYEL   43 (53)
T ss_dssp             CTTS--SEEEEE-TTEEEEECSTTCEE
T ss_pred             CCCC--CEeECC-CCCeEEECCCCCeE
Confidence            5787  499999 89999999999984

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.05  E-value=0.023  Score=46.87  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc---CCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI---GPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~---G~rCe~   35 (143)
                      ++|.++++|... .+++.|.|++||.   |..|+.
T Consensus         6 ~~~~c~~~C~~~-~~~y~C~C~~G~~~~~~~~C~d   39 (400)
T 3p5b_L            6 NNGGCSHVCNDL-KIGYECLCPDGFQLVAQRRCED   39 (400)
T ss_dssp             TGGGCSSEEEEC-SSSEEEECCTTEEECSSSCEEE
T ss_pred             CCCCCCCEeECC-CCCeEEECCCCCCcCCCCcccC
Confidence            468888999998 8889999999998   888864

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=93.95  E-value=0.062  Score=32.20  Aligned_cols=32  Identities=25%  Similarity=0.184  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3616          45 GIAATVVFLIIIALFVWMICARSERRREPKKL   76 (143)
Q Consensus        45 ~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~   76 (143)
                      +|++.|+.-+++++++....+-..|||+++++
T Consensus        12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             eEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence            35666666555555666889999999888764

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=93.86  E-value=0.078  Score=31.80  Aligned_cols=33  Identities=33%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3616          44 GGIAATVVFLIIIALFVWMICARSERRREPKKL   76 (143)
Q Consensus        44 ~~i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~   76 (143)
                      .+|++.|+.-+++++++....+-..|||+++++
T Consensus        10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A           10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK   42 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            346677776677777788888999989888765

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=93.63  E-value=0.031  Score=45.67  Aligned_cols=31  Identities=26%  Similarity=0.683  Sum_probs=27.9

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc--CCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI--GPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~--G~rCe~   35 (143)
                      .+|..++.|++. .+++.|.|..||.  |..|..
T Consensus        13 ~~C~~~a~C~Nt-~Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A           13 HQCSVHAECRDY-ATGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             GGSCTTEEEEEC-SSCEEEEECTTEEECSSSEEE
T ss_pred             CCCCCCCEeEcC-CCCeEEEcCCCCCCCCCcCCC
Confidence            579988999999 9999999999998  778974

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=93.40  E-value=0.023  Score=39.32  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             EEEeCCCCCCeeeecCCCcC---CCccc
Q psy3616          11 TCVKDARGQPSCRCVGSFIG---PHCAQ   35 (143)
Q Consensus        11 ~C~~~~~~~~~C~C~~gy~G---~rCe~   35 (143)
                      +|+.. .+.+.|.|++||.|   ..|+.
T Consensus        42 ~C~n~-~g~y~C~C~~Gy~g~~g~~C~d   68 (107)
T 2w2n_E           42 VCNDL-KIGYECLCPDGFQLVAQRRCED   68 (107)
T ss_dssp             EEECC-SBSCEEECCTTCEEETTTEEEC
T ss_pred             EeEeC-CCCeEEECCCCccccCCCcccc
Confidence            89988 88999999999998   78884

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=93.10  E-value=0.017  Score=52.24  Aligned_cols=32  Identities=25%  Similarity=0.585  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEeCCCCCCe---eeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPS---CRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~---C~C~~gy~G~rCe~~   36 (143)
                      +||.|+++|... .+.+.   |.|.+||+|.+|+..
T Consensus       440 ~pc~n~~~C~~g-~G~~~~G~C~C~~Gy~G~~Ce~~  474 (690)
T 3fcs_B          440 QAEPNSHRCNNG-NGTFECGVCRCGPGWLGSQCECS  474 (690)
T ss_dssp             TCCTTCTTTTTT-SEEEETTEEEECTTCCSSSSCCS
T ss_pred             CCCCCCCcccCC-CCeEeCCceEeCCCccCCceeec
Confidence            578999999754 55555   999999999999865

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=93.01  E-value=0.11  Score=33.88  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy3616          46 IAATVVFLIIIALFVWMICARSERRREPKKLVA   78 (143)
Q Consensus        46 i~~~Vl~lilIvllv~~~~~r~rr~kk~k~~~~   78 (143)
                      ++|.++.+++++.+.+++|.|.++|+++.+.++
T Consensus        13 vlGg~~~lll~~glcI~ccvkcrhRrrqAeRMS   45 (70)
T 2klu_A           13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMS   45 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSS
T ss_pred             HHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            444444444444444455665555555544444

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=93.00  E-value=0.039  Score=32.81  Aligned_cols=26  Identities=19%  Similarity=0.547  Sum_probs=12.5

Q ss_pred             cceeeehhHHHHHHHHHHHHHHHHHH
Q psy3616          38 EFAYIAGGIAATVVFLIIIALFVWMI   63 (143)
Q Consensus        38 ~~~~ia~~i~~~Vl~lilIvllv~~~   63 (143)
                      ..+.|.+++.+.++++.+++++.|-+
T Consensus         9 p~wiIi~s~l~GLllL~li~~~LwK~   34 (42)
T 2k1a_A            9 PIWWVLVGVLGGLLLLTILVLAMWKV   34 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33445555555555555555544533

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=92.99  E-value=0.056  Score=49.92  Aligned_cols=34  Identities=26%  Similarity=0.599  Sum_probs=30.3

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCCCcCCCccccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKS   37 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~~   37 (143)
                      |. ||.|+|+|... .....|.|+++|.|..|+...
T Consensus       502 C~-PC~ngg~~~l~-g~~C~C~C~~g~~G~~Ce~~~  535 (913)
T 3t5o_A          502 CA-PCPNNGRPTLS-GTECLCVCQSGTYGENCEKQS  535 (913)
T ss_dssp             SC-CBTTTBEEEEE-TTEEEEECCTTBCSTTSCCBC
T ss_pred             CC-CCCCCCEeecC-CCceEEEccCCccccCccCcc
Confidence            55 99999999988 778899999999999999854

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=92.61  E-value=0.075  Score=34.82  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CCCCcEEEeCCCCCCeeeecCCCcCCC
Q psy3616           6 CENKGTCVKDARGQPSCRCVGSFIGPH   32 (143)
Q Consensus         6 C~NgG~C~~~~~~~~~C~C~~gy~G~r   32 (143)
                      |. +|+|+.. .+++.|.|++||+|..
T Consensus        56 C~-~~~C~n~-~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A           56 CR-GGVCHNT-EGSYRCECPPGHQLSP   80 (86)
T ss_dssp             TT-TSEEEEE-TTEEEEESCTTSCCCS
T ss_pred             CC-CCEeEcC-CCCEEEECcCCcccCC
Confidence            66 5899999 8999999999999854

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=92.61  E-value=0.099  Score=32.65  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=15.5

Q ss_pred             eeeehhHHHHHHHHHHHHHHHHHHHHHh
Q psy3616          40 AYIAGGIAATVVFLIIIALFVWMICARS   67 (143)
Q Consensus        40 ~~ia~~i~~~Vl~lilIvllv~~~~~r~   67 (143)
                      +.|.+++.+.++++.++++++|-+-+.+
T Consensus        13 wiIi~svl~GLllL~li~~~LwK~GFFk   40 (54)
T 2knc_A           13 WWVLVGVLGGLLLLTILVLAMWKVGFFK   40 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence            4455555555555666666666554443

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=92.59  E-value=0.04  Score=39.26  Aligned_cols=29  Identities=21%  Similarity=0.749  Sum_probs=24.7

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK   36 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~   36 (143)
                      +|.+  +|+.. .+.+.|.|++||+    |.+|+..
T Consensus        90 ~C~~--~C~~~-~g~y~C~C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           90 DCDQ--FCHEE-QNSVVCSCARGYTLADNGKACIPT  122 (134)
T ss_dssp             GCSS--EEEEE-TTEEEEECCTTEEECTTSSCEEES
T ss_pred             CCCC--EeECC-CCCEEEECCCCcEECCCCCccCcC
Confidence            4554  99988 8899999999999    9999864

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=92.48  E-value=0.062  Score=41.88  Aligned_cols=28  Identities=32%  Similarity=0.735  Sum_probs=24.1

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ..|.|+|+|..     ..|.|.+||+|.+||-.
T Consensus        96 ~~Csg~G~C~~-----g~C~C~~G~~G~~Cec~  123 (217)
T 2p28_B           96 SLCHGKGFLEC-----GICRCDTGYIGKNCECQ  123 (217)
T ss_dssp             CTTTTSEEEET-----TEEEECTTEESTTSCEE
T ss_pred             CccCCCceEEC-----CEEECCCCccCCccccc
Confidence            46889999983     48999999999999954

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=92.30  E-value=0.044  Score=42.12  Aligned_cols=30  Identities=20%  Similarity=0.729  Sum_probs=25.7

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCc----CCCccccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFI----GPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~~   37 (143)
                      +|.+  +|+.. .+.+.|.|++||+    |.+|+...
T Consensus        90 ~C~~--~C~n~-~gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           90 DCDQ--FCHEE-QNSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             GCSS--EEEEE-TTEEEEECCTTEEECTTSSCEEESS
T ss_pred             CCCC--EeECC-CCCeEEECCCCceeCCCCCccccCC
Confidence            5664  99988 8899999999999    99998753

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=92.25  E-value=0.071  Score=36.77  Aligned_cols=25  Identities=20%  Similarity=0.606  Sum_probs=21.5

Q ss_pred             EEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616          11 TCVKDARGQPSCRCVGSFI----GPHCAQK   36 (143)
Q Consensus        11 ~C~~~~~~~~~C~C~~gy~----G~rCe~~   36 (143)
                      +|+.. .+.+.|.|+.||+    |..|+..
T Consensus        67 ~C~n~-~g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           67 YCLEE-VGWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             EEEEC-SSSEEEECCTTEEECTTSSCEEEC
T ss_pred             EeECC-CCCEEeECCCCeeECCCCCccCcC
Confidence            99998 8899999999999    5677653

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=92.08  E-value=0.093  Score=47.40  Aligned_cols=27  Identities=30%  Similarity=0.715  Sum_probs=23.7

Q ss_pred             CCCCCCcEEEeCCCCCCeeee-cCCCcCCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRC-VGSFIGPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C-~~gy~G~rCe~   35 (143)
                      .+|.|+|+|..     ..|.| .+||+|++|+.
T Consensus       573 ~~C~~~G~C~~-----g~C~C~~~Gy~G~~Ce~  600 (690)
T 3fcs_B          573 LLCSGRGKCEC-----GSCVCIQPGSYGDTCEK  600 (690)
T ss_dssp             SBTSSSCEEET-----TEEECCSTTCBSTTSCB
T ss_pred             CCCCCCCEEeC-----CEEECCCCCccCCCcCc
Confidence            57999999963     39999 99999999997

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=92.06  E-value=0.066  Score=37.22  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHC   33 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rC   33 (143)
                      +||.|  +|+..+.+.+.|.|++||+|..+
T Consensus        10 ~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~   37 (118)
T 1dx5_I           10 ANCEY--QCQPLDQTSYLCVCAEGFAPIPH   37 (118)
T ss_dssp             CCCSS--EEEECSSSCEEEECCTTEEEETT
T ss_pred             CCCCC--CCCCCCCCCEEeECCCCccccCC
Confidence            67884  89877456899999999999854

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=92.01  E-value=0.03  Score=32.09  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=11.0

Q ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616          42 IAGGIAATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        42 ia~~i~~~Vl~lilIvllv~~~~~r~r   68 (143)
                      |++++.+ ++ +++|+.++..++.|||
T Consensus        10 IaagVvg-ll-l~vii~l~~~~~iRRr   34 (35)
T 1iij_A           10 IIATVVG-VL-LFLILVVVVGILIKRR   34 (35)
T ss_dssp             HHHHHHH-HH-HHHHHTTTTTHHHHHC
T ss_pred             eHHHHHH-HH-HHHHHHHHhheEEeec
Confidence            5555544 22 3333333444555544

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=91.99  E-value=0.079  Score=30.70  Aligned_cols=21  Identities=10%  Similarity=0.009  Sum_probs=9.8

Q ss_pred             eehhHHHHHHHHHHHHHHHHH
Q psy3616          42 IAGGIAATVVFLIIIALFVWM   62 (143)
Q Consensus        42 ia~~i~~~Vl~lilIvllv~~   62 (143)
                      |+..++++++.++++++++++
T Consensus        13 IAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           13 IVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeehHHHHHHHHHHHHHHH
Confidence            444444555444444444443

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=91.85  E-value=0.055  Score=39.89  Aligned_cols=30  Identities=30%  Similarity=0.837  Sum_probs=19.0

Q ss_pred             CCCCCC-CCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           2 CKGYCE-NKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         2 C~~~C~-NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      |.+.|. ++|.|...    +.|.|++||+|.+|+.
T Consensus        68 C~~~C~~~~g~C~~~----~~C~C~~G~~G~~C~~   98 (169)
T 2vj2_A           68 CRQGCSPKHGSCKLP----GDCRCQYGWQGLYCDK   98 (169)
T ss_dssp             CCTTCCTTTEECSST----TCCEECTTEESSSSCE
T ss_pred             CCCCCCCCCcccCCC----CeeECCCCCCCCCccc
Confidence            445554 34566543    6777777777777764

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=91.38  E-value=0.14  Score=33.66  Aligned_cols=29  Identities=31%  Similarity=0.532  Sum_probs=23.7

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      ++|.  ++|+.. .+++.|.|+ ++.|.+|+..
T Consensus        51 ~~C~--~~C~n~-~g~y~C~C~-g~~G~~~~~~   79 (87)
T 1z6c_A           51 NMCA--QLCVNY-PGGYTCYCD-GKKGFKLAQD   79 (87)
T ss_dssp             SCCS--SEECCC-SSSCCEECC-SSSCCBCCTT
T ss_pred             CCCC--CEEEcc-CCCEEEECC-CCcCCcccCC
Confidence            5676  799988 889999998 8888887753

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=91.38  E-value=0.066  Score=48.74  Aligned_cols=31  Identities=32%  Similarity=0.804  Sum_probs=27.5

Q ss_pred             CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCCcccc
Q psy3616           1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      .|...|..+|.|+..     .|.|.+||+|..|+.+
T Consensus       536 ~Cp~~C~ghG~C~~G-----~C~Cd~G~~G~~C~~~  566 (725)
T 2e26_A          536 GCLDMCSGHGRCVQG-----SCVCDEQWGGLYCDEP  566 (725)
T ss_dssp             CSSGGGGGSEEEETT-----EEEECTTEESTTSCEE
T ss_pred             CCCcccCCCcEECCC-----CEeeCCCccCCCcCcc
Confidence            488899999999965     8999999999999963

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=91.16  E-value=0.087  Score=33.99  Aligned_cols=19  Identities=21%  Similarity=0.555  Sum_probs=17.3

Q ss_pred             CCCCCCcEEEeCCCCCCeee
Q psy3616           4 GYCENKGTCVKDARGQPSCR   23 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~   23 (143)
                      .+|.++++|+.. .+++.|.
T Consensus        11 ~~C~~~~~C~Nt-~Gsy~C~   29 (71)
T 2kl7_A           11 EACKGEMKCINH-YGGYLCL   29 (71)
T ss_dssp             CSCTTEEEEEET-TCCEEEE
T ss_pred             CCCCCCCEeECC-CCCeEec
Confidence            579988999999 9999999

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=90.65  E-value=0.056  Score=39.22  Aligned_cols=30  Identities=17%  Similarity=0.553  Sum_probs=24.6

Q ss_pred             CCCCCcEE-EeCCCCCCeeeecCCCc----CCCccccc
Q psy3616           5 YCENKGTC-VKDARGQPSCRCVGSFI----GPHCAQKS   37 (143)
Q Consensus         5 ~C~NgG~C-~~~~~~~~~C~C~~gy~----G~rCe~~~   37 (143)
                      +|.+  +| +.. .+.+.|.|++||+    |.+|+...
T Consensus        94 ~C~~--~C~~n~-~g~y~C~C~~Gy~l~~dG~~C~~~~  128 (146)
T 1x7a_L           94 RCKQ--FCKTGA-DSKVLCSCTTGYRLAPDQKSCKPAV  128 (146)
T ss_dssp             SCSS--BCCCCS-SSCCCCBCCTTEEECTTSSSEEECS
T ss_pred             CCcC--CCCCCC-CCCEEeEcCCCcEeCCCCCcCCCCC
Confidence            4554  89 777 7899999999999    99998753

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=90.19  E-value=0.11  Score=31.62  Aligned_cols=30  Identities=23%  Similarity=0.779  Sum_probs=23.7

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~   36 (143)
                      +.|.  ..|+.. .+++.|.|++||.    |..|+..
T Consensus         9 ~~C~--~~C~nt-~Gsy~C~C~~Gy~L~~d~~~C~di   42 (55)
T 2jkh_L            9 GDCD--QFCHEE-QNSVVCSCARGYTLADNGKACIPT   42 (55)
T ss_dssp             GGCS--SEEEEE-TTEEEEECCTTEEECTTSSCEEES
T ss_pred             CCcC--cEeEcC-CCCeEEeCCCCCEECCCCCeeccC
Confidence            3565  489988 8999999999996    6777653

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=89.93  E-value=0.1  Score=47.18  Aligned_cols=26  Identities=27%  Similarity=0.807  Sum_probs=23.1

Q ss_pred             CCCCCcEEEeCCCCCCeeeecCCCcCCCccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCVGSFIGPHCAQ   35 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~~gy~G~rCe~   35 (143)
                      +|.|+|+|..     ..|.|.+||+|++|+.
T Consensus       567 ~Cs~~G~C~~-----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          567 ECSGRGRCRC-----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             BTSSSCCBCS-----SCBCCSTTCCTTTTCC
T ss_pred             CCCCCCcCCC-----CEEECCCCCcCCCCCC
Confidence            6889999974     4799999999999997

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=89.38  E-value=0.069  Score=43.62  Aligned_cols=24  Identities=29%  Similarity=0.735  Sum_probs=0.0

Q ss_pred             cEEEeCCCCCCeeeecCCCc----CCCcc
Q psy3616          10 GTCVKDARGQPSCRCVGSFI----GPHCA   34 (143)
Q Consensus        10 G~C~~~~~~~~~C~C~~gy~----G~rCe   34 (143)
                      ++|... .+.+.|.|++||.    |..|+
T Consensus        15 ~~C~~~-~g~~~C~C~~G~~l~~~~~~C~   42 (386)
T 3v65_B           15 QKCQMI-RGAVQCTCHTGYRLTEDGRTCQ   42 (386)
T ss_dssp             -----------------------------
T ss_pred             CCCcCC-CCCcEeECCCCceECCCCCccC
Confidence            456444 5556666666666    66664

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=89.33  E-value=0.18  Score=39.19  Aligned_cols=27  Identities=33%  Similarity=0.687  Sum_probs=23.4

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCC------CcCCCccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGS------FIGPHCAQ   35 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~g------y~G~rCe~   35 (143)
                      .+|.|+|+|+.     ..|.|.+|      |+|..||.
T Consensus       143 ~~Csg~G~C~~-----g~C~C~~gw~~~~~~~G~~Ce~  175 (217)
T 2p28_B          143 IICSGLGDCVC-----GQCLCHTSDVPGKLIYGQYCEC  175 (217)
T ss_dssp             CBGGGTEEEET-----TEEEECCCCSTTCCEESTTSCE
T ss_pred             CCCCCCCEEeC-----CceECCCCCCCcccEECCCccc
Confidence            57999999983     37999999      69999994

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=88.81  E-value=0.11  Score=36.13  Aligned_cols=32  Identities=31%  Similarity=0.881  Sum_probs=22.6

Q ss_pred             CCCCCCCC---cEEEeCCCCCCeeeecCCCc---CCCccc
Q psy3616           2 CKGYCENK---GTCVKDARGQPSCRCVGSFI---GPHCAQ   35 (143)
Q Consensus         2 C~~~C~Ng---G~C~~~~~~~~~C~C~~gy~---G~rCe~   35 (143)
                      |..+|.++   ++|+.  .+.+.|.|++||+   |.+|+.
T Consensus        42 C~~~C~~~~C~~~C~~--~~~y~C~C~~Gy~~~~g~~C~d   79 (118)
T 1dx5_I           42 CQMFCNQTACPADCDP--NTQASCECPEGYILDDGFICTD   79 (118)
T ss_dssp             EEECCCSSEEECEECT--TSTTCEECCTTEEEETTTEEEE
T ss_pred             cccccCCCCCCCcccC--CCCeEeECCCCccCCCCCcccc
Confidence            33445544   56654  4779999999999   888863

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=87.71  E-value=0.31  Score=38.58  Aligned_cols=25  Identities=16%  Similarity=0.526  Sum_probs=22.2

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCcCC
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFIGP   31 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~G~   31 (143)
                      ++|.|  +|... .+.+.|.|+.||.|.
T Consensus        52 ~~C~~--~C~~~-~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B           52 DGCQH--FCLPG-QESYTCSCAQGYRLG   76 (317)
T ss_dssp             TSCSS--EEECC-SSSCEEECCTTEECC
T ss_pred             CCCcC--ccccC-CCeeEEecccccccc
Confidence            68987  99988 889999999999874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=86.68  E-value=0.19  Score=41.01  Aligned_cols=30  Identities=27%  Similarity=0.791  Sum_probs=20.3

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~   36 (143)
                      ++|.++  |... .+++.|.|++||.    |..|+..
T Consensus        51 ~~C~~~--C~~~-~g~~~C~C~~g~~l~~d~~~C~~~   84 (386)
T 3v65_B           51 GYCSQG--CTNS-EGAFQCWCEAGYELRPDRRSCKAL   84 (386)
T ss_dssp             -CCTTE--EC------CCEECCTTEEECTTSSCEEEC
T ss_pred             CcccCc--CCCC-CCCCeEEECCCceEcCCCCeECCc
Confidence            578753  9888 8899999999998    8999854

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=85.14  E-value=0.41  Score=43.24  Aligned_cols=26  Identities=31%  Similarity=0.710  Sum_probs=22.8

Q ss_pred             CCCCCcEEEeCCCCCCeeeec------CCCcCCCccc
Q psy3616           5 YCENKGTCVKDARGQPSCRCV------GSFIGPHCAQ   35 (143)
Q Consensus         5 ~C~NgG~C~~~~~~~~~C~C~------~gy~G~rCe~   35 (143)
                      +|.|+|+|. .    ..|.|+      +||+|.+|+.
T Consensus       483 ~Cs~~G~C~-~----G~C~C~~~~~~~~G~~G~~Ce~  514 (687)
T 3k6s_B          483 ICSGLGDCV-C----GQCLCHTSDVPGKLIYGQYCEC  514 (687)
T ss_dssp             GGGSSEEEE-T----TEEEECCCCSTTCCEESTTSCE
T ss_pred             cCCCCCEEe-C----CEEEcCCCCCCCCCcccccccc
Confidence            599999999 3    399999      9999999983

>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}

Probab=84.11  E-value=1.1  Score=25.39  Aligned_cols=21  Identities=33%  Similarity=0.338  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy3616          48 ATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        48 ~~Vl~lilIvllv~~~~~r~r   68 (143)
                      |++++++++++.+.++.+-.|
T Consensus        10 Gvl~LLviV~LgV~LI~f~~k   30 (35)
T 2lk9_A           10 GILVLLIIVILGVPLIIFTIK   30 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHhcchheEEeee
Confidence            334444444455555555433

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=84.01  E-value=0.48  Score=27.10  Aligned_cols=8  Identities=38%  Similarity=0.833  Sum_probs=3.1

Q ss_pred             eehhHHHH
Q psy3616          42 IAGGIAAT   49 (143)
Q Consensus        42 ia~~i~~~   49 (143)
                      |++++++.
T Consensus        15 I~~~vv~G   22 (41)
T 2k9y_A           15 VIGGVAVG   22 (41)
T ss_dssp             HHHHHHHH
T ss_pred             EEeehhHH
Confidence            44443333

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=83.98  E-value=0.69  Score=40.47  Aligned_cols=34  Identities=18%  Similarity=0.437  Sum_probs=27.8

Q ss_pred             CCCCCCCCcEEEeCCCCCCeeeecCC--CcCCCccccc
Q psy3616           2 CKGYCENKGTCVKDARGQPSCRCVGS--FIGPHCAQKS   37 (143)
Q Consensus         2 C~~~C~NgG~C~~~~~~~~~C~C~~g--y~G~rCe~~~   37 (143)
                      |..||+|||.- .. ...-.|.|+++  -.|+.|+...
T Consensus       356 C~~PC~nn~~~-l~-g~~C~C~C~~~~~t~~~~C~~~~  391 (540)
T 3nsj_A          356 CSRPCRSGQHK-SS-HDSCQCECQDSKVTNQDCCPRQR  391 (540)
T ss_dssp             TTSCCBTTEEE-CS-SCTTCEEESCTTTBCGGGCBSST
T ss_pred             hcccccCCCcc-CC-CCceEeeCCCCCCcccccccccC
Confidence            67899999854 33 77889999999  7789999865

>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}

Probab=83.00  E-value=0.27  Score=41.67  Aligned_cols=31  Identities=26%  Similarity=0.867  Sum_probs=25.9

Q ss_pred             CCCCCCCCCcEEEeCCCCCCeeeecCCCcCCC--cccc
Q psy3616           1 VCKGYCENKGTCVKDARGQPSCRCVGSFIGPH--CAQK   36 (143)
Q Consensus         1 ~C~~~C~NgG~C~~~~~~~~~C~C~~gy~G~r--Ce~~   36 (143)
                      .|.+.|..+|.|..     -.|.|..||.|..  |...
T Consensus       193 ~Cp~~CsGhG~C~~-----g~C~Cd~G~~g~d~~C~~~  225 (387)
T 2ddu_A          193 PCPSYCSGHGDCIS-----GVCFCDLGYTAAQGTCVSN  225 (387)
T ss_dssp             CCGGGGGGSEEEET-----TEEEECTTEEEETTEEEES
T ss_pred             cCccccCCCceecC-----CeEEecCCcccCCCccccc
Confidence            38899999999964     3899999999986  7753

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=82.52  E-value=0.23  Score=29.79  Aligned_cols=30  Identities=23%  Similarity=0.834  Sum_probs=23.0

Q ss_pred             CCCCCCcEEEeCCCCCCeeeecCCCc----CCCcccc
Q psy3616           4 GYCENKGTCVKDARGQPSCRCVGSFI----GPHCAQK   36 (143)
Q Consensus         4 ~~C~NgG~C~~~~~~~~~C~C~~gy~----G~rCe~~   36 (143)
                      +.|..  .|+.. .+++.|.|+.||.    |..|+..
T Consensus         6 g~C~~--~C~n~-~gs~~C~C~~Gy~L~~d~~tC~di   39 (51)
T 1kig_L            6 GGCDQ--FCREE-RSEVRCSCAHGYVLGDDSKSCVST   39 (51)
T ss_dssp             TSSSS--CCCEE-TTEECCCCCTTEEECTTSSCEEEC
T ss_pred             CCcCC--EeEcC-CCCeEEeCCCCcEECCCCCccccC
Confidence            45653  58777 8899999999996    6778753

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=81.83  E-value=0.87  Score=30.17  Aligned_cols=28  Identities=14%  Similarity=0.056  Sum_probs=13.7

Q ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3616          41 YIAGGIAATVVFLIIIALFVWMICARSE   68 (143)
Q Consensus        41 ~ia~~i~~~Vl~lilIvllv~~~~~r~r   68 (143)
                      .++++++++++.+++|.+++++++....
T Consensus         9 n~~~Iv~gvi~gilliGllllliwk~~~   36 (79)
T 2knc_B            9 DILVVLLSVMGAILLIGLAALLIWKLLI   36 (79)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555554445555554444444

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=81.14  E-value=0.61  Score=39.98  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             CCCCCcEEEeC---CCCCCeeeecCCCcCCCcccc
Q psy3616           5 YCENKGTCVKD---ARGQPSCRCVGSFIGPHCAQK   36 (143)
Q Consensus         5 ~C~NgG~C~~~---~~~~~~C~C~~gy~G~rCe~~   36 (143)
                      +|.++|+|...   +.....|.|++||.|.+|+.-
T Consensus       442 ~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C  476 (525)
T 4aqs_A          442 ACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQC  476 (525)
T ss_dssp             CCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-
T ss_pred             CCCCCceecCCCcccCCCCEEECCCCCcCCCcccC
Confidence            45666666543   234568999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	1e-05
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	3e-05
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	6e-04
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	7e-04
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	0.002
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	0.002

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 1e-05
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEF 39
          K YC         A   PSC C   +IG  C +   F
Sbjct: 13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLF 49

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 3e-05
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHCAQKSEFA 40
            +C +          +P+C C   ++G  C      A
Sbjct: 12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLA 49

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
           GYC + G C+  +A  + +C CV  +IG  C
Sbjct: 9  DGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 3  KGYCENKGTCVK-DARGQPSCRCVGSFIGPHC 33
           GYC N G C+  ++    +C CV  + G  C
Sbjct: 11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 0.002
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 3  KGYCENKGTCVKDARGQPSCRCVGSFIGPHC 33
           GYC +          Q  CRC   + G  C
Sbjct: 11 NGYCLHGQCIYLVDMSQNYCRCEVGYTGVRC 41

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.002
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 6  CENKGTCVKDARGQPSCRCVGSFIGPHCAQKSE 38
          C  +G C+ +  G  +C C   F GP C    +
Sbjct: 9  CSKQGECL-ETIGNYTCSCYPGFYGPECEYVRD 40