Psyllid ID: psy3639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Secondary Structure (PSIPRED)
ccEEEEEEcccEEEEccccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcc
Coil and Loop (DISEMBL)
mgvprvtsspqrcltgsydrtcklwdiksgheictyrghQNVVYAVAFsepygdkiltgsFDKTLKLWASAKEECIQTYrghsaevvgvtfspdqstfcscsmdHTARIFNTM
Flexible Loop (DISEMBL)
mgvprvtsspqrcltgsydrtcklWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFspdqstfcscsMDHTARIFNTM
Low Complexity Region (SEG)
MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Disordered region (IsUnstruct)
************CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTA******
Disordered Region (DISOPRED)
MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Disordered Region (DISEMBL)
************CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Disordered Region (DISPRO)
MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q8N136	415	Outer row dynein assembly	yes	N/A	0.858	0.233	0.571	1e-29
Q4R8E7	415	Outer row dynein assembly	N/A	N/A	0.469	0.127	0.571	2e-29
Q0P593	415	Outer row dynein assembly	yes	N/A	0.840	0.228	0.571	2e-29
Q5BK30	415	Outer row dynein assembly	yes	N/A	0.858	0.233	0.561	2e-29
Q5FWQ6	415	Outer row dynein assembly	N/A	N/A	0.840	0.228	0.551	9e-29
Q6P2Y2	415	Outer row dynein assembly	yes	N/A	0.840	0.228	0.551	9e-29
Q1LV15	415	Outer row dynein assembly	yes	N/A	0.840	0.228	0.551	1e-28
Q3Y8L7	446	Outer row dynein assembly	N/A	N/A	0.884	0.224	0.504	1e-26
Q00808	1356	Vegetative incompatibilit	no	N/A	0.973	0.081	0.442	1e-17
Q8YTC2	1258	Uncharacterized WD repeat	yes	N/A	0.920	0.082	0.409	3e-17

>sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 75/98 (76%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct: 108 ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 205

May play a role in axonemal outer row dynein assembly.
Homo sapiens (taxid: 9606)

>sp|Q4R8E7|WDR69_MACFA Outer row dynein assembly protein 16 homolog OS=Macaca fascicularis GN=WDR69 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 74/98 (75%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDK  TGSFDKT KLW+    
Sbjct: 108 ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSVETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA+++N
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWN 205

May play a role in axonemal outer row dynein assembly.

Macaca fascicularis (taxid: 9541)

>sp|Q0P593|WDR69_BOVIN Outer row dynein assembly protein 16 homolog OS=Bos taurus GN=WDR69 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 75/98 (76%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct: 108 ITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 205

May play a role in axonemal outer row dynein assembly.

Bos taurus (taxid: 9913)

>sp|Q5BK30|WDR69_RAT Outer row dynein assembly protein 16 homolog OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 76/98 (77%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW++   
Sbjct: 108 ITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWD 205

May play a role in axonemal outer row dynein assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q5FWQ6|WDR69_XENLA Outer row dynein assembly protein 16 homolog OS=Xenopus laevis GN=wdr69 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+ F+ PYGDKI TGSFDKT KLW++   
Sbjct: 108 ITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V + F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLVFNPQSTLIATGSMDTTAKLWD 205

May play a role in axonemal outer row dynein assembly.

Xenopus laevis (taxid: 8355)

>sp|Q6P2Y2|WDR69_XENTR Outer row dynein assembly protein 16 homolog OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+ F+ PYGDKI TGSFDKT KLW++   
Sbjct: 108 ITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V + F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLAFNPQSTLIATGSMDTTAKLWD 205

May play a role in axonemal outer row dynein assembly.

Xenopus tropicalis (taxid: 8364)

>sp|Q1LV15|WDR69_DANRE Outer row dynein assembly protein 16 homolog OS=Danio rerio GN=wdr69 PE=2 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 75/98 (76%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+AF+ PYGDK+ TGSFDKT KLW++   
Sbjct: 108 ITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V + F+P  +   + SMD TA++++
Sbjct: 168 KCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWD 205

Required for axonemal dynein assembly and ciliary motility in ciliated organs, including Kupffer's vesicle, during embryogenesis.

Danio rerio (taxid: 7955)

>sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 75/103 (72%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S  R +TGSYDRTCK+W+  +G E+ T  GH+NVVYA+AF+ PYGDKI+TGSFDKT KLW
Sbjct: 105 SGDRFITGSYDRTCKVWNTFTGEEVFTLEGHKNVVYAIAFNNPYGDKIVTGSFDKTCKLW 164

Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +   +   T +GH  E+V ++F+P  +   + SMD+TA++++
Sbjct: 165 DAYTGQLYYTLKGHQTEIVCLSFNPQSTIIATGSMDNTAKLWD 207

Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 3    VPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
            V  V  SP  QR  +GS D+T K+WD  SG    T  GH   V++VAFS P G ++ +GS
Sbjct: 970  VLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFS-PDGQRVASGS 1028

Query: 61   FDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
             DKT+K+W +A   C QT  GH   V  V FSPD     S S DHT +I++ +
Sbjct: 1029 DDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAV 1081

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 7   TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
           ++  Q   +GS DRT K+W+  +G  + TY GH N VY++A+S P    +++GS D+T+K
Sbjct: 819 SADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYS-PDSKILVSGSGDRTIK 877

Query: 67  LWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           LW      CI+T  GH+ EV  V FSPD  T    S+D + R++N
Sbjct: 878 LWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWN 922

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
338725723	429	PREDICTED: WD repeat-containing protein	0.911	0.240	0.547	7e-29
224060051	415	PREDICTED: outer row dynein assembly pro	0.884	0.240	0.563	1e-28
156554779	420	PREDICTED: WD repeat-containing protein	0.884	0.238	0.594	1e-28
405960245	652	WD repeat-containing protein 69 [Crassos	0.858	0.148	0.591	1e-28
296205787	400	PREDICTED: outer row dynein assembly pro	0.858	0.242	0.591	1e-28
355565246	415	hypothetical protein EGK_04867 [Macaca m	0.469	0.127	0.581	2e-28
395528109	415	PREDICTED: outer row dynein assembly pro	0.840	0.228	0.571	3e-28
126338290	474	PREDICTED: WD repeat-containing protein	0.840	0.200	0.571	4e-28
110759973	416	PREDICTED: WD repeat-containing protein	0.884	0.240	0.584	4e-28
350593958	447	PREDICTED: WD repeat-containing protein	0.469	0.118	0.571	4e-28

>gi|338725723|ref|XP_001494264.3| PREDICTED: WD repeat-containing protein 69-like [Equus caballus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 79/106 (74%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +  S  R +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT 
Sbjct: 114 LNKSGSRFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTC 173

Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           KLW++   +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 174 KLWSAETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 219

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224060051|ref|XP_002194867.1| PREDICTED: outer row dynein assembly protein 16 homolog [Taeniopygia guttata]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 78/103 (75%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S  R +TGSYDRTCKLWD  SG E+ +  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW
Sbjct: 103 SGSRFITGSYDRTCKLWDTASGEELHSLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLW 162

Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           ++   +C  T+RGHSAE+V ++F+P  +   + SMD TA++++
Sbjct: 163 STETGKCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAKLWD 205

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156554779|ref|XP_001603367.1| PREDICTED: WD repeat-containing protein 69-like [Nasonia vitripennis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 76/101 (75%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
           +RCLTGSYDRTCK+WDI+SG E+ T  GH+NVVYAV+F++P  DKI+TGSFDK+ ++W S
Sbjct: 107 KRCLTGSYDRTCKVWDIESGAELLTLEGHKNVVYAVSFNKPASDKIVTGSFDKSARVWCS 166

Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
               C+ +  GH AEVV   FSP QS   + SMD TARIF+
Sbjct: 167 RTGHCLVSLWGHDAEVVVARFSPTQSKVATGSMDATARIFH 207

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405960245|gb|EKC26186.1| WD repeat-containing protein 69 [Crassostrea gigas]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 76/98 (77%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+S   
Sbjct: 108 ITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSSETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGHSAE+V ++F+P  S   + SMD TA++++
Sbjct: 168 KCYHTFRGHSAEIVCLSFNPQSSVVATGSMDTTAKLWD 205

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|296205787|ref|XP_002749910.1| PREDICTED: outer row dynein assembly protein 16 homolog [Callithrix jacchus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 74/98 (75%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYAVAF+ PYGDKI TGSFDKT KLW+    
Sbjct: 93  ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAVAFNNPYGDKIATGSFDKTCKLWSVETG 152

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH AE+V ++F+P  +   + SMD TA+++N
Sbjct: 153 QCYHTFRGHRAEIVCLSFNPQSTLVATGSMDTTAKLWN 190

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355565246|gb|EHH21735.1| hypothetical protein EGK_04867 [Macaca mulatta] gi|355750898|gb|EHH55225.1| hypothetical protein EGM_04384 [Macaca fascicularis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 75/98 (76%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct: 108 ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA+++N
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWN 205

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395528109|ref|XP_003766174.1| PREDICTED: outer row dynein assembly protein 16 homolog [Sarcophilus harrisii]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW++   
Sbjct: 108 ITGSYDRTCKLWDTSSGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETG 167

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLIATGSMDTTAKLWD 205

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126338290|ref|XP_001373412.1| PREDICTED: WD repeat-containing protein 69-like [Monodelphis domestica]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW++   
Sbjct: 167 ITGSYDRTCKLWDTSSGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETG 226

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 227 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 264

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|110759973|ref|XP_394888.3| PREDICTED: WD repeat-containing protein 69-like [Apis mellifera]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
           +RCLTGSYDRTCK+WDI SG E+ T  GH+NVVY V+F+ P  DKI+TGSFDKT K+W S
Sbjct: 105 KRCLTGSYDRTCKVWDIDSGTELLTLEGHKNVVYTVSFNNPISDKIVTGSFDKTAKIWCS 164

Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
               C  T RGH+AEVV   FSP  +   + S+D T+RIF+
Sbjct: 165 RTGHCTTTMRGHNAEVVVAKFSPIYTKIATGSLDMTSRIFD 205

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350593958|ref|XP_003133751.3| PREDICTED: WD repeat-containing protein 69-like [Sus scrofa]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           +TGSYDRTCKLWD+ SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct: 140 ITGSYDRTCKLWDMASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 199

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct: 200 KCYHTFRGHAAEIVCLSFNPQSTLVATGSMDTTAKLWD 237

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
RGD|1561436	415	LOC363267 "hypothetical protei	0.867	0.236	0.561	5.6e-29
UNIPROTKB|Q0P593	415	WDR69 "Outer row dynein assemb	0.867	0.236	0.571	7.1e-29
UNIPROTKB|Q8N136	415	WDR69 "Outer row dynein assemb	0.867	0.236	0.571	7.1e-29
ZFIN|ZDB-GENE-050419-255	415	daw1 "dynein assembly factor w	0.867	0.236	0.551	9.1e-29
ASPGD|ASPL0000005389	678	sconB [Emericella nidulans (ta	0.814	0.135	0.422	3.8e-16
ASPGD|ASPL0000031743	954	AN8505 [Emericella nidulans (t	0.929	0.110	0.472	5e-16
DICTYBASE|DDB_G0282189	579	tupA "transcriptional represso	0.964	0.188	0.396	4.3e-15
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.955	0.079	0.396	4.5e-15
RGD|1311303	521	Prpf4 "PRP4 pre-mRNA processin	0.849	0.184	0.375	5.8e-15
MGI|MGI:1917302	521	Prpf4 "PRP4 pre-mRNA processin	0.849	0.184	0.375	5.8e-15

RGD|1561436 LOC363267 "hypothetical protein LOC363267" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 55/98 (56%), Positives = 76/98 (77%)

Query:    14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
             +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW++   
Sbjct:   108 ITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETG 167

Query:    74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct:   168 KCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWD 205

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 56/98 (57%), Positives = 75/98 (76%)

Query:    14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
             +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct:   108 ITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167

Query:    74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct:   168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 205

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 56/98 (57%), Positives = 75/98 (76%)

Query:    14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
             +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT KLW+    
Sbjct:   108 ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETG 167

Query:    74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +C  T+RGH+AE+V ++F+P  +   + SMD TA++++
Sbjct:   168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWD 205

GO:0005929 "cilium" evidence=IEA

ZFIN|ZDB-GENE-050419-255 daw1 "dynein assembly factor with WDR repeat domains 1" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 54/98 (55%), Positives = 75/98 (76%)

Query:    14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
             +TGSYDRTCK+WD  SG E+ T  GH+NVVYA+AF+ PYGDK+ TGSFDKT KLW++   
Sbjct:   108 ITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETG 167

Query:    74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +C  T+RGH+AE+V + F+P  +   + SMD TA++++
Sbjct:   168 KCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWD 205

GO:0003674 "molecular_function" evidence=ND

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0070286 "axonemal dynein complex assembly" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060285 "ciliary cell motility" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0005929 "cilium" evidence=IEA

ASPGD|ASPL0000005389 sconB [Emericella nidulans (taxid:162425)]

 Score = 211 (79.3 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 41/97 (42%), Positives = 61/97 (62%)

Query:    15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
             TGSYD T K+WD ++G E+ T RGH++ +  + F +    K+++GS D+T+K+W     E
Sbjct:   364 TGSYDTTIKIWDTETGEELRTLRGHESGIRCLQFDDT---KLISGSMDRTIKVWNWRTGE 420

Query:    75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             CI TY GH   V+G+ F  D S   S S+D T +I+N
Sbjct:   421 CISTYTGHRGGVIGLHF--DASILASGSVDKTVKIWN 455

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

ASPGD|ASPL0000031743 AN8505 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 51/108 (47%), Positives = 64/108 (59%)

Query:     6 VTSSPQ-RCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
             V  SP  R L +GS+D+T +LWD  +G    T RGH N V +VAFS P G  + +GSFDK
Sbjct:   743 VAFSPDGRLLASGSFDKTVRLWDPATGSLQQTLRGHSNWVRSVAFS-PDGRLLASGSFDK 801

Query:    64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             T++LW  A     QT RGHS  V  V FSPD     S S D T R+++
Sbjct:   802 TVRLWDPATGSLQQTLRGHSDTVRSVAFSPDGRLLASGSFDKTVRLWD 849

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 200 (75.5 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 46/116 (39%), Positives = 65/116 (56%)

Query:     2 GVPRVTSSPQRCLT--GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
             GV  V  SP   L   GS D   +LWD ++G+ +  Y GH + VY+VAFS P G  + +G
Sbjct:   417 GVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFS-PDGKSLASG 475

Query:    60 SFDKTLKLW----ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             S DK+LKLW    + ++  C  T+ GH   V+ V FSPD S   S S D + + ++
Sbjct:   476 SLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWD 531

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 205 (77.2 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 44/111 (39%), Positives = 64/111 (57%)

Query:     3 VPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
             V  V  SP  ++ ++GSYD T K+WD  +G  + T  GH   V ++AFS P G  + +GS
Sbjct:   753 VESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS-PDGKLLASGS 811

Query:    61 FDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +D T+ LW SA  E +QT+ GH   +  V F+PD     S S D T +I++
Sbjct:   812 YDNTIDLWDSATGELLQTFEGHPHSIWSVAFAPDGKELASASDDSTIKIWD 862

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1311303 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 36/96 (37%), Positives = 55/96 (57%)

Query:    15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
             TGS D TCK+WD++    + T   HQN+V  V F   +GD +LTG++D T K+W      
Sbjct:   423 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWS 482

Query:    75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
              ++T  GH  +V+G+  S D     +CS D T +++
Sbjct:   483 PLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518

GO:0005634 "nucleus" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA;ISO

GO:0071001 "U4/U6 snRNP" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1917302 Prpf4 "PRP4 pre-mRNA processing factor 4 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 36/96 (37%), Positives = 55/96 (57%)

Query:    15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
             TGS D TCK+WD++    + T   HQN+V  V F   +GD +LTG++D T K+W      
Sbjct:   423 TGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWS 482

Query:    75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
              ++T  GH  +V+G+  S D     +CS D T +++
Sbjct:   483 PLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISO

GO:0071001 "U4/U6 snRNP" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P2Y2	WDR69_XENTR	No assigned EC number	0.5510	0.8407	0.2289	yes	N/A
Q8N136	WDR69_HUMAN	No assigned EC number	0.5714	0.8584	0.2337	yes	N/A
Q1LV15	WDR69_DANRE	No assigned EC number	0.5510	0.8407	0.2289	yes	N/A
Q0P593	WDR69_BOVIN	No assigned EC number	0.5714	0.8407	0.2289	yes	N/A
Q5BK30	WDR69_RAT	No assigned EC number	0.5612	0.8584	0.2337	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  104 bits (262), Expect = 1e-28
 Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 3/113 (2%)

Query: 1   MGVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
             V  V  SP  ++ L+ S D T KLWD+ +G  + T RGH+N V +VAFS P G  + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLAS 236

Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           GS D T+++W     EC+QT  GH+  V  + +SPD     S S D T RI++
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (254), Expect = 1e-27
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 2   GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
            V  V +S       +GS D+T +LWD+++G  + T  GH + V +VAFS P G  + + 
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSS 111

Query: 60  SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           S DKT+K+W     +C+ T RGH+  V  V FSPD +   S S D T ++++ 
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.3 bits (248), Expect = 1e-26
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)

Query: 5   RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
             +   +   TGS D T K+WD+++G  + T +GH   V  VA S   G  + +GS DKT
Sbjct: 16  AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS-ADGTYLASGSSDKT 74

Query: 65  LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           ++LW     EC++T  GH++ V  V FSPD     S S D T ++++ 
Sbjct: 75  IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.4 bits (243), Expect = 6e-26
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 5   RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
             +       + S D T KLWD+++G  + T  GH   V +VAFS P G+K+L+ S D T
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGT 200

Query: 65  LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           +KLW  +  +C+ T RGH   V  V FSPD     S S D T R+++  
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.5 bits (194), Expect = 9e-19
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 32  EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTF 91
              T +GH   V  VAFS P G  + TGS D T+K+W     E ++T +GH+  V  V  
Sbjct: 1   LRRTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 92  SPDQSTFCSCSMDHTARIFNTM 113
           S D +   S S D T R+++  
Sbjct: 60  SADGTYLASGSSDKTIRLWDLE 81

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.0 bits (175), Expect = 4e-16
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
                  +GS D T +LWD+ +G  +  T  GH + V + +FS P G  + +GS D T++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFS-PDGSLLASGSSDGTIR 266

Query: 67  LW-ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           LW   +    ++T  GHS+ V+ V FSPD     S S D T R+++ 
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.1 bits (170), Expect = 2e-15
 Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 13  CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
               S D T KLWD+++G  + T  GH + V ++AFS   G  I +GS D T++LW  + 
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 73  EECIQ-TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            + ++ T  GHS  VV   FSPD S   S S D T R+++ 
Sbjct: 231 GKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDL 270

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.0 bits (167), Expect = 6e-15
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
            +       +GS D T +LWD++S    + T  GH + V +VAFS P G  + +GS D T
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS-PDGKLLASGSSDGT 307

Query: 65  LKLWASAKEECIQ--TYRGHSAEVVGVTFSPDQSTF-CSCSMDHTARIFNT 112
           ++LW     + +   T +GH   V  ++FSPD S      S D T R+++ 
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 2e-13
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEIC--TYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
            +   +   +GS D T +LWD+++G  +   T +GH+  V +++FS      +  GS D 
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 64  TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           T++LW     + ++T  GHS  V+ V+FSPD     S S D T R+++ 
Sbjct: 352 TIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 11  QRCLTGSYDRTCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYGDKILT--GSFDKTLK 66
           +  L+GS D T KLWD+ +G   I +  G H + V  +A S P G+ IL    S D T+K
Sbjct: 78  ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137

Query: 67  LWASAKE-ECIQTYRGHSAEVVGVTFSPDQSTFCSCS-MDHTARIFNT 112
           LW  +   + I+T  GHS  V  + FSPD     S S +D T ++++ 
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 5/112 (4%)

Query: 3   VPRVTSSPQRC---LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
           V  ++ SP        GS D T +LWD+++G  + T  GH NV  +V+FS P G  + +G
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFS-PDGRVVSSG 388

Query: 60  SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           S D T++LW  +    ++   GH++ V  + FSPD  +  S S D+T R+++
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 4e-08
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           E ++T +GH+  V  V FSPD     S S D T ++++
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 5e-08
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 73  EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            + ++T +GH+  V  V FSPD +   S S D T R+++
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 29 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
          SG  + T +GH   V +VAFS P G  + +GS D T+KLW
Sbjct: 1  SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)

Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
           +GS D T +LWD+ +G  +    GH + V ++ FS P G  + +GS D T++LW      
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS-PDGKSLASGSSDNTIRLWDLKTSL 445

Query: 75  CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTA 107
                         V+FSPD     S S D + 
Sbjct: 446 KS------------VSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 30 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
          G  + T +GH   V +VAFS P G+ + +GS D T+++W
Sbjct: 1  GKLLRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S    L    D    L D+ S       RGH++ + ++AFS P G+ +L+GS D T+KLW
Sbjct: 38  SGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFS-PDGELLLSGSSDGTIKLW 92

Query: 69  A-SAKEECIQTYRG-HSAEVVGVTF-SPDQSTF--CSCSMDHTARIFN 111
                E+ I++  G H + V  +   SPD ++    S S+D T ++++
Sbjct: 93  DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 7   TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
           ++ P    +GS D + KLW I  G  I T +   N+   V F    G  +  GS D  + 
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVY 643

Query: 67  LWASAKEEC-IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +     +  + T  GHS  V  V F  D ST  S S D+T ++++
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 10  PQRCLTGSYDRTCKLWDIKS-------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
           PQ+  T S D T   W I            I   +GH   V  V+F     + + +   D
Sbjct: 88  PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147

Query: 63  KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
             + +W   + + ++  + HS ++  + ++ D S  C+ S D    I
Sbjct: 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG0263|consensus	707		99.96
KOG0272|consensus	459		99.96
KOG0271|consensus	480		99.95
KOG0266|consensus	456		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0286|consensus	343		99.94
KOG0272|consensus	459		99.94
KOG0263|consensus	707		99.94
KOG0291|consensus	893		99.93
KOG0284|consensus	464		99.93
KOG0271|consensus	480		99.93
KOG0319|consensus	775		99.92
KOG0266|consensus	456		99.92
KOG0279|consensus	315		99.92
KOG0273|consensus	524		99.92
KOG0316|consensus	307		99.91
KOG0285|consensus	460		99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0295|consensus	406		99.91
KOG0279|consensus	315		99.91
KOG0275|consensus	508		99.89
KOG0269|consensus	839		99.89
KOG0286|consensus	343		99.89
KOG0283|consensus	712		99.88
KOG0319|consensus	775		99.88
KOG0315|consensus	311		99.88
KOG0302|consensus	440		99.88
KOG0273|consensus	524		99.88
KOG0281|consensus	499		99.88
KOG0315|consensus	311		99.88
KOG0276|consensus	794		99.88
PTZ00421	493	coronin; Provisional	99.88
KOG0318|consensus	603		99.88
KOG0282|consensus	503		99.88
KOG0645|consensus	312		99.87
KOG0264|consensus	422		99.87
KOG0285|consensus	460		99.87
KOG0284|consensus	464		99.87
KOG0265|consensus	338		99.87
KOG0277|consensus	311		99.87
KOG0277|consensus	311		99.87
KOG0292|consensus	1202		99.86
KOG0282|consensus	503		99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0647|consensus	347		99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0295|consensus	406		99.86
KOG0645|consensus	312		99.86
KOG0283|consensus	712		99.86
KOG0289|consensus	506		99.86
KOG0275|consensus	508		99.85
KOG0276|consensus	794		99.85
KOG0310|consensus	487		99.85
KOG0294|consensus	362		99.85
KOG0318|consensus	603		99.85
KOG0278|consensus	334		99.85
KOG0313|consensus	423		99.85
KOG0973|consensus	942		99.85
PTZ00420	568	coronin; Provisional	99.84
KOG0310|consensus	487		99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0265|consensus	338		99.83
KOG0305|consensus	484		99.83
KOG0303|consensus	472		99.83
KOG0291|consensus	893		99.83
KOG0289|consensus	506		99.82
KOG1034|consensus	385		99.82
KOG0264|consensus	422		99.82
KOG0308|consensus	735		99.81
KOG0293|consensus	519		99.81
KOG1445|consensus	1012		99.81
KOG0296|consensus	399		99.81
KOG0772|consensus	641		99.81
KOG0274|consensus	537		99.8
KOG0267|consensus	825		99.8
KOG0316|consensus	307		99.79
KOG0296|consensus	399		99.79
KOG0292|consensus	1202		99.79
KOG0274|consensus	537		99.79
KOG1332|consensus	299		99.79
KOG1274|consensus	933		99.79
KOG0643|consensus	327		99.79
KOG0281|consensus	499		99.79
KOG0313|consensus	423		99.78
KOG0305|consensus	484		99.78
KOG0293|consensus	519		99.78
KOG0640|consensus	430		99.78
KOG0640|consensus	430		99.78
KOG0308|consensus	735		99.78
KOG0269|consensus	839		99.78
KOG1407|consensus	313		99.77
KOG0643|consensus	327		99.77
KOG1446|consensus	311		99.77
KOG0646|consensus	476		99.77
KOG0306|consensus	888		99.77
KOG1273|consensus	405		99.77
KOG0641|consensus	350		99.77
KOG1446|consensus	311		99.77
KOG0300|consensus	481		99.77
KOG0306|consensus	888		99.76
KOG0299|consensus	479		99.75
KOG0639|consensus	705		99.75
KOG0302|consensus	440		99.74
KOG0646|consensus	476		99.74
KOG1036|consensus	323		99.74
KOG0294|consensus	362		99.74
KOG4283|consensus	397		99.73
KOG0267|consensus	825		99.73
KOG0270|consensus	463		99.73
KOG1407|consensus	313		99.72
KOG1539|consensus	910		99.72
KOG0278|consensus	334		99.72
KOG2110|consensus	391		99.72
KOG0639|consensus	705		99.72
KOG0973|consensus	942		99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.71
KOG1539|consensus	910		99.71
KOG2394|consensus	636		99.71
KOG4283|consensus	397		99.7
KOG2096|consensus	420		99.7
KOG1310|consensus	758		99.7
KOG2445|consensus	361		99.69
KOG0322|consensus	323		99.69
KOG0270|consensus	463		99.69
KOG1273|consensus	405		99.69
KOG0642|consensus	577		99.68
KOG0641|consensus	350		99.67
KOG0644|consensus	1113		99.67
KOG0268|consensus	433		99.67
KOG2111|consensus	346		99.67
KOG1408|consensus	1080		99.66
KOG1063|consensus	764		99.66
KOG0772|consensus	641		99.66
KOG0268|consensus	433		99.66
KOG0301|consensus	745		99.65
KOG4378|consensus	673		99.65
KOG0290|consensus	364		99.65
KOG0647|consensus	347		99.65
KOG1009|consensus	434		99.65
KOG1188|consensus	376		99.64
KOG1036|consensus	323		99.64
KOG0288|consensus	459		99.64
KOG0649|consensus	325		99.64
KOG0299|consensus	479		99.64
KOG0300|consensus	481		99.63
KOG0321|consensus	720		99.63
KOG1007|consensus	370		99.63
KOG1272|consensus	545		99.63
KOG0288|consensus	459		99.63
KOG0301|consensus	745		99.62
KOG1009|consensus	434		99.62
KOG2394|consensus	636		99.61
KOG1274|consensus	933		99.61
KOG2096|consensus	420		99.61
KOG0771|consensus	398		99.61
KOG1332|consensus	299		99.6
KOG2106|consensus	626		99.6
KOG4328|consensus	498		99.6
KOG1007|consensus	370		99.57
KOG2919|consensus	406		99.57
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.57
KOG0321|consensus	720		99.57
KOG2048|consensus	691		99.57
KOG4227|consensus	609		99.56
KOG1034|consensus	385		99.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.55
KOG4328|consensus	498		99.55
KOG0303|consensus	472		99.55
KOG0649|consensus	325		99.53
KOG2919|consensus	406		99.52
KOG2055|consensus	514		99.52
KOG1408|consensus	1080		99.52
KOG0307|consensus	1049		99.5
KOG1538|consensus	1081		99.49
KOG2445|consensus	361		99.48
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
KOG0280|consensus	339		99.47
KOG2048|consensus	691		99.47
KOG4378|consensus	673		99.45
KOG1188|consensus	376		99.45
COG2319	466	FOG: WD40 repeat [General function prediction only	99.45
KOG2110|consensus	391		99.45
KOG3881|consensus	412		99.44
KOG2055|consensus	514		99.44
KOG1523|consensus	361		99.44
KOG0307|consensus	1049		99.44
KOG1445|consensus	1012		99.44
KOG1587|consensus	555		99.42
KOG0642|consensus	577		99.41
KOG0290|consensus	364		99.41
KOG2111|consensus	346		99.41
KOG1963|consensus	792		99.41
KOG1524|consensus	737		99.4
KOG0322|consensus	323		99.39
KOG2106|consensus	626		99.39
COG2319	466	FOG: WD40 repeat [General function prediction only	99.38
KOG1272|consensus	545		99.37
KOG1063|consensus	764		99.33
KOG1523|consensus	361		99.33
KOG1240|consensus	1431		99.32
KOG0280|consensus	339		99.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.31
KOG0650|consensus	733		99.31
KOG1517|consensus	1387		99.3
KOG0974|consensus	967		99.3
KOG2321|consensus	703		99.27
KOG1587|consensus	555		99.26
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.26
KOG0974|consensus	967		99.25
KOG1538|consensus	1081		99.25
KOG1310|consensus	758		99.24
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.24
KOG2139|consensus	445		99.24
PRK01742	429	tolB translocation protein TolB; Provisional	99.23
KOG2139|consensus	445		99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.22
KOG0650|consensus	733		99.2
PRK11028	330	6-phosphogluconolactonase; Provisional	99.19
KOG2321|consensus	703		99.19
KOG0771|consensus	398		99.18
KOG4547|consensus	541		99.14
KOG2315|consensus	566		99.14
KOG1517|consensus	1387		99.1
PRK05137	435	tolB translocation protein TolB; Provisional	99.08
KOG4497|consensus	447		99.08
KOG4547|consensus	541		99.06
KOG4227|consensus	609		99.05
KOG1240|consensus	1431		99.05
KOG1524|consensus	737		99.05
KOG3914|consensus	390		99.04
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.04
KOG4714|consensus	319		99.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.01
PRK03629	429	tolB translocation protein TolB; Provisional	99.01
PRK02889	427	tolB translocation protein TolB; Provisional	99.01
PRK01742	429	tolB translocation protein TolB; Provisional	98.99
KOG4714|consensus	319		98.98
KOG3881|consensus	412		98.97
PRK04922	433	tolB translocation protein TolB; Provisional	98.97
PRK03629	429	tolB translocation protein TolB; Provisional	98.95
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.94
KOG2695|consensus	425		98.9
KOG3621|consensus	726		98.9
KOG3914|consensus	390		98.89
KOG1963|consensus	792		98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.89
KOG1334|consensus	559		98.89
PRK04922	433	tolB translocation protein TolB; Provisional	98.88
KOG2041|consensus	1189		98.88
KOG1064|consensus	2439		98.85
KOG1275|consensus	1118		98.85
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
PRK00178	430	tolB translocation protein TolB; Provisional	98.82
PRK02889	427	tolB translocation protein TolB; Provisional	98.81
PRK05137	435	tolB translocation protein TolB; Provisional	98.81
KOG0644|consensus	1113		98.81
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
KOG4532|consensus	344		98.79
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
KOG1645|consensus	463		98.75
KOG1409|consensus	404		98.74
KOG1354|consensus	433		98.74
PRK01029	428	tolB translocation protein TolB; Provisional	98.72
KOG1409|consensus	404		98.69
PRK01029	428	tolB translocation protein TolB; Provisional	98.66
KOG3617|consensus	1416		98.65
PRK00178	430	tolB translocation protein TolB; Provisional	98.62
KOG1334|consensus	559		98.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.59
KOG4532|consensus	344		98.58
KOG2314|consensus	698		98.57
KOG4640|consensus	665		98.54
PRK04792	448	tolB translocation protein TolB; Provisional	98.51
KOG4640|consensus	665		98.51
KOG1064|consensus	2439		98.51
KOG2066|consensus	846		98.51
KOG1275|consensus	1118		98.5
KOG4190|consensus	1034		98.5
KOG4497|consensus	447		98.47
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.47
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.44
COG4946	668	Uncharacterized protein related to the periplasmic	98.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.41
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.39
KOG4190|consensus	1034		98.38
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
KOG1912|consensus	1062		98.28
KOG1354|consensus	433		98.26
KOG1912|consensus	1062		98.26
KOG2444|consensus	238		98.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.14
KOG2066|consensus	846		98.13
KOG0309|consensus	1081		98.13
KOG2695|consensus	425		98.11
KOG2079|consensus	1206		98.11
KOG0309|consensus	1081		98.11
KOG1832|consensus	1516		98.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.02
PRK04043	419	tolB translocation protein TolB; Provisional	97.94
KOG4649|consensus	354		97.94
KOG1645|consensus	463		97.93
KOG2314|consensus	698		97.91
KOG4649|consensus	354		97.89
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.88
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.86
KOG2315|consensus	566		97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.73
KOG2114|consensus	933		97.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.71
KOG1920|consensus	1265		97.67
KOG1832|consensus	1516		97.63
PRK02888	635	nitrous-oxide reductase; Validated	97.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.61
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.6
KOG0882|consensus	558		97.52
KOG2041|consensus	1189		97.51
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.48
KOG2395|consensus	644		97.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.44
KOG1008|consensus	783		97.44
KOG1008|consensus	783		97.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.41
KOG0882|consensus	558		97.41
KOG3617|consensus	1416		97.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.34
PRK13616	591	lipoprotein LpqB; Provisional	97.34
PRK02888	635	nitrous-oxide reductase; Validated	97.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.32
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.22
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.16
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.15
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	97.15
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.11
KOG3621|consensus	726		97.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.05
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.03
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.97
COG3391	381	Uncharacterized conserved protein [Function unknow	96.96
KOG2079|consensus	1206		96.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.79
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.77
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.53
KOG3630|consensus	1405		96.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.48
COG3391	381	Uncharacterized conserved protein [Function unknow	96.45
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.42
KOG2114|consensus	933		96.24
KOG2444|consensus	238		96.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.14
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.0
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.91
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.89
PRK13616	591	lipoprotein LpqB; Provisional	95.86
COG5167	776	VID27 Protein involved in vacuole import and degra	95.8
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.79
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.75
KOG4499|consensus	310		95.74
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.72
KOG1920|consensus	1265		95.67
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.58
KOG1897|consensus	1096		95.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.46
KOG1916|consensus	1283		95.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.21
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.14
KOG2395|consensus	644		95.03
KOG4460|consensus	741		95.01
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.88
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.77
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.6
PRK10115	686	protease 2; Provisional	94.43
PHA02713	557	hypothetical protein; Provisional	93.98
KOG4499|consensus	310		93.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.93
PHA02713	557	hypothetical protein; Provisional	93.88
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.78
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.77
KOG4441|consensus	571		93.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.68
COG4590	733	ABC-type uncharacterized transport system, permeas	93.57
KOG1916|consensus	1283		93.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.46
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.1
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.99
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.51
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	92.27
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.99
KOG3630|consensus	1405		91.99
PHA03098	534	kelch-like protein; Provisional	91.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.78
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.66
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.27
KOG4441|consensus	571		91.19
KOG2247|consensus	615		91.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.18
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.68
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.62
KOG4460|consensus	741		89.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.24
KOG3616|consensus	1636		89.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.07
PHA03098	534	kelch-like protein; Provisional	88.66
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.62
COG5167	776	VID27 Protein involved in vacuole import and degra	88.11
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	87.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.85
KOG1900|consensus	1311		87.12
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.93
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.94
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.48
PHA02790	480	Kelch-like protein; Provisional	85.45
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.38
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.16
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.93
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	83.62
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	83.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	82.89
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.83
KOG3616|consensus	1636		82.7
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.64
KOG2247|consensus	615		82.27
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.24
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.65
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	81.56
TIGR03054	135	photo_alph_chp1 putative photosynthetic complex as	81.54
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	81.42
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	81.17
PHA02790	480	Kelch-like protein; Provisional	80.78
COG1520	370	FOG: WD40-like repeat [Function unknown]	80.14

>KOG0263|consensus

Probab=99.96  E-value=9.7e-29  Score=156.33  Aligned_cols=112  Identities=29%  Similarity=0.587  Sum_probs=108.4

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +.|+.|+|+..++++|+.|.+|++||..+|..++.|.+|.++|.+++++ |+|.++++|+.||.|.+||+.+++.+..+.
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~  616 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLIKIWDLANGSLVKQLK  616 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc-CCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence            4689999999999999999999999999999999999999999999999 799999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|++.+.++.|+.+|..|++++.|.+|++||+.
T Consensus       617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            999999999999999999999999999999973

>KOG0272|consensus

Probab=99.96  E-value=7.3e-29  Score=148.60  Aligned_cols=111  Identities=29%  Similarity=0.527  Sum_probs=107.3

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .-++|+|+|+++++++.|.+-++||+.++..+...++|...|.+++|. ++|.++++|+.|..-++||++++.++..+.+
T Consensus       265 s~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  265 SRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             eeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec-CCCceeeccCccchhheeecccCcEEEEecc
Confidence            357899999999999999999999999999999999999999999999 8999999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |..+|.+++|+|+|..+++|+.|++++|||+|
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            99999999999999999999999999999986

>KOG0271|consensus

Probab=99.95  E-value=9e-27  Score=138.84  Aligned_cols=110  Identities=33%  Similarity=0.572  Sum_probs=102.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc-ceeecc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-IQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~-~~~~~~   81 (113)
                      +++|+|++..+++|+.|.++|+||..+..+.++.++|...|.+++|+ |++..+++|+.||.|++||.++++. ...+.+
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~g~~l~g  198 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQIGRALRG  198 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcccccccC
Confidence            56799999999999999999999999999999999999999999999 8999999999999999999998865 478899


Q ss_pred             cccceEEEEEcc-----CCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSP-----DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~-----~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |...|.+++|.|     ..+.+++++.||.++|||+.
T Consensus       199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK  235 (480)
T ss_pred             cccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence            999999999976     66789999999999999973

>KOG0266|consensus

Probab=99.94  E-value=7.7e-26  Score=142.00  Aligned_cols=111  Identities=34%  Similarity=0.662  Sum_probs=104.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeC-CCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDI-KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..++|+|+++++++++.|+++++||+ ..+..++++++|...|++++|+ +.++.+++|+.|++|++||+++++++..+.
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence            45789999999999999999999999 5558899999999999999999 667999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|.+.|..++|+++++++++++.|+.+++||+.
T Consensus       286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            999999999999999999999999999999974

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=3.2e-25  Score=139.74  Aligned_cols=111  Identities=22%  Similarity=0.385  Sum_probs=100.2

Q ss_pred             cceEcC-CCCEEEeeecCCeEEEeeCCCC-------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           3 VPRVTS-SPQRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         3 ~~~~~~-~~~~~~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      .++|+| +++++++++.|++|++||+.++       +++..+.+|...|.+++|+|..+..+++++.|+.|++||+.+++
T Consensus        80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~  159 (493)
T PTZ00421         80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK  159 (493)
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence            467888 7889999999999999998764       35678889999999999996556799999999999999999998


Q ss_pred             cceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+..+..|...|.+++|+|+|+.+++++.|+.|++||++
T Consensus       160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r  198 (493)
T PTZ00421        160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR  198 (493)
T ss_pred             EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence            888888899999999999999999999999999999975

>KOG0286|consensus

Probab=99.94  E-value=1.5e-25  Score=129.64  Aligned_cols=111  Identities=33%  Similarity=0.664  Sum_probs=104.3

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.|.. +.++++++.|.+..+||+++++.+..+.+|.+-|.+++++|.+++.+++|+-|+..++||++.+.+.+++.+
T Consensus       149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g  227 (343)
T KOG0286|consen  149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG  227 (343)
T ss_pred             EEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence            4556666 667889999999999999999999999999999999999976999999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |++.|++++|.|+|.-|++|++|++.++||+|
T Consensus       228 hesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  228 HESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             cccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            99999999999999999999999999999986

>KOG0272|consensus

Probab=99.94  E-value=7.9e-26  Score=135.73  Aligned_cols=110  Identities=31%  Similarity=0.469  Sum_probs=105.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ..++|.++|.++++|+.|..-+|||+++++++-.+.+|..+|..++|+ |+|..+++|+.|+++++||++....+.++.+
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceeccc
Confidence            357899999999999999999999999999999999999999999999 8999999999999999999999988999999


Q ss_pred             cccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      |..-|..+.|+| .|.+|++++.|+++++|..
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            999999999999 8889999999999999975

>KOG0263|consensus

Probab=99.94  E-value=6e-26  Score=143.85  Aligned_cols=110  Identities=25%  Similarity=0.460  Sum_probs=105.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .+.|+|.|-++++++.|++.++|......+++.+.+|.+-+.|++|+ |+..++++|+.|.+|++||+.++..++.+.+|
T Consensus       498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH  576 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH  576 (707)
T ss_pred             eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence            36789999999999999999999999999999999999999999999 88999999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .++|.+++|||+|++|++|+.|+.|++||+.
T Consensus       577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             CCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            9999999999999999999999999999973

>KOG0291|consensus

Probab=99.93  E-value=3.7e-25  Score=140.65  Aligned_cols=111  Identities=32%  Similarity=0.530  Sum_probs=100.9

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-------
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-------   73 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-------   73 (113)
                      |++.+++|+|+++++|++||+|++||...+-+..++..|+..|+.+.|+ ..++.+++.+.||+|+.||+...       
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            4678899999999999999999999999999999999999999999999 88999999999999999995433       


Q ss_pred             -------------------------------------ccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          74 -------------------------------------ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 -------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                           +.+-.+.+|+++|.+++|+|.+..|++++.|.+|++||+
T Consensus       432 ~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  432 SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence                                                 334445789999999999999999999999999999986

>KOG0284|consensus

Probab=99.93  E-value=2.3e-25  Score=133.43  Aligned_cols=112  Identities=29%  Similarity=0.494  Sum_probs=106.0

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +...+|+|++..|+++++|++|+|||....+....+.+|...|.+++|+ |...++++++.|+.|++||.+++.++.++.
T Consensus       183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~kgLiasgskDnlVKlWDprSg~cl~tlh  261 (464)
T KOG0284|consen  183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PTKGLIASGSKDNLVKLWDPRSGSCLATLH  261 (464)
T ss_pred             hheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-CccceeEEccCCceeEeecCCCcchhhhhh
Confidence            3567899999999999999999999999888888889999999999999 777899999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .|+..|..+.|+|++++|++++.|..++++|+|
T Consensus       262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             hccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            999999999999999999999999999999985

>KOG0271|consensus

Probab=99.93  E-value=3e-25  Score=132.39  Aligned_cols=109  Identities=31%  Similarity=0.561  Sum_probs=105.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      +-+.|+|+++++++++.|..|++|+.++|+-+.++++|-.+|..++|+ .+.+++++++.|.++++||+++.+....+.+
T Consensus       371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws-aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG  449 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS-ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG  449 (480)
T ss_pred             eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEec-cCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence            456899999999999999999999999999999999999999999999 8899999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      |...|+++.|+|||..+++++.|..+++|.
T Consensus       450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999995

>KOG0319|consensus

Probab=99.92  E-value=2.6e-24  Score=136.21  Aligned_cols=112  Identities=27%  Similarity=0.498  Sum_probs=108.2

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +++++++|+++++++|+.|++.++|+++......++.+|+..+.++.|+ ++.+.+++++.|++|++|.+.+..++.++.
T Consensus       466 IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  466 INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGDKTVKIWSISTFSCLKTFE  544 (775)
T ss_pred             ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEec-cccceeEeccCCceEEEEEeccceeeeeec
Confidence            5789999999999999999999999999999999999999999999999 888999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|...|...+|-.+|..|++++.||.+++|+++
T Consensus       545 GH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  545 GHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             CccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            999999999999999999999999999999974

>KOG0266|consensus

Probab=99.92  E-value=1.6e-23  Score=131.68  Aligned_cols=111  Identities=26%  Similarity=0.575  Sum_probs=101.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc--cceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--CIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~--~~~~~   79 (113)
                      .+++|+|+++++++|+.|++|++||++++++...+.+|...|++++|+ +++..+++++.|+.+++||+.++.  ++..+
T Consensus       250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  328 (456)
T KOG0266|consen  250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLL  328 (456)
T ss_pred             EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence            467899999999999999999999999999999999999999999999 889999999999999999999998  45666


Q ss_pred             ccccc--ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSA--EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..+..  ++..++|+|++.++++++.|+.+++||++
T Consensus       329 ~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  329 SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            65544  48999999999999999999999999974

>KOG0279|consensus

Probab=99.92  E-value=1.4e-23  Score=120.74  Aligned_cols=109  Identities=32%  Similarity=0.485  Sum_probs=96.8

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc-
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-   82 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~-   82 (113)
                      +..++++++.++++.|+++++||+.+++..+.|.+|..-|.+++++ ++...+++|+.|.++++|+............. 
T Consensus        69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~  147 (315)
T KOG0279|consen   69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH  147 (315)
T ss_pred             eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeeecccEEEEEecCCC
Confidence            5678999999999999999999999999999999999999999999 88999999999999999998766544333332 


Q ss_pred             ccceEEEEEccC--CCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPD--QSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~--~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...|.++.|+|+  ..++++++.|+++++||++
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~  180 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLR  180 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence            678999999997  6789999999999999985

>KOG0273|consensus

Probab=99.92  E-value=7.3e-24  Score=128.90  Aligned_cols=113  Identities=25%  Similarity=0.406  Sum_probs=103.7

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCC--------CCCEEEEEeCCCcEEEEeCCc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP--------YGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +++..|+|.+.+|+++++|++++||+.........+..|...|..+.|+|.        .+..+++++.|++|++||+..
T Consensus       362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            356789999999999999999999999888888999999999999999962        235789999999999999999


Q ss_pred             cccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.++.++..|..+|++++|+|+|+++++|+.||.|++|+++
T Consensus       442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence            99999998899999999999999999999999999999864

>KOG0316|consensus

Probab=99.91  E-value=1.7e-23  Score=118.53  Aligned_cols=111  Identities=31%  Similarity=0.482  Sum_probs=106.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.++-+|++.++++.|++|++||...+.+++++.+|...|.+++.+ .++..+++++.|..+.+||+.+++.++.+.+
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s-~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALS-SDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccc-ccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            456789999999999999999999999999999999999999999999 8889999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |...|+.++|+.+...+++++.|.++++||-|
T Consensus       100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen  100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             ccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence            99999999999999999999999999999964

>KOG0285|consensus

Probab=99.91  E-value=1.4e-23  Score=124.58  Aligned_cols=111  Identities=28%  Similarity=0.432  Sum_probs=106.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++++.|..+.|++|+.|++++|||+.+++...++.+|...|..++++ +...++.+++.|+.|+.||+...+.++.+.+
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec-ccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence            567899999999999999999999999999999999999999999999 7788999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |-+.|++++.+|.-+.+++++.|.++++||+|
T Consensus       234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiR  265 (460)
T KOG0285|consen  234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR  265 (460)
T ss_pred             ccceeEEEeccccceeEEecCCcceEEEeeec
Confidence            99999999999999999999999999999986

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.5e-22  Score=129.00  Aligned_cols=110  Identities=13%  Similarity=0.286  Sum_probs=93.1

Q ss_pred             cceEcCC-CCEEEeeecCCeEEEeeCCCCe--------eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           3 VPRVTSS-PQRCLTGSYDRTCKLWDIKSGH--------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         3 ~~~~~~~-~~~~~~~~~d~~v~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .++|+|+ ++++++|+.|+.|++|++.++.        ++..+.+|...|.+++|+|.....+++++.|+.|++||++++
T Consensus        79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg  158 (568)
T PTZ00420         79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE  158 (568)
T ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence            4678886 7899999999999999997542        344678899999999999544445679999999999999998


Q ss_pred             ccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.+..+. +...+.+++|+|+|+.+++++.|+.+++||++
T Consensus       159 ~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        159 KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence            8776665 55789999999999999999999999999975

>KOG0295|consensus

Probab=99.91  E-value=3.7e-23  Score=122.56  Aligned_cols=112  Identities=29%  Similarity=0.474  Sum_probs=103.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC--------------CCCCEEEEEeCCCcEEE
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE--------------PYGDKILTGSFDKTLKL   67 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~~v~~   67 (113)
                      .+++++.+|.++++++.|.++++|-..++++...+..|..++.+++|.|              ..++.+.+++.|++|++
T Consensus       239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            3567788999999999999999999999988899999999999999986              12358899999999999


Q ss_pred             EeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ||+.++.++.++.+|...|..++|+|.|++++++.+|+++++||++
T Consensus       319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            9999999999999999999999999999999999999999999974

>KOG0279|consensus

Probab=99.91  E-value=1e-22  Score=117.30  Aligned_cols=110  Identities=31%  Similarity=0.405  Sum_probs=97.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCC--CCeEEEEEEcCCC-CCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGH--QNVVYAVAFSEPY-GDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      .++++++...+++|+.|.++++||+. +.+..++..+  .+.|.++.|+|.. ...+++++.|+++++||+++.+....+
T Consensus       110 sva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~  188 (315)
T KOG0279|consen  110 SVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF  188 (315)
T ss_pred             EEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence            46789999999999999999999987 4444444433  7889999999554 678999999999999999999999999


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|.+.++.+.+||||...++|+.||.+.+||++
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence            9999999999999999999999999999999985

>KOG0275|consensus

Probab=99.89  E-value=1.1e-23  Score=124.33  Aligned_cols=110  Identities=27%  Similarity=0.496  Sum_probs=104.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      |.+|+.+.+++++|+.||.|++|.+.+|.+++.++ .|...|+++.|+ .++..+.+++.|.++++.-+++++++..+++
T Consensus       268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG  346 (508)
T KOG0275|consen  268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRG  346 (508)
T ss_pred             EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcC
Confidence            56788889999999999999999999999999987 799999999999 8899999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.+.|+...|+++|+++++++.||++++|+.+
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence            99999999999999999999999999999863

>KOG0269|consensus

Probab=99.89  E-value=2e-22  Score=128.47  Aligned_cols=110  Identities=25%  Similarity=0.469  Sum_probs=100.7

Q ss_pred             cceEcC-CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeec
Q psy3639           3 VPRVTS-SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYR   80 (113)
Q Consensus         3 ~~~~~~-~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~   80 (113)
                      ..+|++ .++++++|++||.|++||++..+...++.+....|.+++|+|..+..|+++...|.+++||++.. ++...+.
T Consensus       138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~  217 (839)
T KOG0269|consen  138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT  217 (839)
T ss_pred             eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence            445655 45789999999999999999999999999889999999999999999999999999999999875 5778889


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +|.++|.++.|+|++.+|++|+.|++++|||+
T Consensus       218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             cccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            99999999999999999999999999999996

>KOG0286|consensus

Probab=99.89  E-value=9.1e-22  Score=114.17  Aligned_cols=108  Identities=27%  Similarity=0.500  Sum_probs=99.6

Q ss_pred             ceEcC-CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           4 PRVTS-SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         4 ~~~~~-~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      ..++| +++.+++|+-|+..++||++.+.+.++|.+|..-|..++|. |+|.-+++|+.|+++++||++..+.+..+...
T Consensus       192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~  270 (343)
T KOG0286|consen  192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHD  270 (343)
T ss_pred             EecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence            45677 88999999999999999999999999999999999999999 88999999999999999999998877777633


Q ss_pred             --ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 --SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 --~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                        ..+|.+++||..|++|+.|..|....+||.
T Consensus       271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             cccCCceeEEEcccccEEEeeecCCceeEeec
Confidence              458999999999999999999999999996

>KOG0283|consensus

Probab=99.88  E-value=1.5e-22  Score=129.28  Aligned_cols=107  Identities=24%  Similarity=0.581  Sum_probs=94.7

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCC--------------------------------C--------------------
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKS--------------------------------G--------------------   30 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~--------------------------------~--------------------   30 (113)
                      ++.|+++|+++|+|++|+.|+||.+..                                .                    
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            567999999999999999999998754                                0                    


Q ss_pred             --------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEcc-CCCEEEEe
Q psy3639          31 --------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSC  101 (113)
Q Consensus        31 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~  101 (113)
                              +++..+.+|.+.|.++.|+ . .++|++++.|.+|++|++...+++..|. |...|++++|+| |.++|++|
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWS-K-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWS-K-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             Cccccccccchhhhhccchhheecccc-c-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeec
Confidence                    1223455899999999998 4 5788999999999999999999999998 899999999999 88999999


Q ss_pred             ecCCcEEEeec
Q psy3639         102 SMDHTARIFNT  112 (113)
Q Consensus       102 ~~~~~i~~~~~  112 (113)
                      +-|+.++||++
T Consensus       429 SLD~KvRiWsI  439 (712)
T KOG0283|consen  429 SLDGKVRLWSI  439 (712)
T ss_pred             ccccceEEeec
Confidence            99999999986

>KOG0319|consensus

Probab=99.88  E-value=6.6e-22  Score=125.52  Aligned_cols=108  Identities=25%  Similarity=0.404  Sum_probs=104.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      ++.|++.++.+++++.|++|+||.+.+.++++++.+|+..|....|- .++..+++++.||.+++|++++..++.++..|
T Consensus       510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~-~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI-RNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee-eCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            57899999999999999999999999999999999999999999999 88999999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +..|++++-+|.+..+++|+.||.|.+|.
T Consensus       589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  589 NDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             cceeEEEeecCccceeEecCCCeEEEEee
Confidence            99999999999999999999999999993

>KOG0315|consensus

Probab=99.88  E-value=1.3e-21  Score=111.62  Aligned_cols=109  Identities=26%  Similarity=0.452  Sum_probs=97.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      +...+.|+++.|++++. ..||+||+.++.  ++.++++|+..|..+.|. .+++.+++|++||++++||++...+.+.+
T Consensus        44 NrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~  121 (311)
T KOG0315|consen   44 NRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNY  121 (311)
T ss_pred             eeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhc
Confidence            45678899999999886 469999998875  588999999999999999 89999999999999999999997766666


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      + +..+|+++..+|+...|+++..+|.|++||++
T Consensus       122 ~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen  122 Q-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             c-CCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            6 66899999999999999999999999999984

>KOG0302|consensus

Probab=99.88  E-value=2.1e-21  Score=115.85  Aligned_cols=107  Identities=21%  Similarity=0.447  Sum_probs=92.0

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc---cccc
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK---EECI   76 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~---~~~~   76 (113)
                      .+|+|..+ .|++++-|+.|+|||++.+   ..+.+ +.|..-|.-+.|+ ....++++|+.||++++||+++   ++++
T Consensus       263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~~pV  340 (440)
T KOG0302|consen  263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSGQPV  340 (440)
T ss_pred             hccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCCCcc
Confidence            36778664 8889999999999999987   34444 6799999999999 5556999999999999999976   4677


Q ss_pred             eeecccccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..++.|..+|.++.|+| +...+++++.|++|.+||+
T Consensus       341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            89999999999999999 5567889999999999997

>KOG0273|consensus

Probab=99.88  E-value=2.1e-21  Score=118.35  Aligned_cols=109  Identities=28%  Similarity=0.490  Sum_probs=96.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-------
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-------   74 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-------   74 (113)
                      ...+|+.+|.+|++|.+||.+++|+.. +..+.++..|++||.+++|+ ..+.++++++.|+++.+||..+++       
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence            456778889999999999999999965 88888998999999999999 899999999999999999964332       


Q ss_pred             ----------------------------------cceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 ----------------------------------CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                        ++.++.+|.++|..+.|+|.|..|++++.|+++++|..
T Consensus       317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence                                              23344678999999999999999999999999999985

>KOG0281|consensus

Probab=99.88  E-value=1.7e-22  Score=120.02  Aligned_cols=104  Identities=23%  Similarity=0.445  Sum_probs=96.4

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA   84 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~   84 (113)
                      .+..+.+++++++.|.++++|++.+++.+.++.+|...|-|+...   ++++++|+.|.+|++||+..+.+++.+++|+.
T Consensus       325 vVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe  401 (499)
T KOG0281|consen  325 VVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  401 (499)
T ss_pred             eeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHH
Confidence            345677899999999999999999999999999999999999876   89999999999999999999999999999999


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      -|.++.|  +.+.+++|..||+|++||+.
T Consensus       402 LvRciRF--d~krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             hhhheee--cCceeeeccccceEEEEecc
Confidence            9999999  56789999999999999973

>KOG0315|consensus

Probab=99.88  E-value=2.2e-21  Score=110.66  Aligned_cols=110  Identities=25%  Similarity=0.495  Sum_probs=88.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-------
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-------   74 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-------   74 (113)
                      ..+.|..+|+.+++|++||+++|||++...+.+.++ |..+|.++..+ |+...++++..+|.|++||+....       
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEec-CCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            345678899999999999999999999865555555 78999999999 666777889999999999964431       


Q ss_pred             ------------------------------------------cceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 ------------------------------------------CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 ------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                                ++.+++.|++.+....+||++++|++++.|.+++||++
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence                                                      12334567778888889999999999999999999986


Q ss_pred             C
Q psy3639         113 M  113 (113)
Q Consensus       113 ~  113 (113)
                      +
T Consensus       245 ~  245 (311)
T KOG0315|consen  245 D  245 (311)
T ss_pred             C
Confidence            3

>KOG0276|consensus

Probab=99.88  E-value=3.4e-21  Score=121.08  Aligned_cols=113  Identities=27%  Similarity=0.375  Sum_probs=104.3

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      +.+++++|...+++++++|-+|++||.+.. .+.+++++|..-|.+++|+|.+.+.+++++.|++|++|.+.+..+..++
T Consensus       100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl  179 (794)
T KOG0276|consen  100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL  179 (794)
T ss_pred             eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence            457789999999999999999999998754 6788999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEEEcc--CCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSP--DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|...|+++.|-+  +..++++|+.|.++++||..
T Consensus       180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             eccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence            99999999999987  44699999999999999963

>PTZ00421 coronin; Provisional

Probab=99.88  E-value=1e-20  Score=119.59  Aligned_cols=111  Identities=14%  Similarity=0.276  Sum_probs=96.1

Q ss_pred             CcceEcCCC-CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSP-QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..++|+|++ +++++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++..+++++.|+.|++||+++++.+..+.
T Consensus       129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            356788875 699999999999999999999999999999999999999 789999999999999999999998888888


Q ss_pred             ccccc-eEEEEEccCCCEEEEee----cCCcEEEeecC
Q psy3639          81 GHSAE-VVGVTFSPDQSTFCSCS----MDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~-v~~~~~~~~~~~~~~~~----~~~~i~~~~~~  113 (113)
                      .|.+. ...+.|.+++..+++++    .|+.|++||++
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            77653 45678999888777654    47899999975

>KOG0318|consensus

Probab=99.88  E-value=7.7e-21  Score=117.31  Aligned_cols=111  Identities=26%  Similarity=0.460  Sum_probs=100.0

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee---CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc--
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC--   75 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~--   75 (113)
                      +++++++|+|+++++.+.||++.+||-.+++.+..+.   .|++.|.+++|+ |++..+++.+.|.++++||+.+.++  
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEE
Confidence            4688999999999999999999999999999999987   799999999999 8899999999999999999755433  


Q ss_pred             -----------------------------------------ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 -----------------------------------------IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                               +..+.+|...|.++..+|++.++++++.||.|.-|+.
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence                                                     2233578899999999999999999999999999986

>KOG0282|consensus

Probab=99.88  E-value=2.5e-22  Score=122.46  Aligned_cols=110  Identities=25%  Similarity=0.465  Sum_probs=99.6

Q ss_pred             CcceEcC-CCCEEEeeecCCeEEEeeCCC-CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTS-SPQRCLTGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~-~~~~~~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      .++.|.| .++++++++.|+.|+||++.. +++++++.+|..+|.+++|+ ..+..+.+++.|+.+++||..+|+++..+
T Consensus       218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~~f  296 (503)
T KOG0282|consen  218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN-NCGTSFLSASFDRFLKLWDTETGQVLSRF  296 (503)
T ss_pred             chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc-ccCCeeeeeecceeeeeeccccceEEEEE
Confidence            3455667 789999999999999999876 78999999999999999999 88999999999999999999999999988


Q ss_pred             cccccceEEEEEccCC-CEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~  113 (113)
                      . ....+.++.|+|++ +.+++|+.|+.|+.||+|
T Consensus       297 ~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  297 H-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             e-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence            7 34567899999988 889999999999999986

>KOG0645|consensus

Probab=99.87  E-value=1.3e-20  Score=108.42  Aligned_cols=110  Identities=28%  Similarity=0.530  Sum_probs=100.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC--eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc---ccc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE---ECI   76 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~---~~~   76 (113)
                      .-++++|.+++|++++.|.++.||.-..+  +++.++++|...|.+++|+ .+|++|++++.|..|-+|.+...   ++.
T Consensus        65 RsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   65 RSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             eeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence            34689999999999999999999987644  6889999999999999999 88999999999999999998754   567


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..++.|.+.|..+.|+|....|++++.|++|++|+-
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            888999999999999999999999999999999963

>KOG0264|consensus

Probab=99.87  E-value=3.4e-21  Score=116.47  Aligned_cols=110  Identities=24%  Similarity=0.352  Sum_probs=96.4

Q ss_pred             ceEcCC-CCEEEeeecCCeEEEeeCC--CCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceee
Q psy3639           4 PRVTSS-PQRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTY   79 (113)
Q Consensus         4 ~~~~~~-~~~~~~~~~d~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~   79 (113)
                      ++|++. ..+|++.++|+.+.|||++  +.++....+.|.+++.+++|+|.++..+++|+.|++|.+||+++. +++.++
T Consensus       233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence            345554 4588999999999999999  566777888899999999999999999999999999999999985 578899


Q ss_pred             cccccceEEEEEccC-CCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPD-QSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|+..|..+.|+|. ...|++++.|+.+.+||+.
T Consensus       313 e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             cCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            999999999999994 4567889999999999973

>KOG0285|consensus

Probab=99.87  E-value=2e-21  Score=115.56  Aligned_cols=109  Identities=25%  Similarity=0.470  Sum_probs=102.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      +++++...++.++++|+.|+.||++..+.++.+.+|-..|.+++.+ |.-..+++++.|.++++||+++...+..+.+|.
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~  277 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT  277 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence            5678888899999999999999999999999999999999999999 778899999999999999999999999999999


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|.++.+.|-.-.+++++.|++|++||++
T Consensus       278 ~~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  278 NPVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             CcceeEEeecCCCceEEecCCceEEEeeec
Confidence            999999999877779999999999999985

>KOG0284|consensus

Probab=99.87  E-value=6.9e-22  Score=118.73  Aligned_cols=110  Identities=34%  Similarity=0.516  Sum_probs=103.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .+++|+|...++++++.|..|++||.++++++.++.+|+..|..+.|+ +++++|++++.|..++++|+++.+.++.+++
T Consensus       226 ksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~  304 (464)
T KOG0284|consen  226 KSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRG  304 (464)
T ss_pred             ceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence            467899999999999999999999999999999999999999999999 7789999999999999999999999999999


Q ss_pred             cccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      |+..+.++.|+| ....|.+++.||.+..|.+
T Consensus       305 Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v  336 (464)
T KOG0284|consen  305 HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV  336 (464)
T ss_pred             chhhheeeccccccccceeeccCCCceEEEec
Confidence            999999999999 6667889999999999975

>KOG0265|consensus

Probab=99.87  E-value=7e-21  Score=110.75  Aligned_cols=111  Identities=23%  Similarity=0.344  Sum_probs=97.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCC-CCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ....|+|++..|++|+.|..|.+|+.. ..+....+++|.+.|..+.+. +++..+++++.|.+++.||.++++..+.++
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec-cCCCEEEEecCCceEEEEecccceeeehhc
Confidence            456899999999999999999999954 445677888999999999999 889999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCC-EEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQS-TFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~  113 (113)
                      +|..-++.+.-+..|. .+.+++.|+++++||+|
T Consensus       130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             cccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            9999988887544444 45678889999999986

>KOG0277|consensus

Probab=99.87  E-value=1.1e-20  Score=108.06  Aligned_cols=104  Identities=26%  Similarity=0.459  Sum_probs=94.5

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      .+.+++++.|++|++|+...+..+.++.+|...|...+|+|..++++++++.|+++++||++..-....+..|...+.++
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            45788889999999999999999999999999999999999999999999999999999998765455588888899999


Q ss_pred             EEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .|+. +.+.+++++.|+.|+.||+|
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir  221 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIR  221 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehh
Confidence            9998 67788999999999999986

>KOG0277|consensus

Probab=99.87  E-value=4.3e-21  Score=109.69  Aligned_cols=110  Identities=27%  Similarity=0.490  Sum_probs=98.6

Q ss_pred             ceEcCCC-CEEEeeecCCeEEEeeCCC-CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSP-QRCLTGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~-~~~~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ++|+++. +.+++++.||.+++||... .++++.++.|...|.++.|++...+.+++++-|++|++|+....+.+.++.+
T Consensus        66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g  145 (311)
T KOG0277|consen   66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG  145 (311)
T ss_pred             eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence            3566654 5788899999999999643 3578889999999999999988889999999999999999999999999999


Q ss_pred             cccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |...|+..+|+| .++.+++++.|+++++||++
T Consensus       146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             CccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            999999999999 78899999999999999985

>KOG0292|consensus

Probab=99.86  E-value=4.9e-21  Score=124.26  Aligned_cols=110  Identities=26%  Similarity=0.444  Sum_probs=105.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .-++|+|++.++++|++|-+|++|+.++.+++.++.+|-.-|..+.|+ +.-.++++++.|.+|++|+.++.+++..+.+
T Consensus        55 Rgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwqsr~~iavltG  133 (1202)
T KOG0292|consen   55 RGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQSRKCIAVLTG  133 (1202)
T ss_pred             ceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence            456899999999999999999999999999999999999999999999 7788999999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      |...|-+-+|+|....+++++-|.+|++||+
T Consensus       134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             CceEEEeeccCCccceEEEecccceEEEEee
Confidence            9999999999999999999999999999997

>KOG0282|consensus

Probab=99.86  E-value=4.4e-21  Score=117.06  Aligned_cols=110  Identities=25%  Similarity=0.477  Sum_probs=101.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      -++|+.++..+++++.|+.+++||+++|+++..+. ....+.++.++|.+.+.+++|+.|+.|+.||+++++.++.+..|
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h  341 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH  341 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence            35788999999999999999999999999999987 56678999999766689999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      -+.+..+.|-++|+.+++.++|+.+++|+.+
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~  372 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENR  372 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence            9999999999999999999999999999853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=5e-20  Score=122.35  Aligned_cols=109  Identities=18%  Similarity=0.362  Sum_probs=96.2

Q ss_pred             ceEcC-CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           4 PRVTS-SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         4 ~~~~~-~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .+|++ .+..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|.++..+++++.|+.|++||++++..+..+..+
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~  617 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK  617 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence            45554 46789999999999999999999999999999999999999778899999999999999999998887777643


Q ss_pred             ccceEEEEEc-cCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFS-PDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~-~~~~~~~~~~~~~~i~~~~~~  113 (113)
                       ..+.++.|+ ++|.++++++.|+.|++||++
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~  648 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLR  648 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence             578889995 579999999999999999974

>KOG0647|consensus

Probab=99.86  E-value=1.1e-20  Score=110.12  Aligned_cols=111  Identities=23%  Similarity=0.443  Sum_probs=94.0

Q ss_pred             CCcceEcCCC-CEEEeeecCCeEEEeeCCCC-ee-eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           1 MGVPRVTSSP-QRCLTGSYDRTCKLWDIKSG-HE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~~d~~v~i~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      |..++|+|.. .+++.++.|++||+|++... .. -.....|.+++.+++|+ .++..+++++.|+.+++||+.+++ +.
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S~Q-~~  107 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLASGQ-VS  107 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccCCC-ee
Confidence            3567899954 56668999999999998763 32 24455699999999999 889999999999999999999996 67


Q ss_pred             eecccccceEEEEEccCCC--EEEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVGVTFSPDQS--TFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~  113 (113)
                      +...|..+|..+.|-+...  .|++|+.|.+|++||+|
T Consensus       108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R  145 (347)
T KOG0647|consen  108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR  145 (347)
T ss_pred             eeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence            7777999999999987555  78999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=4.4e-20  Score=122.65  Aligned_cols=111  Identities=12%  Similarity=0.282  Sum_probs=94.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC----e----eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG----H----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~----~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      ..++|+|+++++++|+.|+.|++|+....    .    +...+. +...+.+++|+|..+..+++++.||.|++||+.++
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~  565 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS  565 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence            35689999999999999999999997531    1    222333 34678999999777889999999999999999999


Q ss_pred             ccceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          74 ECIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.+..+.+|...|++++|+| ++.+|++++.|+.|++||++
T Consensus       566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            88899999999999999997 78999999999999999974

>KOG0295|consensus

Probab=99.86  E-value=3.6e-20  Score=110.06  Aligned_cols=103  Identities=34%  Similarity=0.551  Sum_probs=97.7

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      ++.+.+++.|++|++||+.++.++.++.+|.+.|..++|+ |.|++++++..|+++++||++..++...+..|+.-+.++
T Consensus       304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            3689999999999999999999999999999999999999 889999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|+.+..++++|+-|.++++|.-|
T Consensus       383 Dfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  383 DFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             ecCCCCceEEeccccceeeeeecC
Confidence            999988899999999999999743

>KOG0645|consensus

Probab=99.86  E-value=5.6e-20  Score=105.84  Aligned_cols=110  Identities=28%  Similarity=0.432  Sum_probs=99.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC---cccc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA---KEEC   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~---~~~~   75 (113)
                      .+++|+++|++||+++.|+.|-+|.+..+   ++...++.|..-|..+.|+ |...+|++++.|++|++|+-.   ..++
T Consensus       109 K~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c  187 (312)
T KOG0645|consen  109 KCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWEC  187 (312)
T ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeE
Confidence            57899999999999999999999998744   4678889999999999999 678899999999999999765   3478


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.++.+|+..|++++|++.|..+++++.|++++||.+
T Consensus       188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             EEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            8999999999999999999999999999999999973

>KOG0283|consensus

Probab=99.86  E-value=1.4e-20  Score=120.41  Aligned_cols=109  Identities=21%  Similarity=0.384  Sum_probs=96.0

Q ss_pred             cceEcCCC-CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           3 VPRVTSSP-QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      +..+++.. ++|++++-|++|++|++....++.+|. |...|+|++|+|.+.++|++|+.||++++|++...+.+.-.. 
T Consensus       372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-  449 (712)
T KOG0283|consen  372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-  449 (712)
T ss_pred             heecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-
Confidence            34455544 588999999999999999999999998 999999999999999999999999999999998887655554 


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      -..-|.+++|.|+|++.++|+.+|..++|+++
T Consensus       450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             hhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            34678999999999999999999999999864

>KOG0289|consensus

Probab=99.86  E-value=4.8e-20  Score=111.72  Aligned_cols=110  Identities=21%  Similarity=0.331  Sum_probs=99.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC--CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG--HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ....+|+++++++++.|++..+.|+.+++.+.....  ..-.+++.+|+ |+|.+|.+|..|+.+++||+.+...+..|.
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks~~~~a~Fp  386 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKSQTNVAKFP  386 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCceEEeccCCCceEEEEEcCCccccccCC
Confidence            345789999999999999999999999987765542  22358999999 899999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|+++|..++|+.+|-++++++.|+.|++||+|
T Consensus       387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             CCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            999999999999999999999999999999986

>KOG0275|consensus

Probab=99.85  E-value=9.7e-22  Score=116.15  Aligned_cols=110  Identities=25%  Similarity=0.459  Sum_probs=99.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe--------eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY--------RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      -|..|+|+++++++|+.||.|.+||..+|+....+        --+...|.|+.|+ .+...+++|+.||.|++|.+.++
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEEEEEecc
Confidence            36789999999999999999999999988754433        2467889999999 88999999999999999999999


Q ss_pred             ccceeec-ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          74 ECIQTYR-GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+++.+. .|...|.++.|+.|+..+++++.|.++++.-+
T Consensus       296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            9999997 78999999999999999999999999998755

>KOG0276|consensus

Probab=99.85  E-value=7.9e-21  Score=119.47  Aligned_cols=110  Identities=31%  Similarity=0.483  Sum_probs=100.7

Q ss_pred             cceEcCCC-CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC-CCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           3 VPRVTSSP-QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-PYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      .++|+|.+ +.+++++-|++|++|++.+..+.+++++|...|.++.+-+ .+..++++|+.|.++++||.++..++.++.
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe  224 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE  224 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh
Confidence            35677754 6999999999999999999999999999999999999873 234699999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +|...|..+.|+|.-..+++|++||++++|+.
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecC
Confidence            99999999999999999999999999999974

>KOG0310|consensus

Probab=99.85  E-value=4.7e-21  Score=116.92  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=99.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+|-.+|+++++|++.|.|++||+.+...+..+..|+.++..+.|+|.++..+++|+.|+.+++||+.+......+.+|+
T Consensus        74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht  153 (487)
T KOG0310|consen   74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT  153 (487)
T ss_pred             EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc
Confidence            46778899999999999999999777667889999999999999998888899999999999999999987666888999


Q ss_pred             cceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|.+.+|+| ++..+++|+.||.|++||+|
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            9999999999 45678999999999999986

>KOG0294|consensus

Probab=99.85  E-value=2.4e-20  Score=109.24  Aligned_cols=111  Identities=21%  Similarity=0.389  Sum_probs=102.2

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      .+.++.-++.++++|+.|.+|+|||+.....+..+-.|.+.++++.|.++.. ..+++|+.||.|.+|+....+++.+++
T Consensus        45 sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK  124 (362)
T KOG0294|consen   45 SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK  124 (362)
T ss_pred             ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence            3567788899999999999999999999999999999999999999985432 388999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +|...|+.++.+|.++..++.+.|+.++.||+
T Consensus       125 ~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen  125 AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             ccccccceeEecCCCceEEEEcCCceeeeehh
Confidence            99999999999999999999999999999997

>KOG0318|consensus

Probab=99.85  E-value=7.1e-20  Score=113.13  Aligned_cols=110  Identities=24%  Similarity=0.398  Sum_probs=98.5

Q ss_pred             CcceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +.+.+-|... +++++++|..|.+|+-...+-..++..|...|.++.++ |++..+++.+.||++.+||-.+++.+..+.
T Consensus       151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGktge~vg~l~  229 (603)
T KOG0318|consen  151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKTGEKVGELE  229 (603)
T ss_pred             eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence            3455666554 78999999999999876666667788899999999999 789999999999999999999999888887


Q ss_pred             ---ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 ---GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                         +|.+.|++++|+||+..+++++.|.++++||+
T Consensus       230 ~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  230 DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             CCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence               88999999999999999999999999999997

>KOG0278|consensus

Probab=99.85  E-value=6.4e-20  Score=104.99  Aligned_cols=106  Identities=27%  Similarity=0.421  Sum_probs=85.5

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe----------------------------------------EE
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------------------------------------VY   44 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----------------------------------------v~   44 (113)
                      -|...++-++++.+|++||+||.+++..++++. ...+                                        |.
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~  228 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVE  228 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccc
Confidence            455667788888999999999999998777665 2222                                        33


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          45 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +..++ |+...++.|+.|..++-||..+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|.+
T Consensus       229 SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  229 SASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ccccc-CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            44445 55577788888888888888888777775 789999999999999999999999999999975

>KOG0313|consensus

Probab=99.85  E-value=2.4e-20  Score=111.30  Aligned_cols=109  Identities=28%  Similarity=0.478  Sum_probs=98.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe---eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-cce
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQ   77 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~   77 (113)
                      .++..+|..+++++|+.|..+++||.+++.   ..+++.+|.+.|..+.|+|.+..+|++++.|+++++||+++.+ +++
T Consensus       304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply  383 (423)
T KOG0313|consen  304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY  383 (423)
T ss_pred             eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence            456678888999999999999999998764   4678889999999999999989999999999999999999987 899


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+.+|...|.++.|+ ++..+++|+.|.+++++.
T Consensus       384 dI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  384 DIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             eeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence            999999999999998 467899999999999985

>KOG0973|consensus

Probab=99.85  E-value=3.7e-20  Score=121.19  Aligned_cols=111  Identities=28%  Similarity=0.497  Sum_probs=102.3

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCC----------C--------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKS----------G--------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFD   62 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~----------~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (113)
                      ++|++|+++|++||+|++|+.|.+|....          +        +....+.+|...|.+++|+ |++.++++++.|
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~D  150 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLD  150 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEeccc
Confidence            46889999999999999999999999762          0        2456778999999999999 689999999999


Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ++|.+|+.++.+.+..+.+|.+.|..+.|.|-|++|++-+.|++|++|++
T Consensus       151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT  200 (942)
T ss_pred             ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEc
Confidence            99999999999999999999999999999999999999999999999985

>PTZ00420 coronin; Provisional

Probab=99.84  E-value=4.5e-19  Score=113.27  Aligned_cols=110  Identities=10%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             CcceEcCCCCE-EEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQR-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..++|+|++.. +++++.|+.|++||+.+++....+. +...+.+++|+ +++.++++++.|+.|++||+++++.+.++.
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            45688998875 5789999999999999988777776 66789999999 789999999999999999999999888888


Q ss_pred             ccccceE-----EEEEccCCCEEEEeecCC----cEEEeecC
Q psy3639          81 GHSAEVV-----GVTFSPDQSTFCSCSMDH----TARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~-----~~~~~~~~~~~~~~~~~~----~i~~~~~~  113 (113)
                      +|.+.+.     ...|++++.++++++.++    .|++||++
T Consensus       207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            8876432     234568889999887764    79999975

>KOG0310|consensus

Probab=99.84  E-value=1.8e-19  Score=110.18  Aligned_cols=109  Identities=21%  Similarity=0.402  Sum_probs=95.0

Q ss_pred             CcceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceee
Q psy3639           2 GVPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~   79 (113)
                      ..+.|+|+++ .+++|++|+.+++||+.+......+.+|+.-|.+.+++|.++..+++|+.||+|++||.+.. ..+.++
T Consensus       114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence            3567888765 77789999999999999888766889999999999999888889999999999999999987 566666


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      . |+.+|.++.+-|.|..+++++ .+.+++||+
T Consensus       194 n-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl  224 (487)
T KOG0310|consen  194 N-HGCPVESVLALPSGSLIASAG-GNSVKVWDL  224 (487)
T ss_pred             c-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEe
Confidence            6 889999999999999888775 578999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=7e-19  Score=103.30  Aligned_cols=111  Identities=35%  Similarity=0.567  Sum_probs=99.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ..++++|+++++++++.++.+++|+..+++....+..|...+..+.++ +++..+++++.+|.+++||+..++.+..+..
T Consensus        13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~   91 (289)
T cd00200          13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTLTG   91 (289)
T ss_pred             EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC-CCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence            456789999999999999999999999888888888899999999999 6678999999999999999998887888888


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +...+.++.|+|+++++++++.++.+.+||++
T Consensus        92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             cCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            88899999999998888888889999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=4.6e-19  Score=104.05  Aligned_cols=109  Identities=39%  Similarity=0.643  Sum_probs=98.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ...+++|+++.+++++.++.+++||+.+++.+..+..|...+.++.++ +++.++++++.++.+++||+.+++....+..
T Consensus       181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc-CCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence            356788999889998889999999999888888887888899999999 5688888888899999999998888888888


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +...+.+++|+|++..+++++.|+.+++|+
T Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888999999999999999999999999996

>KOG0265|consensus

Probab=99.83  E-value=1.2e-19  Score=105.64  Aligned_cols=109  Identities=25%  Similarity=0.398  Sum_probs=97.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      +.+..+++.+++++.|++++.||+++|+..+.+++|...+..+.-+.....++.+++.|+++++||+++..+++++. ..
T Consensus        96 l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~k  174 (338)
T KOG0265|consen   96 LHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NK  174 (338)
T ss_pred             eeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cc
Confidence            35788999999999999999999999999999999999999998664555677899999999999999998888886 33


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      -++.++.|..++..+++|+-|+.|++||+|
T Consensus       175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r  204 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLR  204 (338)
T ss_pred             eeEEEEEecccccceeeccccCceeeeccc
Confidence            467899999999999999999999999984

>KOG0305|consensus

Probab=99.83  E-value=1.5e-19  Score=112.59  Aligned_cols=111  Identities=23%  Similarity=0.361  Sum_probs=96.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC--CCcEEEEeCCcccc----
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEEC----   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~v~~wd~~~~~~----   75 (113)
                      +...|++++.++++|+.|..+.|||.....+...+..|.+.|..++|+|-...+|++|+.  |+.|++||..+++.    
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            456789999999999999999999998888899999999999999999988889988665  88999999655433    


Q ss_pred             ---------------------------------------ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 ---------------------------------------IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ---------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                             +..+.+|...|..++++|+|..+++++.|+++++|++
T Consensus       385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence                                                   2223578889999999999999999999999999975

>KOG0303|consensus

Probab=99.83  E-value=1.4e-19  Score=108.76  Aligned_cols=108  Identities=22%  Similarity=0.392  Sum_probs=97.6

Q ss_pred             eEcC-CCCEEEeeecCCeEEEeeCCCC-------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc
Q psy3639           5 RVTS-SPQRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI   76 (113)
Q Consensus         5 ~~~~-~~~~~~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~   76 (113)
                      +|+| +++.+|+|++|.+|.+|.+..+       +++..+.+|...|--++|+|.-.+.+++++.|++|.+|++.+++.+
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal  167 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL  167 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence            4555 5678999999999999998765       3567888999999999999888899999999999999999999988


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .++. |..-|+++.|+.+|..+++.+.|..|+|||.+
T Consensus       168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCC
Confidence            8888 88899999999999999999999999999964

>KOG0291|consensus

Probab=99.83  E-value=4.3e-19  Score=113.58  Aligned_cols=109  Identities=25%  Similarity=0.426  Sum_probs=99.9

Q ss_pred             ceEcCCCCEEEeeec-CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           4 PRVTSSPQRCLTGSY-DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +.++..|+.++.|+. -|.+.+|+..+..-+...++|...+.+++.+ |+|+.+++|+.||+|++||..++-|+.++..|
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH  391 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH  391 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccC
Confidence            456777999998765 4789999998877777778899999999999 89999999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++.|..++|+..|+.+++++-||+++.||+.
T Consensus       392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             CCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence            9999999999999999999999999999974

>KOG0289|consensus

Probab=99.82  E-value=3e-19  Score=108.33  Aligned_cols=108  Identities=25%  Similarity=0.349  Sum_probs=97.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      ..+|+|+|.+|.+|..|+.+++||+.++..+..|.+|.++|..++|+ .+|.+++++..|+.|++||++..+.+.++...
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence            45799999999999999999999999999999999999999999999 99999999999999999999998888777644


Q ss_pred             c-cceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 S-AEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 ~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      + .++.++.|.+.|.+++.++.+=.|++++
T Consensus       431 ~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  431 EKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            3 4789999999999999997776666654

>KOG1034|consensus

Probab=99.82  E-value=1.9e-19  Score=106.04  Aligned_cols=104  Identities=28%  Similarity=0.545  Sum_probs=96.4

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec---ccccce
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEV   86 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~---~~~~~v   86 (113)
                      ..+++.++.-|.|++.|+.+++....+.+|...|..+++.|.+.++++++++|..|++|++++..++..+.   +|...|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            34788888999999999999999999999999999999999889999999999999999999999888775   577899


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          87 VGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .++.|+++|.++++++.|..+++|++.
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecC
Confidence            999999999999999999999999874

>KOG0264|consensus

Probab=99.82  E-value=2.9e-19  Score=108.20  Aligned_cols=109  Identities=28%  Similarity=0.411  Sum_probs=93.6

Q ss_pred             eEcCCCC-EEEeeecCCeEEEeeCCCCe-------eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC--ccc
Q psy3639           5 RVTSSPQ-RCLTGSYDRTCKLWDIKSGH-------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA--KEE   74 (113)
Q Consensus         5 ~~~~~~~-~~~~~~~d~~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~--~~~   74 (113)
                      +|++..+ .+++++.|+.|++||+....       +...+.+|...|.+++|+|....+|++.+.|+.+.+||.+  +.+
T Consensus       184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            4566554 78899999999999986432       3456789999999999998888999999999999999999  556


Q ss_pred             cceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ......+|.+.+++++|+| ++..|++++.|++|.+||+|
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR  303 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR  303 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence            6677788999999999999 56678899999999999986

>KOG0308|consensus

Probab=99.81  E-value=4e-19  Score=112.07  Aligned_cols=111  Identities=26%  Similarity=0.468  Sum_probs=97.1

Q ss_pred             CcceE-cCCCCEEEeeecCCeEEEeeCCCCe--eeE--------Eee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639           2 GVPRV-TSSPQRCLTGSYDRTCKLWDIKSGH--EIC--------TYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         2 ~~~~~-~~~~~~~~~~~~d~~v~i~~~~~~~--~~~--------~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      .|.++ .++..++++|+-|+.|.+||+.++.  .+.        .+. ++..++.+++.+ +.+..+++|+..+.+++||
T Consensus       121 kcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  121 KCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             eeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceEEec
Confidence            34455 6678899999999999999998772  222        122 678899999999 7789999999999999999


Q ss_pred             CCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +++.+.+..+.+|...|..+..+++|+.+++++.||+|++||+.
T Consensus       200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            99999999999999999999999999999999999999999984

>KOG0293|consensus

Probab=99.81  E-value=5.2e-19  Score=106.99  Aligned_cols=109  Identities=22%  Similarity=0.320  Sum_probs=96.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +.|+++|+++|+++.|.+.-+|.+...   +..+++.+|..+|..+.|+ |+.+++++++.+..+.+||..++.+...+.
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS-PDdryLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS-PDDRYLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC-CCCCeEEecCchHheeeccCCcchhhhhcc
Confidence            578999999999999999999987543   4578889999999999999 788999999999999999999999887776


Q ss_pred             cc-ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GH-SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .. .-.+.+.+|.|||..+++|+.|+++..||+.
T Consensus       309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             cCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            33 4678899999999999999999999999974

>KOG1445|consensus

Probab=99.81  E-value=8.3e-20  Score=115.66  Aligned_cols=107  Identities=21%  Similarity=0.407  Sum_probs=96.7

Q ss_pred             EcC-CCCEEEeeecCCeEEEeeCCCC-------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           6 VTS-SPQRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         6 ~~~-~~~~~~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      |+| +.+.++++++||.|++|.+..+       .+...+..|...|+++.|+|-....+++++.|-+|++||+.+.+...
T Consensus       635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~  714 (1012)
T KOG1445|consen  635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS  714 (1012)
T ss_pred             cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence            444 5679999999999999998654       24567788999999999998888899999999999999999999999


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+.+|...|..++|+|+|+.+++.+.||++++|+-
T Consensus       715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            99999999999999999999999999999999975

>KOG0296|consensus

Probab=99.81  E-value=2.1e-18  Score=102.71  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=102.2

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.|+.++.++++|+-+|.|++|...++.....+......+.=+.|+ |....++.|+.||.+-+|.+.+....+.+.+
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence            467899999999999999999999999998888887666778889999 6899999999999999999999877899999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |..++.+=.|.|+|+.++++..||+|++||..
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k  220 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK  220 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecC
Confidence            99999999999999999999999999999973

>KOG0772|consensus

Probab=99.81  E-value=2.9e-19  Score=110.46  Aligned_cols=111  Identities=21%  Similarity=0.432  Sum_probs=89.0

Q ss_pred             CcceEcCCC-CEEEeeecCCeEEEeeCCCCe-eeEEee-----CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           2 GVPRVTSSP-QRCLTGSYDRTCKLWDIKSGH-EICTYR-----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      .+-+|+|.. +.+++++.||++|+|++...+ .+++++     +..-+++..+|+ +++..+++|..||.|.+|+.....
T Consensus       272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~  350 (641)
T KOG0772|consen  272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT  350 (641)
T ss_pred             eccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc
Confidence            566888865 589999999999999986543 444544     234568899999 889999999999999999975432


Q ss_pred             ---cceeeccccc--ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          75 ---CIQTYRGHSA--EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 ---~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                         ....-.+|..  .+.++.||++|++|++-+.|+++++||+|
T Consensus       351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence               1233345554  89999999999999999999999999986

>KOG0274|consensus

Probab=99.80  E-value=2.3e-18  Score=109.60  Aligned_cols=106  Identities=27%  Similarity=0.560  Sum_probs=95.2

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .++...+..+++|+.|.+|++|++.++..+.++.+|..+|.++..+   +..+++|+.|++|++||+.+++++.++.+|.
T Consensus       295 ~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~  371 (537)
T KOG0274|consen  295 RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT  371 (537)
T ss_pred             EEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence            3555666777888899999999999899999998899999999987   7899999999999999999999999999999


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|.++.+.+. ..+++|+.|++|++||++
T Consensus       372 ~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  372 GRVYSLIVDSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             ceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence            99999988655 889999999999999985

>KOG0267|consensus

Probab=99.80  E-value=6.1e-20  Score=116.82  Aligned_cols=110  Identities=31%  Similarity=0.514  Sum_probs=102.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.+++...+++.|+.+|+|++||+++.+.++++.+|..++..+.|+ |.+.++++|+.|+.+.+||++..-+.+.+.+
T Consensus        74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEeccccccccceehhhhccCceeeecC
Confidence            345677788899999999999999999999999999999999999999 7789999999999999999998888999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      |...+..+.|+|+|++++.+++|..+++||+
T Consensus       153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             CcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            9889999999999999999999999999997

>KOG0316|consensus

Probab=99.79  E-value=3.1e-18  Score=97.44  Aligned_cols=106  Identities=26%  Similarity=0.493  Sum_probs=83.1

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--ccceeeccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGH   82 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--~~~~~~~~~   82 (113)
                      +.+.+...+++++.|+.+.+||+.+|+..+.+.+|.+.|..++|+ .....+++|+.|.++++||+++.  ++++.+...
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea  144 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA  144 (307)
T ss_pred             cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccCCCCccchhhhh
Confidence            345667789999999999999999999999999999999999999 77899999999999999998764  344444322


Q ss_pred             --------------------------------------ccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 --------------------------------------SAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 --------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                                                            ..+|++++|+++++..+.++.|+++++.|
T Consensus       145 ~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  145 KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             cCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence                                                  34556666666666666666666666554

>KOG0296|consensus

Probab=99.79  E-value=9.6e-18  Score=99.93  Aligned_cols=109  Identities=17%  Similarity=0.271  Sum_probs=98.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +++.+|+.+++++|+.|-..++|+..++.....+.+|+..|+++.|+ .++.++++|+.+|.|++|+..++.....+...
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs-hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e  147 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS-HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE  147 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc-cCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence            35678888999999999999999999999999999999999999999 89999999999999999999999877777644


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...+.=+.|+|.+..|+.|+.||.+.+|.+
T Consensus       148 ~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             cCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            455666899999999999999999999976

>KOG0292|consensus

Probab=99.79  E-value=6.9e-19  Score=114.52  Aligned_cols=109  Identities=28%  Similarity=0.369  Sum_probs=104.2

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      -.+|+|....++++-.+|.|.+||.+=+.++..|..|.++|..++|+ +...++++|+.|.+|++|+.++.+++.++.+|
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH-~~qplFVSGGDDykIkVWnYk~rrclftL~GH   92 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH   92 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeec-CCCCeEEecCCccEEEEEecccceehhhhccc
Confidence            35789999999999999999999999999999999999999999999 77899999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      -..|..+.|++.-.++++++.|.+|+||+.
T Consensus        93 lDYVRt~~FHheyPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             cceeEEeeccCCCceEEEccCCCeEEEEec
Confidence            999999999999999999999999999985

>KOG0274|consensus

Probab=99.79  E-value=9.7e-18  Score=106.83  Aligned_cols=104  Identities=26%  Similarity=0.506  Sum_probs=94.8

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA   84 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~   84 (113)
                      ++..-+..+++|+.|.++++||..++++...+.+|...+.++...   +..+++|+.|.+|++|++.++..+..+.+|..
T Consensus       256 ~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~  332 (537)
T KOG0274|consen  256 AFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG  332 (537)
T ss_pred             EEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccc
Confidence            344447899999999999999999999999999999999999876   57788899999999999999999999999999


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|+++..+  +..+++++.|++|++||.+
T Consensus       333 ~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  333 PVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             cEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            99999996  8899999999999999963

>KOG1332|consensus

Probab=99.79  E-value=4.3e-18  Score=97.13  Aligned_cols=107  Identities=21%  Similarity=0.366  Sum_probs=91.8

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEE-cCCCCCEEEEEeCCCcEEEEeCCccc--cceee
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAF-SEPYGDKILTGSFDKTLKLWASAKEE--CIQTY   79 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~v~~wd~~~~~--~~~~~   79 (113)
                      ++..|++|++++.|++|+|+..+..   ..+.++.+|.+|+..++| +|..|.++++++.||.|.+|.-..++  ....+
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~   98 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH   98 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence            4556889999999999999998754   467899999999999999 55679999999999999999987763  45666


Q ss_pred             cccccceEEEEEcc--CCCEEEEeecCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSP--DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..|...|++++|.|  -|-.|++++.||.|.+++.
T Consensus        99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             hhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence            77899999999998  4567899999999999875

>KOG1274|consensus

Probab=99.79  E-value=6.7e-18  Score=109.72  Aligned_cols=112  Identities=20%  Similarity=0.335  Sum_probs=95.7

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-   79 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-   79 (113)
                      +.+++++-+|++++.|++|-.|++-+..+......+++|.++|.++.++ |++.++++.+-||.|++||+.++....++ 
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-CCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            4678899999999999999999999999999999999999999999999 88999999999999999997655331111 


Q ss_pred             ---------------------------------------------------cccccceEEEEEccCCCEEEEeecCCcEE
Q psy3639          80 ---------------------------------------------------RGHSAEVVGVTFSPDQSTFCSCSMDHTAR  108 (113)
Q Consensus        80 ---------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  108 (113)
                                                                         +.+...+..++|+|+|.|+++++.+|.|.
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~  257 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL  257 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence                                                               11234478899999999999999999999


Q ss_pred             EeecC
Q psy3639         109 IFNTM  113 (113)
Q Consensus       109 ~~~~~  113 (113)
                      |||++
T Consensus       258 vWnv~  262 (933)
T KOG1274|consen  258 VWNVD  262 (933)
T ss_pred             EEecc
Confidence            99874

>KOG0643|consensus

Probab=99.79  E-value=1.9e-17  Score=95.58  Aligned_cols=77  Identities=23%  Similarity=0.395  Sum_probs=69.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      .-+.++.+|.+|.+++.|....+|-...|+.+.++.+|++.|.+++.. .....+++|+.|.++++||+++++.+.++
T Consensus        14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la~~   90 (327)
T KOG0643|consen   14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLATW   90 (327)
T ss_pred             ceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEEEe
Confidence            345788999999999999999999988899999999999999999998 78899999999999999999888765554

>KOG0281|consensus

Probab=99.79  E-value=6.7e-19  Score=104.91  Aligned_cols=106  Identities=25%  Similarity=0.446  Sum_probs=96.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +-|+--++..+++|..|.+|++||..+-.++..+.+|++.|.|+.+.   .+.+++|+.|.+|++||.++++++.++-.|
T Consensus       200 VYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihH  276 (499)
T KOG0281|consen  200 VYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHH  276 (499)
T ss_pred             eEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhh
Confidence            34556677889999999999999999999999999999999999987   569999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...|..+.|+  ..++++++.|.++.+||+.
T Consensus       277 ceaVLhlrf~--ng~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  277 CEAVLHLRFS--NGYMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             cceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence            9999999996  5689999999999999973

>KOG0313|consensus

Probab=99.78  E-value=2.9e-18  Score=102.58  Aligned_cols=105  Identities=25%  Similarity=0.472  Sum_probs=90.5

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc---cceeeccc
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---CIQTYRGH   82 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~---~~~~~~~~   82 (113)
                      |++ ...+++++.|.+|+.||+.++....++. ......++..+ +...++++|+.|..+++||++++.   ..+++.+|
T Consensus       268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH  344 (423)
T KOG0313|consen  268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH  344 (423)
T ss_pred             EcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecc-cccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence            444 5678899999999999999999888877 55678999999 678999999999999999998752   45678899


Q ss_pred             ccceEEEEEccCC-CEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQ-STFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~  113 (113)
                      ...|.++.|+|.. ..|++++.|+++++||+|
T Consensus       345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             hhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence            9999999999954 567899999999999986

>KOG0305|consensus

Probab=99.78  E-value=2.2e-18  Score=107.46  Aligned_cols=108  Identities=24%  Similarity=0.402  Sum_probs=99.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC-CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee-e
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-Y   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~-~   79 (113)
                      +.+.++++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|+   ...+.+|+.++.|..+|++..+.... +
T Consensus       221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~  297 (484)
T KOG0305|consen  221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTL  297 (484)
T ss_pred             EEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhh
Confidence            3467899999999999999999999999999999988 99999999998   68889999999999999998765554 8


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+|.+.|+.++|+++++++++|+.|+.+.|||.
T Consensus       298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             hcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            889999999999999999999999999999996

>KOG0293|consensus

Probab=99.78  E-value=1.1e-18  Score=105.63  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=94.2

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe--EEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV--VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .+++.+++++++.-.+..+.+||++..+.+..+.+|+..  +-.-+|--.+..++++|++|+.|++|+..+++.+..+.+
T Consensus       401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  401 FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            356788999999999999999999988888888888654  444445434457899999999999999999999999999


Q ss_pred             cccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      |...|++++|+| +...+++++.||+|+||..
T Consensus       481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            999999999999 6778899999999999964

>KOG0640|consensus

Probab=99.78  E-value=3.5e-18  Score=100.58  Aligned_cols=110  Identities=21%  Similarity=0.401  Sum_probs=93.6

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      ++...|+|...+|++++.|++|++||+......+.++  ....++.++.|+ |.|.+++.|..-..+++||+.+.++...
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEeee
Confidence            4567899999999999999999999986543322222  256789999999 7899999999999999999999887655


Q ss_pred             ec---ccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          79 YR---GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        79 ~~---~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ..   .|.+.|.++.+++.|+..++++.||.|++||
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence            43   4678999999999999999999999999998

>KOG0640|consensus

Probab=99.78  E-value=7.7e-18  Score=99.16  Aligned_cols=110  Identities=23%  Similarity=0.387  Sum_probs=97.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEE---eeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICT---YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      .+..|+|.|++++.|.+-..+++||+.+.++...   -.+|++.|+++..+ +.+.+.++++.||.|++||-.+.+++.+
T Consensus       220 rsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t  298 (430)
T KOG0640|consen  220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRT  298 (430)
T ss_pred             eeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHH
Confidence            4567899999999999999999999998775433   24689999999999 8899999999999999999999999988


Q ss_pred             ec-cc-ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          79 YR-GH-SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        79 ~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +. .| ...|.+..|..+|+++++.+.|..+++|.+
T Consensus       299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence            86 34 457899999999999999999999999986

>KOG0308|consensus

Probab=99.78  E-value=8.3e-18  Score=106.27  Aligned_cols=109  Identities=23%  Similarity=0.405  Sum_probs=101.4

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+.++++..++.|+-.+-+++||.++++.+-.+++|+..|..+..+ ++|..+++++.||+|++||+...+++.++..|+
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            3556777799999999999999999999998999999999999999 899999999999999999999999999999999


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|++++.+|+-.++.+|+.||.|..-|++
T Consensus       256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             CceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            999999999999999999999999887764

>KOG0269|consensus

Probab=99.78  E-value=9.1e-19  Score=112.12  Aligned_cols=105  Identities=20%  Similarity=0.361  Sum_probs=96.4

Q ss_pred             CCCEEEeeecCCeEEEeeCCC---CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKS---GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE   85 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~   85 (113)
                      ..+++++++.+|.|.+||+..   .+.+..+..|...+.++.|++....++++|+.||.|++||++..+...++.+....
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            356899999999999999976   45677888999999999999888899999999999999999999999999988889


Q ss_pred             eEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          86 VVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        86 v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |..++|+| .+..|+++.+.|.+.+||+|
T Consensus       179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             hhceeeccCCCceEEEecCCceEEEeecc
Confidence            99999999 78899999999999999986

>KOG1407|consensus

Probab=99.77  E-value=9e-18  Score=96.56  Aligned_cols=110  Identities=21%  Similarity=0.408  Sum_probs=96.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeE--EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC--TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      -++|+.+|..+++|+.|+++.+|++...+...  ...+|...|-.++|.|+.+..+++++.|..|++||++++++.....
T Consensus        25 Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~  104 (313)
T KOG1407|consen   25 SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE  104 (313)
T ss_pred             EEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence            36788999999999999999999998765433  4567999999999999999999999999999999999999988887


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...+.+ .+.|+|+|.++++++.|..|.+.|.+
T Consensus       105 ~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r  136 (313)
T KOG1407|consen  105 TKGENI-NITWSPDGEYIAVGNKDDRITFIDAR  136 (313)
T ss_pred             ccCcce-EEEEcCCCCEEEEecCcccEEEEEec
Confidence            555554 58999999999999999999998864

>KOG0643|consensus

Probab=99.77  E-value=6.5e-18  Score=97.46  Aligned_cols=109  Identities=24%  Similarity=0.355  Sum_probs=93.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee--
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY--   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~--   79 (113)
                      ..-|.|.++.+++|.+||.|..||+++++ .+...+.|...|+++.++ ++..++++++.|.+.++||..+.+.+.++  
T Consensus       152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  152 SALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             eeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeee
Confidence            34588999999999999999999999985 455557799999999999 88999999999999999997654433322  


Q ss_pred             -----------------------------------------------------cccccceEEEEEccCCCEEEEeecCCc
Q psy3639          80 -----------------------------------------------------RGHSAEVVGVTFSPDQSTFCSCSMDHT  106 (113)
Q Consensus        80 -----------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~  106 (113)
                                                                           ++|-+++++++|+|+|...++|++||.
T Consensus       231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence                                                                 568899999999999999999999999


Q ss_pred             EEEeec
Q psy3639         107 ARIFNT  112 (113)
Q Consensus       107 i~~~~~  112 (113)
                      |++...
T Consensus       311 VR~h~F  316 (327)
T KOG0643|consen  311 VRLHHF  316 (327)
T ss_pred             EEEEEe
Confidence            998753

>KOG1446|consensus

Probab=99.77  E-value=4.4e-17  Score=95.40  Aligned_cols=111  Identities=23%  Similarity=0.373  Sum_probs=98.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC--CCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~v~~wd~~~~~~~~~~   79 (113)
                      ....++++|..++++++|-.+++||..+++.+.++..+...+..++|..+ ...+..++.  |.+|+.-++.+.+.++.+
T Consensus        18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~-~~~~i~sStk~d~tIryLsl~dNkylRYF   96 (311)
T KOG1446|consen   18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH-SNTVIHSSTKEDDTIRYLSLHDNKYLRYF   96 (311)
T ss_pred             eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC-CceEEEccCCCCCceEEEEeecCceEEEc
Confidence            34678999999999999999999999999999999888888888888734 444444444  789999999999999999


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|...|.+++.+|-++.+++++.|++|++||+|
T Consensus        97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR  130 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR  130 (311)
T ss_pred             CCCCceEEEEEecCCCCeEEecccCCeEEeeEec
Confidence            9999999999999988999999999999999986

>KOG0646|consensus

Probab=99.77  E-value=3.3e-17  Score=100.04  Aligned_cols=112  Identities=18%  Similarity=0.310  Sum_probs=92.3

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCC---------CCeeeEEeeCCCCeEEEEEEcCC-CCCEEEEEeCCCcEEEEeC
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIK---------SGHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~v~~wd~   70 (113)
                      +.|..|+-++.++++|+.||.|.+|.+.         +-++++.+..|+-+|+++.+.+. ....+++++.|.++++||+
T Consensus       126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            4577899999999999999999999863         23577888999999999999743 3468999999999999996


Q ss_pred             Cccccce---------------------------------------------------------eeccccc--ceEEEEE
Q psy3639          71 AKEECIQ---------------------------------------------------------TYRGHSA--EVVGVTF   91 (113)
Q Consensus        71 ~~~~~~~---------------------------------------------------------~~~~~~~--~v~~~~~   91 (113)
                      ..+..+.                                                         .+.+|..  .|.++++
T Consensus       206 S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai  285 (476)
T KOG0646|consen  206 SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI  285 (476)
T ss_pred             ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence            5543322                                                         1234554  8999999


Q ss_pred             ccCCCEEEEeecCCcEEEeec
Q psy3639          92 SPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.||..|++|+.||.+.+||+
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEec
Confidence            999999999999999999996

>KOG0306|consensus

Probab=99.77  E-value=1.4e-17  Score=106.78  Aligned_cols=109  Identities=24%  Similarity=0.423  Sum_probs=103.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      |+.++|++++++++--|.++++|-+++-+..-.+.+|.-||.++.++ ++...+++|+.|..|++|-++-|.|-.++-+|
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fAH  591 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH  591 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence            56789999999999999999999999999888999999999999999 88999999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|.++.|-|....+++++.|+.++.||-
T Consensus       592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             cCceeEEEEcccceeEEEecCcceEEeech
Confidence            999999999999999999999999999974

>KOG1273|consensus

Probab=99.77  E-value=1.1e-17  Score=98.56  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=88.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.|++.|.++++|..||.|.+||+.|...-..+..|..+|++++|+ ++|+.+++++.|..+.+||+..+.+++.+. 
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            468899999999999999999999999998888899999999999999 899999999999999999999999888877 


Q ss_pred             cccceEEEEEccCCC-EEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQS-TFCSCSMD  104 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~-~~~~~~~~  104 (113)
                      ..++|+..+|+|..+ .+++.-.+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~  128 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIME  128 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEec
Confidence            678999999999443 33333333

>KOG0641|consensus

Probab=99.77  E-value=2.9e-17  Score=93.35  Aligned_cols=107  Identities=27%  Similarity=0.443  Sum_probs=96.6

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC--C-----CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG--H-----QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      +++++-++++|++|.+|++||++-..++.++..  |     ...|..++.. |.++++++|-.|....+||++.++.++.
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd-psgrll~sg~~dssc~lydirg~r~iq~  268 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLASGHADSSCMLYDIRGGRMIQR  268 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC-CCcceeeeccCCCceEEEEeeCCceeee
Confidence            577889999999999999999998888877642  2     2568889998 7899999999999999999999999999


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +..|...|.++.|+|...++++++.|..|++-|+.
T Consensus       269 f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             eCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999999999999999999999999998873

>KOG1446|consensus

Probab=99.77  E-value=5.4e-17  Score=95.02  Aligned_cols=108  Identities=19%  Similarity=0.388  Sum_probs=92.8

Q ss_pred             cceEcCCCCEEEeeec--CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           3 VPRVTSSPQRCLTGSY--DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..+|....+.++.++.  |.+|+.-++.+.+.++.+.||...|..++.+ |.+..+++++.|++|++||++..++...+.
T Consensus        61 ~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen   61 LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             EEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence            4566666776666655  8899999999999999999999999999999 556999999999999999999888777776


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ....++  .+|+|+|-+++++...+.|++||+|
T Consensus       140 ~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen  140 LSGRPI--AAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             cCCCcc--eeECCCCcEEEEecCCCeEEEEEec
Confidence            544444  6899999999999998899999986

>KOG0300|consensus

Probab=99.77  E-value=4.2e-18  Score=100.68  Aligned_cols=109  Identities=27%  Similarity=0.500  Sum_probs=97.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeecc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~~   81 (113)
                      ++.|-..++.+++++.|.+..+||+++++.+..+.+|....+..+-+ |..+++++.+.|-+.++||++.. ..+..+++
T Consensus       277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccchhhcceeeeecc
Confidence            34566678899999999999999999999999999999999998888 77889999999999999999854 56788999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |...|.+..|..+. .+++++.|.++++||++
T Consensus       356 HtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             cccceeEEEEecCC-ceeecCCCceEEEeeec
Confidence            99999999998754 58899999999999985

>KOG0306|consensus

Probab=99.76  E-value=5.9e-18  Score=108.44  Aligned_cols=109  Identities=28%  Similarity=0.444  Sum_probs=102.3

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +..++|+++++++|+.|+.|++|=+.=|.+-..+..|...|.++.|. |....+.+++.|+.++.||-..-+.++.+.+|
T Consensus       555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~-P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL-PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc-ccceeEEEecCcceEEeechhhhhhheeeccc
Confidence            45679999999999999999999998888888888999999999999 67889999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|++++.+|+|.++++++.|..|++|..
T Consensus       634 ~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  634 HSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            999999999999999999999999999963

>KOG0299|consensus

Probab=99.75  E-value=1.1e-17  Score=102.02  Aligned_cols=109  Identities=23%  Similarity=0.444  Sum_probs=95.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +++++++++++++|+.|..|.||+..+.++++.+.+|...|.+++|. .....+++++.|+.+++|++.....+.++.+|
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            46889999999999999999999999999999999999999999998 77888999999999999999888888888888


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|..+.-....+.+-+++.|+++++|++
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi  315 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKI  315 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEec
Confidence            888877776666666666667888888865

>KOG0639|consensus

Probab=99.75  E-value=6.7e-18  Score=104.58  Aligned_cols=111  Identities=16%  Similarity=0.348  Sum_probs=96.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      .-+.+.|+++.|++|++-.++.|||+....+  ...+......+..++.+ ++.+..+++..||.|.+||+.+...++.+
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~Vrqf  547 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQF  547 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecc
Confidence            3467899999999999999999999875432  23334344567888999 78889999999999999999999999999


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++|...+.++..+++|..|++|+-|++++-||+|
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlr  581 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR  581 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence            9999999999999999999999999999999985

>KOG0302|consensus

Probab=99.74  E-value=1.1e-17  Score=100.14  Aligned_cols=109  Identities=18%  Similarity=0.356  Sum_probs=90.0

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCe---eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc---cc
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---CI   76 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~---~~   76 (113)
                      .+|+|--. .+++|.--+.|++|...++.   -...+.+|+..|-.+.|+|.....|++++-||+|++||++.+.   ++
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            35666333 47788888889999988764   1234567999999999998888899999999999999999873   33


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .. +.|.+.|+-++|+..-.+|++|+.||+++|||+|
T Consensus       297 ~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR  332 (440)
T KOG0302|consen  297 ST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR  332 (440)
T ss_pred             Ee-eccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence            33 7788999999999877799999999999999986

>KOG0646|consensus

Probab=99.74  E-value=3.2e-17  Score=100.08  Aligned_cols=109  Identities=18%  Similarity=0.364  Sum_probs=96.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC---------cc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA---------KE   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~---------~~   73 (113)
                      +.+-+|+|.+++.|+..+.+++|.+.+|..+..+..|=..|+++.|+ .++..+++++.||.|.+|++.         +-
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            45567889999999899999999999999999999999999999999 999999999999999999752         23


Q ss_pred             ccceeecccccceEEEEEccC--CCEEEEeecCCcEEEeec
Q psy3639          74 ECIQTYRGHSAEVVGVTFSPD--QSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~i~~~~~  112 (113)
                      +++..+..|.-+|.++...+.  ..++++++.|+++++||+
T Consensus       165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             cceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            567888899999999887653  457999999999999997

>KOG1036|consensus

Probab=99.74  E-value=9.8e-17  Score=93.84  Aligned_cols=107  Identities=18%  Similarity=0.314  Sum_probs=93.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      -+.|+|..+.|++++.||.+++|+....+....++ |..++.+.+|. + ...+++|+.||.|+.+|+.+++. ..+..|
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~-d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth   93 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFA-D-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTH   93 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeecc-C-CceEEEeccCceEEEEEecCCcc-eeeccC
Confidence            35678888899999999999999999887666666 99999999997 3 57789999999999999988874 455558


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..++.++.+++....+++|+.|++|++||.|
T Consensus        94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             CCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            8999999999988889999999999999975

>KOG0294|consensus

Probab=99.74  E-value=1.4e-16  Score=93.66  Aligned_cols=111  Identities=17%  Similarity=0.321  Sum_probs=89.6

Q ss_pred             CcceEcCCCC--EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-----
Q psy3639           2 GVPRVTSSPQ--RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----   74 (113)
Q Consensus         2 ~~~~~~~~~~--~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-----   74 (113)
                      +++.|.+.-.  .|++|++||.|.+|+...-..+..++.|...|+.++++ |.+.+..+.+.|+.+++||+..++     
T Consensus        87 taL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   87 TALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             EEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceee
Confidence            3445555543  89999999999999999999999999999999999999 678888888899999999853332     


Q ss_pred             ---------------------------------------------------------------------------cceee
Q psy3639          75 ---------------------------------------------------------------------------CIQTY   79 (113)
Q Consensus        75 ---------------------------------------------------------------------------~~~~~   79 (113)
                                                                                                 ++..+
T Consensus       166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF  245 (362)
T ss_pred             ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceee
Confidence                                                                                       12223


Q ss_pred             cccccceEEEEE--ccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTF--SPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~--~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+|+.+|..+.+  .|++.++++++.||.|++||++
T Consensus       246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             ecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            457778887774  5678899999999999999974

>KOG4283|consensus

Probab=99.73  E-value=4.6e-17  Score=95.32  Aligned_cols=103  Identities=30%  Similarity=0.485  Sum_probs=90.4

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccc------------
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECI------------   76 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~------------   76 (113)
                      ..++++|..+-.|++=|+.+|...+++.+|...|.++.|+|...-.+++|+.||.|++||++.. -++            
T Consensus       158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP  237 (397)
T ss_pred             ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence            4578899999999999999999999999999999999999887788999999999999998653 122            


Q ss_pred             --eeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          77 --QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        77 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                        .....|.+.++.++|+.++.++++++.|..+++|+.
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence              223456788999999999999999999999999986

>KOG0267|consensus

Probab=99.73  E-value=9.4e-18  Score=107.09  Aligned_cols=109  Identities=26%  Similarity=0.438  Sum_probs=103.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      +.|+|-+.+++.|+.|.-+++||.+...+.+.+.+|...+..++|+ |+|.+++.+++|..+++||...++....|+.|+
T Consensus       118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls-P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e  196 (825)
T KOG0267|consen  118 VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS-PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE  196 (825)
T ss_pred             eeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec-CCCceeeccCCcceeeeeccccccccccccccc
Confidence            4588999999999999999999999888999999999999999999 889999999999999999999999999999999


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.+..+.|+|..-.+++|+.|+++++||++
T Consensus       197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ccccccccCchhhhhccCCCCceeeeeccc
Confidence            999999999988889999999999999985

>KOG0270|consensus

Probab=99.73  E-value=1.6e-16  Score=96.64  Aligned_cols=102  Identities=25%  Similarity=0.407  Sum_probs=87.7

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-cceeecccccceEEE
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAEVVGV   89 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~~~~~~~~~v~~~   89 (113)
                      +.|++|+.|.+|.+||+.++++...+..|..+|.++.|+|..+..+++|+.|+++.+.|++... .-...+ ..+.|-.+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv  335 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKV  335 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEE
Confidence            5799999999999999999999999999999999999998889999999999999999998532 222233 45778899


Q ss_pred             EEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|.| ....++++..||.++-+|+|
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecC
Confidence            9998 44567888899999999986

>KOG1407|consensus

Probab=99.72  E-value=2e-16  Score=91.09  Aligned_cols=108  Identities=20%  Similarity=0.229  Sum_probs=95.4

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      ++|+-+++++..-...|.|.|-....-+++..++.|.....|++|+ |+|+++++|+.|-.+.+||+...-+++.+..+.
T Consensus       153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLD  231 (313)
T ss_pred             eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeecccc
Confidence            3455555655555556899999999999999999999999999999 889999999999999999999999999999888


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      =+|..++|+.+|++|+++++|..|-|-++
T Consensus       232 wpVRTlSFS~dg~~lASaSEDh~IDIA~v  260 (313)
T KOG1407|consen  232 WPVRTLSFSHDGRMLASASEDHFIDIAEV  260 (313)
T ss_pred             CceEEEEeccCcceeeccCccceEEeEec
Confidence            89999999999999999999998877554

>KOG1539|consensus

Probab=99.72  E-value=3.4e-16  Score=101.33  Aligned_cols=110  Identities=24%  Similarity=0.366  Sum_probs=96.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe---eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc---
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~---   75 (113)
                      .++++++.|++.+.|...|.|-+||+.+|-....+   ..|..+|+.++.. ..++.+++++.+|.+.+||......   
T Consensus       452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeee
Confidence            35788999999999999999999999999887777   4699999999998 7788999999999999999654431   


Q ss_pred             --------------------------------------ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 --------------------------------------IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 --------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                                            ++.+.+|...+++++|||||+++++++.|++|++||+
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence                                                  2334578999999999999999999999999999997

>KOG0278|consensus

Probab=99.72  E-value=1.7e-17  Score=95.22  Aligned_cols=108  Identities=17%  Similarity=0.304  Sum_probs=94.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..++|+.+.+.+++|+.++.+|+||+...+ +...+.+|...|..+.|+ ...+.+++...|++||+||.++++.++++.
T Consensus       104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            457899999999999999999999987554 677889999999999999 777888888999999999999999888887


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                       .+.+|.++.++++|+++. ....+.|.+||.
T Consensus       183 -~~s~VtSlEvs~dG~ilT-ia~gssV~Fwda  212 (334)
T KOG0278|consen  183 -FNSPVTSLEVSQDGRILT-IAYGSSVKFWDA  212 (334)
T ss_pred             -cCCCCcceeeccCCCEEE-EecCceeEEecc
Confidence             567889999999999664 446788999985

>KOG2110|consensus

Probab=99.72  E-value=1.1e-15  Score=91.39  Aligned_cols=110  Identities=20%  Similarity=0.308  Sum_probs=94.4

Q ss_pred             cceEcCCCC--EEEe--eecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCc-EEEEeCCccccce
Q psy3639           3 VPRVTSSPQ--RCLT--GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEECIQ   77 (113)
Q Consensus         3 ~~~~~~~~~--~~~~--~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-v~~wd~~~~~~~~   77 (113)
                      .++++++..  +++.  ....|.|.+||..+-++...+..|.+++-+++|+ ++|.+++++++.|+ ||++.+.+++.+.
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEee
Confidence            456666553  6664  3346889999999999999999999999999999 88999999999996 8999999999999


Q ss_pred             eecccc--cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          78 TYRGHS--AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +++...  ..+++++|+|++.+|.+.+..++|++|.++
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            887543  467899999999999999999999999763

>KOG0639|consensus

Probab=99.72  E-value=3e-17  Score=101.76  Aligned_cols=107  Identities=17%  Similarity=0.407  Sum_probs=97.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+++|+.+...++..||.|.|||+.....++.+++|+..+.||.++ ++|..+.+|+.|++|+.||++++..+.... ..
T Consensus       515 La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis-~dGtklWTGGlDntvRcWDlregrqlqqhd-F~  592 (705)
T KOG0639|consen  515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FS  592 (705)
T ss_pred             hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec-CCCceeecCCCccceeehhhhhhhhhhhhh-hh
Confidence            4678999999999999999999999999999999999999999999 899999999999999999999998777665 56


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.|.++.++|.+.++++|-+++.+.+...
T Consensus       593 SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  593 SQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             hhheecccCCCccceeeecccCcEEEEec
Confidence            78999999999999999999888877543

>KOG0973|consensus

Probab=99.71  E-value=1.6e-16  Score=104.53  Aligned_cols=109  Identities=30%  Similarity=0.552  Sum_probs=94.4

Q ss_pred             ceEcCCCCEEEeee--cCCeEEEeeCCC------------CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639           4 PRVTSSPQRCLTGS--YDRTCKLWDIKS------------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         4 ~~~~~~~~~~~~~~--~d~~v~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      +.++|++..+++|+  .|+.+++|+...            .+.+.+...|.+.|.|+.|+ ++|+++++|+.|+.|.+|+
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~dG~~lAsGSDD~~v~iW~   97 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PDGSYLASGSDDRLVMIWE   97 (942)
T ss_pred             EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CCCCeEeeccCcceEEEee
Confidence            56799999999999  899999998742            23456777899999999999 8999999999999999998


Q ss_pred             CCc------------------cccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          70 SAK------------------EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        70 ~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...                  .+.+..+.+|...|..+.|+|++.++++++.|++|.+||.+
T Consensus        98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            652                  13566778899999999999999999999999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.71  E-value=2.1e-15  Score=85.70  Aligned_cols=104  Identities=21%  Similarity=0.433  Sum_probs=81.3

Q ss_pred             cceEcCCCCEEEe--eecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCccccce
Q psy3639           3 VPRVTSSPQRCLT--GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEECIQ   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~--~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~v~~wd~~~~~~~~   77 (113)
                      .++|+|+++.+++  |..+..+.+||.+ ++.+..+.  ...+..+.|+ |.|++++.++.   .|.+.+||.++.+.+.
T Consensus        64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~  139 (194)
T PF08662_consen   64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKIS  139 (194)
T ss_pred             EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence            4678999987654  4456789999996 66666664  4566789999 77888888765   4679999999888777


Q ss_pred             eecccccceEEEEEccCCCEEEEeec------CCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM------DHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~  112 (113)
                      ....  ..+..++|+|+|++++++..      |+.++||+.
T Consensus       140 ~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  140 TFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             cccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            7653  34678999999999998764      788999975

>KOG1539|consensus

Probab=99.71  E-value=7e-17  Score=104.40  Aligned_cols=103  Identities=17%  Similarity=0.341  Sum_probs=92.3

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      +....+++.+.+|-.|+++|..+.+.++.+.+|.+.++++.|+ ++|+++++++.|++|++||+.++.++-.+. -..++
T Consensus       543 hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~  620 (910)
T KOG1539|consen  543 HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPC  620 (910)
T ss_pred             eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcc
Confidence            3344577888889999999999999999999999999999999 899999999999999999999999887776 45677


Q ss_pred             EEEEEccCCCEEEEeecC-CcEEEee
Q psy3639          87 VGVTFSPDQSTFCSCSMD-HTARIFN  111 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-~~i~~~~  111 (113)
                      .++.|+|+|.+|++.+.| ..|++|.
T Consensus       621 ~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  621 TSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeeEECCCCCEEEEEEecCceEEEEE
Confidence            889999999999999998 7799984

>KOG2394|consensus

Probab=99.71  E-value=8.5e-17  Score=100.11  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=83.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      +-.+|+|+|+++|+.++||.+||||..+.+.+..++..-+...|++|+ |+++++++|++|..|.+|.+...+.+..-++
T Consensus       294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS-PDGKyIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS-PDGKYIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc-CCccEEEecCCcceEEEEEeccceEEEeccc
Confidence            346889999999999999999999999988888888888889999999 8999999999999999999999998999899


Q ss_pred             cccceEEEEEc
Q psy3639          82 HSAEVVGVTFS   92 (113)
Q Consensus        82 ~~~~v~~~~~~   92 (113)
                      |++.|..++|.
T Consensus       373 HkSWVs~VaFD  383 (636)
T KOG2394|consen  373 HKSWVSVVAFD  383 (636)
T ss_pred             cccceeeEeec
Confidence            99999999998

>KOG4283|consensus

Probab=99.70  E-value=7.2e-16  Score=90.42  Aligned_cols=104  Identities=25%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCC--CEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG--DKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      +.-++.+++.|.++++||..+-+....|+ -.+.|..-+++|-..  -++++|..+-.|++.|+.++..-+++.+|.+.|
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            44478899999999999999888777776 567788888885333  356777788899999999999999999999999


Q ss_pred             EEEEEccCCCE-EEEeecCCcEEEeecC
Q psy3639          87 VGVTFSPDQST-FCSCSMDHTARIFNTM  113 (113)
Q Consensus        87 ~~~~~~~~~~~-~~~~~~~~~i~~~~~~  113 (113)
                      .++.|+|...+ |++++.||.+++||+|
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiR  219 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIR  219 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEee
Confidence            99999997776 5789999999999986

>KOG2096|consensus

Probab=99.70  E-value=6.5e-16  Score=91.39  Aligned_cols=105  Identities=26%  Similarity=0.451  Sum_probs=92.4

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC--------cccccee
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA--------KEECIQT   78 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~--------~~~~~~~   78 (113)
                      .-++.++++++.|..|.+|+++ |+.++.+......-...+.+ |+|+++++++..-.|++|.+-        .-..+.+
T Consensus       196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~  273 (420)
T KOG2096|consen  196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS  273 (420)
T ss_pred             cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence            4466789999999999999998 99999998777777888899 899999999999999999862        2245678


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +++|...|...+|+++.+.+++.+.||++++||+.
T Consensus       274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            89999999999999999999999999999999973

>KOG1310|consensus

Probab=99.70  E-value=2.7e-16  Score=98.49  Aligned_cols=113  Identities=23%  Similarity=0.334  Sum_probs=97.3

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCcc-----
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKE-----   73 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~wd~~~~-----   73 (113)
                      +++..|+.+|.+|++|++|-.+.|||.-..+.++.+. +|...|.+++|-|..+ +++++|..|..|+++|+...     
T Consensus        53 VN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~  132 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM  132 (758)
T ss_pred             ecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence            4678899999999999999999999998888888774 7999999999987544 57789999999999998752     


Q ss_pred             -----ccceeecccccceEEEEEccCC-CEEEEeecCCcEEEeecC
Q psy3639          74 -----ECIQTYRGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 -----~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~  113 (113)
                           .....+..|...|..++-.|++ +.++++++||+++.+|+|
T Consensus       133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence                 3345566788899999999977 889999999999999986

>KOG2445|consensus

Probab=99.69  E-value=3.5e-15  Score=87.75  Aligned_cols=111  Identities=24%  Similarity=0.401  Sum_probs=89.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC----eeeEEeeCCCCeEEEEEEc-CCCCCEEEEEeCCCcEEEEeCCc----
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFS-EPYGDKILTGSFDKTLKLWASAK----   72 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~v~~wd~~~----   72 (113)
                      .++.|++.|+++++++.|.+++|||....    .+....+.|.+.|..+.|. |..|+.+++++.|+++.+|.-..    
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~   96 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE   96 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc
Confidence            46778999999999999999999996433    3455667899999999995 45588999999999999997521    


Q ss_pred             -----cccceeecccccceEEEEEcc--CCCEEEEeecCCcEEEeec
Q psy3639          73 -----EECIQTYRGHSAEVVGVTFSP--DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        73 -----~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~  112 (113)
                           .....++......|..+.|.|  -|-.+++++.||.++||+.
T Consensus        97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence                 123345555667899999999  5678899999999999975

>KOG0322|consensus

Probab=99.69  E-value=2.7e-16  Score=90.74  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=62.1

Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          45 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+.+. ++++.+++++.|+.+++|..++.+++..++.|...|++++|+|+...++.++.|+.|.+|++
T Consensus       256 gvrIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  256 GVRIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEc-cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            34444 88899999999999999999999999999999999999999999999999999999999986

>KOG0270|consensus

Probab=99.69  E-value=9.3e-17  Score=97.68  Aligned_cols=105  Identities=23%  Similarity=0.406  Sum_probs=88.7

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCe---eeE------------------EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGH---EIC------------------TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL   67 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~---~~~------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~   67 (113)
                      .|+++|.|+.+..|.|||+.--.   +..                  .-.+|+..|.+++|+....+.|++|+.|.+|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999999999999985321   111                  112577788899998566678999999999999


Q ss_pred             EeCCccccceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          68 WASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ||+.++++..++..|+..|.+++|+| .+.++++|+.|+++.+.|.|
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            99999999999998999999999999 67789999999999999976

>KOG1273|consensus

Probab=99.69  E-value=2.3e-15  Score=88.90  Aligned_cols=112  Identities=21%  Similarity=0.342  Sum_probs=94.3

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC------------------------------
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE------------------------------   50 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------   50 (113)
                      +++.||+++|+.|++++.|..+.+||+..|.+++.+. ...+|....|+|                              
T Consensus        68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~  146 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK  146 (405)
T ss_pred             eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence            3567999999999999999999999999888777665 334444433333                              


Q ss_pred             ----------------CCCCEEEEEeCCCcEEEEeCCccccceeecccc-cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          51 ----------------PYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        51 ----------------~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                                      +.|+++++|...|.+.++|..+.+++..++... +.|..+.++..|+.++..+.|+.|+.|+++
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence                            567899999999999999999999998888665 788999999999999999999999999863

>KOG0642|consensus

Probab=99.68  E-value=6.9e-16  Score=96.25  Aligned_cols=109  Identities=28%  Similarity=0.446  Sum_probs=93.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCC--------CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKS--------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-   73 (113)
                      ...+++....++++++|+.+.+|++..        -+++.++++|.++|.|+++. .++..+++|+.||.|+.|++... 
T Consensus       299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~  377 (577)
T KOG0642|consen  299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQ  377 (577)
T ss_pred             hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeeeeccCCCC
Confidence            345677788999999999999999922        24788999999999999998 88999999999999999965421 


Q ss_pred             ---------ccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          74 ---------ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                               .....+.+|...++.+++|+....|++++.||+++.|+.
T Consensus       378 dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  378 DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             CcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence                     233566789999999999999899999999999999974

>KOG0641|consensus

Probab=99.67  E-value=5.8e-15  Score=84.12  Aligned_cols=111  Identities=27%  Similarity=0.397  Sum_probs=97.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc----ccce
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQ   77 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~----~~~~   77 (113)
                      ..+++.|.|+++++|..|....+||++.+++++.+..|...|.++.|+ |...++.+++.|..|++-|++..    ..+.
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlqgdla~el~~~  313 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQGDLAHELPIM  313 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecccchhhcCceE
Confidence            356889999999999999999999999999999999999999999999 77889999999999999998653    2234


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ....|+..+..+.|+|..--+++.+.|.+..+|.+.
T Consensus       314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            445678888889999988889999999999999763

>KOG0644|consensus

Probab=99.67  E-value=3.7e-17  Score=106.09  Aligned_cols=107  Identities=28%  Similarity=0.483  Sum_probs=99.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .|+.++..+.++++|++|..++||.++++.++....+|.+.+++++.+ .++..+++++.|..|++|.++.+.++..+.+
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs-~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg  272 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS-SNNTMIAAASNDKVIRVWRLPDGAPVSVLRG  272 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccc-hhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence            467788999999999999999999999999999999999999999998 7788889999999999999999999999999


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |++.|.+++|+|-.    +.+.||++++||.+
T Consensus       273 htgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  273 HTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cccceeeeccCccc----cCCCCCceEecccc
Confidence            99999999999954    66889999999964

>KOG0268|consensus

Probab=99.67  E-value=2.1e-16  Score=94.48  Aligned_cols=110  Identities=20%  Similarity=0.343  Sum_probs=94.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +-++|+|..--+.++++|..++.||++.- .++....+|.+.|.+++|+ |.|.-+++|+.|.+|++|..+.+..--.+.
T Consensus       233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYh  311 (433)
T KOG0268|consen  233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYH  311 (433)
T ss_pred             cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhh
Confidence            34689997778999999999999998754 4778889999999999999 889999999999999999998876544443


Q ss_pred             c-cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 G-HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      . ..+.|.++.||.|.+++++|+.|+.|++|..
T Consensus       312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             HhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            2 2467999999999999999999999999964

>KOG2111|consensus

Probab=99.67  E-value=5.5e-15  Score=87.09  Aligned_cols=98  Identities=21%  Similarity=0.295  Sum_probs=85.2

Q ss_pred             eeecCCeEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCc-EEEEeCCccccceeeccc--ccceEEE
Q psy3639          15 TGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEECIQTYRGH--SAEVVGV   89 (113)
Q Consensus        15 ~~~~d~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-v~~wd~~~~~~~~~~~~~--~~~v~~~   89 (113)
                      .|-.-|.|.+-|+...+.  ...+..|...|.+++++ .+|..+++++..|+ ||+||..+++.+..++..  ...++++
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            366678899988865554  46778899999999999 99999999999997 899999999998888743  3579999


Q ss_pred             EEccCCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|||++.++++++..|++++|.++
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEee
Confidence            999999999999999999999874

>KOG1408|consensus

Probab=99.66  E-value=3.7e-15  Score=96.03  Aligned_cols=108  Identities=29%  Similarity=0.439  Sum_probs=100.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC---CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG---HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      .++.|+.+++++++.|+.|+||++..++..+.|++   |.+....+... |.+.++++...|.++.++|..+++++..+.
T Consensus       602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhc
Confidence            46788999999999999999999999999999975   55667788888 779999999999999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +|...|..+.|.+|-++|++.+.||.|-+|.+
T Consensus       681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             CcchheeeeeecccchhheeecCCceEEEEEC
Confidence            99999999999999999999999999999976

>KOG1063|consensus

Probab=99.66  E-value=1.7e-15  Score=96.53  Aligned_cols=110  Identities=20%  Similarity=0.369  Sum_probs=95.1

Q ss_pred             CcceEcCCCCEEEeeecC-----CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc--
Q psy3639           2 GVPRVTSSPQRCLTGSYD-----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--   74 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~--   74 (113)
                      .+++.+|++++++++...     ..|++|+..+-...+.+.+|.-.|+.++|+ |+++++++.+.|+++.+|......  
T Consensus       529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDRt~sl~~~~~~~~~  607 (764)
T KOG1063|consen  529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDRTVSLYEVQEDIKD  607 (764)
T ss_pred             EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecCceEEeeeeecccch
Confidence            467889999999998763     457899998888888999999999999999 889999999999999999875432  


Q ss_pred             --cceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 --CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                        .....+.|...|++.+|+|++.+|++++.|.++++|..
T Consensus       608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             hhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence              22335678889999999999999999999999999965

>KOG0772|consensus

Probab=99.66  E-value=2.6e-15  Score=93.37  Aligned_cols=111  Identities=18%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeE------------EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC------------TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      +..++++.+..+++.+.....+++|-.....+.            .-++|...+++.+|+|.+...+++++.||++++||
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD  297 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence            456889999988888778889999965333222            23589999999999998889999999999999999


Q ss_pred             CCccc-cceeec-----ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          70 SAKEE-CIQTYR-----GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        70 ~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +...+ .+..++     +..-++...+|+|+|..++.++.||.|.+|+.
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~  346 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK  346 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence            97653 233332     12235788999999999999999999999985

>KOG0268|consensus

Probab=99.66  E-value=3.9e-16  Score=93.36  Aligned_cols=110  Identities=17%  Similarity=0.238  Sum_probs=94.0

Q ss_pred             CcceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceee
Q psy3639           2 GVPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~   79 (113)
                      .++.++|... .|++++.|+.|.+||++++.+++.+. .+.....++|+| ....++++++|..+..+|++.. .++..+
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhh
Confidence            3456777654 67778899999999999998887665 445568999995 8889999999999999999875 577888


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|.+.|.+++|||.|.-+++|+.|.+|+||.++
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            8999999999999999999999999999999763

>KOG0301|consensus

Probab=99.65  E-value=2.2e-15  Score=95.99  Aligned_cols=96  Identities=29%  Similarity=0.489  Sum_probs=87.5

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTF   91 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~   91 (113)
                      .+++|+.|++|++|.-  ++.++++.+|+.-|..+++- + ...+++++.||.|++|++ +++++..+.+|..-+++++.
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl-~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL-D-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             cEEeccCcceeeeccC--CchhhhhccchhheeeeEEe-c-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            7899999999999985  77889999999999999997 3 457889999999999998 88889999999999999998


Q ss_pred             ccCCCEEEEeecCCcEEEeec
Q psy3639          92 SPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+++..++++++|+++++|+-
T Consensus       228 ~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  228 ALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             cCCCCeEEEecCCceEEEeec
Confidence            888889999999999999974

>KOG4378|consensus

Probab=99.65  E-value=1.7e-15  Score=94.04  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=92.6

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ..+++..+ +|.+++++|.|.+||+....+...+ +.|..|...++|+|.+..++++.+.|..|.+||....+....+. 
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-  248 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-  248 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-
Confidence            45677665 5667999999999999876666544 56999999999999999999999999999999998776555554 


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...+...++|.++|.+|+.|+..|.|..||+|
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            45678899999999999999999999999986

>KOG0290|consensus

Probab=99.65  E-value=6.7e-15  Score=86.14  Aligned_cols=105  Identities=28%  Similarity=0.491  Sum_probs=85.1

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCee---eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc----------
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC----------   75 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~----------   75 (113)
                      +.+++.+++-|.+..+||++++..   ...+-.|...|.+++|....-..|++.+.||.+++||++..+.          
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            457899999999999999998732   3345569999999999954456899999999999999754311          


Q ss_pred             --------------------------------------ceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          76 --------------------------------------IQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        76 --------------------------------------~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                                                            +..++.|...|+.++|.| .+.++++++.|-...+||+.
T Consensus       242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence                                                  222356889999999999 66789999999999999973

>KOG0647|consensus

Probab=99.65  E-value=7.9e-15  Score=86.03  Aligned_cols=107  Identities=21%  Similarity=0.361  Sum_probs=88.2

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++|+.+|..+++|+-|+.+++||+.+++. ..+..|..+|..+.|-+... .++++|+.|.+++.||.+....+.++. 
T Consensus        77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-  154 (347)
T KOG0647|consen   77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-  154 (347)
T ss_pred             EEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-
Confidence            468899999999999999999999998854 45566999999999984333 489999999999999999998888877 


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..++++++..  .-..++++..++.|.+++|+
T Consensus       155 LPeRvYa~Dv--~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  155 LPERVYAADV--LYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             ccceeeehhc--cCceeEEEecCCcEEEEEcC
Confidence            3456666554  34568888999999999884

>KOG1009|consensus

Probab=99.65  E-value=6.2e-16  Score=93.37  Aligned_cols=110  Identities=24%  Similarity=0.403  Sum_probs=96.4

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCC--------C-----C---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIK--------S-----G---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT   64 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   64 (113)
                      +++++|+|+|+++++|+++|.+.+|-..        +     .   .....+.+|...+..++|+ +++..+++++.|+.
T Consensus        68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns  146 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNS  146 (434)
T ss_pred             eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccce
Confidence            4788999999999999999999999765        2     1   1234556799999999999 88999999999999


Q ss_pred             EEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +++||+..++.+..+..|...+..++|.|.+.++++-+.|+..+.+.
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence            99999999999999999999999999999999999988887666554

>KOG1188|consensus

Probab=99.64  E-value=4.5e-15  Score=88.17  Aligned_cols=103  Identities=20%  Similarity=0.348  Sum_probs=84.8

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCC-CCCEEEEEeCCCcEEEEeCCccccce------------
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWASAKEECIQ------------   77 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~v~~wd~~~~~~~~------------   77 (113)
                      ..++++-.+|.|++||..++..+..++++...+..++|... .+..+.+++.||+|++||+++.....            
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            45888888999999999999999999999998888888733 57789999999999999975431100            


Q ss_pred             -e--------------------------------------ecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          78 -T--------------------------------------YRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 -~--------------------------------------~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                       .                                      ...|...|.+++|+| +.+.|++|+.||-+.+||++
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence             0                                      024677899999999 77889999999999999974

>KOG1036|consensus

Probab=99.64  E-value=1.9e-14  Score=84.42  Aligned_cols=99  Identities=19%  Similarity=0.368  Sum_probs=83.4

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      ...+++|+.||.|+.+|+.++...+.. .|..++.++..+ +....+++|+.|++|++||.+.......+. ....|.++
T Consensus        65 ~~~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~  141 (323)
T KOG1036|consen   65 ESTIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM  141 (323)
T ss_pred             CceEEEeccCceEEEEEecCCcceeec-cCCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence            567899999999999999988766444 499999999999 667889999999999999999866556555 33478877


Q ss_pred             EEccCCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..  .|+.|++|+.+..+.+||+|
T Consensus       142 ~v--~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen  142 DV--SGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             ec--cCCEEEEeecCceEEEEEcc
Confidence            65  68899999999999999986

>KOG0288|consensus

Probab=99.64  E-value=1.1e-14  Score=88.35  Aligned_cols=102  Identities=27%  Similarity=0.402  Sum_probs=87.9

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc----cc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----SA   84 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~----~~   84 (113)
                      .+..+++|..|++|++||.++.........+. .|+++..+ .++..+.+++-|..+.+.|.++.+....+...    ..
T Consensus       311 ~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as  388 (459)
T KOG0288|consen  311 SISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS  388 (459)
T ss_pred             cceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence            36678889999999999999998888888665 89999999 78888888999999999999998766666532    23


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ....+.|||++.|+++|+.||.|+||++
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEc
Confidence            4678999999999999999999999986

>KOG0649|consensus

Probab=99.64  E-value=3e-14  Score=81.82  Aligned_cols=108  Identities=16%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      +..-+.|+.+.++.++.|+.++-||+++|+...++++|+.-+.++.-. .....+.+|++||++++||+++.+.+..+..
T Consensus       118 Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  118 NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEecc
Confidence            445567888878877789999999999999999999999999999986 4556788999999999999999988776653


Q ss_pred             cc----------cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HS----------AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~----------~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+          ..|-+++  .+..++++ +....+.+|+++
T Consensus       197 yk~~~~lRp~~g~wigala--~~edWlvC-GgGp~lslwhLr  235 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALA--VNEDWLVC-GGGPKLSLWHLR  235 (325)
T ss_pred             ccChhhcCcccCceeEEEe--ccCceEEe-cCCCceeEEecc
Confidence            22          2233333  34555544 456678889875

>KOG0299|consensus

Probab=99.64  E-value=6.1e-15  Score=90.27  Aligned_cols=111  Identities=23%  Similarity=0.449  Sum_probs=97.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeee----EE-------------e-eCCCCeEEEEEEcCCCCCEEEEEeCCC
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEI----CT-------------Y-RGHQNVVYAVAFSEPYGDKILTGSFDK   63 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~   63 (113)
                      .+++++|++++.++++.+++|.-|++.+++..    ..             - +.|...+.+++.+ +++.++++|+.|.
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~Dgkylatgg~d~  224 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SDGKYLATGGRDR  224 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CCCcEEEecCCCc
Confidence            45678999999999999999999998877532    01             1 2577789999999 8999999999999


Q ss_pred             cEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        64 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .|.+|++++.+.+..+.+|.+.|.+++|-...+-+++++.|+.+++|+++
T Consensus       225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh
Confidence            99999999999999999999999999998877889999999999999863

>KOG0300|consensus

Probab=99.63  E-value=1e-14  Score=86.59  Aligned_cols=108  Identities=23%  Similarity=0.441  Sum_probs=91.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-cceeec
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~~~~   80 (113)
                      -++-+|+.+++++++.|.+.++||++.. ..+..|.+|+..|++..|. . +..+++|+.|.+|++||+++.. ++.++.
T Consensus       319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~-~-dd~vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN-T-DDRVVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             ccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe-c-CCceeecCCCceEEEeeeccccCcceeee
Confidence            4567889999999999999999999744 4678899999999999997 4 5678999999999999999874 455665


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                       -.++++.++.+..+..++.-..++.+++||+.
T Consensus       397 -tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  397 -TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             -cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence             45678889999877788888889999999984

>KOG0321|consensus

Probab=99.63  E-value=3.2e-15  Score=94.69  Aligned_cols=109  Identities=22%  Similarity=0.356  Sum_probs=85.3

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEE--eeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc--c-----
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICT--YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--C-----   75 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~--~-----   75 (113)
                      .+.|....|++++.|.+++.||+++.++...  +.+|...+.+++|.|.+...|++|+.||.+.+||++-..  .     
T Consensus       107 ~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~  186 (720)
T KOG0321|consen  107 KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD  186 (720)
T ss_pred             ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence            3566556888999999999999999988766  889999999999998888999999999999999975321  0     


Q ss_pred             --------------------ceeecccccceEE---EEEccCCCEEEEeec-CCcEEEeecC
Q psy3639          76 --------------------IQTYRGHSAEVVG---VTFSPDQSTFCSCSM-DHTARIFNTM  113 (113)
Q Consensus        76 --------------------~~~~~~~~~~v~~---~~~~~~~~~~~~~~~-~~~i~~~~~~  113 (113)
                                          ......+...+.+   +-+..|...|++++. |+.|+|||++
T Consensus       187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence                                0111123333443   555678889999888 9999999986

>KOG1007|consensus

Probab=99.63  E-value=4.3e-15  Score=86.90  Aligned_cols=106  Identities=22%  Similarity=0.317  Sum_probs=87.9

Q ss_pred             eEcC--CCCEEEeeecCCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeec
Q psy3639           5 RVTS--SPQRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYR   80 (113)
Q Consensus         5 ~~~~--~~~~~~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~   80 (113)
                      +|+|  +++.+++.+ |+++..||+++.+....+ ..|...+.++.|+|.....+++++.||.|++||.+.. .++..+.
T Consensus       177 ~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            4555  667787775 688999999987765555 4588899999999777778999999999999999864 5788999


Q ss_pred             ccccceEEEEEccC-CCEEEEeecCCcEEEee
Q psy3639          81 GHSAEVVGVTFSPD-QSTFCSCSMDHTARIFN  111 (113)
Q Consensus        81 ~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~  111 (113)
                      +|.-.++++.|+|. ...+++++.|..+.+|.
T Consensus       256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             CCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            99999999999994 45678899999988875

>KOG1272|consensus

Probab=99.63  E-value=7.1e-16  Score=94.69  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA   84 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~   84 (113)
                      .|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++.+ |.+..+-.|..+|+|.+|...+.+++-.+-.|.+
T Consensus       216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g  294 (545)
T KOG1272|consen  216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG  294 (545)
T ss_pred             cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcCCCceEEecCCCCcchHHHHHhcCC
Confidence            456666788899999999999999999999998888888999999 6678889999999999999999998888888999


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +|.++++.++|+++++.+.|+.++|||+|
T Consensus       295 ~V~siAv~~~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  295 PVSSIAVDRGGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             CcceEEECCCCcEEeecccccceeEeeec
Confidence            99999999999999999999999999986

>KOG0288|consensus

Probab=99.63  E-value=1.2e-14  Score=88.25  Aligned_cols=106  Identities=18%  Similarity=0.285  Sum_probs=91.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC----CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG----HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      ...++++..+++++.|.++.+.|.++....+++..    .....+.+.|+ |++.++++|+.||.|++|++.++++...+
T Consensus       347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEEEccCceEEEEe
Confidence            45678899999999999999999998887776642    22346788899 88999999999999999999999888777


Q ss_pred             ccccc--ceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          80 RGHSA--EVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        80 ~~~~~--~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      .....  .|.++.|+|.|..+++++.++.+.+|
T Consensus       426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            76554  49999999999999999999999998

>KOG0301|consensus

Probab=99.62  E-value=3.1e-14  Score=90.92  Aligned_cols=98  Identities=23%  Similarity=0.475  Sum_probs=85.3

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      +..+++++.||.|++|++ +++.+.++.+|+..+.+++.. .++..++++++|+++++|+..  ++.+.+......+++.
T Consensus       190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa  265 (745)
T KOG0301|consen  190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSA  265 (745)
T ss_pred             CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEE
Confidence            346899999999999998 699999999999999999977 668899999999999999876  6667777566689999


Q ss_pred             EEccCCCEEEEeecCCcEEEeec
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+-++|+ +++|+.||.|+||..
T Consensus       266 ~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  266 KVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             EEeeCCC-EEEeccCceEEEEEe
Confidence            9888887 778889999999964

>KOG1009|consensus

Probab=99.62  E-value=1e-14  Score=88.26  Aligned_cols=107  Identities=21%  Similarity=0.452  Sum_probs=87.4

Q ss_pred             EcCCCC-EEEeeecCCeEEEeeCCCCe---------eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC----
Q psy3639           6 VTSSPQ-RCLTGSYDRTCKLWDIKSGH---------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA----   71 (113)
Q Consensus         6 ~~~~~~-~~~~~~~d~~v~i~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~----   71 (113)
                      +..+.. .+++|+.|..|++|-+..+.         -...+..|...|+.+.|+ ++++.+++|+.+|.+.+|...    
T Consensus        21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLASg~D~g~v~lWk~~~~~~   99 (434)
T KOG1009|consen   21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLASGGDGGEVFLWKQGDVRI   99 (434)
T ss_pred             eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeeeecCCCceEEEEEecCcCC
Confidence            445554 89999999999999875432         234566799999999999 889999999999999999654    


Q ss_pred             ----c--------cccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          72 ----K--------EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        72 ----~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                          +        ......+.+|...++.++|+|+++++++++.|+.+++||+.
T Consensus       100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen  100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence                2        12234556788899999999999999999999999999974

>KOG2394|consensus

Probab=99.61  E-value=1.3e-14  Score=90.65  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=87.1

Q ss_pred             cceEcCCC-CEEEeeecCCeEEEeeCCC--------------C--------------eeeEEeeCCCCeEEEEEEcCCCC
Q psy3639           3 VPRVTSSP-QRCLTGSYDRTCKLWDIKS--------------G--------------HEICTYRGHQNVVYAVAFSEPYG   53 (113)
Q Consensus         3 ~~~~~~~~-~~~~~~~~d~~v~i~~~~~--------------~--------------~~~~~~~~~~~~v~~~~~~~~~~   53 (113)
                      ++.|-|.+ ..++.+-.+|.+++||..-              +              .++..+......+..++|+ +++
T Consensus       224 ~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS-~DG  302 (636)
T KOG2394|consen  224 CIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS-PDG  302 (636)
T ss_pred             EEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc-CCC
Confidence            45565644 5778888899999997531              0              0111122223467889999 699


Q ss_pred             CEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          54 DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        54 ~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .++++.+.||.+++||..+.+.+-.++..-+...+++|||||+++++|++|.-|.||.+
T Consensus       303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            99999999999999999999988888888889999999999999999999999999976

>KOG1274|consensus

Probab=99.61  E-value=3.8e-14  Score=92.74  Aligned_cols=110  Identities=25%  Similarity=0.318  Sum_probs=98.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +.++.....+|++++.+++|..|.+..+..-..+...+-++.+++++ .+|..++.|+.|-.|++-+..+......+++|
T Consensus        59 v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh  137 (933)
T KOG1274|consen   59 VSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH  137 (933)
T ss_pred             eEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeeccc
Confidence            34566677899999999999999999887665565577889999999 88999999999999999999999889999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..+|.++.|+|.+++|++.+.||.+++||+.
T Consensus       138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen  138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             CCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            9999999999999999999999999999974

>KOG2096|consensus

Probab=99.61  E-value=7.9e-14  Score=82.73  Aligned_cols=110  Identities=19%  Similarity=0.382  Sum_probs=85.6

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCe------------------------------------eeEEee-------
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGH------------------------------------EICTYR-------   37 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~------------------------------------~~~~~~-------   37 (113)
                      +.+++|+.+|+.|++++.|+.|++|+++...                                    .+..+.       
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence            3578999999999999999999999986310                                    011110       


Q ss_pred             ----------------CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEe
Q psy3639          38 ----------------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        38 ----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                                      .|...+..+-.. .++.++++++.|..|.+|+++ ++.+..+.......+..+.||+|++++++
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~  246 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS  246 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe
Confidence                            123334444444 567789999999999999998 88888888777777888999999999999


Q ss_pred             ecCCcEEEeec
Q psy3639         102 SMDHTARIFNT  112 (113)
Q Consensus       102 ~~~~~i~~~~~  112 (113)
                      +.--.+++|..
T Consensus       247 gFTpDVkVwE~  257 (420)
T KOG2096|consen  247 GFTPDVKVWEP  257 (420)
T ss_pred             cCCCCceEEEE
Confidence            99999999964

>KOG0771|consensus

Probab=99.61  E-value=1.6e-14  Score=87.50  Aligned_cols=108  Identities=19%  Similarity=0.302  Sum_probs=89.7

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee---
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~---   79 (113)
                      +++++.++..+++++.||++|+|+.+.-..+.....|...|.++.|+ +++..+++.+.| ..++|+..++.++...   
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            57899999999999999999999987777666777799999999999 889999999999 8999998766211100   


Q ss_pred             ----------------------------------------c-----------ccccceEEEEEccCCCEEEEeecCCcEE
Q psy3639          80 ----------------------------------------R-----------GHSAEVVGVTFSPDQSTFCSCSMDHTAR  108 (113)
Q Consensus        80 ----------------------------------------~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~i~  108 (113)
                                                              .           .....+.+++.+++|++++.|+.+|.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                    0           0124678899999999999999999999


Q ss_pred             Eeec
Q psy3639         109 IFNT  112 (113)
Q Consensus       109 ~~~~  112 (113)
                      +++.
T Consensus       307 i~~~  310 (398)
T KOG0771|consen  307 IYDA  310 (398)
T ss_pred             EEEe
Confidence            9875

>KOG1332|consensus

Probab=99.60  E-value=1.3e-14  Score=83.13  Aligned_cols=101  Identities=23%  Similarity=0.363  Sum_probs=82.3

Q ss_pred             CEEEeeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCC---CEEEEEeCCCcEEEEeCCcc--c-cceeeccc
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYG---DKILTGSFDKTLKLWASAKE--E-CIQTYRGH   82 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~v~~wd~~~~--~-~~~~~~~~   82 (113)
                      +.|++|+-|..|+||....++  ...++.+|...|.+++|.|..+   ..+++++.||++.+|-....  . ....+...
T Consensus       176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f  255 (299)
T KOG1332|consen  176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF  255 (299)
T ss_pred             ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence            569999999999999987653  4456889999999999997654   47999999999999965522  1 12233334


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ...+++++||+.|+.|++++.|+.+.+|.
T Consensus       256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  256 PDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            57899999999999999999999999995

>KOG2106|consensus

Probab=99.60  E-value=5.3e-14  Score=87.52  Aligned_cols=102  Identities=18%  Similarity=0.273  Sum_probs=87.4

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA   84 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~   84 (113)
                      +.+|+.+.+++++.|+.+++|+  ..+++.+.. ...++.++.|+ |.+ .++.|...|...+.|..+...+.... .+.
T Consensus       375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~  448 (626)
T KOG2106|consen  375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNE  448 (626)
T ss_pred             EcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEe-cCC
Confidence            5678889999999999999999  566666655 66788999999 556 89999999999999998866555554 488


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ++..++|+|+|.++++++.|+.|++|.+
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999999999865

>KOG4328|consensus

Probab=99.60  E-value=1.3e-14  Score=88.91  Aligned_cols=112  Identities=19%  Similarity=0.317  Sum_probs=89.0

Q ss_pred             CcceEcCCCC--EEEeeecCCeEEEeeCCCC----eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc
Q psy3639           2 GVPRVTSSPQ--RCLTGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC   75 (113)
Q Consensus         2 ~~~~~~~~~~--~~~~~~~d~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~   75 (113)
                      .+.+|+|..+  ++++|+..|.|-+||+.+.    ..+..+..|..+|.++.|+|.+...+++.+.||+|++-|+.....
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~  269 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS  269 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh
Confidence            4567888664  8899999999999999533    235567789999999999999999999999999999998643210


Q ss_pred             ---------------------------------------------ceeecccccceEEEEEcc-CCCEEEEeecCCcEEE
Q psy3639          76 ---------------------------------------------IQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARI  109 (113)
Q Consensus        76 ---------------------------------------------~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~  109 (113)
                                                                   ...+..|+..|.+++++| ...++++++.|++.+|
T Consensus       270 e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI  349 (498)
T KOG4328|consen  270 EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI  349 (498)
T ss_pred             HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence                                                         011123567899999999 5567899999999999


Q ss_pred             eecC
Q psy3639         110 FNTM  113 (113)
Q Consensus       110 ~~~~  113 (113)
                      ||+|
T Consensus       350 WD~R  353 (498)
T KOG4328|consen  350 WDLR  353 (498)
T ss_pred             eehh
Confidence            9986

>KOG1007|consensus

Probab=99.57  E-value=5.3e-14  Score=82.44  Aligned_cols=111  Identities=18%  Similarity=0.357  Sum_probs=86.2

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCee-eEEee-----CCCCeEEEEEEcC-CCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE-ICTYR-----GHQNVVYAVAFSE-PYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      |+|+-|.|++..+++-. |..|.+|++..++. +..+.     ++....++-+|+| .+++.+++ ..|+++..||+++.
T Consensus       126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~  203 (370)
T KOG1007|consen  126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM  203 (370)
T ss_pred             eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccch
Confidence            46788999999888876 56789999987765 33332     3456678899997 45555554 56789999999998


Q ss_pred             ccceee-cccccceEEEEEccCCC-EEEEeecCCcEEEeecC
Q psy3639          74 ECIQTY-RGHSAEVVGVTFSPDQS-TFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~  113 (113)
                      ++...+ ..|.+.+..+.|+|+.. +|++++.|+.+++||+|
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R  245 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR  245 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence            766555 46788899999999766 46788999999999986

>KOG2919|consensus

Probab=99.57  E-value=5.8e-14  Score=83.34  Aligned_cols=111  Identities=14%  Similarity=0.276  Sum_probs=90.8

Q ss_pred             CcceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCcc-cccee
Q psy3639           2 GVPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAKE-ECIQT   78 (113)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~~-~~~~~   78 (113)
                      .+.+++|... .++.++....+-||+-...++++.+-+|.+.|+.+.|+ ++|+.+.+|.. +-+|..||++.. ..+..
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeehhccchhhh
Confidence            4667888654 89999999999999988889999999999999999999 77888777765 668999999865 56666


Q ss_pred             eccccc-ceEE--EEEccCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSA-EVVG--VTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~-~v~~--~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +..|.. .-..  +...|++++|++|+.+|.|++||++
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            665543 2333  4557899999999999999999974

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.57  E-value=3.7e-13  Score=80.44  Aligned_cols=108  Identities=9%  Similarity=0.115  Sum_probs=79.4

Q ss_pred             ceEcCCCCEEEe-eecCCeEEEeeCCCCeeeEEeeCCC-------CeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccc
Q psy3639           4 PRVTSSPQRCLT-GSYDRTCKLWDIKSGHEICTYRGHQ-------NVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         4 ~~~~~~~~~~~~-~~~d~~v~i~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~   74 (113)
                      .+++++++.++. +..++.+++||+.+++.+..+..+.       .....++++ ++++.+ ++...++.+.+||..+++
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYE  240 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCc
Confidence            467899987754 4568999999999888766654221       123467888 667664 444556789999998877


Q ss_pred             cceeecccccceEEEEEccCCCEEEEe-ecCCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSPDQSTFCSC-SMDHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~  113 (113)
                      .+.... +...+.+++|+|+|.+++++ ..++.|.+||++
T Consensus       241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            655443 34568899999999998876 468999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.57  E-value=1.8e-14  Score=91.41  Aligned_cols=103  Identities=19%  Similarity=0.322  Sum_probs=87.7

Q ss_pred             CCEEEeeecCCeEEEeeCCCCee------eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee--ecc
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHE------ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT--YRG   81 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~--~~~   81 (113)
                      .+.|+.+.+||.|.++|......      +.....|...|.++.|- +....|++++.|.++++||+..++....  +.+
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa-pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA-PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC-CCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            35788999999999999864321      23344689999999999 5778899999999999999999887766  888


Q ss_pred             cccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |...+.+++|.| +...|++|+.||.+.|||++
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            999999999999 66788999999999999985

>KOG2048|consensus

Probab=99.57  E-value=3.1e-13  Score=86.22  Aligned_cols=108  Identities=13%  Similarity=0.281  Sum_probs=90.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc--eeecc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI--QTYRG   81 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~--~~~~~   81 (113)
                      .+|+ .+..|.+.+.+|.|.-||+.+.+....++...+.+.+++.+ +.+..++.|+.||.+..++...++..  ..+..
T Consensus        75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            3555 34567777789999999999999999999999999999999 66788999999997777777666533  33445


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .++++.+++|+|++..++.|+.||.|++||..
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            57899999999999999999999999999973

>KOG4227|consensus

Probab=99.56  E-value=1.1e-13  Score=84.27  Aligned_cols=112  Identities=11%  Similarity=0.196  Sum_probs=95.8

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCC------CeeeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKS------GHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      ++...|+.++++|++|+.|..+++|++..      .++++... .|...|.+++|. ..+..+++|..+++|...|+.+.
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-~~N~~~~SG~~~~~VI~HDiEt~  137 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-LENRFLYSGERWGTVIKHDIETK  137 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-cCCeeEecCCCcceeEeeecccc
Confidence            35667899999999999999999999853      35565554 367899999999 77889999999999999999999


Q ss_pred             ccceeeccc--ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          74 ECIQTYRGH--SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.+..+...  .+.|+.+..+|..+.|++.+.++.+.+||.+
T Consensus       138 qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  138 QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            888877633  3589999999999999999999999999975

>KOG1034|consensus

Probab=99.56  E-value=1e-13  Score=82.34  Aligned_cols=67  Identities=33%  Similarity=0.646  Sum_probs=59.6

Q ss_pred             ceEcCC-CCEEEeeecCCeEEEeeCCCCeeeEEe---eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSS-PQRCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~-~~~~~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~   71 (113)
                      +.+.|. .+++++++.|..|++||+.+..++..+   .+|...|.++.|+ .++..+++++.|..+++|++.
T Consensus       141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecC
Confidence            455664 479999999999999999999988776   5799999999999 889999999999999999976

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.55  E-value=5.6e-13  Score=79.66  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=79.4

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccceeecccccceEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHSAEVVG   88 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~   88 (113)
                      +..+++++.|+.+++||..+++.+..+..+.. +..++++ +++..+ +++..++.+++||..+++.+..+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence            35788999999999999999998888875544 5679999 666655 667788999999999887766665433 3467


Q ss_pred             EEEccCCCEEEEe-ecCCcEEEeecC
Q psy3639          89 VTFSPDQSTFCSC-SMDHTARIFNTM  113 (113)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~~i~~~~~~  113 (113)
                      +.|+|+++.++++ ..++.+++||++
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECC
Confidence            8999999977655 568999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328|consensus

Probab=99.55  E-value=5.3e-14  Score=86.35  Aligned_cols=108  Identities=20%  Similarity=0.286  Sum_probs=87.6

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCee-eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc----eee
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI----QTY   79 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~----~~~   79 (113)
                      .++.....++.++.=|...+||.+++.. ...+..|...|..++++|-...++++++.|+++++||++.....    ..-
T Consensus       286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst  365 (498)
T KOG4328|consen  286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST  365 (498)
T ss_pred             cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence            3445555677777767889999988764 56667788899999999988999999999999999999864322    222


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      -.|...|.+..|||.+-.+++.+.|..|+|||.
T Consensus       366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             ccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            347889999999998888999999999999985

>KOG0303|consensus

Probab=99.55  E-value=8e-14  Score=84.47  Aligned_cols=109  Identities=17%  Similarity=0.357  Sum_probs=89.3

Q ss_pred             CcceEcCCC-CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           2 GVPRVTSSP-QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      ..++|+|.- +.|++++.|..|.+||+.+++.+.++. |...|.++.|+ .+|.++++.+.|.+|++||.++++.+..-.
T Consensus       135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            356777754 578899999999999999999988888 99999999999 999999999999999999999999888777


Q ss_pred             cccc-ceEEEEEccCCCEEEEee---cCCcEEEeec
Q psy3639          81 GHSA-EVVGVTFSPDQSTFCSCS---MDHTARIFNT  112 (113)
Q Consensus        81 ~~~~-~v~~~~~~~~~~~~~~~~---~~~~i~~~~~  112 (113)
                      +|.+ .-....|-.+|..+-+|-   .++.+-+||.
T Consensus       213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp  248 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDP  248 (472)
T ss_pred             cccCCCcceeEEeccCceeeeccccccccceeccCc
Confidence            6754 344566777888443332   2577888874

>KOG0649|consensus

Probab=99.53  E-value=6.4e-13  Score=76.48  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        43 v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.++...|..+..+ .++.|+.++.||+++++...++++|+..+.++.--.....+++|++||++++||++
T Consensus       117 INam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k  186 (325)
T KOG0649|consen  117 INAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK  186 (325)
T ss_pred             cceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc
Confidence            45555554444444 44588999999999999999999999999999873334458899999999999975

>KOG2919|consensus

Probab=99.52  E-value=4.2e-13  Score=79.77  Aligned_cols=110  Identities=16%  Similarity=0.341  Sum_probs=90.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeC-CCCee--eE-E----eeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDI-KSGHE--IC-T----YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~-~~~~~--~~-~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      ..+|+|+|..+++|- ...|++||+ +.|..  .. +    -.+..+-+.+++++|.+...++.++....+-+|.-....
T Consensus       163 sL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~  241 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR  241 (406)
T ss_pred             eEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence            468999999988775 578999998 44432  11 1    123467789999998888899999999999999888888


Q ss_pred             cceeecccccceEEEEEccCCCEEEEeec-CCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~  113 (113)
                      ++..+.+|.+.|..++|.++|+.|++|.. +..|..||+|
T Consensus       242 pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  242 PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            89999999999999999999999988765 6789999986

>KOG2055|consensus

Probab=99.52  E-value=5.6e-13  Score=82.09  Aligned_cols=106  Identities=15%  Similarity=0.260  Sum_probs=93.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      ..+++++++++..+..|.|.+-...+++.+..++ ..+.+..+.|+ .++..+++.+.+|.|.+||++...+++.+... 
T Consensus       309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-  385 (514)
T KOG2055|consen  309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-  385 (514)
T ss_pred             eEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEeec-
Confidence            4678999999999999999999999999998888 77889999999 88899999999999999999999888888733 


Q ss_pred             cce--EEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          84 AEV--VGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        84 ~~v--~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.+  .+++.+++|.+|++|+..|.|.|||.
T Consensus       386 G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  386 GSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             CccceeeeeecCCCceEEeccCcceEEEecc
Confidence            333  45777789999999999999999985

>KOG1408|consensus

Probab=99.52  E-value=4.7e-13  Score=86.64  Aligned_cols=62  Identities=15%  Similarity=0.392  Sum_probs=53.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCccccceeecc---cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          51 PYGDKILTGSFDKTLKLWASAKEECIQTYRG---HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      |.-.++++++.|..|++||+.+++..+.+++   +++....+...|.|.++++.+.|.++.++|.
T Consensus       606 p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  606 PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             CCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence            5566788999999999999999988888875   4466778999999999999999999999985

>KOG0307|consensus

Probab=99.50  E-value=2.7e-14  Score=94.92  Aligned_cols=110  Identities=20%  Similarity=0.182  Sum_probs=88.0

Q ss_pred             ceEcCCCCE----EEeeecCCeEEEeeCCCC------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           4 PRVTSSPQR----CLTGSYDRTCKLWDIKSG------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         4 ~~~~~~~~~----~~~~~~d~~v~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .+|.+.+..    ++.|.+||.|.+||...-      ..+.++..|.+.|..+.|++..++.+++|+.||.|.+||+...
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~  149 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP  149 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc
Confidence            356665554    888999999999998652      2456777899999999999888889999999999999999876


Q ss_pred             ccceeecc--cccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          74 ECIQTYRG--HSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.-..+..  ..+.|.+++|+. ..+.|++++.+|...|||+|
T Consensus       150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            54444421  346789999987 44567889999999999986

>KOG1538|consensus

Probab=99.49  E-value=5.6e-13  Score=85.84  Aligned_cols=107  Identities=21%  Similarity=0.383  Sum_probs=86.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--------c
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--------E   74 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--------~   74 (113)
                      -+++.|+|..++.+..+ .+.+||...|..++++++|...|.+++++ .+|..+++|+.|..|.+|..+-.        .
T Consensus        17 d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D   94 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYSHND   94 (1081)
T ss_pred             eeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceeeeccCC
Confidence            36899999877776654 58899999999999999999999999999 99999999999999999974321        0


Q ss_pred             cceee----------------------------c-ccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          75 CIQTY----------------------------R-GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        75 ~~~~~----------------------------~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .++.+                            + .....+.+.+|..||.+++.|-.+|+|.+-+
T Consensus        95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence            11100                            0 1234678889999999999999999998754

>KOG2445|consensus

Probab=99.48  E-value=1.6e-12  Score=76.77  Aligned_cols=101  Identities=14%  Similarity=0.287  Sum_probs=80.3

Q ss_pred             CEEEeeecC-----CeEEEeeCCCCe----eeEEeeCCCCeEEEEEEcCCCCC---EEEEEeCCCcEEEEeCCcc-----
Q psy3639          11 QRCLTGSYD-----RTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGD---KILTGSFDKTLKLWASAKE-----   73 (113)
Q Consensus        11 ~~~~~~~~d-----~~v~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~v~~wd~~~~-----   73 (113)
                      .+++.|+.+     +.+.||....+.    .+.++.+|+.+|.+++|.|..|.   .+++++.|| |++|.+...     
T Consensus       185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~  263 (361)
T KOG2445|consen  185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE  263 (361)
T ss_pred             ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh
Confidence            467777765     367888765442    34566789999999999976664   689999999 999987631     


Q ss_pred             ---------------ccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          74 ---------------ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                     +.+..+..|.++|+.+.|+-.|..|.+.+.||.+++|..
T Consensus       264 ~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  264 EEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             hhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence                           234556788999999999999999999999999999953

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=1.5e-11  Score=70.06  Aligned_cols=106  Identities=14%  Similarity=0.209  Sum_probs=70.6

Q ss_pred             ceEcCCCCEEEeeec----------CCeEEEeeCCC-CeeeEEeeC-CCCeEEEEEEcCCCCCEEEE--EeCCCcEEEEe
Q psy3639           4 PRVTSSPQRCLTGSY----------DRTCKLWDIKS-GHEICTYRG-HQNVVYAVAFSEPYGDKILT--GSFDKTLKLWA   69 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~----------d~~v~i~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~--~~~~~~v~~wd   69 (113)
                      ..|+++|+.|+.-..          -+...+|-++. +.....+.- ..++|.+++|+ |++..++.  |..++.+.+||
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~Ws-P~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWS-PNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEEC-cCCCEEEEEEccCCcccEEEc
Confidence            357888987664333          12334444422 223333332 34579999999 66666543  44567999999


Q ss_pred             CCccccceeecccccceEEEEEccCCCEEEEeecC---CcEEEeecC
Q psy3639          70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMD---HTARIFNTM  113 (113)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~  113 (113)
                      ++ .+.+..+.  ......+.|+|+|+++++++.+   |.+.+||++
T Consensus        90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            96 55556554  4567889999999999998754   569999974

>KOG0280|consensus

Probab=99.47  E-value=3.1e-12  Score=75.15  Aligned_cols=110  Identities=18%  Similarity=0.240  Sum_probs=88.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-cccccee-e
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEECIQT-Y   79 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~-~~~~~~~-~   79 (113)
                      ..|++.+..++++..+|.+.+-+.....  ..+.++.|.-+..-.+|+..+++.+++|+.|+.+..||++ .++.+.. .
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~  206 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS  206 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence            3467778888888888988855544443  3447888999999999987778899999999999999999 4444544 4


Q ss_pred             cccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.|...|.++.-+| .+.++++|+.|..|++||+|
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            56788999998887 67899999999999999986

>KOG2048|consensus

Probab=99.47  E-value=2.7e-12  Score=82.04  Aligned_cols=106  Identities=22%  Similarity=0.390  Sum_probs=89.2

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee--------CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR--------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC   75 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~   75 (113)
                      +.|++++..++.|+.||.|++||..++..+....        ....-|.++.+-  ....+++|+..|+|.+||...+..
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcch
Confidence            4678888999999999999999999887666221        123346777765  356789999999999999999999


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +.++..|...|.+++-+++++.+++++.|+.+-.+.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            999999999999999999999999999999887664

>KOG4378|consensus

Probab=99.45  E-value=6.5e-13  Score=82.84  Aligned_cols=106  Identities=15%  Similarity=0.219  Sum_probs=89.6

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc-ccc
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-SAE   85 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~-~~~   85 (113)
                      .....++++|+..+.|+|||++.....+.+++|+..|+++..+ -...++++++..|.|.+..+.++..-..+... .+.
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            3344688899999999999999666667788999999999999 88899999999999999999998877777755 456


Q ss_pred             eEEEEEccCCCEE-EEeecCCcEEEeecC
Q psy3639          86 VVGVTFSPDQSTF-CSCSMDHTARIFNTM  113 (113)
Q Consensus        86 v~~~~~~~~~~~~-~~~~~~~~i~~~~~~  113 (113)
                      +..+.|+|..+++ .+++.+|.+.+||+.
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQ  195 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEecc
Confidence            7789999977654 578999999999973

>KOG1188|consensus

Probab=99.45  E-value=4e-12  Score=75.91  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=60.7

Q ss_pred             CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc----ccceeecccccceEEEEEccCC-CEEEEeecCCcEEEeec
Q psy3639          38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQTYRGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNT  112 (113)
Q Consensus        38 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~  112 (113)
                      .|..-|++++|+|.+++.+++|+.||.+.+||+...    ..+.++. +...|..+.|...+ ..+.+-+..++..+|++
T Consensus       163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            577889999999999999999999999999998653    2334444 66789999998877 24777778889999987


Q ss_pred             C
Q psy3639         113 M  113 (113)
Q Consensus       113 ~  113 (113)
                      +
T Consensus       242 e  242 (376)
T KOG1188|consen  242 E  242 (376)
T ss_pred             c
Confidence            4

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.45  E-value=1.2e-11  Score=75.91  Aligned_cols=109  Identities=37%  Similarity=0.582  Sum_probs=90.8

Q ss_pred             cceEcCCCCEEEeeec-CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC-EEEEEeCCCcEEEEeCCccccce-ee
Q psy3639           3 VPRVTSSPQRCLTGSY-DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQ-TY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~wd~~~~~~~~-~~   79 (113)
                      ..+++|++..++.++. ++.+++|+...+..+..+.+|...+.+++++ +.+. .+++++.|+.+++||...+..+. .+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~  238 (466)
T COG2319         160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTL  238 (466)
T ss_pred             EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence            4578899988888875 9999999999888888999899999999999 6666 55555899999999988776666 56


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..+.... -..|+|++..+++++.++.+++|+++
T Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         239 SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             CCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            6666554 33899999888899999999999864

>KOG2110|consensus

Probab=99.45  E-value=6.5e-12  Score=75.61  Aligned_cols=107  Identities=19%  Similarity=0.240  Sum_probs=82.2

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCC---CCeEEEEEEcCCCCCEEEE-Ee-CCCcEEEEeCCcccccee
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGH---QNVVYAVAFSEPYGDKILT-GS-FDKTLKLWASAKEECIQT   78 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~-~~-~~~~v~~wd~~~~~~~~~   78 (113)
                      .++--+.+++++.-++. |+|||+++-+.++++...   ...+.++..+ ..+.+++. ++ ..|.|.+||..+.+.+..
T Consensus        91 L~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~  168 (391)
T KOG2110|consen   91 LAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN-NANCYLAYPGSTTSGDVVLFDTINLQPVNT  168 (391)
T ss_pred             EEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC-CCCceEEecCCCCCceEEEEEcccceeeeE
Confidence            34445667777776654 999999999999888754   3345666665 33334443 33 358999999999999999


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCc-EEEeec
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHT-ARIFNT  112 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~~~~  112 (113)
                      +..|++.+.+++|+++|..++++++.|+ |+|+.+
T Consensus       169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             EEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            9999999999999999999999999997 677754

>KOG3881|consensus

Probab=99.44  E-value=5.6e-12  Score=76.34  Aligned_cols=103  Identities=17%  Similarity=0.320  Sum_probs=92.9

Q ss_pred             CCEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee-ecccccceE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-YRGHSAEVV   87 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~-~~~~~~~v~   87 (113)
                      ...|++++.-+.+++||.+.++ ++..+.....+++++... +.++.++++...+.+..||.+.++.+.. +.+..+.+.
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir  294 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT-PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR  294 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec-CCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence            5689999999999999998764 677888788899999999 7899999999999999999999987766 888889999


Q ss_pred             EEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          88 GVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++..+|.+.++++++-|+-++|+|++
T Consensus       295 sih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  295 SIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             eEEEcCCCceEEeeccceeEEEeecc
Confidence            99999999999999999999999974

>KOG2055|consensus

Probab=99.44  E-value=3.7e-12  Score=78.56  Aligned_cols=111  Identities=13%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             CCcceEcCCCC-EEEeeecCCeEEEeeCCCCeee--EEeeCCC-CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc
Q psy3639           1 MGVPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEI--CTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI   76 (113)
Q Consensus         1 ~~~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~   76 (113)
                      +..++|.|+|+ .+++++....++.||+.+.+..  ....++. ..+..+..+ +++++++..+..|.|.+....+++.+
T Consensus       260 i~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  260 IQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             cceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhhhhhhh
Confidence            35678999999 8889999999999999887643  3333433 346777888 78889999999999999999999999


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+++ .++.+..+.|+.+++.++.++.+|.|++||++
T Consensus       339 ~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~  374 (514)
T KOG2055|consen  339 TSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR  374 (514)
T ss_pred             heee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence            9988 66789999999999999999999999999985

>KOG1523|consensus

Probab=99.44  E-value=4.3e-12  Score=75.29  Aligned_cols=110  Identities=15%  Similarity=0.235  Sum_probs=94.1

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc-c--cc
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-E--EC   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~-~--~~   75 (113)
                      .|-+++++...++.+..+..+.||.....   +..+++..|...++.++|+ +..+.+++++.|.-.++|...+ +  ++
T Consensus        14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~~~~~Wkp   92 (361)
T KOG1523|consen   14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQPSGGTWKP   92 (361)
T ss_pred             eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccCCCCeecc
Confidence            46688999999999999999999997654   4678889999999999999 6788899999999999998843 3  44


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...+..++....++.|+|.++.|++++..+.|.+|-+
T Consensus        93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~  129 (361)
T KOG1523|consen   93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY  129 (361)
T ss_pred             ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence            5556667888999999999999999999999998854

>KOG0307|consensus

Probab=99.44  E-value=5e-13  Score=89.15  Aligned_cols=110  Identities=18%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             cceEcCCCC-EEEeeecC---CeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           3 VPRVTSSPQ-RCLTGSYD---RTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         3 ~~~~~~~~~-~~~~~~~d---~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      .+.|+|+.- .++++++|   -.|.+||++-. .+++++++|...|.++.|++.+.+++++++.|+.+.+|+..+++.+.
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            567888774 55555553   45789998643 57788889999999999998888999999999999999999999999


Q ss_pred             eecccccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+......+..+.|+| +...++.++.||.|.|+.+
T Consensus       291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             ecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence            9998888999999999 4558889999999999876

>KOG1445|consensus

Probab=99.44  E-value=1e-12  Score=84.21  Aligned_cols=104  Identities=18%  Similarity=0.296  Sum_probs=84.5

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCee------eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHE------ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .+.++++++.|..|+||.+..+-.      ...+-+..-.+.++.|+|....+++ .+..|.+.+||+.+.+.+..+.+|
T Consensus        91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~-s~a~g~v~i~D~stqk~~~el~~h  169 (1012)
T KOG1445|consen   91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILA-SGAHGSVYITDISTQKTAVELSGH  169 (1012)
T ss_pred             chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEE-eccCceEEEEEcccCceeecccCC
Confidence            556899999999999999874421      1122333456889999955444554 455689999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...|.+..|+.||..+++++.|..|+|||-|
T Consensus       170 ~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  170 TDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             chhhhccccccCCceEeeecCCcceEEeCCc
Confidence            9999999999999999999999999999964

>KOG1587|consensus

Probab=99.42  E-value=2.1e-12  Score=82.83  Aligned_cols=107  Identities=18%  Similarity=0.245  Sum_probs=86.4

Q ss_pred             eEcCCC-CEEEeeecCCeEEEeeCC-CCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--ccceeec
Q psy3639           5 RVTSSP-QRCLTGSYDRTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYR   80 (113)
Q Consensus         5 ~~~~~~-~~~~~~~~d~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--~~~~~~~   80 (113)
                      .++|=+ +.+++++ |.++++|... ...++..++.+...+++++|+|.....|+++..+|.+.+||+...  .++.+.+
T Consensus       405 ~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~  483 (555)
T KOG1587|consen  405 SRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK  483 (555)
T ss_pred             ecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence            334433 4555665 8899999987 667787888788889999999888899999999999999998654  3444444


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ........+.|++.|+.+++|...|.++++++
T Consensus       484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             ccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            44566678899999999999999999999987

>KOG0642|consensus

Probab=99.41  E-value=4.1e-12  Score=79.85  Aligned_cols=67  Identities=30%  Similarity=0.546  Sum_probs=57.2

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCC----------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSG----------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      |+++.++++.+++|+.||+|+.|++...          .....+.||+..+..++++ .....+++++.||++++|+.
T Consensus       349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeecc
Confidence            5678999999999999999999976422          2345778999999999999 77788999999999999974

>KOG0290|consensus

Probab=99.41  E-value=3.6e-12  Score=74.94  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=79.3

Q ss_pred             CEEEeeecCCeEEEeeCCCCeee----EE-----eeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc---cee
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEI----CT-----YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---IQT   78 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~---~~~   78 (113)
                      +++++.+  -.+|+|.+...+..    ..     -..+..+++++.|+..+.+++.+.+-|-++.+||+.++..   ..+
T Consensus       114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            4566665  36999998632211    11     1236789999999988899999999999999999988633   466


Q ss_pred             ecccccceEEEEEccCC-CEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~  113 (113)
                      +-.|..+|+.++|...+ +.|++.+.||.+++||+|
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            77899999999999854 468899999999999986

>KOG2111|consensus

Probab=99.41  E-value=4.4e-11  Score=70.98  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=62.4

Q ss_pred             CCcceEcCCCCEEEeeecCCe-EEEeeCCCCeeeEEeeC--CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRT-CKLWDIKSGHEICTYRG--HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~-v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +.|++++.+|.++|+++..|+ |||||..+|..+++++.  ....+.+++|+ ++..+++.++..|+++++.++.
T Consensus       184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC-CCccEEEEEcCCCeEEEEEeec
Confidence            457788999999999999988 68999999999988863  35679999999 8899999999999999998754

>KOG1963|consensus

Probab=99.41  E-value=1.4e-11  Score=80.48  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=91.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCC--C--eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKS--G--HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      .+.+++|+++.++++..||.|.+|.--.  .  .....+.=|-..|.+++|+ ++|.++++|+..+.+.+|...+++ .+
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kq  286 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQ  286 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEeecCCC-cc
Confidence            5788999999999999999999997432  1  2234555588899999999 899999999999999999999987 34


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      -+..-.+++..+.++||+...+....|+.|++...
T Consensus       287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             cccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            44446789999999999999999999999988643

>KOG1524|consensus

Probab=99.40  E-value=3.8e-12  Score=80.20  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=84.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +-+|+|+|.-++++++||.|++|.- +|-.-.++.....+|.|++|.|.....+++.+  +.+.+=-+.....+-..+.|
T Consensus       109 ~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAH  185 (737)
T KOG1524|consen  109 SGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAH  185 (737)
T ss_pred             hcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEecc
Confidence            4468999999999999999999984 45444455557789999999966555555444  45555445555556777889


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+-|.+++|+|..+.+++|++|=..++||-
T Consensus       186 DGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  186 DGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             CcEEEEeecCccccceeecCCceeEEeecc
Confidence            999999999999999999999999999984

>KOG0322|consensus

Probab=99.39  E-value=8.6e-13  Score=76.56  Aligned_cols=67  Identities=22%  Similarity=0.344  Sum_probs=62.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      -+.+-|+++.+++++.|+.+|+|+.++..++..++.|...|.+++|+ ++...++++++|+.|.+|++
T Consensus       256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs-pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS-PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-CCCchhhhccCCceEEeeec
Confidence            45678999999999999999999999999999999999999999999 77789999999999999985

>KOG2106|consensus

Probab=99.39  E-value=4.4e-11  Score=74.89  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=87.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc-ceee-c
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-IQTY-R   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~-~~~~-~   80 (113)
                      +..|+|.+ .++.|...|.-.+.|.++...+..-. ..++++.++++ |+|..++.|+.|+.|.+|.+..... .... +
T Consensus       412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ys-p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  412 CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYS-PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             EeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEc-CCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            56789999 89999999999999998866555444 48999999999 8899999999999999998865432 2222 2


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+.+++.++.|++|++++.+.+.|-.|.+|.
T Consensus       489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  489 CSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             ecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            2348999999999999999999999999994

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.38  E-value=9.1e-11  Score=72.00  Aligned_cols=105  Identities=37%  Similarity=0.583  Sum_probs=87.5

Q ss_pred             cCCCC-EEEeeec-CCeEEEeeCCC-CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCccccceeeccc
Q psy3639           7 TSSPQ-RCLTGSY-DRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         7 ~~~~~-~~~~~~~-d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .+++. .++..+. |+.+.+|+... ......+..|...+..++++ +++..+++++. ++.+++|+......+..+..|
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH  197 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence            55565 4554444 89999999987 77888888999999999999 66777777775 999999999988888888888


Q ss_pred             ccceEEEEEccCCC-EEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQS-TFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~  112 (113)
                      ...+..++|+|++. .+++++.|+.+++||.
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~  228 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDL  228 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence            99999999999998 4555589999999975

>KOG1272|consensus

Probab=99.37  E-value=2.7e-12  Score=79.38  Aligned_cols=104  Identities=19%  Similarity=0.291  Sum_probs=84.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +.+-+|-.-.+-+|..+|+|.+|.....+++..+-.|.++|.++++. +.|.++++.+.|..+++||++.-..+.++.. 
T Consensus       256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-  333 (545)
T KOG1272|consen  256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-  333 (545)
T ss_pred             hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeeccccccceeec-
Confidence            34456666678899999999999998888887777799999999999 8899999999999999999998876776664 


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      .-+...+++|..|  ++..+....+.+|
T Consensus       334 p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  334 PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             CCCcccccccccc--ceeeecCCeeeee
Confidence            3455678887655  4455566678877

>KOG1063|consensus

Probab=99.33  E-value=3.6e-11  Score=77.44  Aligned_cols=109  Identities=18%  Similarity=0.304  Sum_probs=86.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCee----eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--ccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHE----ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--~~~   76 (113)
                      -.+|+|++++|++.+.|+++.+|+......    ....+.|+.-|.+..|+ |++.++++++.|.+|++|.....  +.+
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~-pde~~FaTaSRDK~VkVW~~~~~~d~~i  655 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS-PDEKYFATASRDKKVKVWEEPDLRDKYI  655 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC-cccceeEEecCCceEEEEeccCchhhhh
Confidence            357999999999999999999999754321    22356799999999999 78889999999999999988776  433


Q ss_pred             ee--ecccccceEEEEEcc-----CCCEEEEeecCCcEEEeec
Q psy3639          77 QT--YRGHSAEVVGVTFSP-----DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        77 ~~--~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..  ...+...|..++|.|     .+..+++|-+.|.|.+|..
T Consensus       656 ~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  656 SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence            33  223567899999987     2336788999999999973

>KOG1523|consensus

Probab=99.33  E-value=2.5e-11  Score=72.13  Aligned_cols=109  Identities=19%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc---
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~---   75 (113)
                      ++++|+|..+.+++++.|..-++|....+   ++..++..+....+++.|+ |.++.+++|+....|.+|-....+.   
T Consensus        59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWV  137 (361)
T KOG1523|consen   59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWV  137 (361)
T ss_pred             eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceeh
Confidence            46789999999999999999999998444   3444555588889999999 7789999999999999987654321   


Q ss_pred             -ceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          76 -IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        76 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                       .+.-+.+.+.|.+++|+|++-+++.|+.|+..++|.
T Consensus       138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             hhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence             122233567899999999999999999999999985

>KOG1240|consensus

Probab=99.32  E-value=1.7e-10  Score=78.47  Aligned_cols=107  Identities=15%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCC-------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--cc-
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--EC-   75 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--~~-   75 (113)
                      .++++.++++|+.||+|++||...-       +...++......+..+... +.+..++.++.||.|++.++...  +. 
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEEEEccccccccc
Confidence            3455689999999999999998532       2334454456778888888 77889999999999999876441  00 


Q ss_pred             ----------------c---------ee---------------------------ecccccceEEEEEccCCCEEEEeec
Q psy3639          76 ----------------I---------QT---------------------------YRGHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        76 ----------------~---------~~---------------------------~~~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                                      +         .+                           .....+.|.+++.+|.+++++.|+.
T Consensus      1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred             eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC
Confidence                            0         00                           0123467899999999999999999


Q ss_pred             CCcEEEeecC
Q psy3639         104 DHTARIFNTM  113 (113)
Q Consensus       104 ~~~i~~~~~~  113 (113)
                      .|.+.+||+|
T Consensus      1216 ~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1216 RGQLVLWDLR 1225 (1431)
T ss_pred             CceEEEEEee
Confidence            9999999986

>KOG0280|consensus

Probab=99.32  E-value=1.6e-11  Score=72.21  Aligned_cols=100  Identities=22%  Similarity=0.320  Sum_probs=75.2

Q ss_pred             CCCEEEeeecCCeEEEeeCCC-CeeeEE-eeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc-cccceeecccccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKS-GHEICT-YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-EECIQTYRGHSAE   85 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~-~~~~~~~~~~~~~   85 (113)
                      +++++.+|++|+.+.-||++. ++.+.. .+.|...|.+|..+|+.+..+++|+.|..+++||.+. ++++..-+ ..+.
T Consensus       177 ~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GG  255 (339)
T KOG0280|consen  177 EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGG  255 (339)
T ss_pred             CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccc
Confidence            457999999999999999983 333333 5569999999999999999999999999999999985 45555444 4578


Q ss_pred             eEEEEEccCCC-EEEEeecCCcEEE
Q psy3639          86 VVGVTFSPDQS-TFCSCSMDHTARI  109 (113)
Q Consensus        86 v~~~~~~~~~~-~~~~~~~~~~i~~  109 (113)
                      |+.+.++|.-. .++.++..+..++
T Consensus       256 VWRi~~~p~~~~~lL~~CMh~G~ki  280 (339)
T KOG0280|consen  256 VWRIKHHPEIFHRLLAACMHNGAKI  280 (339)
T ss_pred             eEEEEecchhhhHHHHHHHhcCceE
Confidence            99999998432 2333344333333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.31  E-value=1.3e-11  Score=52.56  Aligned_cols=39  Identities=36%  Similarity=0.750  Sum_probs=36.3

Q ss_pred             cccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ++++.++.+|.+.|.+++|+|+++++++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0650|consensus

Probab=99.31  E-value=1.2e-11  Score=78.65  Aligned_cols=107  Identities=25%  Similarity=0.359  Sum_probs=89.2

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC------Ccc--
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS------AKE--   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~------~~~--   73 (113)
                      -.+++|.|.-++.++.|+.+..||+.-. ++.+++.-|...+.+++++ +.-.++++++.||++.++--      ...  
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl  690 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPL  690 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc-cccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence            4578999999999999999999998754 5677888899999999999 77789999999999999842      221  


Q ss_pred             -ccceeeccccc----ceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          74 -ECIQTYRGHSA----EVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        74 -~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                       -.+..+.+|..    .|....|+|...+|++++.||+|++|
T Consensus       691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             23456666654    48888999999999999999999998

>KOG1517|consensus

Probab=99.30  E-value=8.7e-11  Score=79.02  Aligned_cols=109  Identities=17%  Similarity=0.271  Sum_probs=82.7

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc---cceeec
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---CIQTYR   80 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~---~~~~~~   80 (113)
                      .|..+..+++++++-..|+|||.......+.+. +....++.+.-.-..++.+++|..||.+++||.+...   .+...+
T Consensus      1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred             ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence            444444566666667899999998766666553 2445577777665668999999999999999987542   455666


Q ss_pred             ccccc--eEEEEEccCCCE-EEEeecCCcEEEeecC
Q psy3639          81 GHSAE--VVGVTFSPDQST-FCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~--v~~~~~~~~~~~-~~~~~~~~~i~~~~~~  113 (113)
                      .|...  |.++.+.+.|-. +++++.+|.|++||+|
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            67655  999999886655 9999999999999986

>KOG0974|consensus

Probab=99.30  E-value=3.5e-11  Score=80.02  Aligned_cols=103  Identities=23%  Similarity=0.337  Sum_probs=88.5

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeE-EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc-
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-   83 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~-   83 (113)
                      ++.++.++++.++|..+|+|++++.+... +..+|...+..+.+. ++  .+++++.|.+.++|+... +.+..+.+|. 
T Consensus       183 ~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g  258 (967)
T KOG0974|consen  183 TSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG  258 (967)
T ss_pred             EccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--eeEEeccceEEEEEeccc-ceehhhhhhhh
Confidence            46689999999999999999999988766 677899999999999 44  899999999999996543 3355777664 


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..++.++..+.....++++.|+.+++||+
T Consensus       259 ~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  259 KGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            57899999998889999999999999986

>KOG2321|consensus

Probab=99.27  E-value=5.2e-11  Score=75.58  Aligned_cols=111  Identities=13%  Similarity=0.218  Sum_probs=85.0

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee------CCC-----CeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR------GHQ-----NVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~------~~~-----~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      ++++.+++-..++++|+.+|.|-.||.++.+.+..+.      .|.     ..|++++|+ .+|..++.|..+|.+.+||
T Consensus       178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYD  256 (703)
T ss_pred             ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEE
Confidence            4577788888999999999999999998877665553      122     348999999 7799999999999999999


Q ss_pred             CCccccceeec-ccccceEEEEEccCC-CEEEEeecCCcEEEeec
Q psy3639          70 SAKEECIQTYR-GHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNT  112 (113)
Q Consensus        70 ~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~  112 (113)
                      ++..+++..-. ....++..+.|.+.+ .--++......++|||-
T Consensus       257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~  301 (703)
T KOG2321|consen  257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE  301 (703)
T ss_pred             cccCCceeecccCCccceeeecccccCCCceEEecchHHhhhccc
Confidence            99988765544 335688899997742 22333445678888973

>KOG1587|consensus

Probab=99.26  E-value=9.4e-11  Score=75.42  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=82.0

Q ss_pred             eEcC-CCCEEEeeecCCeEEEeeCCC---Ce-----eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC-ccc
Q psy3639           5 RVTS-SPQRCLTGSYDRTCKLWDIKS---GH-----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEE   74 (113)
Q Consensus         5 ~~~~-~~~~~~~~~~d~~v~i~~~~~---~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~-~~~   74 (113)
                      .|.+ +...++.|+++|.|..-+-..   ..     ....+..|.++|..+.++|-....+.+++ |.++++|... ...
T Consensus       354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~  432 (555)
T KOG1587|consen  354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS  432 (555)
T ss_pred             eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC
Confidence            4444 557899999999987633221   11     12345568899999999966566666666 8999999887 666


Q ss_pred             cceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++..+..+...+.+++||| ....|+++..+|.+.+||+.
T Consensus       433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            7777777777899999999 45678889999999999984

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.26  E-value=1.3e-09  Score=67.63  Aligned_cols=99  Identities=14%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             EEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEc
Q psy3639          13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFS   92 (113)
Q Consensus        13 ~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~   92 (113)
                      +++-..++.|.+.|..+.+.+..+......-..+.++ +++++++..+.||.|.++|+.+.+.+.+.+.. .....++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s-~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s   86 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFS-PDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVS   86 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-T-T-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE-
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEec-CCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEc
Confidence            3456678999999999999999998655554456677 88999988899999999999999988888754 345789999


Q ss_pred             cCCCEEEEee-cCCcEEEeecC
Q psy3639          93 PDQSTFCSCS-MDHTARIFNTM  113 (113)
Q Consensus        93 ~~~~~~~~~~-~~~~i~~~~~~  113 (113)
                      ++|+++++++ ..+.+.++|.+
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETT
T ss_pred             CCCCEEEEEecCCCceeEeccc
Confidence            9999998775 58899999863

...

>KOG0974|consensus

Probab=99.25  E-value=2.1e-10  Score=76.46  Aligned_cols=104  Identities=23%  Similarity=0.376  Sum_probs=89.3

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce-eeccccc
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYRGHSA   84 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~-~~~~~~~   84 (113)
                      .+++.-++++|+.-+.+.+|..........+.+|.+.+..+.++ .++.++++.+.|.++++|++.+.+.+. ..-+|..
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            35555688889999999999987444444688999999999999 889999999999999999999987665 5567999


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +++.+.|.|.  .++++++|-+.++|+.
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEec
Confidence            9999999987  8999999999999954

>KOG1538|consensus

Probab=99.25  E-value=3.5e-10  Score=73.40  Aligned_cols=109  Identities=19%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee---CCCCeEEEEEEcC----------------------------
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYAVAFSE----------------------------   50 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~----------------------------   50 (113)
                      ++++|..+|++++.|..+|+|.+-|.. +++...++   +..++|.+++|+|                            
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence            467889999999999999999998753 44333333   3566788888876                            


Q ss_pred             -----------------CCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          51 -----------------PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        51 -----------------~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                       ++|+++..|+.|+.+++|- +.+-.+.+.......|+.++..|++.+++.|+.||+|..|++
T Consensus       215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence                             4445555555555555542 334334444445678999999999999999999999988765

>KOG1310|consensus

Probab=99.24  E-value=4.6e-11  Score=75.65  Aligned_cols=81  Identities=22%  Similarity=0.420  Sum_probs=71.6

Q ss_pred             eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-ccccceEEEEEcc--CCCEEEEeecCCcEE
Q psy3639          32 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAEVVGVTFSP--DQSTFCSCSMDHTAR  108 (113)
Q Consensus        32 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~~~i~  108 (113)
                      ..+.+.+|++-|.++.|+ .+|.++++|+.|-.+.+||.-..+.+..+. +|...|.++.|-|  +.+.+++|..|..|+
T Consensus        42 lE~eL~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhhccccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            345778999999999999 999999999999999999998888777765 6888999999998  556788999999999


Q ss_pred             EeecC
Q psy3639         109 IFNTM  113 (113)
Q Consensus       109 ~~~~~  113 (113)
                      +||+.
T Consensus       121 lfdl~  125 (758)
T KOG1310|consen  121 LFDLD  125 (758)
T ss_pred             EEecc
Confidence            99973

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.24  E-value=1.1e-10  Score=49.66  Aligned_cols=39  Identities=36%  Similarity=0.777  Sum_probs=35.9

Q ss_pred             CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639          30 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus        30 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      ++++.++++|..+|.+++|+ +++..+++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence            35778999999999999999 7799999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2139|consensus

Probab=99.24  E-value=5.5e-10  Score=67.71  Aligned_cols=108  Identities=16%  Similarity=0.260  Sum_probs=80.0

Q ss_pred             CcceEcCCC-CEEEeeecCCeEEEeeCCCCe------------eeE--EeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcE
Q psy3639           2 GVPRVTSSP-QRCLTGSYDRTCKLWDIKSGH------------EIC--TYRGHQNVVYAVAFSEPYGDKILTGSF-DKTL   65 (113)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~------------~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v   65 (113)
                      .+.+|-|.+ ..++.|...| |.+|......            +.+  ...+| .+|+++.|+ +++..+++++. +..|
T Consensus       144 tclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi  220 (445)
T KOG2139|consen  144 TCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSI  220 (445)
T ss_pred             eEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceE
Confidence            456777754 4677777755 8899864321            111  22234 689999999 77888887766 5689


Q ss_pred             EEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        66 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+||..++..+.......+.+.-+.|||||.+++.++-|+..++|+.
T Consensus       221 ~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             EEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            99999998766555444567788999999999999999999999953

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=7.3e-10  Score=70.06  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=71.9

Q ss_pred             cceEcCCCCEEEeeecC---CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEE-eCCCcEEEE--eCCccccc
Q psy3639           3 VPRVTSSPQRCLTGSYD---RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLW--ASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~w--d~~~~~~~   76 (113)
                      ..+|+|+++.++..+.+   ..|++||+.+++.... ..........+|+ |+++.++.+ ..+|...+|  |+.+++ .
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~-~  284 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGT-P  284 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCC-e
Confidence            36799999988876543   4699999987754222 2122233468999 778776654 467776655  665554 3


Q ss_pred             eeecccccceEEEEEccCCCEEEEee-cCCcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCS-MDHTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~  112 (113)
                      ..+..+...+....|+|+|+.++..+ .++...+|++
T Consensus       285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            44554555677899999999876554 5677788764

>KOG2139|consensus

Probab=99.23  E-value=5.8e-10  Score=67.59  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             cceEcCCCCEEEeeec-CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           3 VPRVTSSPQRCLTGSY-DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      ..++++++..+++++. |..|.+||..++..+.......+.++-+.|+ |++..+.++.-|+..++|+............
T Consensus       200 smqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-Pdgd~lfaAt~davfrlw~e~q~wt~erw~l  278 (445)
T KOG2139|consen  200 SMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-PDGDVLFAATCDAVFRLWQENQSWTKERWIL  278 (445)
T ss_pred             EEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-CCCCEEEEecccceeeeehhcccceecceec
Confidence            4578889988888765 6779999999887665554456778899999 8899999999999999996654322222222


Q ss_pred             cccceEEEEEccCCCEEEEeecC
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      ..+.|..-.|+|+|++++.+...
T Consensus       279 gsgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  279 GSGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             cCCceeeeeecCCCCEEEEEEcC
Confidence            34589999999999987665443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.22  E-value=1.2e-09  Score=66.88  Aligned_cols=107  Identities=8%  Similarity=0.125  Sum_probs=73.5

Q ss_pred             ceEcCCCCEEEeeec-CCeEEEeeCCCCe----eeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLTGSY-DRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~-d~~v~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      +.++|+++++++++. ++.+.+|++.+..    .+..+. +......++++ ++++.+ ++...++.|.+||+.+...+.
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence            567899998887664 7889999986422    223332 22345678888 566666 555567999999997633221


Q ss_pred             e-----ec-ccccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          78 T-----YR-GHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        78 ~-----~~-~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      .     .. ........+.|+|+|+++++++. ++.|.+|++
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            1     11 12334578999999999988876 899999986

>KOG0650|consensus

Probab=99.20  E-value=4.5e-11  Score=76.12  Aligned_cols=108  Identities=20%  Similarity=0.309  Sum_probs=92.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeec
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYR   80 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~   80 (113)
                      ..+.|+|...++++++. ..|++||+..+..+..+......+..++++ +.|..++.++.|+.+..+|+.-+ +..+++.
T Consensus       570 q~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnli~gs~d~k~~WfDldlsskPyk~lr  647 (733)
T KOG0650|consen  570 QRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNLILGSYDKKMCWFDLDLSSKPYKTLR  647 (733)
T ss_pred             eEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeEEEecCCCeeEEEEcccCcchhHHhh
Confidence            35678999888888886 569999998877777776677789999999 78899999999999999999754 6677888


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .|...+.+++|++.=..|++++.||++.|+.
T Consensus       648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            8889999999999889999999999999884

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.19  E-value=2e-09  Score=65.83  Aligned_cols=108  Identities=10%  Similarity=0.262  Sum_probs=73.3

Q ss_pred             ceEcCCCCEEEeeec-CCeEEEeeCCC--C--eeeEEeeCC------CCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTGSY-DRTCKLWDIKS--G--HEICTYRGH------QNVVYAVAFSEPYGDKILTGSF-DKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~-d~~v~i~~~~~--~--~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~   71 (113)
                      +.++|++++++++.+ ++.|.+|++..  +  +.+..+...      ......+.++ |++++++++.. ++.|.+|++.
T Consensus       180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~-pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT-PDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC-CCCCEEEEecCCCCeEEEEEEe
Confidence            578999998888776 89999999873  2  233333221      1123468888 77888777754 6899999985


Q ss_pred             ccccceeeccc---ccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          72 KEECIQTYRGH---SAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        72 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      .......+..+   ......+.++|+|++++++.. ++.|.+|++
T Consensus       259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            43211111111   224467899999999988776 889999975

>KOG2321|consensus

Probab=99.19  E-value=5.4e-10  Score=71.12  Aligned_cols=101  Identities=14%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc------c--
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG------H--   82 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~------~--   82 (113)
                      .+++.|+ ...|+-+|++.|.-+..+....+.+..+..+ +...++++|+.+|.+..||.+....+..+..      +  
T Consensus       147 Dly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg  224 (703)
T KOG2321|consen  147 DLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG  224 (703)
T ss_pred             cEEEeec-CcceEEEEccccccccccccccccceeeeec-CccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence            3444444 4468888999999998888888899999999 6778899999999999999988765544432      1  


Q ss_pred             ---ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 ---SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                         ...|.++.|+-+|-.+++|+..|.+.|||+|
T Consensus       225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             ccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence               1248999999889999999999999999986

>KOG0771|consensus

Probab=99.18  E-value=1.2e-10  Score=71.10  Aligned_cols=68  Identities=35%  Similarity=0.494  Sum_probs=62.0

Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          44 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..++++ .++..+++++.||++|+|+.++...+.....|...|.++.|+|||.++++.+.| ...||+++
T Consensus       148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence            678888 889999999999999999988888788888899999999999999999999999 99999874

>KOG4547|consensus

Probab=99.14  E-value=2e-09  Score=68.28  Aligned_cols=99  Identities=13%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      .++-|...|.|.+|+...++.-..+.  .|.++|.++.++ .+-.++.+++.|+.+..|+....+.+.........+.++
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            34445555555555555555444443  577888888888 777899999999999999999999888888888889999


Q ss_pred             EEccCCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +++|||..+++++  +.|++||++
T Consensus       151 ~is~D~~~l~~as--~~ik~~~~~  172 (541)
T KOG4547|consen  151 CISPDGKILLTAS--RQIKVLDIE  172 (541)
T ss_pred             EEcCCCCEEEecc--ceEEEEEcc
Confidence            9999999998875  689999874

>KOG2315|consensus

Probab=99.14  E-value=4.2e-09  Score=66.72  Aligned_cols=104  Identities=16%  Similarity=0.384  Sum_probs=79.1

Q ss_pred             cceEcCCCCEEEe--eecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCccccce
Q psy3639           3 VPRVTSSPQRCLT--GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEECIQ   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~--~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~v~~wd~~~~~~~~   77 (113)
                      .+.|++++.-+++  |---.++.+||++ +.++..+  -.++-.++-|+ |.|++++.++.   .|.+-+||..+.+++.
T Consensus       275 dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~  350 (566)
T KOG2315|consen  275 DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVPNRKLIA  350 (566)
T ss_pred             EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC-CCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence            4678898875543  4446778899986 6655555  44566788899 77888877666   4789999999988888


Q ss_pred             eecccccceEEEEEccCCCEEEEeec------CCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM------DHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~  112 (113)
                      .+......  -+.|+|||+++++++.      |+.++||+.
T Consensus       351 ~~~a~~tt--~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  351 KFKAANTT--VFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             ccccCCce--EEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            88765443  3799999999998866      688999975

>KOG1517|consensus

Probab=99.10  E-value=3.6e-09  Score=71.63  Aligned_cols=102  Identities=19%  Similarity=0.329  Sum_probs=80.1

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCe---eeEEeeCCCCe--EEEEEEcCCCCC-EEEEEeCCCcEEEEeCCcccc--ceeec
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGH---EICTYRGHQNV--VYAVAFSEPYGD-KILTGSFDKTLKLWASAKEEC--IQTYR   80 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~-~~~~~~~~~~v~~wd~~~~~~--~~~~~   80 (113)
                      .++.++.|-.||.+++||.+...   .+...+.|...  |..+.+. +.|. .+++|+.+|.|++||++....  ..+..
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq-~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ-RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee-cCCCcceeeeccCCeEEEEecccCcccccceee
Confidence            47899999999999999986543   46677778776  9999998 4444 599999999999999987422  22222


Q ss_pred             cc---ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GH---SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~---~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+   ++...++..++....+++|+. +.|+||++
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence            22   234889999999999999988 99999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.5e-08  Score=64.24  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=73.7

Q ss_pred             cceEcCCCCEEEeeec---CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCCc--EEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLTGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKT--LKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~--v~~wd~~~~~~~   76 (113)
                      ..+|+|+++.++..+.   +..|++||+.+++.. .+..+...+...+|+ |++..+ ++.+.++.  |.+||+.+++. 
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~-  282 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTT-  282 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCCCEEEEEEecCCCceEEEEECCCCce-
Confidence            3578999998877653   467999999877653 344456667788999 667655 46666655  66778877653 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec-CC--cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM-DH--TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~  112 (113)
                      ..+..+........|+|+|+.++..+. ++  .|+++|+
T Consensus       283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        283 TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            444444445567899999998877654 33  5666664

>KOG4497|consensus

Probab=99.08  E-value=4.7e-10  Score=67.39  Aligned_cols=108  Identities=9%  Similarity=0.102  Sum_probs=83.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .++|+|+|+++++.+.- .+.+-|..+-+..+.+. --..|.-+.|.......+.....++.|.+|++...+...++...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            57899999999999876 67788877665444333 34556778887444456777888999999999988877778777


Q ss_pred             ccceEEEEEccCCCEE-EEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTF-CSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~  112 (113)
                      ..++..++|||+|+.+ .+...+-.|.+|.+
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEe
Confidence            7889999999999765 45666889999976

>KOG4547|consensus

Probab=99.06  E-value=6.9e-09  Score=65.90  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=84.5

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      +.+-..+.+++.|..+..|+..++.....++.....+..++.+ +++..+++++  +.|++||+.+++.+..+.+|.++|
T Consensus       111 ~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is-~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  111 AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS-PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPV  187 (541)
T ss_pred             ccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc-CCCCEEEecc--ceEEEEEccCceEEEEecCCCcce
Confidence            4445578899999999999999999999998888999999999 7788888776  689999999999999999999999


Q ss_pred             EEEEEccC-----CCEEEEe-ecCCcEEEe
Q psy3639          87 VGVTFSPD-----QSTFCSC-SMDHTARIF  110 (113)
Q Consensus        87 ~~~~~~~~-----~~~~~~~-~~~~~i~~~  110 (113)
                      .+++|..+     |.+++++ ..+.-+.+|
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             EEEEEEEeccccccceeeeccccccceeEE
Confidence            99999876     6666554 334455555

>KOG4227|consensus

Probab=99.05  E-value=8.5e-09  Score=63.51  Aligned_cols=109  Identities=12%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC--CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-c--cee
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG--HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-C--IQT   78 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~--~~~   78 (113)
                      .+|+.....+.+|+.+++|...|+++.+.+.++..  ..+.|..+..+ |..+.+++.+.++.|.+||.+..+ .  +..
T Consensus       111 L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  111 LEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceee
Confidence            45566667899999999999999999888877752  23479999999 557889999999999999998764 2  222


Q ss_pred             ecccccceEEEEEcc-CCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.......+.+.|+| ...++++.+..+.+-+||.+
T Consensus       190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             ecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence            333445678899999 56778899999999999975

>KOG1240|consensus

Probab=99.05  E-value=2.5e-09  Score=73.07  Aligned_cols=87  Identities=24%  Similarity=0.389  Sum_probs=71.1

Q ss_pred             eeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-------ccceeecccccceEEEEEccCCCE
Q psy3639          25 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-------ECIQTYRGHSAEVVGVTFSPDQST   97 (113)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~   97 (113)
                      |+.+ |..+..+..|...+..++.+++.+.++++|+.||+|++||.+..       +...++...+.++..+...+.++.
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            5543 77888888899999999999787799999999999999998643       222334434567888999999999


Q ss_pred             EEEeecCCcEEEeec
Q psy3639          98 FCSCSMDHTARIFNT  112 (113)
Q Consensus        98 ~~~~~~~~~i~~~~~  112 (113)
                      +++++.||.|.+.++
T Consensus      1113 ~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRI 1127 (1431)
T ss_pred             EEEEcCCCeEEEEEc
Confidence            999999999999876

>KOG1524|consensus

Probab=99.05  E-value=3.8e-09  Score=67.14  Aligned_cols=106  Identities=13%  Similarity=0.232  Sum_probs=78.5

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-   79 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-   79 (113)
                      +.|++|.|+.+.++.+.. +.+.+=.+.....+-..+.|.+-|.++.|+ +...++++|++|-..++||.... .++.- 
T Consensus       148 v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIWDAQGA-NLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEeecccCc-ccccCC
Confidence            357889998876665543 457777777677777888999999999999 77899999999999999994211 11111 


Q ss_pred             ----------------------------cccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          80 ----------------------------RGHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        80 ----------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                                                  +...+.|.+++||+||..+++|+..|.+.+
T Consensus       225 ~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  225 AEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             hhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence                                        123467788888888888888887776643

>KOG3914|consensus

Probab=99.04  E-value=1.2e-09  Score=66.51  Aligned_cols=75  Identities=24%  Similarity=0.356  Sum_probs=62.7

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      -++++|++++++++..|..|++-.......+..+ -||+..|..+++- + +..+++++.|+++++||+.+++.+.++
T Consensus       156 dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  156 DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-D-NYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-c-CceeeecCCCCcEEEEecccCCccccc
Confidence            3578999999999999999999887655555544 4699999999986 3 566899999999999999999877655

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.04  E-value=1e-07  Score=59.43  Aligned_cols=107  Identities=15%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCcEEEEeCCccccceeeccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      ..++|+++++++++.|+.|.++|+.+.+.+.++.. ......++++ ++++++++++ ..+.+.++|.++.+.+..+...
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            35789999999999999999999999999999884 4456889999 7888877655 6889999999998887766532


Q ss_pred             -------ccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          83 -------SAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        83 -------~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                             +.++..+.-+|....+++.-. .+.|.+.|.
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence                   345677777887775555544 467766663

...

>KOG4714|consensus

Probab=99.03  E-value=4.7e-10  Score=65.36  Aligned_cols=72  Identities=21%  Similarity=0.374  Sum_probs=63.0

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-cceeecccccceEEEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..+.+++-+|...+.++.|+.+|.+-+||.+... ....++.|+.+++.+-|+| ++..|+++++||.+.-||.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            3488999998888889999999999999998874 4456778999999999999 8889999999999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.01  E-value=1.5e-08  Score=64.70  Aligned_cols=71  Identities=20%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          39 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        39 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ....+.+.+++ +....++.|+.||.|.+||...+.....  ...-....++|+|+|..+++++..|.+.+||+
T Consensus       258 L~s~v~~ca~s-p~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  258 LPSQVICCARS-PSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             cCCcceEEecC-cccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            66788999999 7789999999999999999877643332  22334578999999999999999999999996

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=4.6e-08  Score=62.06  Aligned_cols=105  Identities=15%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             cceEcCCCCEEEeee---cCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEE-EeCCC--cEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLTGS---YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT-GSFDK--TLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~--~v~~wd~~~~~~~   76 (113)
                      ..+|+|+|+.++..+   .+..+.+|++.+++.... ...........|+ |+++.++. ...+|  .|.+||+.+++..
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            467999999887543   245688999987754332 2233334568899 67776654 44455  4888899877643


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecC-CcEEEe
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMD-HTARIF  110 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~  110 (113)
                       .+......+....|+|+|+.++..+.+ +...+|
T Consensus       281 -~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        281 -QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             -EccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence             333334456788999999988766653 444444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.6e-08  Score=63.10  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             cceEcCCCCEEEeeec---CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCcEEEEe--CCccccc
Q psy3639           3 VPRVTSSPQRCLTGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA--SAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~wd--~~~~~~~   76 (113)
                      ..+|+|+++.++..+.   ...|.+||+.+++... +...........|+ |++..++ +.+.++...+|.  ...+. .
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~  276 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-L  276 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-c
Confidence            4579999998886654   2458999998876543 33234456688999 6776664 667788766665  44333 4


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec-CCcEEEee
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIFN  111 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~  111 (113)
                      ..+..+........|+|||+.++..+. ++...+|.
T Consensus       277 ~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        277 RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            444434444566789999998876554 45555654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.4e-08  Score=64.35  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             cceEcCCCCEEEee-ecCCeEEEe--eCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCcEEEEeCCcc-ccce
Q psy3639           3 VPRVTSSPQRCLTG-SYDRTCKLW--DIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE-ECIQ   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~~-~~d~~v~i~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~wd~~~~-~~~~   77 (113)
                      ..+|+|+++.++.+ +.++.+.+|  |..++. ...+..+...+....|+ +++..++ +...++..++|++... ....
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~  329 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGAS  329 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            35799999988765 457765555  665554 34455566677889999 6777655 4456788888876432 1122


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+ .+..  ...+|+|+|+.++..+.++ +.+||+
T Consensus       330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl  360 (429)
T PRK01742        330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDL  360 (429)
T ss_pred             Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence            22 2222  3467888888887776654 444665

>KOG4714|consensus

Probab=98.98  E-value=2.7e-09  Score=62.32  Aligned_cols=107  Identities=14%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             cceEcCCC-CEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc------
Q psy3639           3 VPRVTSSP-QRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE------   74 (113)
Q Consensus         3 ~~~~~~~~-~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~------   74 (113)
                      +.|-+|.. +.+++|++||.+.+||.+... +...++.|+.++..+-|+|.++..+.++++||.+-.||..+..      
T Consensus       184 ~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~  263 (319)
T KOG4714|consen  184 ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQ  263 (319)
T ss_pred             hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCc
Confidence            44556655 577789999999999998764 3445677999999999999999999999999999999975321      


Q ss_pred             -----------ccee-------ecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          75 -----------CIQT-------YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        75 -----------~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                                 ....       +......|++  |.-.|..+++|+.-+.|++.+
T Consensus       264 ~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  264 ASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence                       0111       0001112332  333677899999889998875

>KOG3881|consensus

Probab=98.97  E-value=1.8e-08  Score=61.55  Aligned_cols=105  Identities=13%  Similarity=0.224  Sum_probs=81.9

Q ss_pred             CCCEEEeeecC--CeEEEeeCCCCeeeEEeeCC---------CCeEEEEEEcCCC-CCEEEEEeCCCcEEEEeCCcc-cc
Q psy3639           9 SPQRCLTGSYD--RTCKLWDIKSGHEICTYRGH---------QNVVYAVAFSEPY-GDKILTGSFDKTLKLWASAKE-EC   75 (113)
Q Consensus         9 ~~~~~~~~~~d--~~v~i~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~-~~~~~~~~~~~~v~~wd~~~~-~~   75 (113)
                      ...++++|+..  ..+.+||+...+.++.-+.-         .-.++++.|-|+. ...|++++.-+.+++||.+.+ ++
T Consensus       160 ~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP  239 (412)
T KOG3881|consen  160 DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP  239 (412)
T ss_pred             CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence            34577789988  78999999877554433211         1234677777331 678999999999999999876 56


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.++...+.++.++...|.+++++++...+.+..||++
T Consensus       240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  240 VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence            77777778899999999999999999999999999975

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=7.3e-08  Score=61.22  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=70.5

Q ss_pred             ceEcCCCCEEEeeec---CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCC--cEEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLTGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDK--TLKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~--~v~~wd~~~~~~~~   77 (113)
                      .+|+|+++.++..+.   ...+++||+.+++... +..........+|+ ++++.+ ++.+.+|  .|.+||+.+++. .
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~  285 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSRQL-T  285 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECCCCCe-E
Confidence            578999998887653   3469999998776533 33334445678999 667655 4555555  588899987763 3


Q ss_pred             eecccccceEEEEEccCCCEEEEeec-CCc--EEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM-DHT--ARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--i~~~~~  112 (113)
                      .+..+.......+|+|+|+.++..+. ++.  ++++|+
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            44434444567899999998877654 444  555553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=1.3e-07  Score=60.07  Aligned_cols=106  Identities=10%  Similarity=0.025  Sum_probs=68.6

Q ss_pred             ceEcCCCCEEEee-ecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEE--eCCccccce
Q psy3639           4 PRVTSSPQRCLTG-SYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLW--ASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~w--d~~~~~~~~   77 (113)
                      ..|+|+++.++.. +.++  .|++||+.+++.... ..+...+....|+ |+++.++..+. ++...+|  |+.+++. .
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~  324 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVNINGGAP-Q  324 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEEEECCCCCe-E
Confidence            5799999977754 4344  588899987765443 3344567889999 77877665554 4554555  6655542 3


Q ss_pred             eecccccceEEEEEccCCCEEEEeecC---CcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMD---HTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~  112 (113)
                      .+...........|+|+|++++..+.+   ..+.+||+
T Consensus       325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence            333333345568899999998776543   34777775

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.94  E-value=1.3e-07  Score=59.60  Aligned_cols=106  Identities=17%  Similarity=0.171  Sum_probs=69.0

Q ss_pred             ceEcCCCCEEEeeecC---CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCC--cEEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLTGSYD---RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDK--TLKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~--~v~~wd~~~~~~~~   77 (113)
                      .+|+|+++.++.....   ..|++|++.+++.... ..+.......+|+ +++..++ +.+.++  .+.+||+.+++. .
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~~~~~-~  271 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLDGKQL-T  271 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECCCCCE-E
Confidence            4689999988876543   4799999988754432 3345556678899 6676554 555444  588888877643 3


Q ss_pred             eecccccceEEEEEccCCCEEEEeec-CC--cEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM-DH--TARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~  112 (113)
                      .+..+........|+|+|+.++..+. ++  .|+++|+
T Consensus       272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            33333333446789999998876554 33  4666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2695|consensus

Probab=98.90  E-value=1.7e-08  Score=61.13  Aligned_cols=107  Identities=15%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCC-----eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc---ce
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---IQ   77 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~---~~   77 (113)
                      |...++++..|..+|.|..+|++.+     .+.+.+. |...++++..---.++.+++.+.+|+|.+||++--++   +.
T Consensus       260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~  338 (425)
T KOG2695|consen  260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM  338 (425)
T ss_pred             hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence            4556789999999999999999865     3455555 8888998887633678899999999999999987766   78


Q ss_pred             eecccccceEE--EEEccCCCEEEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVG--VTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++.+|.....-  +-..+....++++++|=-.+||.++
T Consensus       339 qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  339 QYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             eeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            88877432221  2234556677788899999999764

>KOG3621|consensus

Probab=98.90  E-value=2.3e-08  Score=65.11  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=82.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce----
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ----   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~----   77 (113)
                      ..|++.++++++.|+..|.+++|+-..++....-. +....+....++ +...+++.|+..|.|.++.+....+-.    
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            45788899999999999999999987776543333 233445555566 778899999999999999876643211    


Q ss_pred             -ee-cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 -TY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 -~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                       .. +.|...|.++.|++++..+.+|...|+|..-.+
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence             11 235678999999999999999999999987644

>KOG3914|consensus

Probab=98.89  E-value=1.7e-08  Score=61.74  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=62.9

Q ss_pred             EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        35 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+-+|-.-+++++++ ++++.++++..|+.|++-.......+.++- +|+.-|..++.-+ +..|++++.|+++++||++
T Consensus       146 ~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecc
Confidence            344688889999999 888999999999999997766554455443 5888899998865 4568999999999999974

>KOG1963|consensus

Probab=98.89  E-value=1e-07  Score=63.13  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=86.9

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      +.+..|+++|.++++|+..+.+.+|.+.+++ .+-+..-.+++..+.++ +++...+....|+.|.+-...+.....+..
T Consensus       254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIs  331 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTIS  331 (792)
T ss_pred             cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence            3567899999999999999999999999988 33444477899999999 888888889999999998776654433332


Q ss_pred             cc-----------ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GH-----------SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~-----------~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.           .+-...++++|..+.++-.+..+++.+||+
T Consensus       332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            21           223467888997777888888999999986

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.89  E-value=6.3e-07  Score=53.08  Aligned_cols=30  Identities=13%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|..+..||+|..|++.+.+|.|.+|++
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            457899999999999999999999999986

>KOG1334|consensus

Probab=98.89  E-value=7.9e-09  Score=64.79  Aligned_cols=111  Identities=22%  Similarity=0.349  Sum_probs=87.6

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCC--C----------eee-EEeeCCCC--eEEEEEEcCCCCCEEEEEeCCCcE
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKS--G----------HEI-CTYRGHQN--VVYAVAFSEPYGDKILTGSFDKTL   65 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~--~----------~~~-~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~v   65 (113)
                      |++.+++.++.-++++-.|..|++++..-  +          ..+ ..+++|..  .|..+-|--|...++++|+.-|.|
T Consensus       339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI  418 (559)
T KOG1334|consen  339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI  418 (559)
T ss_pred             ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence            45667786666556555677788886432  2          112 23778754  477787766778999999999999


Q ss_pred             EEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        66 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+|+-.+++.+.-+.+...-|+++.-+|.--.|++++.|..|+||-
T Consensus       419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence            9999999999999998878899999999888999999999999995

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=2.5e-07  Score=58.82  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=68.9

Q ss_pred             cceEcCCCCEEE-eeecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCc--EEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCL-TGSYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKT--LKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~-~~~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~--v~~wd~~~~~~~   76 (113)
                      ..+|+|+++.++ +.+.++  .|++||+.+++.. .+..+.......+|+ ++++.++..+ .+|.  +.++|+.+++. 
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~g~~-  328 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASGGSA-  328 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence            357999998765 444444  5899999877643 344454455678999 6777766554 4454  55566665542 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCC---cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDH---TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~  112 (113)
                      ..+..........+|+|+|+.++..+.++   .|.+||+
T Consensus       329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence            22222223344689999999988765433   5888886

>KOG2041|consensus

Probab=98.88  E-value=2.6e-08  Score=65.55  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=86.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCC---------------eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEE
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG---------------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK   66 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~   66 (113)
                      .|+.|+....++++|+.||.+++-.+.+.               ..-+++++|...|.-+.|+ .+.+.+-+...+|.|.
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSGLII   96 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCceEE
Confidence            56788888999999999999999876542               1235778999999999999 7788889999999999


Q ss_pred             EEeCCccccceeec--ccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          67 LWASAKEECIQTYR--GHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        67 ~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                      +|-+-.+.....+.  ..++.|.+++|+.+|..++....||.|.+
T Consensus        97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            99887765554433  34567889999999999998888887754

>KOG1064|consensus

Probab=98.85  E-value=4e-08  Score=69.83  Aligned_cols=106  Identities=20%  Similarity=0.348  Sum_probs=84.4

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC-CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-----cc-----
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-----EC-----   75 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-----~~-----   75 (113)
                      +|...++++|+.||.+++|....+..+..++. ....++.+.|+ .+|+.+..+..||.+.+|.....     ++     
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-HQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKAL 2295 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-ccCCceeeeccCCceeecccCCcceeccccCCccc
Confidence            56677999999999999999887777766653 33778899999 88999999999999999975311     00     


Q ss_pred             ---------------------------------ceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          76 ---------------------------------IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        76 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                                                       -.....|.+.+..+++.|....+++|+.+|.+++||++
T Consensus      2296 ~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2296 SDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             cceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence                                             00013577888999999999999999999999999975

>KOG1275|consensus

Probab=98.85  E-value=6.3e-08  Score=64.94  Aligned_cols=103  Identities=13%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---------CCcEEEEeCCccccc
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---------DKTLKLWASAKEECI   76 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~v~~wd~~~~~~~   76 (113)
                      +-.+++.+.+|...|+|.+-|..+.+.++++..|.+.+.++...   |+.+++++.         |..|++||++..+.+
T Consensus       183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            44567889999999999999999999999999999999998876   888888876         445889997654321


Q ss_pred             eee----------------------------------------------cccccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          77 QTY----------------------------------------------RGHSAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        77 ~~~----------------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      ..+                                              ......+..++++++|+.++.+..+|.|.+|
T Consensus       260 ~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~w  339 (1118)
T KOG1275|consen  260 SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLW  339 (1118)
T ss_pred             CCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeee
Confidence            111                                              1123347888999999999999999999999


Q ss_pred             e
Q psy3639         111 N  111 (113)
Q Consensus       111 ~  111 (113)
                      .
T Consensus       340 a  340 (1118)
T KOG1275|consen  340 A  340 (1118)
T ss_pred             c
Confidence            5

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=5.9e-07  Score=57.41  Aligned_cols=107  Identities=18%  Similarity=0.108  Sum_probs=67.3

Q ss_pred             cceEcCCCCEEEeeec-C--CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCc--EEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLTGSY-D--RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKT--LKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~--v~~wd~~~~~~~   76 (113)
                      ...|+|+++.++..+. +  ..|+++|+.+++... +...........|+ |+++.++ +.+.++.  |.++|+.+++. 
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~-  298 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKAL-  298 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence            4579999998876543 3  358888988776432 22223334567899 6677554 5666665  77778877653 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec-CC--cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM-DH--TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~  112 (113)
                      ..+..+........|+|+|+.++..+. ++  .|+++|+
T Consensus       299 ~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        299 TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            333334444567899999998876554 33  3555453

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=5.3e-07  Score=57.25  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             ceEcCCCCEEEeeecC---CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCC--cEEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLTGSYD---RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDK--TLKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~--~v~~wd~~~~~~~~   77 (113)
                      ..|+|+++.++..+.+   ..|.+|++.+++... +...........|+ |+++.++ +...+|  .|.++|+.+++. .
T Consensus       204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~-~  280 (430)
T PRK00178        204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQL-S  280 (430)
T ss_pred             eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCe-E
Confidence            4789999988765433   468889998776433 22233445578899 6777655 555555  577789887653 3


Q ss_pred             eecccccceEEEEEccCCCEEEEeec-CC--cEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM-DH--TARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~  112 (113)
                      .+..+........|+|+|+.++..+. ++  .|+++|+
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~  318 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV  318 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34334444556789999998766553 33  4555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.2e-07  Score=58.96  Aligned_cols=107  Identities=13%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             cceEcCCCCEEE-eeecCCeEEEee--CCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCcEEEEeC--Cccccc
Q psy3639           3 VPRVTSSPQRCL-TGSYDRTCKLWD--IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWAS--AKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~-~~~~d~~v~i~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~wd~--~~~~~~   76 (113)
                      ...|+|+++.++ +.+.++...+|.  ...+. ...+..+........|+ ++++.++..+ .++...+|.+  ..++ .
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~~~~g~-~  320 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMPASGGA-A  320 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEECCCCc-e
Confidence            457999998776 566677666665  44333 44454455555677899 6787666444 4566666654  3333 2


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCC---cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDH---TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~  112 (113)
                      ..+..........+|+|+|++++..+.++   .|.+||+
T Consensus       321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            22221223334578999999988766544   5888886

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=9.5e-07  Score=56.27  Aligned_cols=107  Identities=13%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             cceEcCCCCEEE-eeecCCe--EEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCC--cEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCL-TGSYDRT--CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDK--TLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~-~~~~d~~--v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--~v~~wd~~~~~~~   76 (113)
                      ..+|+|+++.++ +.+.++.  |+++|+.+++. ..+..+........|+ ++++.++..+ .+|  .|.++|+..++. 
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~~d~~g~~~-  326 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYVMNADGSNP-  326 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEEEECCCCCe-
Confidence            357899998765 4555544  77778876654 3444455556778999 6777766554 333  577778766543 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecC---CcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMD---HTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~  112 (113)
                      ..+...........|+|+|+.++....+   ..|.++|+
T Consensus       327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            3333234445668899999998876543   35666664

>KOG0644|consensus

Probab=98.81  E-value=1.9e-08  Score=66.88  Aligned_cols=101  Identities=18%  Similarity=0.284  Sum_probs=84.9

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTF   91 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~   91 (113)
                      +.+++-.+..+++|++.++...+.+.+|...+..+.++|-+.....+++.||...+||+-.+.+++.+......+..-+|
T Consensus       367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kF  446 (1113)
T KOG0644|consen  367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKF  446 (1113)
T ss_pred             cceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecccc
Confidence            34444456677899999999999999999999999999888888899999999999999888776666544567778899


Q ss_pred             ccCCCEEEEeecCCcEEEeec
Q psy3639          92 SPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        92 ~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      |++|..++.....|.++|...
T Consensus       447 Sqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  447 SQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             CCCCceEecCCCCCceEEecc
Confidence            999999999888899988753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=1.1e-06  Score=55.74  Aligned_cols=106  Identities=13%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             eEcCCCCEEEeeecCC-eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           5 RVTSSPQRCLTGSYDR-TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+..+++-++.|..|| .+-+||..+++ +..+...-+.|.++..+ ++|..++.+.....+.+.|+.+++....-+...
T Consensus       366 r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~idkS~~  443 (668)
T COG4946         366 RIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY  443 (668)
T ss_pred             EEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEeccccc
Confidence            4455666788888888 88999988655 44666677889999999 889999999999999999999997544444456


Q ss_pred             cceEEEEEccCCCEEEEeec----CCcEEEeec
Q psy3639          84 AEVVGVTFSPDQSTFCSCSM----DHTARIFNT  112 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~  112 (113)
                      +-|..+.|+|++++++=+--    -..|+++|+
T Consensus       444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             ceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            67899999999999875533    357888876

>KOG4532|consensus

Probab=98.79  E-value=1.1e-06  Score=51.94  Aligned_cols=111  Identities=11%  Similarity=-0.025  Sum_probs=78.3

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe--eeE-EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc--
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH--EIC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI--   76 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~--   76 (113)
                      +-+++++++++.++.++...|..|.++...  .+. ........-.+..|+ .+...++++..||++.+||++.....  
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecCCcEEEEEecccccchh
Confidence            346789999999999999999999886543  233 223344455778888 77889999999999999999875322  


Q ss_pred             ---eeecccccceEEEEEccCCC--EEEEeecCCcEEEeecC
Q psy3639          77 ---QTYRGHSAEVVGVTFSPDQS--TFCSCSMDHTARIFNTM  113 (113)
Q Consensus        77 ---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~  113 (113)
                         .+...|++.+..+.|++-|.  .|+..-.-+.+++.|+|
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence               23344788899999998543  33333334567777664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.78  E-value=1.1e-06  Score=55.42  Aligned_cols=107  Identities=12%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             cceEcCCCCEEEe-eecC--CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CC--cEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLT-GSYD--RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DK--TLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~-~~~d--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~--~v~~wd~~~~~~~   76 (113)
                      ..+|+|+++.++. .+.+  ..|++|++.++... .+..+........|+ +++..++..+. .+  .|.++|+.+++. 
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~d~~~~~~-  314 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMMDADGGEV-  314 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            3578999986664 4443  35888898866543 333344444567888 67777665443 33  477778776553 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCC---cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDH---TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~i~~~~~  112 (113)
                      ..+...........|+|+|++++..+.++   .|.++|+
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~  353 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL  353 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence            33333445566789999999998877765   6777775

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.77  E-value=7.8e-08  Score=61.54  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=55.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA   71 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~   71 (113)
                      .+++.+|+.+.++.|+.||.|.+||...+....+  ...-..+.++|+ |++..+++|+..|.+.+||+.
T Consensus       263 ~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  263 ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             eEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence            4678899999999999999999999876543322  244557899999 889999999999999999963

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=1.1e-06  Score=61.29  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeC---------------------CCCeEEEEEEcCCCCCEEEEEeC
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRG---------------------HQNVVYAVAFSEPYGDKILTGSF   61 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~~   61 (113)
                      ++++|+++ ++++-..++.|++||+.++.......+                     .......+++. +++..+++-..
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~  823 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSY  823 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECC
Confidence            56788887 556667779999999887653211100                     01123578888 67888888888


Q ss_pred             CCcEEEEeCCccccceeec-------------ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          62 DKTLKLWASAKEECIQTYR-------------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        62 ~~~v~~wd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++.|++||..++.......             +.-.....++++++|+.+++-+.++.|++||++
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            9999999987765332111             111245789999999988888889999999973

>KOG1645|consensus

Probab=98.75  E-value=5.9e-08  Score=59.79  Aligned_cols=91  Identities=9%  Similarity=0.112  Sum_probs=72.8

Q ss_pred             EEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCC-CEEEE
Q psy3639          22 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQ-STFCS  100 (113)
Q Consensus        22 v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~  100 (113)
                      +++.+..+-+..+.+.++...|.+++++|.+..++..++.+++|.+.|+++...+.++..+ ..+++.+|+-+. +++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            4455544455555556678889999999666557888999999999999999988888876 788999998754 56778


Q ss_pred             eecCCcEEEeecC
Q psy3639         101 CSMDHTARIFNTM  113 (113)
Q Consensus       101 ~~~~~~i~~~~~~  113 (113)
                      |...|.|.+||+|
T Consensus       254 Gl~nG~VlvyD~R  266 (463)
T KOG1645|consen  254 GLQNGMVLVYDMR  266 (463)
T ss_pred             eccCceEEEEEcc
Confidence            8889999999986

>KOG1409|consensus

Probab=98.74  E-value=7e-08  Score=58.46  Aligned_cols=68  Identities=16%  Similarity=0.383  Sum_probs=55.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      .+.+|.+...++.++..|..+.+||+.-.+ ......+|...|..+..- +..+.+.+++.||.|.+||.
T Consensus       201 ~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  201 TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             EEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEec
Confidence            345788888999999999999999986543 345667888888888766 55688899999999999985

>KOG1354|consensus

Probab=98.74  E-value=5.6e-08  Score=58.99  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEE---eeCC-----CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICT---YRGH-----QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~---~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      -+.++.+.+.++++. |-.|.+|+++-....+.   ++.+     +.-|++..|+|...+.++..+..|+|++.|++...
T Consensus       169 SIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  169 SISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            345677778888775 67899999864433222   2222     34578899998888999999999999999998532


Q ss_pred             ------cceeec----------ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 ------CIQTYR----------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 ------~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                            .+....          +.-..|..+.|+++|+++++-+. -++++||+
T Consensus       248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~  300 (433)
T KOG1354|consen  248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDL  300 (433)
T ss_pred             hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEec
Confidence                  111111          12346788999999999887653 58999997

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.72  E-value=1.7e-06  Score=55.08  Aligned_cols=107  Identities=14%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             ceEcCCCCEEEeee-cCCeEEEe--eCCC-CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-C--CcEEEEeCCccccc
Q psy3639           4 PRVTSSPQRCLTGS-YDRTCKLW--DIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-D--KTLKLWASAKEECI   76 (113)
Q Consensus         4 ~~~~~~~~~~~~~~-~d~~v~i~--~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~--~~v~~wd~~~~~~~   76 (113)
                      .+|+|+|+.++..+ .++...+|  ++.. +.....+......+....|+ |+++.++.... +  ..|.+||+.+++..
T Consensus       286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence            47899999777544 45654555  4432 22334444444556788999 77877765543 2  36889999887643


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec---CCcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM---DHTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~  112 (113)
                       .+......+....|+|+|+.++....   ...+.++|+
T Consensus       365 -~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        365 -QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             -EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence             33322334567899999998875433   345777765

>KOG1409|consensus

Probab=98.69  E-value=3e-07  Score=55.82  Aligned_cols=82  Identities=20%  Similarity=0.436  Sum_probs=69.6

Q ss_pred             eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-cceeecccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          31 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        31 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                      .++.++.+|...+.+++|. +....+.++..|..+.+||+.-.+ ....+.+|...|..+.+-+--+.+++++.||.|.+
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             ceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            4567788999999999999 778899999999999999986543 24566678888888888887888999999999999


Q ss_pred             eecC
Q psy3639         110 FNTM  113 (113)
Q Consensus       110 ~~~~  113 (113)
                      |+++
T Consensus       267 w~mn  270 (404)
T KOG1409|consen  267 WNMN  270 (404)
T ss_pred             Eecc
Confidence            9974

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=1.9e-06  Score=54.86  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             ceEcCCCCEEEeeec-----CCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEE-eCCCcEEEE--eCCc
Q psy3639           4 PRVTSSPQRCLTGSY-----DRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLW--ASAK   72 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~-----d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~w--d~~~   72 (113)
                      .+|+|+|+.++..+.     +..+..|++..+   +................|+ |++..++.. ..+|...+|  ++..
T Consensus       236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~  314 (428)
T PRK01029        236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDP  314 (428)
T ss_pred             eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcc
Confidence            478999987775442     223344676542   3233333222334567899 778766544 456655555  4432


Q ss_pred             -cccceeecccccceEEEEEccCCCEEEEeecC---CcEEEeec
Q psy3639          73 -EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMD---HTARIFNT  112 (113)
Q Consensus        73 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~  112 (113)
                       +.....+......+....|+|+|+.++....+   ..|.+||+
T Consensus       315 ~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl  358 (428)
T PRK01029        315 EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL  358 (428)
T ss_pred             cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence             22233343334456678999999988766543   36888876

>KOG3617|consensus

Probab=98.65  E-value=9.9e-08  Score=64.02  Aligned_cols=108  Identities=10%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             CcceEcCCCCEEEeeec----CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           2 GVPRVTSSPQRCLTGSY----DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      .+..|+|...++++++.    .|.|.||- ++|++-.... ..-.+++++|+ |....++.|-.-|.+.+|...+.+.-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWH-PEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccC-hHHHHHhhccccceeEEEecCCceeee
Confidence            35678999998887764    47777774 4565433222 23345679999 667788899999999999987777656


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ....|..++..+.||++|..++++..-|.+++|..
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            66678889999999999999999999999999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=6.3e-06  Score=52.43  Aligned_cols=107  Identities=10%  Similarity=-0.014  Sum_probs=66.1

Q ss_pred             cceEcCCCCEEE-eeecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCC--cEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCL-TGSYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDK--TLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~-~~~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~--~v~~wd~~~~~~~   76 (113)
                      ..+|+|+++.++ +...++  .|+++|+.+++.. .+..+........|+ +++..++..+ .++  .|.++|+.+++. 
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~-  323 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRA-  323 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            357999999776 444444  5788898876643 344444455677899 6677655444 344  466677766653 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecC-C--cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMD-H--TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~--~i~~~~~  112 (113)
                      ..+...........|+|+|+.++....+ +  .|.++|+
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence            2222122233457899999998776543 3  4666765

>KOG1334|consensus

Probab=98.61  E-value=2.6e-07  Score=58.24  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=86.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCccc---cce
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEE---CIQ   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~wd~~~~~---~~~   77 (113)
                      -+.|+..|..+++++.|..|.+||...++....+ .+|...|...+|-|..+ ..+++.+.||.+++=.+....   ...
T Consensus       147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~  226 (559)
T KOG1334|consen  147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK  226 (559)
T ss_pred             eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence            3557778999999999999999999888776665 46888888888875443 568899999999987664432   234


Q ss_pred             eecccccceEEEEEccC-CCEEEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVGVTFSPD-QSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+..|.++++.++.-|+ ...|.+++.|+.+.-+|++
T Consensus       227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             ecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            45568889999999884 4568899999998887764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.59  E-value=1.2e-05  Score=49.94  Aligned_cols=102  Identities=11%  Similarity=0.016  Sum_probs=73.3

Q ss_pred             CCCEEEeeecC-----CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC----------CCcEEEEeCCcc
Q psy3639           9 SPQRCLTGSYD-----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF----------DKTLKLWASAKE   73 (113)
Q Consensus         9 ~~~~~~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~v~~wd~~~~   73 (113)
                      +++.+++....     +.|.+.|..+.+.+.++..-..+-. + ++ ++++.++.+..          +..|.+||..+.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-V-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-e-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            45555554443     7899999999999888875444433 4 78 66666655544          789999999999


Q ss_pred             ccceeecccc-------cceEEEEEccCCCEEEEeec--CCcEEEeecC
Q psy3639          74 ECIQTYRGHS-------AEVVGVTFSPDQSTFCSCSM--DHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~--~~~i~~~~~~  113 (113)
                      +.+..+....       .....++++|+|+++++...  ++.+.+.|+.
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~  136 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE  136 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence            8887766321       12347899999999988763  6789888863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532|consensus

Probab=98.58  E-value=4.2e-06  Score=49.63  Aligned_cols=101  Identities=16%  Similarity=0.073  Sum_probs=70.2

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-cc-ceee-cccccceEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-EC-IQTY-RGHSAEVVG   88 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~-~~~~-~~~~~~v~~   88 (113)
                      .+..++.|.++++.++.-+..-.......-.+..+..+ +++.++++.+....|..|.+... +. +... ...+..-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            35566677777777776443322222122237788888 88999999999999999988654 22 2212 222334467


Q ss_pred             EEEccCCCEEEEeecCCcEEEeecC
Q psy3639          89 VTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|+.....++++..||.+.|||+|
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEec
Confidence            8999988999999999999999986

>KOG2314|consensus

Probab=98.57  E-value=1.3e-06  Score=56.20  Aligned_cols=106  Identities=20%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-----------CCcEEEEeC
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-----------DKTLKLWAS   70 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~v~~wd~   70 (113)
                      +.+.|+|.|.+|++-...| |.+|=-..-..++.+. |.+ |..+.|+ |+..+|++-+.           ...+++||+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecC-CccceEEEecCCccccCcccCCCceEEEEEc
Confidence            3578999999999999877 6789655555555655 654 7889999 77888887543           246999999


Q ss_pred             Cccccceeecccc--cceE-EEEEccCCCEEEEeecCCcEEEeec
Q psy3639          71 AKEECIQTYRGHS--AEVV-GVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        71 ~~~~~~~~~~~~~--~~v~-~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .+|.....+....  ...+ -+.||.|+.+++.-.. +.|.|++.
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEt  333 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYET  333 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEec
Confidence            9998887776532  2222 4789999999876655 56777764

>KOG4640|consensus

Probab=98.54  E-value=9.2e-07  Score=57.39  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=71.2

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEE-EEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY-AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-   80 (113)
                      ...|+|...++|++..+|.+.+.... ...+.++..+..+++ +++|. ++|+.++.|-.||+|++.|...+..+..+. 
T Consensus        25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~  102 (665)
T KOG4640|consen   25 RIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGRLVSFLF  102 (665)
T ss_pred             EEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCceecccc
Confidence            34688999999999999999998877 677778887777777 99999 789999999999999999999887766632 


Q ss_pred             ccccceEEEEEc
Q psy3639          81 GHSAEVVGVTFS   92 (113)
Q Consensus        81 ~~~~~v~~~~~~   92 (113)
                      .....+..+-|+
T Consensus       103 s~e~~is~~~w~  114 (665)
T KOG4640|consen  103 SVETDISKGIWD  114 (665)
T ss_pred             ccccchheeecc
Confidence            134456666665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=1.5e-05  Score=51.09  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             ceEcCCCCEEEe-eecCCe--EEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCc--EEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLT-GSYDRT--CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKT--LKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~--v~~wd~~~~~~~~   77 (113)
                      ..|+|+++.++. .+.++.  |+++|+.+++.. .+..+........|+ +++..++..+ .++.  +.++|+.+++.. 
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-  343 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVS-  343 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEE-
Confidence            478999997764 555664  777788766543 344344556778899 6677665444 3444  555677666532 


Q ss_pred             eecccccceEEEEEccCCCEEEEeec-CCcEEE
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARI  109 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~  109 (113)
                      .+..........+|+|+|++++..+. ++...+
T Consensus       344 ~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I  376 (448)
T PRK04792        344 RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNI  376 (448)
T ss_pred             EEecCCCCCcCeeECCCCCEEEEEEecCCceEE
Confidence            22212222345689999998877654 343333

>KOG4640|consensus

Probab=98.51  E-value=1.1e-06  Score=56.98  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceE-EEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          40 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVV-GVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...+..+.|+ |.-.++|.+..+|.+.+..+. .+.+.++..++..+. +++|.|||+.+++|-.||+|++.|++
T Consensus        20 ~~~i~~~ewn-P~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   20 PINIKRIEWN-PKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             ccceEEEEEc-CccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            4457889999 667899999999999998877 777888886666666 99999999999999999999999874

>KOG1064|consensus

Probab=98.51  E-value=4e-07  Score=65.10  Aligned_cols=65  Identities=14%  Similarity=0.298  Sum_probs=56.0

Q ss_pred             eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .-|...++++++. |..+.+++|+.+|.|++||++..+..+.++.         +. ...++++++..|.++||++
T Consensus      2333 ~~H~~gaT~l~~~-P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYA-PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             eecCCCceEEEEc-CcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence            4578889999999 7789999999999999999999887777764         44 4678999999999999986

>KOG2066|consensus

Probab=98.51  E-value=4.4e-06  Score=55.68  Aligned_cols=100  Identities=11%  Similarity=0.139  Sum_probs=74.1

Q ss_pred             CCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCC----CCCEEEEEeCCCcEEEEeCCcc-ccc-eeecc
Q psy3639           8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP----YGDKILTGSFDKTLKLWASAKE-ECI-QTYRG   81 (113)
Q Consensus         8 ~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~v~~wd~~~~-~~~-~~~~~   81 (113)
                      ..|+++++++.||+|.|..+.+.+...++. ...++..++++|.    ....+++|+..| +.++.-.-. ... ..+..
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence            368899999999999999988888776666 6678999999953    245789999988 777653221 111 13455


Q ss_pred             cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..++|.++.|  .|++++.++.+ .++++|+
T Consensus       159 ~eG~I~~i~W--~g~lIAWand~-Gv~vyd~  186 (846)
T KOG2066|consen  159 GEGPIHSIKW--RGNLIAWANDD-GVKVYDT  186 (846)
T ss_pred             CccceEEEEe--cCcEEEEecCC-CcEEEec
Confidence            6789999999  58888887655 4677775

>KOG1275|consensus

Probab=98.50  E-value=2.5e-06  Score=57.72  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG   88 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~   88 (113)
                      ++..++.|+....+..+|+.+.+..+...-....+.-++   .+++.+.+|...|+|.+-|..+.+.++++..|.+.+..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            456677777777788899988877666654444555555   44789999999999999999999999999999999875


Q ss_pred             EEEccCCCEEEEeec---------CCcEEEeecC
Q psy3639          89 VTFSPDQSTFCSCSM---------DHTARIFNTM  113 (113)
Q Consensus        89 ~~~~~~~~~~~~~~~---------~~~i~~~~~~  113 (113)
                      +  +-.|+.|++++.         |.-++|||+|
T Consensus       223 f--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  223 F--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             e--eccCCeEEEeecccccccccccchhhhhhhh
Confidence            5  457999998876         4567888875

>KOG4190|consensus

Probab=98.50  E-value=6.8e-07  Score=57.76  Aligned_cols=63  Identities=27%  Similarity=0.439  Sum_probs=48.0

Q ss_pred             CCCEEEeeecCCeEEEeeCCC-------CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKS-------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      +.+.+++++.|++|++|.++.       ..+..++..|+.+|.++-|- .+.+.++  +-||-+++||.--++
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~--ScD~giHlWDPFigr  815 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIA--SCDGGIHLWDPFIGR  815 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceee--eccCcceeecccccc
Confidence            556799999999999999853       23667888899999999887 5555554  456789999864443

>KOG4497|consensus

Probab=98.47  E-value=1e-05  Score=49.37  Aligned_cols=97  Identities=20%  Similarity=0.331  Sum_probs=71.5

Q ss_pred             eEcCCCCEEE-eeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCC-CEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           5 RVTSSPQRCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         5 ~~~~~~~~~~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .|..+..+++ ....++.|.+|++...+=-..++....++..++|+ |+| ..+.+...+-.|.+|.+.+.+.... +..
T Consensus        55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~-~~p  132 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLL-PHP  132 (447)
T ss_pred             eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEe-ccc
Confidence            3555555555 45668899999998776666677778889999999 556 6677888899999999887664332 223


Q ss_pred             ccceEEEEEccCCCEEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      +..+..++|+|+|++.+..+.
T Consensus       133 K~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             ccCceeEEECCCCceeeeeec
Confidence            445678999999998776543

>smart00320 WD40 WD40 repeats

Probab=98.47  E-value=8.7e-07  Score=36.23  Aligned_cols=37  Identities=35%  Similarity=0.625  Sum_probs=31.5

Q ss_pred             cceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ....+..+...+.++.|++.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455556777899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.47  E-value=6.7e-07  Score=53.99  Aligned_cols=108  Identities=15%  Similarity=0.198  Sum_probs=75.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeee---EEeeCC-----CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEI---CTYRGH-----QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-   74 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-   74 (113)
                      +.++.+.+.++++. |-.|.+|++......   ..++.|     ..-|++..|+|.....+...+..|.|++-|++... 
T Consensus       178 iS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         178 ISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             eeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            34556666677664 678999998654322   233333     34578889998888889999999999999998532 


Q ss_pred             -----cceee----------cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          75 -----CIQTY----------RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 -----~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                           .+...          .+....|..+.|+++|+++++-+. -++++||++
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecc
Confidence                 11111          122356788999999998877654 689999974

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.45  E-value=4.3e-05  Score=47.47  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             ceEcCCCCEEEee-ecCCeEEEeeCC--CCe--eeEEeeCC------CCeEEEEEEcCCCCCEEEEEe-CCCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTG-SYDRTCKLWDIK--SGH--EICTYRGH------QNVVYAVAFSEPYGDKILTGS-FDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~-~~d~~v~i~~~~--~~~--~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~~~v~~wd~~   71 (113)
                      ..|+|+++++++. -.++.|.++++.  ++.  .++.+...      ......++++ +++++++.+. ..+.|.+|++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEEEEEEEe
Confidence            4689999876654 447789999887  442  22333211      2257889999 7788776655 46789999983


Q ss_pred             c--cc--cceeecccccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          72 K--EE--CIQTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        72 ~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      .  ++  .+............+.++|+|++|+++.. ++.|.+|++
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            2  22  23333333445688999999999988875 568888864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.44  E-value=2.5e-05  Score=40.51  Aligned_cols=96  Identities=9%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             eEcCCC-CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           5 RVTSSP-QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         5 ~~~~~~-~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+.-++ +.|++|++|..|++|+-  .+.+..+. ....+..+.-. . +..++.+..+|+|-+|+-  .+.+...+...
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~-~-~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~   81 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSL-G-GGRFAYALANGTVGVYDR--SQRLWRIKSKN   81 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEc-C-CCEEEEEecCCEEEEEeC--cceeeeeccCC
Confidence            334444 48999999999999984  35666766 44556666654 2 477999999999999975  33345555444


Q ss_pred             cceEEEEE-ccCC--C-EEEEeecCCcEE
Q psy3639          84 AEVVGVTF-SPDQ--S-TFCSCSMDHTAR  108 (113)
Q Consensus        84 ~~v~~~~~-~~~~--~-~~~~~~~~~~i~  108 (113)
                      . +.++.+ ..++  . -|++|-.+|.|-
T Consensus        82 ~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   82 Q-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             C-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4 444443 3333  2 478888888774

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.41  E-value=1e-05  Score=51.50  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=72.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCC----cEEEEeCCccccceee
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK----TLKLWASAKEECIQTY   79 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~v~~wd~~~~~~~~~~   79 (113)
                      +.++++|+.++.+.....+.+.|++++.....=+...+.|+.+.|+ +++++++.+--+|    .|+++|+..++. ...
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYafP~gy~tq~Iklydm~~~Ki-y~v  484 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAFPEGYYTQSIKLYDMDGGKI-YDV  484 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEecCcceeeeeEEEEecCCCeE-EEe
Confidence            5678999999999999999999999887654445567789999999 8888888765554    589999988763 333


Q ss_pred             cccccceEEEEEccCCCEEEE
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCS  100 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~  100 (113)
                      ......-.+-+|.|++++|.-
T Consensus       485 TT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         485 TTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             cCCcccccCcccCCCCcEEEE
Confidence            333444466788889987643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.41  E-value=1.1e-05  Score=50.57  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCC-eEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVV   87 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~   87 (113)
                      .+..++.++.++.+..+|..+++.+........ .......   .+..++.++.+|.+.++|..+++.+..++.+...+.
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~  354 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA  354 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc
Confidence            455666777788888888888876655422111 1122222   256788899999999999999998887775543332


Q ss_pred             E-EEEccCCCEEEEeecCCcEEEe
Q psy3639          88 G-VTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        88 ~-~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      . ..+  -++.+++++.||.|+.|
T Consensus       355 ~sp~~--~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       355 SPPVV--VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             cCCEE--ECCEEEEEeCCceEEEe
Confidence            2 122  23458889999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=98.40  E-value=3.3e-06  Score=34.37  Aligned_cols=38  Identities=42%  Similarity=0.638  Sum_probs=31.9

Q ss_pred             eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639          31 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus        31 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      +....+..|...+.++.+. +.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence            4455666788899999999 5668999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.39  E-value=6e-05  Score=46.92  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=68.8

Q ss_pred             CCCEEEeeecCCeEEEeeCCCC-----eeeEEeeC-------CCCeEEEEEEcCCCCCEEEEEe----------CCCcEE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSG-----HEICTYRG-------HQNVVYAVAFSEPYGDKILTGS----------FDKTLK   66 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~----------~~~~v~   66 (113)
                      ++.++.+..+ |.|.+.|+...     +.+..+..       ......-++++ +++..++...          ..+.|.
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-RARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-CCCCEEEEEecCCccccccCCCCEEE
Confidence            6777777666 99999995432     22222211       11223348899 5555555432          124799


Q ss_pred             EEeCCccccceeecccccceEEEEEccCCC-EEEEee-cCCcEEEeec
Q psy3639          67 LWASAKEECIQTYRGHSAEVVGVTFSPDQS-TFCSCS-MDHTARIFNT  112 (113)
Q Consensus        67 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~  112 (113)
                      ++|..+.+.+..+.. ...+..++++|+++ ++++.+ .++.|.++|+
T Consensus       283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            999999998887773 45789999999999 887766 5788999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190|consensus

Probab=98.38  E-value=3.3e-07  Score=59.13  Aligned_cols=77  Identities=29%  Similarity=0.601  Sum_probs=62.9

Q ss_pred             eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc-------cccceeecccccceEEEEEccCCCEEEEeecCC
Q psy3639          33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-------EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDH  105 (113)
Q Consensus        33 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  105 (113)
                      +..+.+|+..|..+.-- .+.+-+++++.|.+|++|.++.       ..+..++..|+.+|.++.|-.+.++++++  |+
T Consensus       728 L~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            45667888888888766 6778899999999999998754       34678889999999999998887766554  78


Q ss_pred             cEEEeec
Q psy3639         106 TARIFNT  112 (113)
Q Consensus       106 ~i~~~~~  112 (113)
                      .|++||-
T Consensus       805 giHlWDP  811 (1034)
T KOG4190|consen  805 GIHLWDP  811 (1034)
T ss_pred             cceeecc
Confidence            9999984

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.34  E-value=6.8e-05  Score=52.81  Aligned_cols=107  Identities=10%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             ceEcC-CCCEEEeeecCCeEEEeeCCCCeeeEEeeC---------------CCCeEEEEEEcCCCCC-EEEEEeCCCcEE
Q psy3639           4 PRVTS-SPQRCLTGSYDRTCKLWDIKSGHEICTYRG---------------HQNVVYAVAFSEPYGD-KILTGSFDKTLK   66 (113)
Q Consensus         4 ~~~~~-~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-~~~~~~~~~~v~   66 (113)
                      ++++| ++.++++...++.|++||..++... .+.+               .......++++ +++. ++++-..++.|+
T Consensus       688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIR  765 (1057)
T ss_pred             EEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEE
Confidence            46777 5567777777889999998766432 2211               11234578898 5555 566666778999


Q ss_pred             EEeCCcccccee-------------ecc--------cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          67 LWASAKEECIQT-------------YRG--------HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        67 ~wd~~~~~~~~~-------------~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +||+.++.....             +..        .......++++++|+.+++-..++.|++||.
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence            999876532110             000        0112357899999998888888999999986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.33  E-value=0.00016  Score=45.02  Aligned_cols=109  Identities=12%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             cceEcCCCCEEEeeec----CCeEEEeeCCCC--e--eeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCcEEEEeCCc-
Q psy3639           3 VPRVTSSPQRCLTGSY----DRTCKLWDIKSG--H--EICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK-   72 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~----d~~v~i~~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~wd~~~-   72 (113)
                      ..+++|++++|++..+    ++.|..|.+...  .  .+..........+.++++ +++.+++++. .+|.+.++++.. 
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCC
Confidence            4577889998888766    568888887653  3  333333344556789998 6677777666 588999999876 


Q ss_pred             cccce---eec----------ccccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          73 EECIQ---TYR----------GHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        73 ~~~~~---~~~----------~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      +....   ...          ......+.+.++|+|+++++... ...|.+|++
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            32211   111          11245688999999998887654 356777765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00019  Score=45.88  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             ceEcCCCCE-EEeeec---CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCC--CcEEEEeCCccccc
Q psy3639           4 PRVTSSPQR-CLTGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFD--KTLKLWASAKEECI   76 (113)
Q Consensus         4 ~~~~~~~~~-~~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~--~~v~~wd~~~~~~~   76 (113)
                      ..|+|+++. ++..+.   +..|.++|+.+++...... .........|+ |++..+ ++.+.+  ..|.++|+..++ .
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~~g~-~  269 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTNTKT-L  269 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECCCCc-E
Confidence            578999984 554333   3568889998876554433 44555667899 667654 444444  457777877665 3


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec-CC--cEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM-DH--TARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~i~~~~~  112 (113)
                      ..+...........|+|||+.++..+. .+  .|.+.|+
T Consensus       270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence            333322222334689999998766553 33  4554443

>KOG1912|consensus

Probab=98.28  E-value=1.7e-05  Score=53.25  Aligned_cols=106  Identities=18%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCC-----------CCCEEEEEeCCCcEEEEeCCcc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP-----------YGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .|+|+| +++.|+. ..|.+-|..+-+.++.+..|...|+.+.|.|.           ....++++...|.|.+||....
T Consensus        22 Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   22 DWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             ccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            344444 3555554 46889999989999999999999999999862           2235778888999999999988


Q ss_pred             ccceeecccccceEEEEEcc---CC-CEEEEeecCCcEEEeec
Q psy3639          74 ECIQTYRGHSAEVVGVTFSP---DQ-STFCSCSMDHTARIFNT  112 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~i~~~~~  112 (113)
                      ..+..+..+..++..++|-+   +. ..+++-+....+.+|+.
T Consensus       100 s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt  142 (1062)
T KOG1912|consen  100 SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT  142 (1062)
T ss_pred             hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence            87788887888888999866   33 46677777888999864

>KOG1354|consensus

Probab=98.26  E-value=3.5e-05  Score=47.33  Aligned_cols=111  Identities=18%  Similarity=0.316  Sum_probs=74.6

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCe-----eeEEeeCC------------CCeEEEEEEcCCCC-CEEEEEeCCC
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGH-----EICTYRGH------------QNVVYAVAFSEPYG-DKILTGSFDK   63 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~-~~~~~~~~~~   63 (113)
                      .++.+...|++|++|..+|.|.+|.-....     ....++.|            ...|..+.|.++.+ ..+.....|.
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk  108 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK  108 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence            456788899999999999999998743222     11222223            35678899984433 3566777889


Q ss_pred             cEEEEeCCcccc--------------------cee---------------e-cccccceEEEEEccCCCEEEEeecCCcE
Q psy3639          64 TLKLWASAKEEC--------------------IQT---------------Y-RGHSAEVVGVTFSPDQSTFCSCSMDHTA  107 (113)
Q Consensus        64 ~v~~wd~~~~~~--------------------~~~---------------~-~~~~~~v~~~~~~~~~~~~~~~~~~~~i  107 (113)
                      ++++|.+.....                    +..               + .+|.--+++++++.|+.+++++. |=.|
T Consensus       109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRI  187 (433)
T KOG1354|consen  109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRI  187 (433)
T ss_pred             ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceee
Confidence            999997643210                    000               0 13555678899999999888774 6678


Q ss_pred             EEeecC
Q psy3639         108 RIFNTM  113 (113)
Q Consensus       108 ~~~~~~  113 (113)
                      .+|+++
T Consensus       188 NLWnle  193 (433)
T KOG1354|consen  188 NLWNLE  193 (433)
T ss_pred             eecccc
Confidence            888763

>KOG1912|consensus

Probab=98.26  E-value=2e-05  Score=52.91  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCC--C-CEEEEEeCCCcEEEEeCCccccceeecccccceEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--G-DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG   88 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~   88 (113)
                      +++++...|.|.+||...+.....+..+..++.++.|-+..  . ..++.-....++.+|+..+|+.+..+........+
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~  160 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC  160 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence            67788889999999999988888888889999999986422  2 45666777789999999999999988877777888


Q ss_pred             EEEcc-CCCEEEEeecCCcEEEe
Q psy3639          89 VTFSP-DQSTFCSCSMDHTARIF  110 (113)
Q Consensus        89 ~~~~~-~~~~~~~~~~~~~i~~~  110 (113)
                      +.+.| +.+.+..-+..|.+-+-
T Consensus       161 f~~DPfd~rh~~~l~s~g~vl~~  183 (1062)
T KOG1912|consen  161 FRVDPFDSRHFCVLGSKGFVLSC  183 (1062)
T ss_pred             eeeCCCCcceEEEEccCceEEEE
Confidence            99998 77778777777766554

>KOG2444|consensus

Probab=98.23  E-value=9.6e-06  Score=46.96  Aligned_cols=103  Identities=9%  Similarity=0.046  Sum_probs=69.1

Q ss_pred             CCEEEeeecCCeEEEeeCCC-CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc-cceE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-AEVV   87 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~-~~v~   87 (113)
                      +.-+++|+.+|.|++|+... +.....+......+.++.-.-..+.+.+++..+|.++.|++...+.+.....|+ .+..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            45688999999999998752 222222222334444443332445588899999999999998888776666665 4555


Q ss_pred             EEEEccCCCEEEEe--ecCCcEEEeec
Q psy3639          88 GVTFSPDQSTFCSC--SMDHTARIFNT  112 (113)
Q Consensus        88 ~~~~~~~~~~~~~~--~~~~~i~~~~~  112 (113)
                      ....+..++.+..+  +.+..++.|++
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcch
Confidence            55555566777666  77888888876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.22  E-value=0.0001  Score=46.23  Aligned_cols=99  Identities=9%  Similarity=0.053  Sum_probs=66.3

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG   88 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~   88 (113)
                      .+..+++++.++.+.-+|..+++.+...............   .+..++.++.++.+..+|..+++.+............
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence            3567788888899999999999988776543322222222   2567778888999999999999877666533221111


Q ss_pred             EEEccCCCEEEEeecCCcEEEeec
Q psy3639          89 VTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...  .+..++.++.++.++.+|.
T Consensus       141 p~v--~~~~v~v~~~~g~l~a~d~  162 (377)
T TIGR03300       141 PLV--ANGLVVVRTNDGRLTALDA  162 (377)
T ss_pred             CEE--ECCEEEEECCCCeEEEEEc
Confidence            111  3456677777888888875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.22  E-value=4.5e-05  Score=52.94  Aligned_cols=105  Identities=10%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             ceEcCCCCEEEeeec------CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCccc
Q psy3639           4 PRVTSSPQRCLTGSY------DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEE   74 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~v~~wd~~~~~   74 (113)
                      ++|-.||+++++.+.      -+.+++|+-+ |....+-+.-.+.-..++|. |.|+++++.-.   ...|.+|.- +|.
T Consensus       215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfEr-NGL  291 (928)
T PF04762_consen  215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFER-NGL  291 (928)
T ss_pred             EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEec-CCc
Confidence            456678889998765      2578999965 66554444444445688999 77888876654   235666653 332


Q ss_pred             ccee----ecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 CIQT----YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 ~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .-..    +......+..+.|++++..|++...|. |.+|-.
T Consensus       292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            2222    223456789999999999999876554 888854

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.20  E-value=0.00028  Score=43.42  Aligned_cols=108  Identities=12%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             cceEcCCCCEEEeeec-CCeEEEeeCCC-Cee---eEEeeCCCCe----------EEEEEEcCCCCCEEEEEeC-CCcEE
Q psy3639           3 VPRVTSSPQRCLTGSY-DRTCKLWDIKS-GHE---ICTYRGHQNV----------VYAVAFSEPYGDKILTGSF-DKTLK   66 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d~~v~i~~~~~-~~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~-~~~v~   66 (113)
                      -+++++++++++++.. .+.|.++.+.+ |..   ++.+. |...          +....+. |+++++++.+. --.|.
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~Dri~  170 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeC-CCCCEEEEeecCCceEE
Confidence            3578899998888776 47788998855 332   22222 4444          7788888 77877776655 34689


Q ss_pred             EEeCCccccceeec---ccccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          67 LWASAKEECIQTYR---GHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        67 ~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      +|++..++....-.   .....-+++.|+|++++..+.++ +++|.+|..
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence            99998765322111   23456689999999998877666 788888864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.14  E-value=0.00011  Score=43.02  Aligned_cols=102  Identities=13%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-cccc---c
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RGHS---A   84 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-~~~~---~   84 (113)
                      .+..+++++.++.+..||..+|+.+..+...........   ..+..++.+..++.+..+|..+++.+... ....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee---ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            566677778899999999999998877764221111112   22456666778889999999999888773 3221   1


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..........+..++++..++.+..+|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  140 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPK  140 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecC
Confidence            11122222347778888888888888753

...

>KOG2066|consensus

Probab=98.13  E-value=2.8e-05  Score=52.12  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=69.5

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      .-.+++++-|+.+|.+++++.. +.+ .+...|...      . ..|.++++++.||++.+-.+-+.+...++. ...++
T Consensus        46 av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpi  115 (846)
T KOG2066|consen   46 AVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPI  115 (846)
T ss_pred             HhhcceeeeccccceEEEEecC-Ccc-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcc
Confidence            4457889999999999999875 333 333334333      3 679999999999999999888877666666 45688


Q ss_pred             EEEEEccC-----CCEEEEeecCCcEEEe
Q psy3639          87 VGVTFSPD-----QSTFCSCSMDHTARIF  110 (113)
Q Consensus        87 ~~~~~~~~-----~~~~~~~~~~~~i~~~  110 (113)
                      .+++++|+     .+.+++|+..| +.++
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEe
Confidence            89999996     55688888877 5544

>KOG0309|consensus

Probab=98.13  E-value=1.9e-05  Score=52.86  Aligned_cols=109  Identities=11%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             eEcCCC--CEEEeeecCCeEEEeeCCCC---eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc-ccee
Q psy3639           5 RVTSSP--QRCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQT   78 (113)
Q Consensus         5 ~~~~~~--~~~~~~~~d~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~-~~~~   78 (113)
                      .|++..  .+-++........+|++...   .....+.+|...++++.|+|.....+++++.|-.+..||+++.. .+..
T Consensus        74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys  153 (1081)
T KOG0309|consen   74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS  153 (1081)
T ss_pred             ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence            445543  23333334444568987543   34567788999999999998888899999999999999998763 4444


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...-...-..++|+...-.+.+.+..+.+.+||++
T Consensus       154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             eecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            44333444668898744445566677889999975

>KOG2695|consensus

Probab=98.11  E-value=2.1e-05  Score=48.20  Aligned_cols=83  Identities=18%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCee---eEEeeCCCCeEEEEE--EcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHE---ICTYRGHQNVVYAVA--FSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      +++.+.+++-+|+|++||.+--++   +.++.+|...-.-+.  .. +....+++++.|...++|.++++..+.+++...
T Consensus       310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            567888888899999999976665   888888865433333  34 445567789999999999999998877766432


Q ss_pred             ----cceEEEEEc
Q psy3639          84 ----AEVVGVTFS   92 (113)
Q Consensus        84 ----~~v~~~~~~   92 (113)
                          ..+.++++.
T Consensus       389 s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  389 SASEVDIPSVAFD  401 (425)
T ss_pred             ccccccccceehh
Confidence                234556664

>KOG2079|consensus

Probab=98.11  E-value=2e-05  Score=54.32  Aligned_cols=96  Identities=19%  Similarity=0.247  Sum_probs=69.1

Q ss_pred             CCEEEeeecCCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc---
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---   85 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~---   85 (113)
                      +-.++.|+..|.+...|.... .+...-+.-..+|++++++ .+|..++.|-.+|.|.+||...++.++.+..+..+   
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            345677777777777776542 1112222346789999999 99999999999999999999998888777655443   


Q ss_pred             eEEEEEccCCCEEEEeecCCc
Q psy3639          86 VVGVTFSPDQSTFCSCSMDHT  106 (113)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~~~  106 (113)
                      +..+.+..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            444555556667888877776

>KOG0309|consensus

Probab=98.11  E-value=6.9e-06  Score=54.80  Aligned_cols=102  Identities=21%  Similarity=0.330  Sum_probs=77.0

Q ss_pred             CCEEEeeecCCeEEEeeCCCCe-eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeecccccceE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSAEVV   87 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~~~~~~v~   87 (113)
                      +..+++++-|..+..||+++.. ++..+.........++|+-.++..++ .+..+.|++||.+.+ ..+..++++...++
T Consensus       127 pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  127 PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVN  205 (1081)
T ss_pred             CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeee
Confidence            3578899999999999998654 45555555556688999855555554 445567999999865 67788888888888


Q ss_pred             EEEEcc-CCCEEEEeecCCcEEEeec
Q psy3639          88 GVTFSP-DQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        88 ~~~~~~-~~~~~~~~~~~~~i~~~~~  112 (113)
                      .++|.. .-..+.+++.|+++++||.
T Consensus       206 ~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  206 SIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             hHHHhhhhhhhhcccCCCCceeeecc
Confidence            888875 2234678899999999985

>KOG1832|consensus

Probab=98.08  E-value=5.7e-06  Score=56.33  Aligned_cols=106  Identities=19%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CC-cEEEEeCCc-ccccee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DK-TLKLWASAK-EECIQT   78 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~-~v~~wd~~~-~~~~~~   78 (113)
                      .|++|+-..++++.|+..|.|++|++.+|........|...++.+.-+ .++..+.+.+. .. ...+|+..+ +...++
T Consensus      1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs-~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPLSALWDASSTGGPRHS 1183 (1516)
T ss_pred             eeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccccc-CCcceeeeeccccCchHHHhccccccCcccc
Confidence            477888999999999999999999999999999999999999999988 66766554443 33 467898765 344455


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.+    ..++.|+.....-+.|+......+||+
T Consensus      1184 f~e----d~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1184 FDE----DKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             ccc----cceeehhhhHHHHHhcccccceEEEec
Confidence            543    345677665555556666667777775

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.02  E-value=4.9e-05  Score=48.66  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCC---------------cEEE
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK---------------TLKL   67 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~v~~   67 (113)
                      ..+++|.|.++++....+ |.+|.-.....+..+. | ..|..+.|+ |++.+|.+-+..+               .+.+
T Consensus        37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v  112 (561)
T COG5354          37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFV  112 (561)
T ss_pred             heeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccC-cccceeeeeccCCccChhhccCCccccCceeE
Confidence            457899999999887755 8899877666555554 4 447889999 7788888765533               4899


Q ss_pred             EeCCccccceeecccccc--eE-EEEEccCCCEEEEeecCCcEEEee
Q psy3639          68 WASAKEECIQTYRGHSAE--VV-GVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ||+.++..+..+....++  .+ -++|+.+..+++-. ....+++++
T Consensus       113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e  158 (561)
T COG5354         113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHE  158 (561)
T ss_pred             EeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEe
Confidence            999999998888876655  45 57888877765433 334566665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.0016  Score=41.78  Aligned_cols=97  Identities=11%  Similarity=0.032  Sum_probs=56.8

Q ss_pred             cceEcCCCCEEEe-eec--CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCC--cEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLT-GSY--DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDK--TLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~-~~~--d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~--~v~~wd~~~~~~~   76 (113)
                      ...|+|+++.++. .+.  +..|.++++.+++.. .+..+........|+ |+++.++ +....+  .|.+.|+.+++..
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            3578999986654 333  356778888766533 333333333456799 6676554 443444  4666677766542


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecC
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      .... ...  ....|+|+|+.++.....
T Consensus       315 rlt~-~g~--~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        315 QVVF-HGK--NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             eCcc-CCC--cCceECCCCCEEEEEEcC
Confidence            2221 111  134899999988766543

>KOG4649|consensus

Probab=97.94  E-value=0.00043  Score=41.41  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=59.6

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      +++++.|...|.+++-+..+|+....+... +.|..-+...+++..+..++.|+..+..|.++..++.+.+.......+-
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            667888999999999999999877666532 2333333333678899999999999999999988888776444333334


Q ss_pred             EEcc
Q psy3639          90 TFSP   93 (113)
Q Consensus        90 ~~~~   93 (113)
                      ...|
T Consensus       142 ~i~~  145 (354)
T KOG4649|consen  142 VIAP  145 (354)
T ss_pred             eecC
Confidence            4455

>KOG1645|consensus

Probab=97.93  E-value=9.6e-05  Score=46.21  Aligned_cols=69  Identities=10%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .+++|..+ ++..++.+.+|++.|+++...+..+..+ ..+.+.+|.-.+.+.++.|..+|.|.+||++..
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            46788777 6778899999999999998888888866 778999998556678889999999999998764

>KOG2314|consensus

Probab=97.91  E-value=0.00018  Score=46.85  Aligned_cols=96  Identities=9%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CcceEcCCCCEEEeeec-----------CCeEEEeeCCCCeeeEEeeCC---CCeEEEEEEcCCCCCEEEEEeCCCcEEE
Q psy3639           2 GVPRVTSSPQRCLTGSY-----------DRTCKLWDIKSGHEICTYRGH---QNVVYAVAFSEPYGDKILTGSFDKTLKL   67 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~-----------d~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~v~~   67 (113)
                      ..+.|+|+.++|++-+.           ...++|||+.+|.....+...   ...-.-+.|+ .++.+++--.. ..|.+
T Consensus       253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~sisI  330 (698)
T KOG2314|consen  253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NSISI  330 (698)
T ss_pred             eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ceEEE
Confidence            35678999999987543           256899999999877766542   2223457788 77888776655 57889


Q ss_pred             EeCCccccceeecccccceEEEEEccCCCEEE
Q psy3639          68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFC   99 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   99 (113)
                      |+..+...+-.-...-..|....|+|.++.|+
T Consensus       331 yEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EecCceeeecccccCCccccCcccCCCcceEE
Confidence            98766443322222345678889999877665

>KOG4649|consensus

Probab=97.89  E-value=0.0013  Score=39.40  Aligned_cols=101  Identities=16%  Similarity=0.070  Sum_probs=72.4

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      ..+++.|+..+.+.--|..+|+...+-. -...+.+-++-  -+.+++.|..+|.+++.+.+++.....+...+.-=..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            3477788888988888999888765432 22333333332  26789999999999999999997777665433211234


Q ss_pred             EEccCCCEEEEeecCCcEEEeecC
Q psy3639          90 TFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...+++..+..++.|++.+..|.+
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEeccc
Confidence            557789999999999999988753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.88  E-value=0.00095  Score=42.29  Aligned_cols=97  Identities=11%  Similarity=0.119  Sum_probs=57.3

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeCCC-CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEE-
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG-   88 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~-   88 (113)
                      ..++.++.++.+...|..+++.+....... ........   .+..++.++.+|.+...|..+++.+...+.....+.+ 
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~  371 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE  371 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC
Confidence            344445556666666666665443322111 11111111   1456778899999999999999877776543333322 


Q ss_pred             EEEccCCCEEEEeecCCcEEEeec
Q psy3639          89 VTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..+  .+..+++++.+|.++.+++
T Consensus       372 P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 PVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE--ECCEEEEEeCCceEEEEeC
Confidence            111  3557888999999988764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.86  E-value=0.00013  Score=32.04  Aligned_cols=30  Identities=10%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|..++|+|....++.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356889999999999999999999999976

>KOG2315|consensus

Probab=97.83  E-value=0.0011  Score=43.13  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE--EEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEE
Q psy3639          21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL--TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTF   98 (113)
Q Consensus        21 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   98 (113)
                      ++++.++...+....+. ..++|.++.|+ +.+.-++  .|-.=-.+.++|++-. .+..+.  +++=+++-|+|.|+++
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~--egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLRGK-PVFDFP--EGPRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEEC-CCCCEEEEEEecccceEEEEcCCCC-EeEeCC--CCCccceEECCCCCEE
Confidence            45556655333333333 57899999999 5565443  3444557889987543 344443  4555789999999999


Q ss_pred             EEeecC---CcEEEeec
Q psy3639          99 CSCSMD---HTARIFNT  112 (113)
Q Consensus        99 ~~~~~~---~~i~~~~~  112 (113)
                      +.++.+   |.|-+||+
T Consensus       327 ~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             EEeecCCCCCceEEEec
Confidence            887775   78999996

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.00071  Score=46.32  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             EEEeeecCCeEEEeeCCCCe--eeE-Eee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639          12 RCLTGSYDRTCKLWDIKSGH--EIC-TYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~--~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      .-+.|-.+..+..||.+-..  .+. ..+  .......|++-. . ...++.|+.+|.||+||-...+....+.+.+.+|
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-E-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI  621 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec-C-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence            34556566778899987542  221 111  134456677655 4 4578899999999999965445556667778999


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEee
Q psy3639          87 VGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .++..+.||++++..+.. -+.+.+
T Consensus       622 ~~iDvt~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  622 IGIDVTADGKWILATCKT-YLLLID  645 (794)
T ss_pred             eEEEecCCCcEEEEeecc-eEEEEE
Confidence            999999999998766543 344443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.79  E-value=0.0011  Score=42.81  Aligned_cols=103  Identities=15%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             ceEcCCCCEEEee--ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC---CcEEEEeCCcccc-ce
Q psy3639           4 PRVTSSPQRCLTG--SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD---KTLKLWASAKEEC-IQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~--~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~v~~wd~~~~~~-~~   77 (113)
                      .+|.|.++.+++.  -.+..+.+++++.. ....+.  ...-..+.|+ |..++++.++.+   |.+-+||...... ..
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fs-p~~r~il~agF~nl~gni~i~~~~~rf~~~~  355 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFS-PHERYILFAGFDNLQGNIEIFDPAGRFKVAG  355 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc-eEEecC--Cccccccccc-CcccEEEEecCCccccceEEeccCCceEEEE
Confidence            3677887766654  35677888998755 333333  2233556677 667777776665   5799999876533 33


Q ss_pred             eecccccceEEEEEccCCCEEEEeec------CCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSM------DHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~  112 (113)
                      .+.+.+  ..-+.|+|++.++.+...      |+.+++||+
T Consensus       356 ~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         356 AFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             EeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            555433  234689999999877543      778999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.74  E-value=0.0025  Score=37.79  Aligned_cols=97  Identities=9%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             ceEcCCCCEEE-eeecCCeEEEeeCCCC-e------eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc
Q psy3639           4 PRVTSSPQRCL-TGSYDRTCKLWDIKSG-H------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC   75 (113)
Q Consensus         4 ~~~~~~~~~~~-~~~~d~~v~i~~~~~~-~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~   75 (113)
                      ++++|+++.++ +-+..+.|..|++... .      ....+.......-.+++. .+++++++....+.|.+++.. ++.
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~-G~~  216 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPD-GKL  216 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETT-SCE
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCC-ccE
Confidence            57899998655 5666788888887532 1      111222222347789998 788988888889999999987 877


Q ss_pred             ceeecccccceEEEEE-ccCCCEEEEee
Q psy3639          76 IQTYRGHSAEVVGVTF-SPDQSTFCSCS  102 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~-~~~~~~~~~~~  102 (113)
                      +..+......+.+++| -++.+.|++.+
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            7777766567889999 46666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.73  E-value=0.00034  Score=30.77  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc
Q psy3639          39 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC   75 (113)
Q Consensus        39 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~   75 (113)
                      ....|..++|+ |...+++.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~-P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWC-PTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEEC-CCCCEEEEEECCCeEEEEEC-CCcC
Confidence            34568999999 77889999999999999988 5543

>KOG2114|consensus

Probab=97.72  E-value=0.00099  Score=45.51  Aligned_cols=106  Identities=14%  Similarity=0.210  Sum_probs=71.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe-EEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCcc---
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGDKILTGSFDK-----TLKLWASAKE---   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~-----~v~~wd~~~~---   73 (113)
                      +.++++++..++.|+.+|.|.+.+-. -+.++.++.+... +..+-.. .....+++.+.|+     .+++|++...   
T Consensus        28 isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             eeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            56889999999999999998887742 3444666666555 4444333 4445777766664     4899997543   


Q ss_pred             ---ccc---eee----cccccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          74 ---ECI---QTY----RGHSAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        74 ---~~~---~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                         +++   +.+    .....++..++.+.+-..+++|-.+|.|..+
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~  152 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY  152 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence               222   111    1124567888999888889999999988765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.71  E-value=0.0033  Score=38.52  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=70.8

Q ss_pred             ceEcC-CCCEEEeeecCCe-EEEeeCCCCeeeEEeeCCCCe--EEEEEEcCCCCCEEEEEeC-----CCcEEEEeCC-cc
Q psy3639           4 PRVTS-SPQRCLTGSYDRT-CKLWDIKSGHEICTYRGHQNV--VYAVAFSEPYGDKILTGSF-----DKTLKLWASA-KE   73 (113)
Q Consensus         4 ~~~~~-~~~~~~~~~~d~~-v~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~-----~~~v~~wd~~-~~   73 (113)
                      .+.+| .+..++.+-..|. ..+||..+++..+.+......  --.-.|+ ++++++++.-.     .|.|-+||.. ..
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            35667 4556667766665 458999999888776543222  2245677 88888887654     4789999998 56


Q ss_pred             ccceeecccccceEEEEEccCCCEEEEee
Q psy3639          74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCS  102 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  102 (113)
                      +.+.++..+.-.-..+.+.|+|+.|+++.
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence            77788887776778899999998888764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.71  E-value=0.0034  Score=38.49  Aligned_cols=99  Identities=9%  Similarity=0.089  Sum_probs=69.1

Q ss_pred             eEcCCCCEEEee-----ecCCeEEEeeCC-CCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-------CC--------
Q psy3639           5 RVTSSPQRCLTG-----SYDRTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-------DK--------   63 (113)
Q Consensus         5 ~~~~~~~~~~~~-----~~d~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~--------   63 (113)
                      .|+++|++|++.     ...|.|-+||.. +-+.+.++..+.-.-..+.+. ++++.|+.++.       .|        
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhh
Confidence            689999987764     335889999998 556788888777777888888 77766666543       12        


Q ss_pred             ---cEEEEeCCccccceeec----ccccceEEEEEccCCCEEEEeecC
Q psy3639          64 ---TLKLWASAKEECIQTYR----GHSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        64 ---~v~~wd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                         .+..-|..+++.+.+..    -+...+.++++.++|..++.....
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q  183 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ  183 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence               23344556666555532    255689999999998876665443

>KOG1920|consensus

Probab=97.67  E-value=0.00097  Score=47.05  Aligned_cols=107  Identities=11%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             ceEcCCCCEEEee-----ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCc---
Q psy3639           4 PRVTSSPQRCLTG-----SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAK---   72 (113)
Q Consensus         4 ~~~~~~~~~~~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~v~~wd~~~---   72 (113)
                      ++|--+|+++++.     ...+.+++||.+ +..-.+-......-.+++|- |.|..+++--.   ++.|.++....   
T Consensus       201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~h  278 (1265)
T KOG1920|consen  201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLRH  278 (1265)
T ss_pred             EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCccc
Confidence            4567788888873     323789999976 44332222233344688999 56777766433   45688886432   


Q ss_pred             cccceeecccccceEEEEEccCCCEEEE---eecCCcEEEeec
Q psy3639          73 EECIQTYRGHSAEVVGVTFSPDQSTFCS---CSMDHTARIFNT  112 (113)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~i~~~~~  112 (113)
                      +.....+.....++..++|+.++..|++   ......|++|-+
T Consensus       279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            2323333434455899999999999887   444556999964

>KOG1832|consensus

Probab=97.63  E-value=0.00011  Score=50.49  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCC--cEE
Q psy3639          31 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDH--TAR  108 (113)
Q Consensus        31 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~  108 (113)
                      +.+.++..+....++++|+ ...+.++.|+..|.|++++..+|........|.+.+..+.-+.+|..+++.+.-.  -..
T Consensus      1092 r~w~~frd~~~~fTc~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            4566777788999999999 8889999999999999999999998899999999999999888999887655432  234


Q ss_pred             Eeec
Q psy3639         109 IFNT  112 (113)
Q Consensus       109 ~~~~  112 (113)
                      +|++
T Consensus      1171 LW~~ 1174 (1516)
T KOG1832|consen 1171 LWDA 1174 (1516)
T ss_pred             Hhcc
Confidence            4543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.62  E-value=0.005  Score=41.28  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=35.2

Q ss_pred             CcEEEEeCCc-----cccceeecccccceEEEEEccCCCEEEEeec-CCcEEEeecC
Q psy3639          63 KTLKLWASAK-----EECIQTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~  113 (113)
                      +.|.+.|..+     .+.+..+. -....+.+.++|||+++++++. ++++.+.|++
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            4577777776     23333333 3445688999999999877665 7899999873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.61  E-value=0.0042  Score=36.80  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             eEc-CCCCEEEeeecCCeEEEeeCCCCeeeEEeeC-----CCCeEEEEEEcCCCCCEEEEEeCC--------CcEEEEeC
Q psy3639           5 RVT-SSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEPYGDKILTGSFD--------KTLKLWAS   70 (113)
Q Consensus         5 ~~~-~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~--------~~v~~wd~   70 (113)
                      ++. ++ ..++.+...+ +.++|..+++.......     ......++++. ++|.+.++....        |.+..++.
T Consensus        46 ~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   46 AFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             EEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             EEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC
Confidence            344 44 4445555544 56669888764433322     34567899999 778877776654        44666776


Q ss_pred             CccccceeecccccceEEEEEccCCCEEEE-eecCCcEEEeec
Q psy3639          71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCS-CSMDHTARIFNT  112 (113)
Q Consensus        71 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~  112 (113)
                      . ++. ......-...+.++|+|+++.|++ -+..+.|..+++
T Consensus       123 ~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen  123 D-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             T-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             C-CeE-EEEecCcccccceEECCcchheeecccccceeEEEec
Confidence            6 442 323223445688999999997764 455677777764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.60  E-value=0.0047  Score=43.50  Aligned_cols=106  Identities=14%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             cceEcCCCCEEEeeec---CCeEEEeeCCCCeee--EEee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc
Q psy3639           3 VPRVTSSPQRCLTGSY---DRTCKLWDIKSGHEI--CTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC   75 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~---d~~v~i~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~   75 (113)
                      ..+|-|+|+++++...   ...|.+|.- .|-.-  +.+.  .....+..+.|+ +++..++....|. |.+|-..+...
T Consensus       261 ~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  261 ALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             CccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEE
Confidence            5688999999998765   344555653 23222  2222  356689999999 8899998877655 99998776543


Q ss_pred             ce--eecc-cccceEEEEEcc-CCCEEEEeecCCcEEEee
Q psy3639          76 IQ--TYRG-HSAEVVGVTFSP-DQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        76 ~~--~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~  111 (113)
                      ..  .+.. ....+..+.|+| +...|...+.+|.+..++
T Consensus       338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence            22  2221 223344589999 445577777767766654

>KOG0882|consensus

Probab=97.52  E-value=0.0028  Score=40.64  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             eeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc------cccceee-------
Q psy3639          15 TGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK------EECIQTY-------   79 (113)
Q Consensus        15 ~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~------~~~~~~~-------   79 (113)
                      +.-+++.+.++|-....  ....-.-|..+|..+..+ +.+..+.+....|.|.-|....      .+....+       
T Consensus       117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy  195 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY  195 (558)
T ss_pred             ecccCCCcEEECCcCCcCccceecccccCceEEEEee-ccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence            34557889999965443  233334599999999999 7788899999999999997652      1111112       


Q ss_pred             --cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          80 --RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 --~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                        .-......++.|+|+|..+.+-..|..|++++++
T Consensus       196 ~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  196 GFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             cccccccCccceEEccccCcccccCcccEEEEEEec
Confidence              1223456789999999999999999999998763

>KOG2041|consensus

Probab=97.51  E-value=0.0003  Score=47.42  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=77.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe--eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      .++.|+.+.+.+.++..+|.|.+|=+..++=...+  ...++.|.+++|+ .+|..++....||.|.+=.+... .+.--
T Consensus        75 ~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGN-RIwgK  152 (1189)
T KOG2041|consen   75 MVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGN-RIWGK  152 (1189)
T ss_pred             EEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccc-eecch
Confidence            35567788888999999999999988766422111  2245678999999 89999999999999876544322 22211


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .-......++.|++|.+.++.+-.+|..+++|.
T Consensus       153 eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydn  185 (1189)
T KOG2041|consen  153 ELKGQLLAHVLWSEDLEQALFKKANGETHLYDN  185 (1189)
T ss_pred             hcchheccceeecccHHHHHhhhcCCcEEEecc
Confidence            111233457899999988888888888888874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.48  E-value=0.0016  Score=39.99  Aligned_cols=109  Identities=19%  Similarity=0.355  Sum_probs=69.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCe-----eeEEeeCC------------CCeEEEEEEcCCCC-CEEEEEeCCCc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGH-----EICTYRGH------------QNVVYAVAFSEPYG-DKILTGSFDKT   64 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~-~~~~~~~~~~~   64 (113)
                      .+.+...|.++++|...|.|.+|.-....     -...+++|            ...|..+.|..+.+ ..+...+.|.+
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt  110 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT  110 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence            45567788999999999999998754322     11223333            34577888874433 35666778899


Q ss_pred             EEEEeCCccc-------------------------c--cee---------------e-cccccceEEEEEccCCCEEEEe
Q psy3639          65 LKLWASAKEE-------------------------C--IQT---------------Y-RGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        65 v~~wd~~~~~-------------------------~--~~~---------------~-~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                      |++|.+....                         .  +..               + ..|.-.+.+++++.+..+++++
T Consensus       111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa  190 (460)
T COG5170         111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA  190 (460)
T ss_pred             eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec
Confidence            9999753220                         0  000               0 2244456788888888877766


Q ss_pred             ecCCcEEEeec
Q psy3639         102 SMDHTARIFNT  112 (113)
Q Consensus       102 ~~~~~i~~~~~  112 (113)
                       .|=.|.+|++
T Consensus       191 -DdLrINLWnl  200 (460)
T COG5170         191 -DDLRINLWNL  200 (460)
T ss_pred             -cceeeeeccc
Confidence             4567888875

>KOG2395|consensus

Probab=97.44  E-value=0.0028  Score=41.44  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             EeeecCCeEEEeeCCCCee--eEEeeCC----CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceE
Q psy3639          14 LTGSYDRTCKLWDIKSGHE--ICTYRGH----QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVV   87 (113)
Q Consensus        14 ~~~~~d~~v~i~~~~~~~~--~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~   87 (113)
                      +.|-.+..|+-||++-...  +..-++|    .....|++-.  ...+++.|+.+|.|++||--.......+++...+|.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            3455567788888764322  2222222    2334555543  345788999999999999744445566777889999


Q ss_pred             EEEEccCCCEEEEeecCCcEEEee
Q psy3639          88 GVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ++..+.+|.+++..+. ..+.+-+
T Consensus       476 hVdvtadGKwil~Tc~-tyLlLi~  498 (644)
T KOG2395|consen  476 HVDVTADGKWILATCK-TYLLLID  498 (644)
T ss_pred             eEEeeccCcEEEEecc-cEEEEEE
Confidence            9999999998766553 3444443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.0097  Score=36.96  Aligned_cols=109  Identities=9%  Similarity=0.127  Sum_probs=68.7

Q ss_pred             cceEcCCCCEEEeeec---CCeEEEeeCCC--Ceee--EEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCc-c
Q psy3639           3 VPRVTSSPQRCLTGSY---DRTCKLWDIKS--GHEI--CTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAK-E   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~---d~~v~i~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~-~   73 (113)
                      ..+++++.++|.++.+   ++.|.-|.++.  |+..  ........+-+.++++ ++++++++++. .|.|.++-++. +
T Consensus        44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG  122 (346)
T COG2706          44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADG  122 (346)
T ss_pred             eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCC
Confidence            3578889988877655   46677776654  4432  2222233444889998 77877776655 57899998755 3


Q ss_pred             ccce--eecccccc----------eEEEEEccCCCEEEEeecC-CcEEEeec
Q psy3639          74 ECIQ--TYRGHSAE----------VVGVTFSPDQSTFCSCSMD-HTARIFNT  112 (113)
Q Consensus        74 ~~~~--~~~~~~~~----------v~~~~~~~~~~~~~~~~~~-~~i~~~~~  112 (113)
                      ....  ....|.+.          +....+.|+++++++.+-. ..|.+|++
T Consensus       123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706         123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            2111  11112222          7888999999999887653 35777765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.44  E-value=0.0071  Score=35.38  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe-----------EEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----------VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      .++.++.+..++.+..+|.++|+.+........+           .....+  .++ .++.+..++.+..+|..+++.+.
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~~g~~~~~d~~tg~~~w  197 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI--SDG-RVYVSSGDGRVVAVDLATGEKLW  197 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC--CTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE--ECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence            4677888888899999999999998877653322           122222  234 66667777754444999998655


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...  ...... ...+.+..+++.+.++.+..||++
T Consensus       198 ~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  198 SKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             EEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred             Eec--CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence            333  222222 134577788888899999999974

...

>KOG1008|consensus

Probab=97.44  E-value=5.8e-05  Score=49.77  Aligned_cols=108  Identities=11%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe-CCcc-ccceeec
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA-SAKE-ECIQTYR   80 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd-~~~~-~~~~~~~   80 (113)
                      .+|+..+.+++++|...+.+.++|++..- .......+..+..+...|-.+.++++-. ||.|-+|| .+.- ..+..+.
T Consensus       159 s~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~  236 (783)
T KOG1008|consen  159 SVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL  236 (783)
T ss_pred             ccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh
Confidence            45666677788888888889999887221 1111113344566677754677776655 89999999 4332 2333333


Q ss_pred             ccc----cceEEEEEccCCCE-EEE-eecCCcEEEeec
Q psy3639          81 GHS----AEVVGVTFSPDQST-FCS-CSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~----~~v~~~~~~~~~~~-~~~-~~~~~~i~~~~~  112 (113)
                      ..+    ..+..++|+|...- +++ ....++|+.+|+
T Consensus       237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            222    24889999994432 333 344577888875

>KOG1008|consensus

Probab=97.42  E-value=3e-05  Score=51.06  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             CEEEeeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeC----CCcEEEEeCCcc--ccc--eeec
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSF----DKTLKLWASAKE--ECI--QTYR   80 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~v~~wd~~~~--~~~--~~~~   80 (113)
                      .+++.|..+|.|.+-..+...  .-....++..++++++|++-+.+.+++|-.    |-.+.+||+.+.  .+.  ..+.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            478889899999887765432  123445688899999999777777777744    456999999876  111  1122


Q ss_pred             c-cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 G-HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      + ......+++|-.+.+.+.+|...+.++++|+|
T Consensus       151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR  184 (783)
T ss_pred             cccccCccccccccCcchhhcccccchhhhhhhh
Confidence            2 23345578888888888888888899999875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.41  E-value=0.011  Score=37.55  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=61.4

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCC--e--------E-EEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQN--V--------V-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~--~--------v-~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      .+..+++.+.++.+.-+|.++|+.+...+....  .        + .....   .+..++.++.++.+..+|..+++.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence            355677777788999999999988776643220  0        0 01111   24566777888999999999998877


Q ss_pred             eecccccceEE-EEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVG-VTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +..... .+.+ ...  .+..++++..++.+.-+|.
T Consensus       145 ~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~  177 (394)
T PRK11138        145 QTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNE  177 (394)
T ss_pred             cccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEc
Confidence            765432 2211 111  2345666666777777664

>KOG0882|consensus

Probab=97.41  E-value=0.0032  Score=40.38  Aligned_cols=107  Identities=8%  Similarity=-0.025  Sum_probs=71.7

Q ss_pred             eEcCCCCEEEeeec-CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCC----CEEEEEeCCCcEEEEeCCccc--cce
Q psy3639           5 RVTSSPQRCLTGSY-DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG----DKILTGSFDKTLKLWASAKEE--CIQ   77 (113)
Q Consensus         5 ~~~~~~~~~~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~v~~wd~~~~~--~~~   77 (113)
                      +.+.++.++.+.+. |..++++|+.....+..++-- ..-..+.|....+    ...++.-.++.+.++|-....  ...
T Consensus        60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~  138 (558)
T KOG0882|consen   60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY  138 (558)
T ss_pred             hccccceeEeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence            45667788888777 999999998766544333211 1112222321223    233445557899999976543  233


Q ss_pred             eecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .-.-|.++|..+.++|.+..+++....|.|..|..
T Consensus       139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~  173 (558)
T KOG0882|consen  139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA  173 (558)
T ss_pred             ecccccCceEEEEeeccccceeeccccceeEeecC
Confidence            33457889999999999999999999999999965

>KOG3617|consensus

Probab=97.41  E-value=0.0011  Score=45.72  Aligned_cols=67  Identities=10%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~   71 (113)
                      .||+|..-.++.|-+-|.+.+|...+.+.-.....|+.++..+.|+ ++|..++++..-|.+.+|...
T Consensus        65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence            4677777778888888999999987666555556799999999999 889999999999999999653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.34  E-value=0.015  Score=37.10  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=62.3

Q ss_pred             cceEcCCCCEEEee-ecC----CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCC-----------cEE
Q psy3639           3 VPRVTSSPQRCLTG-SYD----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK-----------TLK   66 (113)
Q Consensus         3 ~~~~~~~~~~~~~~-~~d----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------~v~   66 (113)
                      ...++|++++++.+ +..    ..++++|+++++.+...-.... ...+.|. +++..++....+.           .|.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~-~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWS-DDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEEC-TTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEe-CCCCEEEEEEeCcccccccCCCCcEEE
Confidence            35689999988754 332    4489999999976643211111 1239999 6666655444332           267


Q ss_pred             EEeCCccccc--eeecccccc--eEEEEEccCCCEEEEeecC----CcEEEeec
Q psy3639          67 LWASAKEECI--QTYRGHSAE--VVGVTFSPDQSTFCSCSMD----HTARIFNT  112 (113)
Q Consensus        67 ~wd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~~----~~i~~~~~  112 (113)
                      .|.+.+...-  ..+......  ...+..++++++++.....    ..+.+.|+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            7777665322  334333322  5578889999988754332    23555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.34  E-value=0.014  Score=39.19  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=54.7

Q ss_pred             cceEcCCCCEEEeee------cCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC------------
Q psy3639           3 VPRVTSSPQRCLTGS------YDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD------------   62 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~------~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------   62 (113)
                      -.+++|+++.++...      .|.  .+.+++.. +.. ..+.. ......-.|+ +++..+++....            
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEeccCCC
Confidence            346889998776544      233  34444532 222 22221 2236778888 666655554322            


Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                      +.+.+.++..++...   .....|..+.|||||..++... ++.+++
T Consensus       430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            223333343333211   2345799999999999887655 456655

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.32  E-value=0.013  Score=39.48  Aligned_cols=102  Identities=13%  Similarity=0.098  Sum_probs=69.6

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCC----C-eeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCcEEEEeCCcccc----
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKS----G-HEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEEC----   75 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~wd~~~~~~----   75 (113)
                      +.++|++...+  +..|.+.|..+    + +.+..+. -......+.++ |++++++ ++..++++.+.|+...+.    
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence            34466655543  46789999887    3 3444444 44556889999 6677655 555589999999877543    


Q ss_pred             --------ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 --------IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                              ...... ...-.+.+|+++|+...+--.|..|..||+
T Consensus       360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence                    222222 223356899999988888888999999986

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.32  E-value=0.015  Score=40.25  Aligned_cols=99  Identities=13%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             CEEEee-ecCCeEEEeeCCCCeeeEEeeCCCCe-EEEEEEcC----CCCCEEEEEeCCCcEEEEeCCccc--cce----e
Q psy3639          11 QRCLTG-SYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSE----PYGDKILTGSFDKTLKLWASAKEE--CIQ----T   78 (113)
Q Consensus        11 ~~~~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~~~~~~~~~~v~~wd~~~~~--~~~----~   78 (113)
                      ++++.. .....++-.|+..|+.+..++.+... |..++-..    -.+..-..|-.++.+..||++-..  .+.    .
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344443 34577888899999999999877654 66554321    123445667778889999998642  221    1


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      + .......+++-+.+| ++++|+.+|.|++||
T Consensus       574 Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd  604 (794)
T PF08553_consen  574 Y-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD  604 (794)
T ss_pred             c-ccCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence            1 123455667766666 589999999999997

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.29  E-value=0.0032  Score=39.46  Aligned_cols=95  Identities=21%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             cCCCCEEEeee---------cCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce
Q psy3639           7 TSSPQRCLTGS---------YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         7 ~~~~~~~~~~~---------~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      ||++++++...         ..+.+.+||+.+++...... ....+....|+ |+++.++-.. ++.+.+.+..+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-Cccccccceee-cCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            57777777632         24667899998876543333 25667889999 7788877665 4678888876553221


Q ss_pred             -eecc---------------c-ccceEEEEEccCCCEEEEeecC
Q psy3639          78 -TYRG---------------H-SAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        78 -~~~~---------------~-~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                       +..+               . -+.-..+-|||+|++|+....|
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence             1111               0 1123568899999999876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.27  E-value=0.015  Score=37.78  Aligned_cols=55  Identities=18%  Similarity=0.156  Sum_probs=35.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          53 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        53 ~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      |.++...+.+ .|.+||..+++.+..+...  +|..+.|+++|++++..+.+ .+.+++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            5566555544 7999999999988888743  38899999999999888755 555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.013  Score=37.89  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=56.4

Q ss_pred             cceEcCCCCEEEe-eecCCe--EEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCc--EEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLT-GSYDRT--CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKT--LKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~--v~~wd~~~~~~~   76 (113)
                      ..+|+|+|+.++. ...|+.  |+++|+..+... .+....+.-..-.|+ |+|+.++ +.+..|.  |.++++..+.. 
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~-  318 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQV-  318 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence            4578999987664 445555  555666655533 344333333466678 6666554 5555565  55556655543 


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      ..+......-..-.|+|+|++++..+.
T Consensus       319 ~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         319 TRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eEeeccCCCCcCccCCCCCCEEEEEec
Confidence            333222222226788999999887664

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.20  E-value=0.017  Score=34.62  Aligned_cols=105  Identities=10%  Similarity=0.201  Sum_probs=61.0

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCC---CeeeEEe--------eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKS---GHEICTY--------RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~---~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      .++++..+.++.+-+.....+|.+..   ...+...        ......+..+.++|..+++++-...+..+..+| .+
T Consensus       123 la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~  201 (248)
T PF06977_consen  123 LAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQ  201 (248)
T ss_dssp             EEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred             EEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence            47888888777777776667776643   2111111        113345789999988888888888888999999 55


Q ss_pred             cccceeeccc---------ccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          73 EECIQTYRGH---------SAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        73 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      ++.+..+.-.         -.+.-.++|.++|+.. ..++.+..++|
T Consensus       202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred             CCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence            6544433311         1346789999999754 45567766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.18  E-value=0.019  Score=35.55  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCe-eeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc-cccceeecc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-EECIQTYRG   81 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~-~~~~~~~~~   81 (113)
                      ++.+-+..++.+. ...+.+|++...+ ....-. .....+.++...   ++.++.|+....+.++..+. ...+..+..
T Consensus        93 ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~  168 (321)
T PF03178_consen   93 AICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVAR  168 (321)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred             EhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence            4444344555544 4789999987776 332222 133367777765   56889999888888774432 222333322


Q ss_pred             --cccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          82 --HSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        82 --~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                        ....+.++.+-++++.+++++.+|.+.++..
T Consensus       169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence              2445777888766678999999999988754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.16  E-value=0.0097  Score=31.08  Aligned_cols=65  Identities=15%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             EEEEEEcCCC---CCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          43 VYAVAFSEPY---GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        43 v~~~~~~~~~---~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      |+++++..-+   ...|+.|+.|..|++|+-  .+.+..+.. ...+..+.-... ..|+-+-.+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            4555554322   357899999999999974  344566653 345666665544 5577777888887775

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.15  E-value=0.02  Score=34.50  Aligned_cols=66  Identities=15%  Similarity=0.107  Sum_probs=43.2

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      |....++.++.|+++| +.+++........... +..+|..+...|. -+.++.- .|+.+.++++....
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~-~~~llvL-sd~~l~~~~L~~l~   67 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPE-LNLLLVL-SDGQLYVYDLDSLE   67 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecc-cCEEEEE-cCCccEEEEchhhc
Confidence            3456788999999998 8899983333332332 3334899998844 4444444 34899999986653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.15  E-value=0.036  Score=37.52  Aligned_cols=101  Identities=15%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcC-CCCCEEEEEeCCCcEEEEeCC---------ccccce
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSE-PYGDKILTGSFDKTLKLWASA---------KEECIQ   77 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~~wd~~---------~~~~~~   77 (113)
                      .++..++.+....+.|||...+.....-. .....|.+++|.+ ++++.+.+.+..+.|.++--.         +...+.
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            34444444445678999998776443322 3578899999953 667788888899999998421         112233


Q ss_pred             ee--cccc-cceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          78 TY--RGHS-AEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        78 ~~--~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+  ..++ .+|.+..|-++|..++.+  ++.+.++|
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence            32  2233 468889999888755443  45666654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=97.15  E-value=0.014  Score=34.31  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEE-------ee-------CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEE
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICT-------YR-------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLW   68 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~w   68 (113)
                      ++.+..+++++++-+.+|.+++||+.+++.+..       +.       .....|..+.++ .+|.-+++-+ +|..+.|
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCCEEEEEe-CCCEEEe
Confidence            456777899999999999999999998765332       11       245678888888 7787776654 4778888


Q ss_pred             eCCcc
Q psy3639          69 ASAKE   73 (113)
Q Consensus        69 d~~~~   73 (113)
                      +..-+
T Consensus        93 ~~~L~   97 (219)
T PF07569_consen   93 SPDLG   97 (219)
T ss_pred             ccccc
Confidence            76443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.11  E-value=0.0037  Score=26.83  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=23.3

Q ss_pred             ceEEEEEccCC---CEEEEeecCCcEEEeecC
Q psy3639          85 EVVGVTFSPDQ---STFCSCSMDHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~---~~~~~~~~~~~i~~~~~~  113 (113)
                      .+.++.|+|.+   .+|+.+-..+.++++|+|
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            57889999844   477777778999999986

It contains a characteristic DLL sequence motif.

>KOG3621|consensus

Probab=97.10  E-value=0.0011  Score=44.39  Aligned_cols=69  Identities=17%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCee-----eEEe-eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHE-----ICTY-RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~-----~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +.+++++..+++.|+..|.|.++.+....+     +... +.|...|++++|+ +++..+++|...|+|.+-.+..
T Consensus        81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence            456788889999999999999998765321     1111 2378899999999 8999999999999998876655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.05  E-value=0.0061  Score=36.78  Aligned_cols=45  Identities=18%  Similarity=0.403  Sum_probs=37.3

Q ss_pred             CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc
Q psy3639          40 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE   85 (113)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~   85 (113)
                      ...|..+.++ |++..+++...+|.+.+|++.+.+........+++
T Consensus       229 ~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  229 QDGIFKMSLS-PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCceEEEEEC-CCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            5678999999 88999999999999999999988776666544433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.0098  Score=38.37  Aligned_cols=104  Identities=17%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             ceEcCCCCEEEee---ecC-CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC-EEEEEeCCCc--EEEEeCCccccc
Q psy3639           4 PRVTSSPQRCLTG---SYD-RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKT--LKLWASAKEECI   76 (113)
Q Consensus         4 ~~~~~~~~~~~~~---~~d-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--v~~wd~~~~~~~   76 (113)
                      .+|+|+++.++..   ... ..+.++++.+++...... ....-..-+|+ |+++ ++++...||.  +.+.|+.... +
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl~~~~-~  274 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDLDGKN-L  274 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCC-CCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence            3567777654432   122 358888888877555444 33444567788 5555 4556666775  5555776665 3


Q ss_pred             eeecccccceEEEEEccCCCEEEEeec-CCcEEEe
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIF  110 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~  110 (113)
                      ..+....+.-..-.|+|+|+.++-.+. .|.-.||
T Consensus       275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY  309 (425)
T ss_pred             eecccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence            334433333346789999998865544 4544444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.97  E-value=0.028  Score=33.10  Aligned_cols=68  Identities=12%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-------c-------ccccceEEEEEccCCCEEEEeecCCc
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-------R-------GHSAEVVGVTFSPDQSTFCSCSMDHT  106 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~~~~~  106 (113)
                      .++..+...   +.+++..+.+|.+++||+.+.+.+...       .       .....|..+.++.+|.-+++-+ +|.
T Consensus        13 s~~~~l~~~---~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~   88 (219)
T PF07569_consen   13 SPVSFLECN---GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD   88 (219)
T ss_pred             CceEEEEeC---CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence            445555544   788999999999999999887654332       1       2345678888888888776654 467


Q ss_pred             EEEeec
Q psy3639         107 ARIFNT  112 (113)
Q Consensus       107 i~~~~~  112 (113)
                      .+.|+.
T Consensus        89 ~y~y~~   94 (219)
T PF07569_consen   89 SYSYSP   94 (219)
T ss_pred             EEEecc
Confidence            777764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.042  Score=34.99  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=72.0

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC---CCcEEEEeCCccccceee
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEECIQTY   79 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~v~~wd~~~~~~~~~~   79 (113)
                      ..+++.+. .++....+..|.+.|..+....+....-. ....+++. +.+..++.+..   ++++.+.|..+.+.....
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            35566666 44445456788999977766665554222 45788888 55555544444   688999998888777765


Q ss_pred             cccccceEEEEEccCCCEEEEee-cCCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCS-MDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~  112 (113)
                      .....+ ..++++|+|..+.+.. .++.+.+.|.
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            433344 7899999999776665 6788888774

>KOG2079|consensus

Probab=96.93  E-value=0.0085  Score=42.32  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEE---EcCCCCCEEEEEeCCCcEEEEe
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVA---FSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      ..++++.+|.+++.|-.+|.|.+||+..++.++.+..+..+...+-   +. ..+..+.++...|.  +|.
T Consensus       134 tsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t-~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  134 TSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT-SQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             eeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe-CCCcEEEEccCCCc--eEE
Confidence            4678899999999999999999999999999998887776655443   33 44456777777775  454

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.79  E-value=0.01  Score=25.47  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=26.3

Q ss_pred             eEEEEEEcCCCC--CEEEEEeCCCcEEEEeCCcc
Q psy3639          42 VVYAVAFSEPYG--DKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus        42 ~v~~~~~~~~~~--~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .+.+++|+|..+  .+++..-..+.+.++|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478899996666  68888888899999999863

It contains a characteristic DLL sequence motif.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.77  E-value=0.036  Score=35.74  Aligned_cols=78  Identities=10%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe-EEEEEEcCCCC-----------------CEEEEEeCCCc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYG-----------------DKILTGSFDKT   64 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~-----------------~~~~~~~~~~~   64 (113)
                      .++++|++++.++...-|.|.++|+.++..++.+++..+. +.-+.......                 -+++-.-..|.
T Consensus       312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~  391 (415)
T PF14655_consen  312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGI  391 (415)
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCe
Confidence            3578999999999888899999999998888877765432 22222111111                 12334455678


Q ss_pred             EEEEeCCccccceeec
Q psy3639          65 LKLWASAKEECIQTYR   80 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~   80 (113)
                      +.+|.++++..+..+.
T Consensus       392 lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  392 LEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEecCCCCEEEEEE
Confidence            8888888877666554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.53  E-value=0.074  Score=31.97  Aligned_cols=107  Identities=8%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCC-CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc------c
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE------C   75 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~------~   75 (113)
                      ..++|+.+ ++++..+.+.|..++.. |+.+..+.-. ..-.-.+++. .++.++++...++.+.++++....      .
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~  104 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLDRAD  104 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence            46777654 77778888888888864 7777766432 2446778877 666666655558888888773321      1


Q ss_pred             ceeec-----ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 IQTYR-----GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...+.     ..+..+-.++|+|.++.|+++-+.....++.+
T Consensus       105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~  146 (248)
T PF06977_consen  105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV  146 (248)
T ss_dssp             EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence            11111     23456889999998888888877777666653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3630|consensus

Probab=96.50  E-value=0.013  Score=41.88  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=63.9

Q ss_pred             eeecCCeEEEeeCCCCeeeE-----------EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeeccc
Q psy3639          15 TGSYDRTCKLWDIKSGHEIC-----------TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGH   82 (113)
Q Consensus        15 ~~~~d~~v~i~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~~~   82 (113)
                      ..+.+..|..||+++.....           +.........++.|+|.-....+....|+.|++..+... +.+.++. .
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~  197 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-V  197 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-c
Confidence            34444567889986543211           111223445788899766667777888899988766443 2233333 3


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .....+++|+|.|..++.|...|++..|-
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEee
Confidence            45678999999999999999999987763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.48  E-value=0.12  Score=33.78  Aligned_cols=56  Identities=18%  Similarity=0.094  Sum_probs=37.0

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      |.+++..+.+ .|.+||..+++.+..+...  +|..+.|+ +++..++..+.+ .+.+.+.
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS-DDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TTSSEEEEE-S--SEEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE-CCCCEEEEEeCC-eEEEEEe
Confidence            6667766654 7999999999999888733  48999999 778888877765 5666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.11  Score=33.14  Aligned_cols=107  Identities=17%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             ceEcCCCCEEEeeec---CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE-EEeCCCcEEEEeCCccccce-e
Q psy3639           4 PRVTSSPQRCLTGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEECIQ-T   78 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~wd~~~~~~~~-~   78 (113)
                      .+++++++.+..+..   ++.+.+.|..+.+.......-..+ ..+++. +.+..++ +-..++.+.+.|.......+ .
T Consensus       121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            467888876665544   688889998888887775544445 889999 6676544 44478899999976654432 1


Q ss_pred             ---ecccccceEEEEEccCCCEEEEeecC---CcEEEeec
Q psy3639          79 ---YRGHSAEVVGVTFSPDQSTFCSCSMD---HTARIFNT  112 (113)
Q Consensus        79 ---~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~  112 (113)
                         .......-..+.++|+|..+.+....   +.+...|.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~  238 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT  238 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence               11122334678899999977665544   36666554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.42  E-value=0.048  Score=34.17  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=42.2

Q ss_pred             eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCCcEEEEeCCccccceeeccc
Q psy3639          21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus        21 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .|-++|+.+++.+..+. -..++.++..+.....+|++.+ .++.+.+||..+++.+.++...
T Consensus       270 eVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            46677889999988887 3456778888854455666554 5789999999999988887744

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114|consensus

Probab=96.24  E-value=0.24  Score=34.75  Aligned_cols=108  Identities=8%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCC----CCeeeEEeeCCCCeEEEEEEcCCCCCE-EEEEeCCCcEEEEeCCccc-c
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIK----SGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAKEE-C   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~v~~wd~~~~~-~   75 (113)
                      ++.+++.+-+.+++|-.+|.|..+.-+    .+....-......+|+.+.+. .++.. +..+.. ..|.+|.+.... .
T Consensus       129 s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~d~~s~lFv~Tt-~~V~~y~l~gr~p~  206 (933)
T KOG2114|consen  129 SSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-SDGKSVLFVATT-EQVMLYSLSGRTPS  206 (933)
T ss_pred             eEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-cCCceeEEEEec-ceeEEEEecCCCcc
Confidence            355677778889999999999887532    112222222356789999998 55554 233332 468889886333 2


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +..+..++..+.+..+++....+++++ +..+.+|+.
T Consensus       207 ~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~s  242 (933)
T KOG2114|consen  207 LKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDS  242 (933)
T ss_pred             eeeeccCCccceeeecCCCCccEEEec-CceEEEEcC
Confidence            444666777888888887555344443 456666654

>KOG2444|consensus

Probab=96.23  E-value=0.02  Score=33.73  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCC-CeEEEEEEcCCCCCEEEEE--eCCCcEEEEeCCc
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTG--SFDKTLKLWASAK   72 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~~~~v~~wd~~~   72 (113)
                      +.+..+++.++.|+.|+..-++.+...-.|. .+......+ ..+..++..  +.+..++.|++..
T Consensus       114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchhh
Confidence            4478889999999999999888887777777 566666665 556666666  7777888887644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.14  E-value=0.16  Score=31.62  Aligned_cols=99  Identities=9%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             cceEcCCCCEEEeeec-CCeEEEeeCCC--C----ee-eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCC-cEEEEeCCcc
Q psy3639           3 VPRVTSSPQRCLTGSY-DRTCKLWDIKS--G----HE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDK-TLKLWASAKE   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d~~v~i~~~~~--~----~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~v~~wd~~~~   73 (113)
                      -++|+|+++.++.+.. .+.+.-|+...  +    +. ...+.......-.++.. .++.+.+++..+| .|..|+.. +
T Consensus       167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCC-C
Confidence            4689999986665544 46777776652  1    11 11112223334455555 6677776555554 89999987 8


Q ss_pred             ccceeecccccceEEEEEc-cCCCEEEEeec
Q psy3639          74 ECIQTYRGHSAEVVGVTFS-PDQSTFCSCSM  103 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~  103 (113)
                      +.+..+......+.+++|- |+.+.|.+.+.
T Consensus       245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            8888777665666777773 45566554443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.01  E-value=0.15  Score=31.66  Aligned_cols=98  Identities=7%  Similarity=0.059  Sum_probs=57.1

Q ss_pred             CCEEEeeec----------CCeEEEeeCCCC----eeeEEe--eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639          10 PQRCLTGSY----------DRTCKLWDIKSG----HEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus        10 ~~~~~~~~~----------d~~v~i~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .+++++|+.          .|.+.++++...    ..+..+  ....++|.+++-.  ++. ++.+. ++.+.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence            356666644          288999998874    122222  2357889998865  234 44443 378999998777


Q ss_pred             ccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +.+........++...+....++++++++.-..+.++.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             ccchhhheecceEEEEEEeccccEEEEEEcccCEEEEE
Confidence            62222222222223334444577899998888777763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.00  E-value=0.23  Score=32.27  Aligned_cols=90  Identities=10%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEE---eeCC-CC----eee----EEeeCC-CCeEEEEEEcCC----------CCCEEEEE
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKL---WDIK-SG----HEI----CTYRGH-QNVVYAVAFSEP----------YGDKILTG   59 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i---~~~~-~~----~~~----~~~~~~-~~~v~~~~~~~~----------~~~~~~~~   59 (113)
                      ...++|+++.++.+..+..+.+   |+.. .+    ...    ..+... ...|+++.+-|-          +...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4578999999999988777655   5331 11    111    112211 156777776542          34678999


Q ss_pred             eCCCcEEEEeCCccccceeecccccceEEEEEcc
Q psy3639          60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSP   93 (113)
Q Consensus        60 ~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~   93 (113)
                      ..+|.+++|.. ++..+....-|..+|..+....
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999975 6666666666788888887743

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.91  E-value=0.32  Score=33.27  Aligned_cols=76  Identities=11%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-ccccceEEEEEc--cCCCEEEEeecCCcEEEee
Q psy3639          35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAEVVGVTFS--PDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        35 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~~~~i~~~~  111 (113)
                      ++.........+.-+ ..+...+.-.....+.+||.+.+....... ...+.|.+++|.  |+|+.+++.+..+.|.++.
T Consensus        24 ~~~T~i~~~~li~gs-s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   24 TFETGISNPSLISGS-SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEecCCCCcceEeec-ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            333333445555555 344444444445579999998886333322 246789999995  5889999999999888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.89  E-value=0.28  Score=32.45  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCC------eEE--EEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQN------VVY--AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      +..++.++.++.+.-.|..+++.+..++....      .+.  .+...  ++..++.++.++.+.-+|.++++.+.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            34566677788999999999988776653322      000  01111  125777788899999999999988877653

The alignment model contains an 8-bladed beta-propeller.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.86  E-value=0.33  Score=33.02  Aligned_cols=105  Identities=7%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             cceEcCCCCEEEeeecC-CeEEEeeCCCCeeeEEe--e------CCCCeEEEEEEcCCCCCEEEEEeCCCcEEE---EeC
Q psy3639           3 VPRVTSSPQRCLTGSYD-RTCKLWDIKSGHEICTY--R------GHQNVVYAVAFSEPYGDKILTGSFDKTLKL---WAS   70 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d-~~v~i~~~~~~~~~~~~--~------~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~---wd~   70 (113)
                      ...|+|++..+++.... ..+++.+......+..+  .      .....|..+.|+ ++|..++... ++.|.+   -..
T Consensus       401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~  478 (591)
T PRK13616        401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLS-RDGVRAAMII-GGKVYLAVVEQT  478 (591)
T ss_pred             CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeC
Confidence            45788988877665432 22333322111111111  1      234579999999 7788766554 466665   232


Q ss_pred             Cccc-cc---eeecc-cccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          71 AKEE-CI---QTYRG-HSAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        71 ~~~~-~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      ..+. .+   ..+.. ....+.++.|..++..+ ++..++.-.+|
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~  522 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVW  522 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceE
Confidence            3333 11   11221 22335778999988854 55444443444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.80  E-value=0.33  Score=32.54  Aligned_cols=59  Identities=7%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          53 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        53 ~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..+++.++..|.|++||.-.......+.+....|..+..+.+|.++++.+.. .+.+-|+
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            3478889999999999976655566677777889999999999988776643 4444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.79  E-value=0.32  Score=33.88  Aligned_cols=70  Identities=11%  Similarity=0.020  Sum_probs=46.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCC---------Cee---eEEe--------eCCCCeEEEEEEcCC--CCCEEEEEeC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKS---------GHE---ICTY--------RGHQNVVYAVAFSEP--YGDKILTGSF   61 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~--~~~~~~~~~~   61 (113)
                      +.++++|++++..|..+.+.+.=.+.         ++.   .+++        ......|..+.|+|.  .+..++.-..
T Consensus        90 i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLts  169 (717)
T PF10168_consen   90 ISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTS  169 (717)
T ss_pred             EEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEec
Confidence            45789999999888766443332211         111   1111        123457899999964  3678999999


Q ss_pred             CCcEEEEeCCcc
Q psy3639          62 DKTLKLWASAKE   73 (113)
Q Consensus        62 ~~~v~~wd~~~~   73 (113)
                      |+.+++||+...
T Consensus       170 dn~lR~y~~~~~  181 (717)
T PF10168_consen  170 DNTLRLYDISDP  181 (717)
T ss_pred             CCEEEEEecCCC
Confidence            999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.75  E-value=0.29  Score=31.58  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCe-------------------------------------------eeEEeeCCC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGH-------------------------------------------EICTYRGHQ   40 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~-------------------------------------------~~~~~~~~~   40 (113)
                      +.+++..--++++...|.|-+|.....+                                           +...++...
T Consensus         7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~   86 (395)
T PF08596_consen    7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ   86 (395)
T ss_dssp             EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred             EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence            4456666678888888988887542110                                           111222346


Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec--c------cccceEEEEEcc-----CC---CEEEEeecC
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR--G------HSAEVVGVTFSP-----DQ---STFCSCSMD  104 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~~~~~~~~  104 (113)
                      ++|++++.+  +--+++.|.++|.+.+.|++....++.-.  .      ....+.++.|+.     |+   -.+++|+..
T Consensus        87 g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   87 GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             -SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            788899886  34688999999999999998765544321  1      234566777762     22   357888999


Q ss_pred             CcEEEeec
Q psy3639         105 HTARIFNT  112 (113)
Q Consensus       105 ~~i~~~~~  112 (113)
                      |.+.+|.+
T Consensus       165 G~v~~fkI  172 (395)
T PF08596_consen  165 GNVLTFKI  172 (395)
T ss_dssp             SEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99988864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4499|consensus

Probab=95.74  E-value=0.21  Score=29.99  Aligned_cols=88  Identities=10%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEee--CCCCee-----eEEeeCC---CC-eEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWD--IKSGHE-----ICTYRGH---QN-VVYAVAFSEPYGDKILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~--~~~~~~-----~~~~~~~---~~-~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~   71 (113)
                      .+|+.+.+ +..+-+.+-+|.-||  ..+|..     +..++..   .. .--.+++. ..|.++++.-..++|...|+.
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecCcEEEEECCC
Confidence            34555554 455666677776666  555532     2222210   11 11233344 567888888888899999999


Q ss_pred             ccccceeecccccceEEEEEc
Q psy3639          72 KEECIQTYRGHSAEVVGVTFS   92 (113)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~   92 (113)
                      +++.+..++-....+.+.+|-
T Consensus       242 tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  242 TGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCcEEEEEEcCCCceEEEEec
Confidence            999999998888899999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.72  E-value=0.31  Score=31.60  Aligned_cols=65  Identities=6%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             ceEcCCCCEEEeeecC----------C-eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTGSYD----------R-TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d----------~-~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~   71 (113)
                      ++.+|.|-.+|...++          . .|.+|+.. |+.+..+.-..+.+.++.|. . ...++....||.++++|+.
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCC
Confidence            3556666655555433          1 48888865 66666554333789999998 5 4566677799999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920|consensus

Probab=95.67  E-value=0.25  Score=35.92  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=52.4

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                      ..|.++.+. .+++.++.+...|.|.+-|..+... .....-...|.+++|+||...++..+..+++.+
T Consensus        69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEe-cccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEE
Confidence            478888888 7788888889999999988776642 222224568899999999999999888877765

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.58  E-value=0.24  Score=33.14  Aligned_cols=70  Identities=23%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             CCCEEEeeecCCeEEEeeCCC----CeeeEEe--e---------C-----------CCCeEEEEEEcC---CCCCEEEEE
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKS----GHEICTY--R---------G-----------HQNVVYAVAFSE---PYGDKILTG   59 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~----~~~~~~~--~---------~-----------~~~~v~~~~~~~---~~~~~~~~~   59 (113)
                      +...++.+..||.+.......    +......  .         +           .......+++.+   ....++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666777778888887766543    2111111  0         0           112345555552   156788999


Q ss_pred             eCCCcEEEEeCCcccccee
Q psy3639          60 SFDKTLKLWASAKEECIQT   78 (113)
Q Consensus        60 ~~~~~v~~wd~~~~~~~~~   78 (113)
                      +.|+.+|+||+.+++++.+
T Consensus       237 ~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEE
T ss_pred             eCCCeEEEEECCCCeEEEE
Confidence            9999999999999887544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1897|consensus

Probab=95.55  E-value=0.57  Score=33.62  Aligned_cols=101  Identities=9%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             EcCC-CCEEEeeec----------CCeEEEeeCCCCeeeEEeeCC--CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639           6 VTSS-PQRCLTGSY----------DRTCKLWDIKSGHEICTYRGH--QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         6 ~~~~-~~~~~~~~~----------d~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +..+ +.++++|..          .|.+.+|.+.....+.....+  .+.+.++..  -++++++.  -+..|++|+..+
T Consensus       782 ~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~vrLye~t~  857 (1096)
T KOG1897|consen  782 FTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSVRLYEWTT  857 (1096)
T ss_pred             ecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEEEEEEccc
Confidence            3344 456666643          466777776654444333222  233444432  34666654  446899999988


Q ss_pred             cccceeecccccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      .+.++....+..++..+.....|+.+++|.-=+.+.+.
T Consensus       858 ~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  858 ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            87777666677778888888889999998876666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.46  E-value=0.3  Score=29.73  Aligned_cols=100  Identities=9%  Similarity=-0.018  Sum_probs=61.5

Q ss_pred             CCCCEEEeeecCC--eEEEeeCCCCeeeEEeeC-CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccccc
Q psy3639           8 SSPQRCLTGSYDR--TCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA   84 (113)
Q Consensus         8 ~~~~~~~~~~~d~--~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~   84 (113)
                      .++.++-+.+.-|  .++.+|+.+++......- ..-.--.+...  ++..+.-.-.++...+||..+.+.+.++.-. .
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~  130 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-G  130 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-S
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecC-C
Confidence            4455555555544  588899999887655432 12223344443  2344445556789999999988877777643 3


Q ss_pred             ceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          85 EVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      .=+.++  .++..|+.+.....++++|.
T Consensus       131 EGWGLt--~dg~~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen  131 EGWGLT--SDGKRLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             S--EEE--ECSSCEEEE-SSSEEEEE-T
T ss_pred             cceEEE--cCCCEEEEECCccceEEECC
Confidence            346666  47888888888888988874

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916|consensus

Probab=95.42  E-value=0.026  Score=39.67  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             CeEEEeeCC--CCee-----eEEeeCCCCeEEEEEEcC--CCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEE-
Q psy3639          20 RTCKLWDIK--SGHE-----ICTYRGHQNVVYAVAFSE--PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV-   89 (113)
Q Consensus        20 ~~v~i~~~~--~~~~-----~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~-   89 (113)
                      |...+|+++  .|+.     +.........+.-+.|+|  ++.-++..+..++.+++........ ..+.+|...+..+ 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            556788764  2332     222333444556666765  3345667777888888876554321 2222233322222 


Q ss_pred             ----------EEccCCCEEEEeecCCcEEEeec
Q psy3639          90 ----------TFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        90 ----------~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                                ..+|||..++.++.||.+++|.+
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence                      26899999999999999988853

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.25  E-value=0.52  Score=31.25  Aligned_cols=67  Identities=13%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe-----E-EEEEEcCCCCCEEEEEe---------CCCcEEEEeCCcccc
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----V-YAVAFSEPYGDKILTGS---------FDKTLKLWASAKEEC   75 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~~~~~~~---------~~~~v~~wd~~~~~~   75 (113)
                      ..++.++.++.|+-+|.++++.+..+......     + ....+.   +..++.++         .++.+..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            67777888999999999999988777543221     1 111122   13344443         357788889999887


Q ss_pred             ceeec
Q psy3639          76 IQTYR   80 (113)
Q Consensus        76 ~~~~~   80 (113)
                      +..+.
T Consensus       188 ~W~~~  192 (488)
T cd00216         188 LWRFY  192 (488)
T ss_pred             eeEee
Confidence            77664

The alignment model contains an 8-bladed beta-propeller.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.21  E-value=0.68  Score=32.37  Aligned_cols=70  Identities=19%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             eEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc---------ccc---ceee--------cccccceEEEEEccC---CCEE
Q psy3639          42 VVYAVAFSEPYGDKILTGSFDKTLKLWASAK---------EEC---IQTY--------RGHSAEVVGVTFSPD---QSTF   98 (113)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~---~~~~   98 (113)
                      .|..+.++ +.|.+++-.+..|...+.=.+.         ++.   .+++        ......|..+.|+|.   +.+|
T Consensus        86 ~v~~i~~n-~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLN-PTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEEC-CCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            46788888 7788888777766443332211         111   1111        123457889999995   5789


Q ss_pred             EEeecCCcEEEeec
Q psy3639          99 CSCSMDHTARIFNT  112 (113)
Q Consensus        99 ~~~~~~~~i~~~~~  112 (113)
                      ++-..|+.+++||+
T Consensus       165 ~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  165 VVLTSDNTLRLYDI  178 (717)
T ss_pred             EEEecCCEEEEEec
Confidence            99999999999997

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.21  E-value=0.47  Score=30.51  Aligned_cols=94  Identities=17%  Similarity=0.084  Sum_probs=44.6

Q ss_pred             ceEcCCCCEEEeeec-C--CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec
Q psy3639           4 PRVTSSPQRCLTGSY-D--RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~-d--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      .+|..+|+.++-++. +  ..+++.|+.+++..+.-.+.........++ +..+.++....+..++--|+.+.+....+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            367888876555444 4  456667888888776555432323345556 445665545455678888888876544454


Q ss_pred             ccccceEEEEEc--cCCCEE
Q psy3639          81 GHSAEVVGVTFS--PDQSTF   98 (113)
Q Consensus        81 ~~~~~v~~~~~~--~~~~~~   98 (113)
                      .....+-...|.  .++..+
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEE
T ss_pred             CCcccccccceeeCCCccEE
Confidence            444444334553  355544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.14  E-value=0.31  Score=31.48  Aligned_cols=92  Identities=7%  Similarity=0.024  Sum_probs=48.7

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEc----CCCCCEEEEEeCCCcEEEEeCCccccceeeccc----c
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS----EPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----S   83 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~----~   83 (113)
                      ++++++ +..++++...+.+..+...........+.+-    ...+..++.-..+|.++++.+...+.+...+..    .
T Consensus       228 ~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  228 YVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             EEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            344444 5679999988777655444222222333332    124667888899999999999887766655432    2


Q ss_pred             cceEEEEEccCCCEEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      ..+....++++|+.+...+..
T Consensus       307 ~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSS
T ss_pred             ccccccEECCCCCEEEEeCcc
Confidence            234456778889877665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395|consensus

Probab=95.03  E-value=0.12  Score=34.34  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             eEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639           5 RVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         5 ~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      |+...+. ++++|+.+|.|++||-.-......+.+...+|..+..+ .+|.+++..+. .++.+-+.
T Consensus       435 c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt-adGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  435 CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT-ADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee-ccCcEEEEecc-cEEEEEEE
Confidence            3444443 78899999999999973233344567788899999998 88887665544 46666653

>KOG4460|consensus

Probab=95.01  E-value=0.46  Score=31.93  Aligned_cols=72  Identities=6%  Similarity=0.059  Sum_probs=47.7

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeC---------CCCeeeEEee-----------CCCCeEEEEEEcCCC--CCEEEEEeCC
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDI---------KSGHEICTYR-----------GHQNVVYAVAFSEPY--GDKILTGSFD   62 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~~~~~~~~   62 (113)
                      -.++.|..++-++.+|.+.++-.         +.++..-..+           ...-.+...+|+|..  ...+..-..|
T Consensus       110 l~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd  189 (741)
T KOG4460|consen  110 LLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD  189 (741)
T ss_pred             EecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence            46788999999888887665542         2232221111           111235678899765  6788888999


Q ss_pred             CcEEEEeCCccccc
Q psy3639          63 KTLKLWASAKEECI   76 (113)
Q Consensus        63 ~~v~~wd~~~~~~~   76 (113)
                      +.+++||......+
T Consensus       190 nviRiy~lS~~tel  203 (741)
T KOG4460|consen  190 NVIRIYSLSEPTEL  203 (741)
T ss_pred             cEEEEEecCCcchh
Confidence            99999998765444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.88  E-value=0.65  Score=30.44  Aligned_cols=95  Identities=11%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             cCCeEEEeeCCCCeeeEEeeCCC--CeEEEEEEc--CCCCCEEEEEeCCCcEEEEeC-Cccc----cceeecc-------
Q psy3639          18 YDRTCKLWDIKSGHEICTYRGHQ--NVVYAVAFS--EPYGDKILTGSFDKTLKLWAS-AKEE----CIQTYRG-------   81 (113)
Q Consensus        18 ~d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~~~~~~~~~~v~~wd~-~~~~----~~~~~~~-------   81 (113)
                      ....+.+||+.+.+.++++.--.  .-...+.|.  |.....++.+.....|..|-- ..++    .+-.+..       
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            35679999999999999997433  234566664  233344555555555555532 2221    1111110       


Q ss_pred             ----------cccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          82 ----------HSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        82 ----------~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                                -..-+..+..|.|.++|.+++. +|.++.||+
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence                      1234688999999999876655 789999997

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.77  E-value=0.56  Score=29.19  Aligned_cols=98  Identities=12%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe-CCccccc----eee
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA-SAKEECI----QTY   79 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd-~~~~~~~----~~~   79 (113)
                      -++++++++++..-....-|+.-.. ..... ......+..+.|. +++.+.+.+ ..|.++.=+ ....+.-    ...
T Consensus       152 r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~  228 (302)
T PF14870_consen  152 RSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI  228 (302)
T ss_dssp             E-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TT
T ss_pred             ECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceec-CCCCEEEEe-CCcEEEEccCCCCccccccccCCc
Confidence            4678888877765444445664321 12222 2246789999999 666665544 778888776 2222211    111


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcE
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTA  107 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i  107 (113)
                      ....-.+..++|.+++...++++ .|.+
T Consensus       229 ~~~~~~~ld~a~~~~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  229 KTNGYGILDLAYRPPNEIWAVGG-SGTL  255 (302)
T ss_dssp             SS--S-EEEEEESSSS-EEEEES-TT-E
T ss_pred             ccCceeeEEEEecCCCCEEEEeC-CccE
Confidence            11223478899998877666554 4444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.60  E-value=0.58  Score=31.41  Aligned_cols=61  Identities=15%  Similarity=0.276  Sum_probs=40.1

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +.+.-+|+.+++............... +. ..+.+++.++.+|.++.+|.++++.+...+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eE-ECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            456677888887766654222111111 11 23456777888999999999999988877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK10115 protease 2; Provisional

Probab=94.43  E-value=1.1  Score=31.16  Aligned_cols=105  Identities=3%  Similarity=-0.038  Sum_probs=56.4

Q ss_pred             ceEcCCCCEEEee-----ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCC-----CcEEEEeCCc
Q psy3639           4 PRVTSSPQRCLTG-----SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFD-----KTLKLWASAK   72 (113)
Q Consensus         4 ~~~~~~~~~~~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-----~~v~~wd~~~   72 (113)
                      ..++|++++++.+     ++...+++.|+.+++.+...-....  ..+.|. +++..+ ++...+     ..+..+++.+
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~-~D~~~~~y~~~~~~~~~~~~v~~h~lgt  208 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWA-NDSWTFYYVRKHPVTLLPYQVWRHTIGT  208 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEe-eCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence            4678999987754     3334577888887763322211222  458898 556544 444432     2577777777


Q ss_pred             c--ccceeecccccceE-EEEEccCCCEEEEeec---CCcEEEee
Q psy3639          73 E--ECIQTYRGHSAEVV-GVTFSPDQSTFCSCSM---DHTARIFN  111 (113)
Q Consensus        73 ~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~---~~~i~~~~  111 (113)
                      +  +....+........ ....+.++++++..+.   ++.+.+++
T Consensus       209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~  253 (686)
T PRK10115        209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD  253 (686)
T ss_pred             ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence            6  32233332222233 2333447777654433   34566665

>PHA02713 hypothetical protein; Provisional

Probab=93.98  E-value=0.91  Score=30.75  Aligned_cols=59  Identities=10%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCc-cc--cceeecccccceEEEEEccCCCEEEEeecCC--cEEEeec
Q psy3639          52 YGDKILTGSFD------KTLKLWASAK-EE--CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDH--TARIFNT  112 (113)
Q Consensus        52 ~~~~~~~~~~~------~~v~~wd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~  112 (113)
                      ++.+.+.|+.+      ..+..||+.+ .+  .+..+...........+  ++...++|+.++  .+..||.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCc
Confidence            35666777654      2367788876 33  33333322222222222  677788888777  4544443

>KOG4499|consensus

Probab=93.94  E-value=0.81  Score=27.68  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=42.8

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEE
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG   59 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   59 (113)
                      +++-.|+++++.-..++|...|..+|+.+.+++--+..+++.+|--++-..+++.
T Consensus       218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            4455778777777788999999999999999988888899999974444444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.93  E-value=0.91  Score=28.25  Aligned_cols=98  Identities=11%  Similarity=0.172  Sum_probs=61.9

Q ss_pred             eEcCCCCEEEeeec-----CCeEEEeeCCCC-eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC----------------
Q psy3639           5 RVTSSPQRCLTGSY-----DRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFD----------------   62 (113)
Q Consensus         5 ~~~~~~~~~~~~~~-----d~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------------   62 (113)
                      .|+++|.+|+..-.     -|.|-+||.+.+ ..+.++..|.-.-..+.+. ++++.++..+..                
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm-~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM-ADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe-cCCcEEEEeCCceecccccCccccchhh
Confidence            47888887665322     367789998754 4567777787777888888 888888766541                


Q ss_pred             --CcEEEEeCCccccceee--c--ccccceEEEEEccCCCEEEEeec
Q psy3639          63 --KTLKLWASAKEECIQTY--R--GHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        63 --~~v~~wd~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                        -.+.+.|..+++.+.+.  .  .+.-.+.+++..++|..++.+..
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence              11223333444433322  2  23346888999888886665544

>PHA02713 hypothetical protein; Provisional

Probab=93.88  E-value=1.3  Score=29.98  Aligned_cols=24  Identities=8%  Similarity=0.099  Sum_probs=15.7

Q ss_pred             cCCCCEEEeeecCC-----eEEEeeCCCC
Q psy3639           7 TSSPQRCLTGSYDR-----TCKLWDIKSG   30 (113)
Q Consensus         7 ~~~~~~~~~~~~d~-----~v~i~~~~~~   30 (113)
                      ..++++++.||.++     .+..||..+.
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            34567778887653     3667887654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.78  E-value=0.26  Score=33.01  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=24.8

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEee
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYR   37 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~   37 (113)
                      +..++++.+.|+++|+||+.+++++.+..
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            56788899999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.77  E-value=0.98  Score=28.08  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=68.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCC-CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc------
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC------   75 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~------   75 (113)
                      ...++|+.+.+.+-.....-.++=..+|..+.++.-. -.....+.+. .++.++++--.++.+.++.+.....      
T Consensus        90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~  168 (316)
T COG3204          90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVISAKV  168 (316)
T ss_pred             ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEEeccc
Confidence            3567888886666555555556666678877766421 1222456665 5566666666677777775543311      


Q ss_pred             ----ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 ----IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                          +......+.....++|+|..+.|+++-+.+.+.|+.+
T Consensus       169 ~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         169 QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence                1111222456788999999999999888888887754

>KOG4441|consensus

Probab=93.68  E-value=1.1  Score=30.55  Aligned_cols=97  Identities=10%  Similarity=0.101  Sum_probs=49.2

Q ss_pred             cCCCCEEEeeecC------CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCc-----EEEEeCCcccc
Q psy3639           7 TSSPQRCLTGSYD------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-----LKLWASAKEEC   75 (113)
Q Consensus         7 ~~~~~~~~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----v~~wd~~~~~~   75 (113)
                      ..++..+++|+.|      ..+..||..+.+ ...+..-..+-.......-++.+.+.|+.||.     +-.||..+.+.
T Consensus       330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W  408 (571)
T KOG4441|consen  330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW  408 (571)
T ss_pred             EECCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence            3456788889988      345567776554 22221111111222222245788889998864     77788776543


Q ss_pred             ceeecccccceEEEEE-ccCCCEEEEeecCC
Q psy3639          76 IQTYRGHSAEVVGVTF-SPDQSTFCSCSMDH  105 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~  105 (113)
                      -..-.-.. ....... .-+|...++|+.++
T Consensus       409 ~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  409 TPVAPMLT-RRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             cccCCCCc-ceeeeEEEEECCEEEEEcCcCC
Confidence            22211111 1111111 12566667776554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.68  E-value=0.91  Score=27.42  Aligned_cols=105  Identities=13%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             cceEcCCCCEEEeee-cCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe-CCcccc-ceee
Q psy3639           3 VPRVTSSPQRCLTGS-YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA-SAKEEC-IQTY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd-~~~~~~-~~~~   79 (113)
                      -.+++++++.++... .++.-.+|-...+....... ....+..-.|. +++..+.....+...+++. ..++.. ....
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v  105 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGTGEPVEV  105 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCcccccccc-CCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence            356888998776544 22223344433343333322 22356777888 5577766666666666663 223321 1111


Q ss_pred             ccc--ccceEEEEEccCCCEEEEee---cCCcEEE
Q psy3639          80 RGH--SAEVVGVTFSPDQSTFCSCS---MDHTARI  109 (113)
Q Consensus        80 ~~~--~~~v~~~~~~~~~~~~~~~~---~~~~i~~  109 (113)
                      ...  ...|..+++||||..++...   .++.+.+
T Consensus       106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v  140 (253)
T PF10647_consen  106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV  140 (253)
T ss_pred             cccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence            111  12899999999999887655   2455554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.57  E-value=1.4  Score=29.31  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             CCEEEeeecCCeEEEe-eCCCC-e----eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639          10 PQRCLTGSYDRTCKLW-DIKSG-H----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~-~~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      +..++..++||.|.-| |.+.+ .    .++.++-...++..+.-. .+.+.+++-+.+|++..+.....+.+..... -
T Consensus       280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~  357 (733)
T COG4590         280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-Y  357 (733)
T ss_pred             ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhh-h
Confidence            4567888899988866 44332 1    223333233445554433 4456788888899998886555543332222 2


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +....+++||.++++++-. .|.++++.+
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l  385 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSED-QGKIRLAQL  385 (733)
T ss_pred             cCcceeeeCcccchheeec-CCceEEEEe
Confidence            3456689999999887754 567777654

>KOG1916|consensus

Probab=93.49  E-value=0.049  Score=38.41  Aligned_cols=76  Identities=16%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEE-----------EEcCCCCCEEEEEeCCCcEEEEeCC---
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV-----------AFSEPYGDKILTGSFDKTLKLWASA---   71 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~~~~~~~~~v~~wd~~---   71 (113)
                      +.++.-++..+..++.+++-+..+... ..+.+|...+..+           .++ ++|..++....||.+++|.+.   
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lS-pDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLS-PDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeC-CCCcEEEEeecCCccceeeeeeec
Confidence            344555666777788888766543221 2233354333322           245 889999999999999988753   


Q ss_pred             --ccccceeecccc
Q psy3639          72 --KEECIQTYRGHS   83 (113)
Q Consensus        72 --~~~~~~~~~~~~   83 (113)
                        ...++...+.|.
T Consensus       269 ~~~~rclhewkphd  282 (1283)
T KOG1916|consen  269 KIVHRCLHEWKPHD  282 (1283)
T ss_pred             cccHhhhhccCCCC
Confidence              234555555554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.46  E-value=0.26  Score=20.42  Aligned_cols=27  Identities=22%  Similarity=0.148  Sum_probs=19.0

Q ss_pred             EEEEEeCCCcEEEEeCCccccceeecc
Q psy3639          55 KILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus        55 ~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .+++...++.|.++|..+++.+.....
T Consensus         6 lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         6 LYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            444455578999999988776666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.38  E-value=0.81  Score=25.90  Aligned_cols=28  Identities=14%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             cceEEEEEccCC------CEEEEeecCCcEEEee
Q psy3639          84 AEVVGVTFSPDQ------STFCSCSMDHTARIFN  111 (113)
Q Consensus        84 ~~v~~~~~~~~~------~~~~~~~~~~~i~~~~  111 (113)
                      ..+..++|||.|      -.|++-+.++.+.+|.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            378899999944      3678889999999985

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.14  E-value=1.1  Score=26.56  Aligned_cols=49  Identities=8%  Similarity=0.167  Sum_probs=34.7

Q ss_pred             CEEEEEeCCCcEEEEeCCc--cccceeecccccceEEEEEccCCCEEEEeec
Q psy3639          54 DKILTGSFDKTLKLWASAK--EECIQTYRGHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        54 ~~~~~~~~~~~v~~wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      ..+..+...+.|.+|++..  .+.+..+..- +.|..+.++..|+++++-=.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            3333335667899999883  3455666644 67889999999999988533

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.10  E-value=1.2  Score=26.94  Aligned_cols=59  Identities=15%  Similarity=0.298  Sum_probs=39.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          51 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..++.++.|..+| +.+++........... ....|..+..-|+-+.+++-+ |+.++++++
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L   63 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDL   63 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEc
Confidence            3467888899998 8888883322222222 223488888888777766654 489999886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.99  E-value=2.3  Score=30.09  Aligned_cols=72  Identities=10%  Similarity=0.084  Sum_probs=47.0

Q ss_pred             CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc----cceeec----c----c---ccceEEEEEccCCCEEEEeecC
Q psy3639          40 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE----CIQTYR----G----H---SAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~----~~~~~~----~----~---~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      ..+..+++|+|-+...++..+..|...+|++....    ....+.    +    +   ...-..+.|.++.+.|++++. 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence            34678999998888899999999999999992111    011110    0    0   112236888887777777754 


Q ss_pred             CcEEEeec
Q psy3639         105 HTARIFNT  112 (113)
Q Consensus       105 ~~i~~~~~  112 (113)
                      ..+.++|+
T Consensus       224 ~~l~~~d~  231 (765)
T PF10214_consen  224 SKLMLIDF  231 (765)
T ss_pred             CceEEEEC
Confidence            45566665

These proteins are found in fungi.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.85  E-value=1.5  Score=27.41  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             EEeeCCCCeeeEEeeCCCC--eEEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCcc-ccceeecccccceEEEEEccC
Q psy3639          23 KLWDIKSGHEICTYRGHQN--VVYAVAFSEPYGDKILTGSFD-----KTLKLWASAKE-ECIQTYRGHSAEVVGVTFSPD   94 (113)
Q Consensus        23 ~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~-----~~v~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~   94 (113)
                      .++|........++...+.  .--.-.|+ +++.+++..-.|     |.|-+||.+.+ +.+-.+..+.-....+.+.+|
T Consensus        94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490          94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             EEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence            3566555544444432211  11223466 778887765443     67999998864 456677777777788999999


Q ss_pred             CCEEEEeec
Q psy3639          95 QSTFCSCSM  103 (113)
Q Consensus        95 ~~~~~~~~~  103 (113)
                      |+.++++..
T Consensus       173 GrtlvvanG  181 (366)
T COG3490         173 GRTLVVANG  181 (366)
T ss_pred             CcEEEEeCC
Confidence            999987643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.51  E-value=0.37  Score=19.75  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=17.6

Q ss_pred             cceEEEEEccCCCEEEEeec-C--CcEEEe
Q psy3639          84 AEVVGVTFSPDQSTFCSCSM-D--HTARIF  110 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~-~--~~i~~~  110 (113)
                      .......|+|||+.|+-.+. +  |...||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            45567899999998865544 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>smart00564 PQQ beta-propeller repeat

Probab=92.27  E-value=0.35  Score=18.88  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=19.6

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEE
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICT   35 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~   35 (113)
                      ..++.++.++.+..+|..+++.+..
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3577777889999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.99  E-value=1.2  Score=24.35  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=53.3

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCC--------eeeEEeeCCCCeEEEEEEcC---CC-CCEEEEEeCCCcEEEEeC
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSG--------HEICTYRGHQNVVYAVAFSE---PY-GDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~--------~~~~~~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~~v~~wd~   70 (113)
                      +-++.....-|++++..++|.+++....        ..+..+. ....|++++-.+   .. ...|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            4456666677888889999999987643        2344444 445566665442   22 345666655 56889999


Q ss_pred             CccccceeecccccceEEEEE
Q psy3639          71 AKEECIQTYRGHSAEVVGVTF   91 (113)
Q Consensus        71 ~~~~~~~~~~~~~~~v~~~~~   91 (113)
                      ....-++.-. -...++++.+
T Consensus        81 ~~N~d~Fyke-~~DGvn~i~~  100 (136)
T PF14781_consen   81 ENNSDLFYKE-VPDGVNAIVI  100 (136)
T ss_pred             ccCchhhhhh-CccceeEEEE
Confidence            8765444333 2345666665

>KOG3630|consensus

Probab=91.99  E-value=0.79  Score=33.63  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             EEeeecCCeEEEeeCCCCee-eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc--ccceeeccc-ccceEE
Q psy3639          13 CLTGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGH-SAEVVG   88 (113)
Q Consensus        13 ~~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~--~~~~~~~~~-~~~v~~   88 (113)
                      .+....|+.|++..+..... ...+ ......++++|+ +.|..++.|..+|++..|...-.  ..+...... .-.|.+
T Consensus       171 ~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             hhhhccccchhhhhhhhhhhhhccc-CcccceeeEEec-cccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeE
Confidence            44455566666665433221 1122 245668999999 78999999999999998864322  122222211 356788


Q ss_pred             EEEccCCCEEEE
Q psy3639          89 VTFSPDQSTFCS  100 (113)
Q Consensus        89 ~~~~~~~~~~~~  100 (113)
                      +.|-..-.++++
T Consensus       249 v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  249 VTWLSTQEFLVV  260 (1405)
T ss_pred             EEEecceeEEEE
Confidence            888655555443

>PHA03098 kelch-like protein; Provisional

Probab=91.82  E-value=2.7  Score=28.17  Aligned_cols=100  Identities=5%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             CCCCEEEeeecC------CeEEEeeCCCCeeeEEeeCCCCe--EEEEEEcCCCCCEEEEEeCCC--------cEEEEeCC
Q psy3639           8 SSPQRCLTGSYD------RTCKLWDIKSGHEICTYRGHQNV--VYAVAFSEPYGDKILTGSFDK--------TLKLWASA   71 (113)
Q Consensus         8 ~~~~~~~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~--------~v~~wd~~   71 (113)
                      .++++++.|+.+      ..+..||..+.+ .........+  -.++..  .++..++.|+.++        .+..||..
T Consensus       388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        388 VNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             ECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCC
Confidence            355666777632      346677876543 1111110000  011222  2345556665432        37788887


Q ss_pred             ccccce--eecccccceEEEEEccCCCEEEEeecC-----CcEEEeec
Q psy3639          72 KEECIQ--TYRGHSAEVVGVTFSPDQSTFCSCSMD-----HTARIFNT  112 (113)
Q Consensus        72 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~  112 (113)
                      +.+...  .+.........+.+  ++..++.|+.+     +.+.+||.
T Consensus       465 ~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        465 TNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             CCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence            654322  11111111111222  56666666654     45677765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.78  E-value=3.5  Score=29.33  Aligned_cols=71  Identities=10%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCe--------EEEEEEc-C--------------CCCCEEEEEeCCCcEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV--------VYAVAFS-E--------------PYGDKILTGSFDKTLK   66 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------v~~~~~~-~--------------~~~~~~~~~~~~~~v~   66 (113)
                      +..++.++.++.|.-.|..+|+.+..++.....        ...+.+- .              ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            455666677788888999999988777532211        1112211 0              1234677888899999


Q ss_pred             EEeCCccccceeec
Q psy3639          67 LWASAKEECIQTYR   80 (113)
Q Consensus        67 ~wd~~~~~~~~~~~   80 (113)
                      -.|.++++.+..+.
T Consensus       274 ALDA~TGk~~W~fg  287 (764)
T TIGR03074       274 ALDADTGKLCEDFG  287 (764)
T ss_pred             EEECCCCCEEEEec
Confidence            99999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.66  E-value=0.86  Score=22.97  Aligned_cols=41  Identities=20%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             eCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEe
Q psy3639          60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        60 ~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                      ..+|.+.-||+.+++..-.+. .-.-.+.++.++++.+++++
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEE
Confidence            445778889988876433333 22345789999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.27  E-value=2.4  Score=26.44  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=44.0

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceE-----EEEEccCCCEEEEeecCCcEEEee
Q psy3639          43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVV-----GVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        43 v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +.++... .+|.+|++.-.-..|.+.|.++++.+..+.+....-.     .+++-.+-+++-....++.|.++|
T Consensus       146 iNsV~~~-~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  146 INSVDKD-DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             eeeeeec-CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence            4566665 6678899888888899999889888888765522111     133433444443445667777775

>KOG4441|consensus

Probab=91.19  E-value=3.2  Score=28.41  Aligned_cols=92  Identities=14%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             CCEEEeeecCC------eEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCC-C-----cEEEEeCCcccc
Q psy3639          10 PQRCLTGSYDR------TCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFD-K-----TLKLWASAKEEC   75 (113)
Q Consensus        10 ~~~~~~~~~d~------~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~-----~v~~wd~~~~~~   75 (113)
                      +.+++.|+.++      .+..||..++.-  ...+. ....-.+++..  ++...++|+.+ |     .+..||.+..+.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            45777787773      566788776632  22222 11222333333  36778888888 3     477788877653


Q ss_pred             ce--eecccccceEEEEEccCCCEEEEeecCCc
Q psy3639          76 IQ--TYRGHSAEVVGVTFSPDQSTFCSCSMDHT  106 (113)
Q Consensus        76 ~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  106 (113)
                      ..  .+........ ++ .-+|...++|+.||.
T Consensus       362 ~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~  392 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGE  392 (571)
T ss_pred             eccCCccCccccce-eE-EECCEEEEEeccccc
Confidence            33  2221111111 11 126777778877753

>KOG2247|consensus

Probab=91.05  E-value=0.065  Score=35.27  Aligned_cols=91  Identities=11%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             cCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc
Q psy3639           7 TSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE   85 (113)
Q Consensus         7 ~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~   85 (113)
                      +.++. .++.+-..+.+.+|++.+....+.-.+-...-.-+.|+ +....++.+...|.+.+++..+.+.......|..+
T Consensus        83 DkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR  161 (615)
T KOG2247|consen   83 DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR  161 (615)
T ss_pred             ccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEeccchhhhhhhcccccc
Confidence            33444 34456667889999986543221111122222336788 66777788888899999998887766666657778


Q ss_pred             eEEEEEccCCCEE
Q psy3639          86 VVGVTFSPDQSTF   98 (113)
Q Consensus        86 v~~~~~~~~~~~~   98 (113)
                      +..+++.+.+..+
T Consensus       162 gtq~av~lEd~vi  174 (615)
T KOG2247|consen  162 GTQIAVTLEDYVI  174 (615)
T ss_pred             eeEEEecccceee
Confidence            8889998876543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.73  E-value=4  Score=28.10  Aligned_cols=97  Identities=7%  Similarity=0.045  Sum_probs=54.2

Q ss_pred             EEEeeecCCeEEEeeCCC-----Ceee--EEeeC---CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc--ceee
Q psy3639          12 RCLTGSYDRTCKLWDIKS-----GHEI--CTYRG---HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC--IQTY   79 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~-----~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~--~~~~   79 (113)
                      ++|+- ....|.+|.+..     ++.+  ++.+-   ..-.-....|+ |....++.-.....-.+++++....  ..-+
T Consensus        75 LLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvSV~~sV~~d~srVkaDi  152 (671)
T PF15390_consen   75 LLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVSVLPSVHCDSSRVKADI  152 (671)
T ss_pred             eEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence            44444 457899998752     1211  11111   11112456788 5566666665544434555544322  2223


Q ss_pred             cccccceEEEEEccCCCEEEEeecC-CcEEEee
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMD-HTARIFN  111 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~  111 (113)
                      + ..+.|.+-+|.+||+.++++-.. =+-++||
T Consensus       153 ~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  153 K-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             c-CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            2 45679999999999988776433 3566776

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.18  E-value=4.3  Score=27.52  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=45.1

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCC-eEEE----------EEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQN-VVYA----------VAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~v~~----------~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      +..++.++.++.|.-.|..+++.+..+..... .+..          ++..   +..++.++.++.+.-.|..+++.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            34566666678888889999998877653211 1111          1121   34566778889999999999987766


Q ss_pred             ec
Q psy3639          79 YR   80 (113)
Q Consensus        79 ~~   80 (113)
                      ..
T Consensus       146 ~~  147 (527)
T TIGR03075       146 KK  147 (527)
T ss_pred             cc
Confidence            54

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.98  E-value=0.79  Score=18.80  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=21.4

Q ss_pred             EEeeecCCeEEEeeCCCCeeeEEeeC
Q psy3639          13 CLTGSYDRTCKLWDIKSGHEICTYRG   38 (113)
Q Consensus        13 ~~~~~~d~~v~i~~~~~~~~~~~~~~   38 (113)
                      +..++.+|.++-.|.++|+.+..++.
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            45568899999999999998887763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.78  E-value=3.9  Score=26.43  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=37.0

Q ss_pred             EEEEEEcCCCCCEEE-EEeCCC----cEEEEeCCccccceeecccccceEEEEEccCCCEEEEeec
Q psy3639          43 VYAVAFSEPYGDKIL-TGSFDK----TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        43 v~~~~~~~~~~~~~~-~~~~~~----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      +....++ |++++++ +.+..|    .++++|+.+++.+...-.. .....+.|.++++.|+-...
T Consensus       126 ~~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  126 LGGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEEC
T ss_pred             eeeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEe
Confidence            3467788 6777665 434444    4999999999765432111 11223999999887765543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.68  E-value=4.1  Score=26.61  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=37.5

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc-ccceEEEEEccCC
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-SAEVVGVTFSPDQ   95 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~   95 (113)
                      +++..++.+ |+++.++.-..+|.+.+....-.+.+..+... ......+.|+-+.
T Consensus       217 ~~i~~iavS-png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVS-PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEEC-CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            579999999 88999998899999888865544444444433 2344567776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.62  E-value=4.3  Score=26.72  Aligned_cols=102  Identities=15%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             CCEEEeeecCCeEEEeeCCCCe-----eeEEeeCCCCeEEEEEEcC---CCCCEEEEEeCCCcEEEEeCCc--cc-----
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGH-----EICTYRGHQNVVYAVAFSE---PYGDKILTGSFDKTLKLWASAK--EE-----   74 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~v~~wd~~~--~~-----   74 (113)
                      ...+++|+..|.++||+.....     .+.+.+ -..||..+..-.   .......+.-.-..+.+|.+..  +.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3589999999999999985432     222222 456777776542   2223333335556777776621  11     


Q ss_pred             --cceeeccc--ccceEEEEEcc----C-CCEEEEeecCCcEEEeec
Q psy3639          75 --CIQTYRGH--SAEVVGVTFSP----D-QSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 --~~~~~~~~--~~~v~~~~~~~----~-~~~~~~~~~~~~i~~~~~  112 (113)
                        .+.....|  ....+++.+-|    . ..++++-+.||.+.+++-
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq  162 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ  162 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence              12222222  22334444433    2 357888999999999874

>KOG4460|consensus

Probab=89.29  E-value=5.3  Score=27.31  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             eEEEEEEcCCCCCEEEEEeCCCcEEEEeC---------Cccccceeec-----------ccccceEEEEEccCC---CEE
Q psy3639          42 VVYAVAFSEPYGDKILTGSFDKTLKLWAS---------AKEECIQTYR-----------GHSAEVVGVTFSPDQ---STF   98 (113)
Q Consensus        42 ~v~~~~~~~~~~~~~~~~~~~~~v~~wd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~~   98 (113)
                      .|..+..+ +.|..++-.+.+|.+.++=.         .+++..-..+           ...-.+...+|+|+.   .++
T Consensus       105 eV~~vl~s-~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLS-PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEec-CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            35677788 77888888888887666531         2232211110           112245678899965   577


Q ss_pred             EEeecCCcEEEeec
Q psy3639          99 CSCSMDHTARIFNT  112 (113)
Q Consensus        99 ~~~~~~~~i~~~~~  112 (113)
                      ..-..|+.+++||+
T Consensus       184 ~iL~sdnviRiy~l  197 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSL  197 (741)
T ss_pred             EEEecCcEEEEEec
Confidence            78888999999986

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.24  E-value=3.9  Score=25.66  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=37.1

Q ss_pred             CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          39 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        39 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ....+..+... +++.+++.+..-....-||.-.............++.++.|.|++...+.+ ..|.|++=+
T Consensus       143 ~~gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  143 TSGSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             ----EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CcceeEeEEEC-CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            44567777777 778877777655555667754332222222245789999999998765544 677776543

>KOG3616|consensus

Probab=89.10  E-value=1.1  Score=31.74  Aligned_cols=62  Identities=11%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA   69 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd   69 (113)
                      +..+|.++.++.++.||.+.+||........... ...|-..+.|.   +..+++...|..+.-|.
T Consensus        20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~t---nhgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFT---NHGLVTATSDRRALAWK   81 (1636)
T ss_pred             eeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeee---ccceEEEeccchhheee
Confidence            3456889999999999999999986544322222 22233344444   34456666666666664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.07  E-value=3.7  Score=25.22  Aligned_cols=94  Identities=9%  Similarity=0.076  Sum_probs=55.5

Q ss_pred             CCCCEEEeeecCCeEEEeeCCCCeeeEEeeCC--C---CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec--
Q psy3639           8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGH--Q---NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR--   80 (113)
Q Consensus         8 ~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~--   80 (113)
                      .+++.++.+.....++.+|..+.+....+...  .   ..+..+.+.  +|...+=.-....|...|..+++....+.  
T Consensus       137 ~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls  214 (264)
T PF05096_consen  137 SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLS  214 (264)
T ss_dssp             ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-H
T ss_pred             cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh
Confidence            46677777777788999998887766555422  2   235566665  35555555555667777888876544331  


Q ss_pred             -------------ccccceEEEEEccCCCEEEEeec
Q psy3639          81 -------------GHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        81 -------------~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                                   ....-.+.++|.|....+++.+.
T Consensus       215 ~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  215 GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             HhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence                         01234688999997776666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=88.66  E-value=5.6  Score=26.76  Aligned_cols=62  Identities=10%  Similarity=0.124  Sum_probs=30.6

Q ss_pred             CCCEEEeeecCC------eEEEeeCCCCeeeEEeeC---CCCeEEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCccc
Q psy3639           9 SPQRCLTGSYDR------TCKLWDIKSGHEICTYRG---HQNVVYAVAFSEPYGDKILTGSFD-----KTLKLWASAKEE   74 (113)
Q Consensus         9 ~~~~~~~~~~d~------~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~-----~~v~~wd~~~~~   74 (113)
                      ++.+++.|+.++      .+..||..+.+- ..+..   .......+.   .++..++.|+.+     ..+..||..+.+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~---~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV---FNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE---ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            445666666532      356677665432 11111   111112222   235666777765     246678876654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.62  E-value=0.86  Score=17.36  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=16.5

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          86 VVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        86 v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      ...++.+++|+.+++-...+.|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3567777777776666666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.11  E-value=3.1  Score=28.30  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      .-+++.++..|-|++||-........+.+....|..+... .+|..+++.+. .++.+-|+
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCcEEEEeec-ceEEEEec
Confidence            3478899999999999965444444556667778888888 77877766555 46667765

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=87.97  E-value=0.99  Score=17.32  Aligned_cols=24  Identities=0%  Similarity=0.126  Sum_probs=18.5

Q ss_pred             cceEcCCCCEEEeeecCCeEEEee
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWD   26 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~   26 (113)
                      +.++.-.+.+++.+...+.+|+|+
T Consensus         4 i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    4 IEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             EEEEEccCCEEEEEeCCCeEEecC
Confidence            445666777888888888999874

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.85  E-value=5  Score=25.23  Aligned_cols=106  Identities=11%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             eEcCCCCEEEeeec-----------CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCc
Q psy3639           5 RVTSSPQRCLTGSY-----------DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAK   72 (113)
Q Consensus         5 ~~~~~~~~~~~~~~-----------d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~   72 (113)
                      .+.|+|.+.+.-..           -|.++.++. .+.....+..+-..-..++|+ |+++.++.... .+.+.-|++..
T Consensus       117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCc
Confidence            45666665554322           133333343 455555555555566889999 66766555544 57788777652


Q ss_pred             --cc---c--ceeecccccceEEEEEccCCCEEEEeecCC-cEEEeec
Q psy3639          73 --EE---C--IQTYRGHSAEVVGVTFSPDQSTFCSCSMDH-TARIFNT  112 (113)
Q Consensus        73 --~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~i~~~~~  112 (113)
                        +.   .  ...+....+..=.++...+|++.+.+..+| .|..|+.
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence              11   1  111111122223455666777664444443 6766653

>KOG1900|consensus

Probab=87.12  E-value=11  Score=28.52  Aligned_cols=87  Identities=15%  Similarity=0.271  Sum_probs=51.7

Q ss_pred             ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC--------EEEEEeCCCcEEEEeCC----ccc-----cceee
Q psy3639          17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD--------KILTGSFDKTLKLWASA----KEE-----CIQTY   79 (113)
Q Consensus        17 ~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~v~~wd~~----~~~-----~~~~~   79 (113)
                      +.|..+.+|+..++.....+.+-...|..+.+-.|...        +++.++. -.+.++-+.    ++.     ...++
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceee
Confidence            34778999999988878888777777777665423332        2333332 234444321    111     01233


Q ss_pred             cccccceEEEEEccCCCEEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      ...+-.|.++....+|+.|++|-.+
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg  199 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDG  199 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCC
Confidence            3345678888888899977776544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.93  E-value=9.3  Score=27.38  Aligned_cols=79  Identities=11%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             CeEEEeeCCCCeeeEEeeCC--C----------------CeEEEEEEcCCCCCEEEE-EeCCCcEEEEeCCccccceeec
Q psy3639          20 RTCKLWDIKSGHEICTYRGH--Q----------------NVVYAVAFSEPYGDKILT-GSFDKTLKLWASAKEECIQTYR   80 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~--~----------------~~v~~~~~~~~~~~~~~~-~~~~~~v~~wd~~~~~~~~~~~   80 (113)
                      |.|.-+|+.+++.+......  .                .+...-... ..+.+++. ++.|+.++-+|.++++.+.+.+
T Consensus       641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~-TagglvF~~gt~d~~l~A~D~~tGk~lW~~~  719 (764)
T TIGR03074       641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLA-TAGGLVFIGATQDNYLRAYDLSTGKELWKAR  719 (764)
T ss_pred             EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEE-EcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence            67888899888876555421  0                011111111 12345554 7889999999999999888776


Q ss_pred             ccccc-eEEEEEc-cCCCEEE
Q psy3639          81 GHSAE-VVGVTFS-PDQSTFC   99 (113)
Q Consensus        81 ~~~~~-v~~~~~~-~~~~~~~   99 (113)
                      ...+. -.-+.|. .+|+..+
T Consensus       720 l~~~~~a~P~tY~~~~GkQYV  740 (764)
T TIGR03074       720 LPAGGQATPMTYMGKDGKQYV  740 (764)
T ss_pred             CCCCcccCCEEEEecCCEEEE
Confidence            43221 1224555 5776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.26  E-value=5.2  Score=23.81  Aligned_cols=50  Identities=16%  Similarity=0.304  Sum_probs=35.2

Q ss_pred             CEEEeeecCCeEEEeeCC--CCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC
Q psy3639          11 QRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD   62 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   62 (113)
                      +.+..+.....|.+|++.  ......++. .-+.|..+..+ ..|.++++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~-~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYS-EAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEec-cccceEEEEEee
Confidence            444443556789999987  334556665 44788999999 778998886654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.94  E-value=7  Score=25.03  Aligned_cols=104  Identities=10%  Similarity=0.067  Sum_probs=53.7

Q ss_pred             ceEcCCCCEEEeeec----------CCeEEEeeCCCCeeeEEeeCCCC-eE------EEEEEcCCCCCEEEEEeCC--Cc
Q psy3639           4 PRVTSSPQRCLTGSY----------DRTCKLWDIKSGHEICTYRGHQN-VV------YAVAFSEPYGDKILTGSFD--KT   64 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~-~v------~~~~~~~~~~~~~~~~~~~--~~   64 (113)
                      ..++|+++.++++..          .-.|.+||..+-.+...+.--.. ..      ..+.++ .++++++..+..  ..
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls-~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS-ADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE--TTSSEEEEEEESSSEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc-cCCcEEEEEccCCCCe
Confidence            356888887776432          34578999988877665542211 11      123444 455555444442  24


Q ss_pred             EEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      |.+-|+...+.+..+...  .+..+--++ .+.|.+-|.||.+.-..
T Consensus       120 VtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~  163 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVT  163 (342)
T ss_dssp             EEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred             EEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEE
Confidence            666666666655555432  222222122 23466666777665443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.48  E-value=5.5  Score=24.74  Aligned_cols=50  Identities=10%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEee------cCCcEEEeec
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS------MDHTARIFNT  112 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~i~~~~~  112 (113)
                      ..+++||..+.+....-..-.+.|..+.|..+.+.++.|.      ....+..||+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~   71 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDF   71 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEec
Confidence            3588999877765555555667899999975555555543      2334555554

>PHA02790 Kelch-like protein; Provisional

Probab=85.45  E-value=8.7  Score=25.68  Aligned_cols=97  Identities=8%  Similarity=-0.022  Sum_probs=45.0

Q ss_pred             cCCCCEEEeeecCC---eEEEeeCCCCeeeEEe---eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc--ee
Q psy3639           7 TSSPQRCLTGSYDR---TCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI--QT   78 (113)
Q Consensus         7 ~~~~~~~~~~~~d~---~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~--~~   78 (113)
                      ..++++++.|+.++   .+..||..+.. ....   ...........   .++.+.+.|   |.+..||..+.+..  ..
T Consensus       360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~~---~~~~IYv~G---G~~e~ydp~~~~W~~~~~  432 (480)
T PHA02790        360 SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCALV---FGRRLFLVG---RNAEFYCESSNTWTLIDD  432 (480)
T ss_pred             EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEEE---ECCEEEEEC---CceEEecCCCCcEeEcCC
Confidence            34566777777543   35567765432 1111   10111111222   235555555   35677888765432  22


Q ss_pred             ecccccceEEEEEccCCCEEEEeecC-----CcEEEeec
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMD-----HTARIFNT  112 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~  112 (113)
                      +...........  -+++..++|+.+     ..+..||.
T Consensus       433 m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        433 PIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             CCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence            221111112222  266777777654     34666664

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.38  E-value=11  Score=26.78  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             CCEEEeeecCCeEEEeeCCCC--------------------eeeEEeeCCCCeEEEEEEcC-CCCCEEEEEeCCCcEEEE
Q psy3639          10 PQRCLTGSYDRTCKLWDIKSG--------------------HEICTYRGHQNVVYAVAFSE-PYGDKILTGSFDKTLKLW   68 (113)
Q Consensus        10 ~~~~~~~~~d~~v~i~~~~~~--------------------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~~w   68 (113)
                      .+.|+.+.+||.|.+|.+++-                    ++...+. -...+..++++. ...+++|.++....|.+|
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            357888999999999966210                    0112222 334677888752 223566666666777777


Q ss_pred             eCCc--ccccee-ecccccceEEEEEccC-----CC-EEEEeecCCcEEEeec
Q psy3639          69 ASAK--EECIQT-YRGHSAEVVGVTFSPD-----QS-TFCSCSMDHTARIFNT  112 (113)
Q Consensus        69 d~~~--~~~~~~-~~~~~~~v~~~~~~~~-----~~-~~~~~~~~~~i~~~~~  112 (113)
                      -...  .+.... -..+...|.+++|-++     |. .++.++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4432  221111 1113445777888653     32 6777888999988875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.16  E-value=6.1  Score=23.68  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=50.2

Q ss_pred             CCEEEeeec--CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccceeecccccce
Q psy3639          10 PQRCLTGSY--DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus        10 ~~~~~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      ++++.+.+.  ...|+.||+.+++.+....-....+..--.. .-+..+ .-.-.+|....+|..+.+.+..+.-. +.=
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG  133 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG  133 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence            344444333  3458899999887765543221111111111 112222 33345677888898888777666532 333


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEe
Q psy3639          87 VGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      +.+..  ++..++.++...++..-
T Consensus       134 WgLt~--d~~~LimsdGsatL~fr  155 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFR  155 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEec
Confidence            54543  45556665555555443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.93  E-value=8.6  Score=24.34  Aligned_cols=45  Identities=11%  Similarity=0.107  Sum_probs=28.9

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCee---eEEe----eCCCCeEEEEEEcC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHE---ICTY----RGHQNVVYAVAFSE   50 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~---~~~~----~~~~~~v~~~~~~~   50 (113)
                      +++.|+++++++ ...|.|++++ ..+..   +..+    .........++++|
T Consensus         7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred             EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence            578899887665 4589999999 34443   2222    12345679999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=83.62  E-value=8.5  Score=24.05  Aligned_cols=59  Identities=12%  Similarity=0.034  Sum_probs=38.1

Q ss_pred             CEEEeeecCCeEEEeeCCC--CeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639          11 QRCLTGSYDRTCKLWDIKS--GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      ++++.|+++|. ++.+...  .+..+.+  +..+|..+...+..+.+++.++....++.+++..
T Consensus        14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~   74 (302)
T smart00036       14 KWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA   74 (302)
T ss_pred             cEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence            68999999985 5555543  2233332  4568899999855444455555555699998743

Unpublished observations.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.62  E-value=8.7  Score=24.18  Aligned_cols=74  Identities=9%  Similarity=0.113  Sum_probs=43.1

Q ss_pred             eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc-cceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-AEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        37 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+....+.++.|+ |+.+.+.+......-.++=-.+|+.+.++.-.. .....+.|..++.++++--.++.+.++.
T Consensus        82 ~g~~~nvS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          82 LGETANVSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             ccccccccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence            3455669999999 555555555555565566556677776664221 1223456655555555544455555553

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.89  E-value=9.8  Score=24.22  Aligned_cols=95  Identities=14%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             CCCC-EEEeeecCCeEEE--eeCCCCeeeEEeeCCCCeEEE-EEEcCCCCCEEEEEeCCC--cEEEE--eCCccccceee
Q psy3639           8 SSPQ-RCLTGSYDRTCKL--WDIKSGHEICTYRGHQNVVYA-VAFSEPYGDKILTGSFDK--TLKLW--ASAKEECIQTY   79 (113)
Q Consensus         8 ~~~~-~~~~~~~d~~v~i--~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~--~v~~w--d~~~~~~~~~~   79 (113)
                      +++. ++.....+|.-.+  ++...+. ...+......|.. +.+.+..+....++..++  .-++|  ++..+..+..+
T Consensus       245 ~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L  323 (353)
T PF00930_consen  245 PDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCL  323 (353)
T ss_dssp             TTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEES
T ss_pred             CCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEec
Confidence            4444 4445556666554  4544444 3455545566655 556744455556666533  44444  55522334444


Q ss_pred             cccccceEEEEEccCCCEEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      .........+.|||++++++..+.
T Consensus       324 T~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  324 TCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             STTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             cCCCCCceEEEECCCCCEEEEEEc
Confidence            433332268999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.83  E-value=10  Score=24.35  Aligned_cols=96  Identities=10%  Similarity=0.132  Sum_probs=49.1

Q ss_pred             ceEcCCCCEEEeee-----------cCC-eEEEeeCCC--Ce--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEE
Q psy3639           4 PRVTSSPQRCLTGS-----------YDR-TCKLWDIKS--GH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL   67 (113)
Q Consensus         4 ~~~~~~~~~~~~~~-----------~d~-~v~i~~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~   67 (113)
                      +++.++++++++..           ..+ .|.+++-..  ++  ....+.........+++. +++ +++ +......++
T Consensus        19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G-lyV-~~~~~i~~~   95 (367)
T TIGR02604        19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG-VYV-ATPPDILFL   95 (367)
T ss_pred             eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC-EEE-eCCCeEEEE
Confidence            46788888777642           223 566665332  22  223443333445778887 556 444 344333333


Q ss_pred             EeCCcc-----c--cc-eeeccc----ccceEEEEEccCCCEEEEee
Q psy3639          68 WASAKE-----E--CI-QTYRGH----SAEVVGVTFSPDQSTFCSCS  102 (113)
Q Consensus        68 wd~~~~-----~--~~-~~~~~~----~~~v~~~~~~~~~~~~~~~~  102 (113)
                      .|....     +  .+ ..+...    ......+.|.|+|.+.++.+
T Consensus        96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            344211     1  11 122221    23466899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3616|consensus

Probab=82.70  E-value=8.4  Score=27.79  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             CCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639          40 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus        40 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      ...++.+.-+ |.+..++.+..||.+++|+....
T Consensus        14 ~e~~~aiqsh-p~~~s~v~~~~d~si~lfn~~~r   46 (1636)
T KOG3616|consen   14 DEFTTAIQSH-PGGQSFVLAHQDGSIILFNFIPR   46 (1636)
T ss_pred             cceeeeeeec-CCCceEEEEecCCcEEEEeeccc
Confidence            3456677666 77899999999999999986443

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.64  E-value=15  Score=26.27  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=47.0

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee----cc---------------cccceEEEEEccCCCEEEEe
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY----RG---------------HSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~----~~---------------~~~~v~~~~~~~~~~~~~~~  101 (113)
                      ..|.++... ..+..++....||+|.++|..+.+.+...    ..               .......++|||.+..++.-
T Consensus       260 ~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  260 KRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CeEEEEEec-ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            456677766 66778899999999999998776443322    00               01133458899999988888


Q ss_pred             ecCCcEE
Q psy3639         102 SMDHTAR  108 (113)
Q Consensus       102 ~~~~~i~  108 (113)
                      ..++.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888754

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG2247|consensus

Probab=82.27  E-value=0.1  Score=34.45  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             EcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC-EEEEEeCCCcEEEEeCCccccce-eecc-c
Q psy3639           6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQ-TYRG-H   82 (113)
Q Consensus         6 ~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~wd~~~~~~~~-~~~~-~   82 (113)
                      +-+.+.-++.++-+..+..||-. ++...... .+....+++|. ..+. .++.+-..+.+.+||+.+...-. .+.+ +
T Consensus        42 w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wD-kegdvlavlAek~~piylwd~n~eytqqLE~gg~~  118 (615)
T KOG2247|consen   42 WRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWD-KEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS  118 (615)
T ss_pred             EecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhc-cccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence            45555557777777777778754 33332322 34455677777 4444 44566678899999986643211 1111 1


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ....  ..|++.+..++.+...|.+.+++
T Consensus       119 s~sl--l~wsKg~~el~ig~~~gn~viyn  145 (615)
T KOG2247|consen  119 SKSL--LAWSKGTPELVIGNNAGNIVIYN  145 (615)
T ss_pred             hHHH--HhhccCCccccccccccceEEEe
Confidence            1122  56676666666666666666664

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.24  E-value=9.7  Score=23.71  Aligned_cols=72  Identities=14%  Similarity=0.183  Sum_probs=44.3

Q ss_pred             CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe------CCCcEEEEeCCccccceeecc-----cccceE
Q psy3639          19 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS------FDKTLKLWASAKEECIQTYRG-----HSAEVV   87 (113)
Q Consensus        19 d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~v~~wd~~~~~~~~~~~~-----~~~~v~   87 (113)
                      -..+++||....+=...-.+-.+.|..+.|. .+.++++.|.      ....+..||..+... ..+..     ..+++.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence            3558999987544332333456789999998 6667777765      234577888876643 12221     235676


Q ss_pred             EEEEc
Q psy3639          88 GVTFS   92 (113)
Q Consensus        88 ~~~~~   92 (113)
                      .+.+.
T Consensus        93 a~~~~   97 (281)
T PF12768_consen   93 ALTFI   97 (281)
T ss_pred             EEEee
Confidence            66663

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.65  E-value=16  Score=25.99  Aligned_cols=59  Identities=12%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCcc--------------------ccceeecccccceEEEEEc--cCCCEEEEeecCCcEEEe
Q psy3639          53 GDKILTGSFDKTLKLWASAKE--------------------ECIQTYRGHSAEVVGVTFS--PDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        53 ~~~~~~~~~~~~v~~wd~~~~--------------------~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~i~~~  110 (113)
                      .+.|+.+..||.|.+|..++-                    ++...+. -....+.++++  ...+++|+++....|.||
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            457889999999999964210                    0112222 24578999998  778888888888888887


Q ss_pred             ec
Q psy3639         111 NT  112 (113)
Q Consensus       111 ~~  112 (113)
                      ..
T Consensus       193 af  194 (717)
T PF08728_consen  193 AF  194 (717)
T ss_pred             EE
Confidence            53

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=81.56  E-value=2.9  Score=17.19  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=14.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCc
Q psy3639          53 GDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus        53 ~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +..++.++.||.+..+|.++
T Consensus        21 ~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   21 GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             TSEEEEE-TTSEEEEEETT-
T ss_pred             CCEEEEEcCCCEEEEEeCCC
Confidence            56788888899999888753

>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein

Probab=81.54  E-value=6.8  Score=21.51  Aligned_cols=64  Identities=17%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCC-eEEE-----------EEEcCCCCCEEEEEeCCCcEEEEeCCccccc
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQN-VVYA-----------VAFSEPYGDKILTGSFDKTLKLWASAKEECI   76 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~v~~-----------~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~   76 (113)
                      +.+....||.+.+++..+++.+..+....+ .+..           -... .+..+.++...||.+.+-|..++..+
T Consensus        43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~-~~~Pf~L~r~~dGrltL~Dp~Tg~~i  118 (135)
T TIGR03054        43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVA-AEPPFRLTRYDNGRLTLTDPATGWSI  118 (135)
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCC-CCCCEEEEEEeCCcEEEEcCCCCcEE
Confidence            455677899999999999999888853322 2210           1122 45667788899999999998888644

In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=81.42  E-value=8.3  Score=28.25  Aligned_cols=92  Identities=13%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEE--------EEeCCCcEEEE----eCCccccceee-----
Q psy3639          17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL--------TGSFDKTLKLW----ASAKEECIQTY-----   79 (113)
Q Consensus        17 ~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~v~~w----d~~~~~~~~~~-----   79 (113)
                      +.|..+.+||...+...+.+......|..+++-.|..+.++        .+.. ..+.++    |-++++ +..+     
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~-~e~~ilgvs~d~~T~E-ls~fnTgl~  176 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATE-KEVMILGVSKDTKTGE-LSLFNTGLV  176 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhh-heeeEEEEEeccccce-eEEEecceE
Confidence            34678889999877766666555555666655434333222        2221 233333    223332 1111     


Q ss_pred             -cccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          80 -RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 -~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                       ...+-.|.++.-+.+|+.+++|..|  +.+|.+
T Consensus       177 vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl  208 (1263)
T COG5308         177 VSVQGINVRCIVSEEDGRIFFGGEND--PNVYEL  208 (1263)
T ss_pred             EeccCceeEEEEeccCCcEEEecCCC--CCeEEE
Confidence             1223456777766789988888777  555543

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=81.17  E-value=19  Score=26.41  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             CCeEEEeeCCCCeeeEEe-eCCCCeEEEEEEcCCCCCEEEE-EeCCC-----cEEEEeCCcc-ccceeecccccceEEEE
Q psy3639          19 DRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGDKILT-GSFDK-----TLKLWASAKE-ECIQTYRGHSAEVVGVT   90 (113)
Q Consensus        19 d~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~-~~~~~-----~v~~wd~~~~-~~~~~~~~~~~~v~~~~   90 (113)
                      .+.+.+-|....... .+ ..+..++..-+|+ |+|+.++- .+..+     .|.+-|+.+. ..+-.+...+..|..-.
T Consensus       328 ~~~L~~~D~dG~n~~-~ve~~~~~~i~sP~~S-PDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwr  405 (912)
T TIGR02171       328 TGNLAYIDYTKGASR-AVEIEDTISVYHPDIS-PDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWR  405 (912)
T ss_pred             CCeEEEEecCCCCce-EEEecCCCceecCcCC-CCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceE
Confidence            346777776533333 33 3367888999999 77887765 34333     3777787654 23344444455555555


Q ss_pred             EccCCCEEEE
Q psy3639          91 FSPDQSTFCS  100 (113)
Q Consensus        91 ~~~~~~~~~~  100 (113)
                      ..++|...++
T Consensus       406 v~e~gdt~iv  415 (912)
T TIGR02171       406 VLENGDTVIV  415 (912)
T ss_pred             ecCCCCeEEE
Confidence            5666665543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PHA02790 Kelch-like protein; Provisional

Probab=80.78  E-value=14  Score=24.72  Aligned_cols=62  Identities=11%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CCCEEEeeecCC-----eEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCC--CcEEEEeCCcc
Q psy3639           9 SPQRCLTGSYDR-----TCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFD--KTLKLWASAKE   73 (113)
Q Consensus         9 ~~~~~~~~~~d~-----~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~v~~wd~~~~   73 (113)
                      ++.++++|+.++     .+..||..++.-  +..+...........   .++...+.|+.+  ..+..||..+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~~iYviGG~~~~~sve~ydp~~n  341 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANNKLYVVGGLPNPTSVERWFHGDA  341 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECCEEEEECCcCCCCceEEEECCCC
Confidence            345667777542     455677765431  111111111111222   336666777653  35777887654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=80.14  E-value=13  Score=23.80  Aligned_cols=70  Identities=14%  Similarity=0.123  Sum_probs=41.3

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCC--CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQ--NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .+..+..+|.+.-.|..++..+.......  ..+..-..- .+++ ++.++.++.+..+|.++++.+.......
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~-~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG-SDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE-eCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            34445667777778888777554332111  112222222 2343 6778888888888988887776666444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-14
2h9l_A	329	Wdr5delta23 Length = 329		5e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-14
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-14
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-12
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-11
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-10
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-09
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-09
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		9e-07
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-06
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		3e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		9e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		5e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		7e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		5e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		6e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		6e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 6   VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
           V  SP  Q   + S D+T KLW+ ++G  + T  GH + V+ VAFS P G  I + S DK
Sbjct: 22  VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDK 79
Query: 64  TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           T+KLW +   + +QT  GHS+ V GV FSPD  T  S S D T +++N
Sbjct: 80  TVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 71  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 129
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 65  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 123
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 67  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 125
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 141
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 146
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 148
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 120
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W     +C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W      C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 1   MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
           +G+  V  +S     ++ S D+T K+WD+ SG  + T +GH N V+   F+ P  + I++
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59  GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           GSFD+++++W      C++T   HS  V  V F+ D S   S S D   RI++T
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTY-----RGHQNVVYAVAFSEPYGDKILTGS 60
           V     R +TGS D+TC LWD+ +G  I  +      GH   V +++ +    +  ++GS
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 61  FDKTLKLW-ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            D T++LW        ++TY GH  ++  V F PD   F + S D T R+F+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 7   TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGDKILTGSFDKTL 65
           T+S  + LT S D TC LWD++SG  + ++ GH   V  +  +    G+  ++G  DK  
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +W     +C+Q +  H ++V  V + P    F S S D T R+++
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
           L+GS D+T K+WD+ +G  + T  GH N V  V F    G  IL+ + DKTL++W    +
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNK 370
Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            C++T   H   V  + F        + S+D T +++ 
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 3   VPRVTSSPQ---RCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGD 54
           V ++ ++PQ     L+ S D+T  +W +       G      RGH + V  V  S   G 
Sbjct: 41  VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQ 99
Query: 55  KILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
             L+GS+D TL+LW        + + GH+ +V+ V FS D     S S D T +++NT+
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 3   VPRVTSSPQ---RCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGD 54
           V ++ ++PQ     L+ S D+T  +W +       G      RGH + V  V  S   G 
Sbjct: 18  VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQ 76
Query: 55  KILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
             L+GS+D TL+LW        + + GH+ +V+ V FS D     S S D T +++NT+
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
           T S D+  K+WD  +G  + TY  H   V    F+      +L TGS D  LKLW   ++
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           EC  T  GH+  V    FSPD     SCS D T R+++ 
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
           T S D+  K+WD  +G  + TY  H   V    F+      +L TGS D  LKLW   ++
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           EC  T  GH+  V    FSPD     SCS D T R+++ 
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           ++S  Q  L+GS+D   +LWD+ +G     + GH   V +VAFS     +I++ S D+T+
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTI 496
Query: 66  KLWASAKEECIQTY----RGHSAEVVGVTFSPD--QSTFCSCSMDHTARIFN 111
           KLW +   EC  T      GH   V  V FSP+  Q T  S S D T +++N
Sbjct: 497 KLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
           +R ++GS D T ++WDI++G  +    GH   V  V +    G ++++G++D  +K+W  
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDP 266
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             E C+ T +GH+  V  + F  D     S S+D + R+++
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 125
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 126 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
           +T+     L+ S+D+T +LWD+ +G     + GH++ V +V   +     I++GS DKT+
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK-ASXIISGSRDKTI 131
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
           K+W + K +C+ T  GH+  V  V   P      D  T  S   D   + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
            + +T S D TC LWDI++G +  T+ GH   V +++ + P     ++G+ D + KLW  
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 224
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +  C QT+ GH +++  + F P+ + F + S D T R+F+
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
            + +T S D TC LWDI++G +  T+ GH   V +++ + P     ++G+ D + KLW  
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +  C QT+ GH +++  + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
            + +T S D TC LWDI++G +  T+ GH   V +++ + P     ++G+ D + KLW  
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +  C QT+ GH +++  + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
            + +T S D TC LWDI++G +  T+ GH   V +++ + P     ++G+ D + KLW  
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +  C QT+ GH +++  + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
            + +T S D TC LWDI++G +  T+ GH   V +++ + P     ++G+ D + KLW  
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +  C QT+ GH +++  + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
           TG+ DR  ++WDI++   +   +GH+  +Y++ +  P GDK+++GS D+T+++W     +
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 75  CIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT 112
           C  T       V  V  SP D     + S+D   R++++
Sbjct: 199 CSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDS 236

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19  DRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-- 73
           DR  ++W  +    IC      GHQ  V  VA+S P G+ + + SFD T  +W   ++  
Sbjct: 37  DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDF 95
Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
           EC+ T  GH  EV  V ++P  +   +CS D +  ++
Sbjct: 96  ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 5   RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
           +VT +P R           + GS D   ++++  +G ++  +  H + + ++A   ++PY
Sbjct: 52  QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53  GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
              +L+GS D T+KLW       + QT+ GH   V+ V F+P D STF S  +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 111 N 111
           +
Sbjct: 169 S 169

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 5   RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
           +VT +P R           + GS D   ++++  +G ++  +  H + + ++A   ++PY
Sbjct: 52  QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53  GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
              +L+GS D T+KLW       + QT+ GH   V+ V F+P D STF S  +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 5   RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
           +VT +P R           + GS D   ++++  +G ++  +  H + + ++A   ++PY
Sbjct: 52  QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53  GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
              +L+GS D T+KLW       + QT+ GH   V+ V F+P D STF S  +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 5   RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
           +VT +P R           + GS D   ++++  +G ++  +  H + + ++A   ++PY
Sbjct: 52  QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53  GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
              +L+GS D T+KLW       + QT+ GH   V+ V F+P D STF S  +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 111 N 111
           +
Sbjct: 169 S 169

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 13  CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY---AVAFSEPYGDKILTGSFDKTLKLWA 69
            ++GS+D+T K+W  K G  +   + H   V+    V+FSE   +K LT S DKT+KLW 
Sbjct: 117 VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE---NKFLTASADKTIKLWQ 171
Query: 70  SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           + K   I+T+ G   +VV      D   F SCS D   ++ +
Sbjct: 172 NDK--VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 1   MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEI--CTY-------RGHQNVVYAVAFSEP 51
           +  P+   +  + ++ S D+T   W          C+Y        GH   V  VA S  
Sbjct: 19  LACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSN- 77
Query: 52  YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            G+  ++ S+D +L+LW     +C   + GH+ +V+ V FSPD     S   D+  R++N
Sbjct: 78  NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW----- 68
           ++GS D T +LWDI+ G  +    GH+ +V  + F      +I++G++D  +K+W     
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLVAA 366
Query: 69  ----ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
               A A   C++T   HS  V  + F  D+    S S D T  I++ +
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 13  CLTGSYDRTCKLWDI----KSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTL 65
            ++GS D+T  +W +    ++G+    ++   GH + V  +A S+     I + S+DKTL
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI-SSSWDKTL 100
Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           +LW        + + GH +EV  V FSPD     S   +   +++N +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 15  TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
           TGS DR  KL  +K       ++     H+  + +VA+  P+   +  GSFD T+ +WA 
Sbjct: 29  TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPHTSLLAAGSFDSTVSIWAK 87
Query: 71  AKE-------ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            +        + +    GH  EV GV +S D     +CS D +  I+ T
Sbjct: 88  EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 14  LTGSYDRTCKLWDIKSGHEI-----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           L  S     +LW++     +     C Y  H ++V  V+     G + ++GS D  +K+W
Sbjct: 97  LVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLS-SGTQAVSGSKDICIKVW 154
Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNT 112
             A++  + +YR H+A+V  V  SP + S F SCS D+   +++T
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAK 72
           ++GS DRT ++WDIK G     + GH + V  +   E    K I+TGS D TL +W   K
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 73  EECIQTYRGHSAEVVGVTFSPDQSTF 98
           E  +  + G   +   V  +P+++ +
Sbjct: 237 ESSVPDH-GEEHDYPLVFHTPEENPY 261

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14  LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAK 72
           ++GS DRT ++WDIK G     + GH + V  +   E    K I+TGS D TL +W   K
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 73  EECIQTYRGHSAEVVGVTFSPDQSTF 98
           E  +  + G   +   V  +P+++ +
Sbjct: 237 ESSVPDH-GEEHDYPLVFHTPEENPY 261

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 12  RCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLW 68
           R  T S DR+ K++D+++G +  I   RGH+  V+ VA++ P YG+ + + S+D+ + +W
Sbjct: 27  RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 69  --ASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSC 101
              +   E    + GH + V  V ++P D     +C
Sbjct: 87  REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16  GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
           G+ DR  ++W++ SG  +     H  V  ++ +S  Y + I    F +  L +W      
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 275
Query: 75  CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
            +   +GH++ V+ +T SPD +T  S + D T R++
Sbjct: 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16  GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
           G+ DR  ++W++ SG  +     H  V  ++ +S  Y + I    F +  L +W      
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 355
Query: 75  CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
            +   +GH++ V+ +T SPD +T  S + D T R++
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16  GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
           G+ DR  ++W++ SG  +     H  V  ++ +S  Y + I    F +  L +W      
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 366
Query: 75  CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
            +   +GH++ V+ +T SPD +T  S + D T R++
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ T+  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETILASSGTDRRLNVWDLSK 351
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +I+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ T+  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETILASSGTDRRLNVWDLSK 351
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +I+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
           Q   TG++     ++ ++SG +  +       + ++A+S P G  + +G+ D  + ++  
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDI 193
Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           A  + + T  GH+  +  +TFSPD     + S D   +I++ 
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ ++  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLNVWDLSK 349
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +++
Sbjct: 350 IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ ++  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 353
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +++
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ ++  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 357
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +++
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15  TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
           TGS D+T  LWD+++   ++ ++  H++ ++ V +S P+ + IL  S  D+ L +W  +K
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 355
Query: 73  --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
                          E +  + GH+A++   +++P++    CS S D+  +++
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
           S P R ++GS D T  +++        T+  H   V++V ++ P G    +   D T+ L
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVL 216
Query: 68  WASAKEECIQTYR-------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +          +         HS  V G+T+SPD +   S S D T +I+N
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S +  ++ S D   K+W +K G    T  GH+  V  +A  +  G  +L+ S D T++LW
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLW 205
Query: 69  ASAKEECIQTY 79
                  I T+
Sbjct: 206 ECGTGTTIHTF 216

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S +  ++ S D   K+W +K G    T  GH+  V  +A  +  G  +L+ S D T++LW
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLW 208
Query: 69  ASAKEECIQTY 79
                  I T+
Sbjct: 209 ECGTGTTIHTF 219

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 12  RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           +  T S D+T K+WD+ S   I   +    V        P    ++TGS+DKTLK W
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 33  ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGV 89
           I  Y GH N +  + F     + +L+ S D  L+LW    +  +  +    GH  EV+  
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 90  TFSPDQSTFCSCSMDHTARIF 110
            +        SC MDH+ +++
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLW 224

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 33  ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGV 89
           I  Y GH N +  + F     + +L+ S D  L+LW    +  +  +    GH  EV+  
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 90  TFSPDQSTFCSCSMDHTARIF 110
            +        SC MDH+ +++
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLW 183

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36  YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
           Y GH N +  + F     + +L+ S D  L+LW    +  +  +    GH  EV+   + 
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 93  PDQSTFCSCSMDHTARIF 110
                  SC MDH+ +++
Sbjct: 171 LLGEKIMSCGMDHSLKLW 188

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36  YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
           Y GH N +  + F     + +L+ S D  L+LW    +  +  +    GH  EV+   + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 93  PDQSTFCSCSMDHTARIF 110
                  SC MDH+ +++
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36  YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
           Y GH N +  + F     + +L+ S D  L+LW    +  +  +    GH  EV+   + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 93  PDQSTFCSCSMDHTARIF 110
                  SC MDH+ +++
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVA-FSEPYGDKILTGSFDK 63
           S +  L  S     +LW+I     +   +     H ++V  ++ FS+  G + ++G  D 
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDF 161
Query: 64  TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST-FCSCSMDHTARIFNT 112
           ++K+W  +++  +++Y  HS+EV  V   P + T F SC  D    +++T
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 2e-22
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
                 L+GS D+T K+WD+ +G  + T  GH N V  V F    G  IL+ + DKTL++
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRV 273

Query: 68  WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
           W    + C++T   H   V  + F        + S+D T +++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 6e-14
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 1   MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF------------ 48
           + + R         + S D+T ++W + +       R H++VV  +++            
Sbjct: 146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 205

Query: 49  -------SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC 101
                  S   G  +L+GS DKT+K+W  +   C+ T  GH   V GV F        SC
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 102 SMDHTARIFNT 112
           + D T R+++ 
Sbjct: 266 ADDKTLRVWDY 276

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 3e-11
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 23  KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
           K W  +   E     GH++ V  V F  P    +++ S D T+K+W     +  +T +GH
Sbjct: 1   KEWIPRPP-EKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 83  SAEVVGVTFSPDQSTFCSCSMDH 105
           +  V  ++F        SCS D 
Sbjct: 59  TDSVQDISFDHSGKLLASCSADM 81

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-09
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 41/143 (28%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-------------------- 50
              ++ S D T K+WD ++G    T +GH + V  ++F                      
Sbjct: 30  SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89

Query: 51  ---------------------PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV 89
                                P GD I++ S DKT+K+W      C++T+ GH   V  V
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149

Query: 90  TFSPDQSTFCSCSMDHTARIFNT 112
             + D +   SCS D T R++  
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
              ++ S D+T K+W++++G+ + T+ GH+  V  V  +   G  I + S D+T+++W  
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 172

Query: 71  AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           A +EC    R H   V  ++++P+ S         +    +
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 9e-06
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 66  KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           K W     E      GH + V  V F P  S   S S D T ++++ 
Sbjct: 1   KEWIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.1 bits (175), Expect = 7e-17
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV--VYAVAFSEPYGDKILTGSFDKTLKLW 68
               TGS D TC+L+D+++  E+ TY     +  + +V+FS   G  +L G  D    +W
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVW 297

Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            + K +      GH   V  +  + D     + S D   +I+N
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 5e-15
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL--W 68
           +  ++G+ D + KLWD++ G    T+ GH++ + A+ F  P G+   TGS D T +L   
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDL 255

Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            + +E    ++      +  V+FS       +   D    +++ 
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 3e-09
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 18  YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ 77
            D TC LWDI++G +  T+ GH   V ++    P     ++G+ D + KLW   +  C Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVREGMCRQ 220

Query: 78  TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           T+ GH +++  + F P+ + F + S D T R+F+  
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 1e-08
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 35  TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
           T RGH   +YA+ +       +++ S D  L +W S     +      S+ V+   ++P 
Sbjct: 50  TLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108

Query: 95  QSTFCSCSMDHTARIFN 111
            +      +D+   I+N
Sbjct: 109 GNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 72  KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           +    +T RGH A++  + +  D     S S D    I+++ 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 6e-15
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 19/125 (15%)

Query: 5   RVTSSPQRCLTGSYDRTCKLWDIKSGHEI------------CTYRGHQNVVYAVAFSEPY 52
             T   Q  ++GS DR+ KLW++++ +               TY GH++ V +VA +   
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QN 319

Query: 53  GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV------TFSPDQSTFCSCSMDHT 106
            + IL+GS D+ +  W       +   +GH   V+ V      +  P+ + F + S D  
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 107 ARIFN 111
           ARI+ 
Sbjct: 380 ARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 1e-10
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 20/124 (16%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEICTY-------RGHQNVVYAVAFSEPYGDKILTGS 60
              +    GS DR  ++WD ++G  +           GH++ VY+V F+   G  +++GS
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGS 273

Query: 61  FDKTLKLW------------ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTAR 108
            D+++KLW                  C  TY GH   V+ V  + +     S S D    
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 109 IFNT 112
            ++ 
Sbjct: 334 FWDK 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 5e-07
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 24/122 (19%)

Query: 14  LTGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
           L    +    L++         E+     H +VV  V FS   G+ + TG  +KT +++ 
Sbjct: 32  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLATGC-NKTTQVYR 89

Query: 70  SAKEECIQTYRGHSAE------------------VVGVTFSPDQSTFCSCSMDHTARIFN 111
            +    +      SA                   +  V FSPD     + + D   RI++
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

Query: 112 TM 113
             
Sbjct: 150 IE 151

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 6e-07
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           S  + ++GS DRT ++WD+++G    T      V          G  I  GS D+ +++W
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP-GDGKYIAAGSLDRAVRVW 232

Query: 69  ASAKEECIQTY-------RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            S     ++          GH   V  V F+ D  +  S S+D + +++N
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 1e-12
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 25  WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
           W           +GH + V         G++I++GS D TLK+W++   +C++T  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 85  EVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
            V       +     S           T 
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETG 87

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 2e-12
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 3   VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
              +       ++G+ D T K+WDIK+G  + T +G      AV   +   + ++T S D
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

Query: 63  KTLKLWASAKEECIQTYR-----GHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
            T+KLW     E I+        G    V  +  S  +      S + T    
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-09
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 10  PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
            +R ++G+YD   K+WD ++   + T +GH N VY++ F    G  +++GS D ++++W 
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWD 203

Query: 70  SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
                CI T  GH +   G+    +     S + D T +I++  
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-09
 Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
                ++GS D + ++WD+++G+ I T  GHQ++   +       + +++G+ D T+K+W
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIW 242

Query: 69  ASAKEECIQTYRGHSAEVV-GVTFSPDQSTFCSCSMDHTARIFNT 112
                +C+QT +G +           +++   + S D T ++++ 
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-08
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 6  VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 52
          +     R ++GS D T K+W   +G  + T  GH   V++    +  
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 3   VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
           V  +    +R ++GS D T ++WDI++G  +    GH     AV   +  G ++++G++D
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYD 156

Query: 63  KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
             +K+W    E C+ T +GH+      +   D     S S+D + R+++
Sbjct: 157 FMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWD 203

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 7e-12
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 35  TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW--ASAKEECIQTYRGHSAEVVGVTFS 92
            +      +   A++     +I     +  + ++  +  K   +   + H+ +V GV ++
Sbjct: 2   YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 93  PDQSTFCSCSMDHTARIFNTM 113
           PD +   +C  D  A ++   
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLK 81

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 8e-09
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 11 QRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
           +      +    +++       ++   + H   V  V ++ P  ++I+T   D+   +W
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 9e-08
 Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
            +    +   +D    L+   S     ++ G  +V    +       +       K    
Sbjct: 252 ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311

Query: 68  WASAKEECIQTYRGHSAEVVGVTFSPD----QSTFCSCSMDHTARIFN 111
            ++A    + +   H   V  ++         S FC+  MD    I++
Sbjct: 312 GSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 10/76 (13%)

Query: 15  TGSYDRTCKLWDIK------SGHEICTYRGHQNVVYAVAFSEPYGD---KILTGSFDKTL 65
             +     +  D K      +         H+N V  ++          +  T   D  +
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353

Query: 66  KLW-ASAKEECIQTYR 80
            +W   + E  ++  +
Sbjct: 354 SIWDVRSLESALKDLK 369

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-11
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
                 L    + +       +  +      H++ V ++ F+   G   ++   D  L  
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNA 291

Query: 68  WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           W +     I      S+ V+    S D     + S D  A ++  +
Sbjct: 292 WRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 7/81 (8%)

Query: 38  GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-----YRGHSAEVVGVTFS 92
            H  VV AV  S      + TG     +K+W  +                   +      
Sbjct: 49  NHGEVVCAVTIS-NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 93  PDQSTFCSCSMDHTARIFNTM 113
           PD  T        T  I++  
Sbjct: 107 PDGCTLIVGGEASTLSIWDLA 127

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 5e-11
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 1   MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
            G+  +    +  ++GS D T +LWDI+ G  +    GH+ +V           +I++G+
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGA 235

Query: 61  FDKTLKLW---------ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +D  +K+W         A A   C++T   HS  V  + F        S S D T  I++
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 31  HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVT 90
             I         VY + +      KI++G  D T+K+W     EC +   GH+  V+ + 
Sbjct: 6   QRIHCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 91  FSPDQSTFCSCSMDH 105
           +        S     
Sbjct: 63  YDERVIITGSSDSTV 77

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-07
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 9   SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
             +  ++ S DRT K+W+  +   + T  GH+  +  + +       +++GS D T++LW
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 203

Query: 69  ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
                 C++   GH  E +      D     S + D   ++++ 
Sbjct: 204 DIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDL 245

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-06
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 2  GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 52
          GV  +    Q+ ++G  D T K+WD  +        GH   V  + + E  
Sbjct: 17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 20  RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY 79
           R+  +WD+ S  +I   R       AV   +     I++ S D+T+K+W ++  E ++T 
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174

Query: 80  RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            GH   +  + +        S S D+T R+++ 
Sbjct: 175 NGHKRGIACLQYRDRL--VVSGSSDNTIRLWDI 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-09
 Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR------------GHQNVVYAVAFSEPYG 53
           V++     ++ S D   K+WD K                      H +V+ A+       
Sbjct: 20  VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79

Query: 54  DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
             + T SF   L  +   +E+  +       +++                 +   + + +
Sbjct: 80  CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-07
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 35  TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC------IQTYRGHSAEVVG 88
             + H   +++V+    +    ++ S D  LK+W +   +         ++  H + +  
Sbjct: 9   AGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 89  VTF-------SPDQSTFCSCSMDHTARIFNT 112
           V         + +     + S       +  
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRI 96

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-07
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 25  WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
               S         H + V +++F+   G+ + +  +D  L+ W    +E I T   H  
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 85  EV----VGVTFSPDQSTFCSCSMDHTARI 109
           ++      +       +     +     +
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGVFDVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 20/104 (19%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY----AVAFSEPYGDKILTGSFDKTLK 66
           +   +  +D   + WD+K+   I T   H + +      +A    +GD +          
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD-EHGDSLAEPGVFDVKF 360

Query: 67  LWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
           L    +                   +    + C   +D + R F
Sbjct: 361 LKKGWR---------------SGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 9e-04
 Identities = 13/143 (9%), Positives = 31/143 (21%), Gaps = 33/143 (23%)

Query: 3   VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------VYAVAFS--- 49
           + R         T S+      + I    E       +             +A+ +    
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 50  -EPYGDKILTGSFDKTLKLW------------------ASAKEECIQTYRGHSAEVVGVT 90
                 +++      T  +W                      +  +++    S     V 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 91  FSPDQSTFCSCSMDHTARIFNTM 113
            S       +   + T +I    
Sbjct: 192 ISER-GLIATGFNNGTVQISELS 213

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 5e-09
 Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS--FDK 63
           +       +TG+ D+  +++D  +   +    GH   V+A+ ++   G  +++GS     
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV 76

Query: 64  TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
            +          +      +   + +    +     + S D+T  ++ 
Sbjct: 77  RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 8e-07
 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 8   SSPQRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
                 L    +    +++++SG  +        + +++V F       +     D    
Sbjct: 291 YVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAVEKDGQSF 348

Query: 67  LW 68
           L 
Sbjct: 349 LE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-05
 Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 3/89 (3%)

Query: 22  CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYR 80
             +    +      +  H   + A+       D IL    +    ++     + +     
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLVHANIL 321

Query: 81  GHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
             + ++  V F    +   +   D  + +
Sbjct: 322 KDADQIWSVNFKGK-TLVAAVEKDGQSFL 349

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 7e-09
 Identities = 6/79 (7%), Positives = 22/79 (27%), Gaps = 4/79 (5%)

Query: 38  GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVVGVTFSPD 94
             ++ +  +    P    +L  S+D +L ++    +           +   ++   F  +
Sbjct: 9   APKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 95  QSTFCSCSMDHTARIFNTM 113
                         +   +
Sbjct: 68  TDLQIYVGTVQGEILKVDL 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 10  PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
            +   T   D     W++++  +I  +         V  +    + +   + D T K   
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIA-CSDNILCLATSDDTFKTN- 319

Query: 70  SAKEECIQTYRGHSAEV 86
                  QT   +++ +
Sbjct: 320 ---AAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-07
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 23  KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
           K +  +              V ++ FS P    + T   D  +  W     + I+ +   
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 83  SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           + + V V  +   +  C  + D T +    +
Sbjct: 293 NEDSV-VKIACSDNILCLATSDDTFKTNAAI 322

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-06
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 3/75 (4%)

Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
             L  S+D +  ++      +         +++ +    F +    +I  G+    +  
Sbjct: 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83

Query: 68 WASAKEECIQTYRGH 82
                   Q    +
Sbjct: 84 VDLIGSPSFQALTNN 98

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 5e-05
 Identities = 5/39 (12%), Positives = 14/39 (35%)

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           + +Q  +     +  +   P +S     S D +  ++  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 18/121 (14%)

Query: 10  PQRCLTGSYDRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
             R + G  +   + + +    +        G +  +  VA      +     S D  + 
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 67  LWASAKEECIQT---------------YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           +     +                        +  V  + FSP      +   D     +N
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 112 T 112
            
Sbjct: 280 L 280

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 8e-09
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY--AVAFSEPYGDKILTGSFDKTLKLW 68
           Q+  T   D T ++WD+ +   +  +   +  +    V        +I++ S D TL  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 9e-06
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 3/90 (3%)

Query: 25  WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
                  +              A S     K  T   D T+++W     +C+Q +     
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 85  EVVGVTFS---PDQSTFCSCSMDHTARIFN 111
           ++                S S+D T   + 
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 3e-08
 Identities = 7/58 (12%), Positives = 20/58 (34%)

Query: 11  QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
            +  + S D+T K+W++ +     T      +             +++ S +  +   
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 6e-07
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 40  QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFC 99
           +     +  + P GDKI   +   ++           + Y  HS +      SP      
Sbjct: 17  RGTAVVLGNT-PAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74

Query: 100 SCSMDHTARIFNTM 113
           S  +    RI++T 
Sbjct: 75  SGDVHGNVRIWDTT 88

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-06
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 10  PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE------PYGDKILTGSFDK 63
                +   D T  L++   G +   +        A + S       P G KI + S DK
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 64  TLKLWASAKEECIQTYRGHSAEVVGVT-FSPDQSTFCSCSMDHTARIFN 111
           T+K+W  A  +  +T    +            +    S S +      N
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 6e-06
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 19  DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECI 76
             +     + S  +   Y  H +       S P G    +G     +++W + +      
Sbjct: 37  GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILK 95

Query: 77  QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
            T    S  V  +++  +     +            +
Sbjct: 96  TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 4e-08
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 1   MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYGDKILTG 59
            G            TGS D    ++ +K   + I     H++ V  + +       +++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSS 275

Query: 60  SFDKTLKLW 68
             D  +K W
Sbjct: 276 GADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 1e-07
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 2/97 (2%)

Query: 18  YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW-ASAKEECI 76
             R  K                +         E   D + TGS D  + ++      + I
Sbjct: 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 251

Query: 77  QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           +    H   V  + +    ST  S   D   + +N +
Sbjct: 252 KALNAHKDGVNNLLWETP-STLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 1e-06
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 33  ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFS 92
           + T  GH   + A+  +      +++GS+D  +  W+S+       ++ HS  +V +  S
Sbjct: 6   LKTISGHNKGITALTVN-----PLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55

Query: 93  PDQSTFCSCSMDHTARIFNTM 113
             Q        D       T 
Sbjct: 56  KAQEYSSISWDDTLKVNGITK 76

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (74), Expect = 0.003
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 72  KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            +E ++T  GH+  +  +T +P      S S D     +++
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS 38

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 5e-08
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 6   VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
              +P +          + +D++    I       +  Y+V  S   G  +  G     L
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVS-TDGSTVWLGGALGDL 303

Query: 66  KLWASAKEECIQTYR----GHSAEVVGVTFSPD 94
             + +   E             +      F+ D
Sbjct: 304 AAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 8e-06
 Identities = 12/107 (11%), Positives = 23/107 (21%), Gaps = 9/107 (8%)

Query: 14  LTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWAS 70
           L  +      + D +                      + P G     T +  ++L     
Sbjct: 5   LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDL 63

Query: 71  AKEECIQTYRGHSAEVVG-----VTFSPDQSTFCSCSMDHTARIFNT 112
              E +      + E           SPD  T           + + 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 8e-06
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%)

Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
             +Y       D+++G          +V Y      P   +         L+ +   K  
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNA 271

Query: 75  CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            I+           V  S D ST            ++ 
Sbjct: 272 SIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 54  DKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVVGVTFSPDQST-FCSCSMDHTARIF 110
           D IL  +    L +  + K    +      A    +    +P     + + +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 111 NT 112
           + 
Sbjct: 62  DL 63

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 2/108 (1%)

Query: 5   RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
           R     Q   T          D+K+G            +Y      P     + G  +  
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R 273

Query: 65  LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
           L  +   + + I+           V F             +   +FN 
Sbjct: 274 LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 8/116 (6%), Positives = 24/116 (20%), Gaps = 9/116 (7%)

Query: 4   PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKIL-TGSF 61
           P + +  +  +  +Y     + D+ S     +     +        + P         + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-PDNRTAYVLNNH 60

Query: 62  DKTLKLWASAKEECI------QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
              +        +                 +     SPD     +          +
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-07
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL--TGSFDKTLKLWASAK 72
             +  R   + D K+G  +  +     +  ++  S      +L    + DKTL +  +  
Sbjct: 275 HKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVS-QDEKPLLYALSTGDKTLYIHDAES 332

Query: 73  EECIQTYRGHSAEVVGVTFSPD 94
            E +++          +T +  
Sbjct: 333 GEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 6e-05
 Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 24/134 (17%)

Query: 2   GVPRVTSSPQRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAF----------- 48
             P  +    R +  +Y       D+ SG    +           A  +           
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 49  --------SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST--F 98
                        D+    +  + + +  +   E +  +      +  +  S D+    +
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLY 316

Query: 99  CSCSMDHTARIFNT 112
              + D T  I + 
Sbjct: 317 ALSTGDKTLYIHDA 330

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-07
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 35  TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAEVVGVTFSP 93
              GH   + A++ S   G  + +   +  +  W  +     + +   H+  + G+  + 
Sbjct: 7   VRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 94  DQSTFCSCSMDH 105
               F     DH
Sbjct: 66  KGDLFTVSWDDH 77

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 4e-06
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 2/104 (1%)

Query: 10  PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW- 68
                  S                           A     P   ++ TGS D ++ +W 
Sbjct: 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252

Query: 69  -ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
                +  I     H+   V      +++T  S   D   + +N
Sbjct: 253 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-05
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
              Q   GH+  +  ++ S D  T  S   +     ++ 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.2 bits (76), Expect = 0.002
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 2/111 (1%)

Query: 5   RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFD- 62
             ++  +   +   +     WDI +G     +   H  ++  +  +       ++     
Sbjct: 19  SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78

Query: 63  KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
           K +    S  +         S++ +G+  S D     +    H A   +  
Sbjct: 79  KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 5e-07
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
                     +D+K+          +N +  +  S      ++    D  +  +   K E
Sbjct: 293 GAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEKPE 347

Query: 75  CIQT 78
             +T
Sbjct: 348 DERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 6e-07
 Identities = 8/88 (9%), Positives = 15/88 (17%), Gaps = 5/88 (5%)

Query: 25  WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
            D      I        +         +            L  +        +       
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKT----RKVTEVKN 315

Query: 85  EVVGVTFSPDQSTFCSCSMDHTARIFNT 112
            +  +  S D+ T      D     F  
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 3/68 (4%)

Query: 43  VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
            +A  FS   GD I   S  +   +   +    ++        +  V    D        
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHG 61

Query: 103 MDHTARIF 110
                 + 
Sbjct: 62  TREGDFLG 69

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (82), Expect = 3e-04
 Identities = 5/97 (5%), Positives = 16/97 (16%), Gaps = 9/97 (9%)

Query: 17  SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA----- 71
              +   ++D++          + +        +     +   S+               
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAP--AFDADSKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 72  --KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHT 106
                                  P   T  +   D  
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 15  TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
             S      + D+ S     T     N       S P G K+    +    + +  +A  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVIS-PDGTKVYVANAHSNDVSIIDTATN 64

Query: 74  ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
             I T    S+          +  + +     T  + +T 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 1/54 (1%)

Query: 58  TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
           T      + L     ++ ++      A V     S           D    + +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.5
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.4
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.25
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.22
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.19
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.18
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.07
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.66
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.61
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.56
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.18
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.09
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.94
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.55
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.46
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.48
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.43
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.21
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.57
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.29
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.9
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	82.26

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-25  Score=135.66  Aligned_cols=109  Identities=19%  Similarity=0.324  Sum_probs=94.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEe------eCCCCeEEEEEEcCCCCCEEEEEeCCCc---EEEEeCCcc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTY------RGHQNVVYAVAFSEPYGDKILTGSFDKT---LKLWASAKE   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~---v~~wd~~~~   73 (113)
                      +++++|++ ++++|+.|+.|++||+.+++.+..+      .+|..+|.+++|+ |+++++++++.|++   |++||+.++
T Consensus       189 ~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc-cccceeeeecCCCCcceeeecccccc
Confidence            46778876 8899999999999999998876544      4688999999999 78999999998874   899999988


Q ss_pred             ccceee-------------cccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          74 ECIQTY-------------RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        74 ~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +.+..+             .+|...|.+++|+|++++|++++.|++|++||++
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            766655             3688899999999999999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.4e-25  Score=131.17  Aligned_cols=109  Identities=26%  Similarity=0.386  Sum_probs=100.0

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      ..++++|+++++++++.|+.+++|+.........+.  .+...+..++|+ +++.++++++.||.|++||+.+++.+..+
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC-SSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC-CCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence            356789999999999999999999999888776653  466779999999 78999999999999999999999999999


Q ss_pred             cccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+|..+|.+++|+|++.+|++++.||.|++||
T Consensus       309 ~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.7e-25  Score=127.70  Aligned_cols=104  Identities=31%  Similarity=0.527  Sum_probs=96.9

Q ss_pred             cCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce
Q psy3639           7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV   86 (113)
Q Consensus         7 ~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v   86 (113)
                      ...+..+++++.|+.|++|+..+++.+..+.+|...+.+++++ +++.++++++.||.|++||+++++.+..+.+|...|
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             ccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEC-CCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            3456789999999999999999999999999999999999999 788999999999999999999999999999999999


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEee
Q psy3639          87 VGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .+++|+|++++|++++.|++|++||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.1e-25  Score=132.55  Aligned_cols=111  Identities=12%  Similarity=0.204  Sum_probs=98.6

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCe--eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc--cc
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--CI   76 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~--~~   76 (113)
                      +.+++|+|+++++++++.|+.|++|+..+++  .+..+++|..+|.+++|+ |+++++++++.|+.|++||+.++.  ..
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs-p~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC-CCCCEEEEEECCCeEEEEeecccccccc
Confidence            4678999999999999999999999998765  567788999999999999 788999999999999999987654  34


Q ss_pred             eeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..+..+...+.+++|+|+++.+++++.++.+++|++
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeeee
Confidence            455667889999999999999999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=2.7e-24  Score=127.10  Aligned_cols=110  Identities=26%  Similarity=0.387  Sum_probs=98.3

Q ss_pred             cceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-
Q psy3639           3 VPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-   80 (113)
Q Consensus         3 ~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-   80 (113)
                      .++|+|+++ .+++++.|+.|++||.++++....+..|..+|.++.++ |++.++++++.|+.+++||..++..+..+. 
T Consensus       151 ~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~  229 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFED  229 (311)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred             cccccccceeeecccccccccccccccccccccccccccccccccccC-ccccccccccccccccccccccccccccccc
Confidence            457899887 57889999999999999999999999999999999999 789999999999999999998876555443 


Q ss_pred             ------ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 ------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                            +|...|.+++|+|++++|++++.|+.|++||++
T Consensus       230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence                  467889999999999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8e-24  Score=125.80  Aligned_cols=107  Identities=15%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .++++|+++++++++.|+.+++|++.+++.. ....|...+.+++|+ ++++.+++++.||.|++||..+++.+..+. +
T Consensus       229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s-~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~  305 (337)
T d1gxra_         229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E  305 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             EEEEcccccccceeccccccccccccccccc-cccccccccceEEEC-CCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C
Confidence            3568999999999999999999999887765 445699999999999 788999999999999999999998887766 6


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...|.+++|+|++++|++++.|+.|++||+
T Consensus       306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            788999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.8e-23  Score=123.10  Aligned_cols=111  Identities=21%  Similarity=0.405  Sum_probs=93.2

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEe------------
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA------------   69 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd------------   69 (113)
                      .+++|+|++++|++|+.||.|++||..+++.+..+..|..+|.+++|+ +++.++++++.|+.+++|+            
T Consensus        59 ~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  137 (340)
T d1tbga_          59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSR  137 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEEC-TTSSEEEEEETTCCEEEEESSSSCSCCCEEE
T ss_pred             EEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEee-ccceeeeeecccceeecccccccccccccce
Confidence            457899999999999999999999999999999999999999999999 6667777777777766665            


Q ss_pred             ---------------------------------------------------------------------------CCccc
Q psy3639          70 ---------------------------------------------------------------------------SAKEE   74 (113)
Q Consensus        70 ---------------------------------------------------------------------------~~~~~   74 (113)
                                                                                                 +++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~  217 (340)
T d1tbga_         138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc
Confidence                                                                                       33333


Q ss_pred             cceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+..+.+|...|.+++|+|+++++++++.|+.+++||++
T Consensus       218 ~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~  256 (340)
T d1tbga_         218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec
Confidence            344455678889999999999999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.2e-24  Score=126.96  Aligned_cols=110  Identities=30%  Similarity=0.517  Sum_probs=95.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCe------------eeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGH------------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS   70 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~   70 (113)
                      .++++|+++++++++.|+.+++||+.++.            .......|...+.+++|+ +++.++++++.||.|++||+
T Consensus       259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~dg~i~vwd~  337 (388)
T d1erja_         259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDK  337 (388)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC-GGGCEEEEEETTSEEEEEET
T ss_pred             EEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEEC-CCCCEEEEEeCCCEEEEEEC
Confidence            45788999999999999999999987543            234455688999999999 78999999999999999999


Q ss_pred             CccccceeecccccceEEEEE------ccCCCEEEEeecCCcEEEeecC
Q psy3639          71 AKEECIQTYRGHSAEVVGVTF------SPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        71 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ++++.+.++.+|...|.++++      +|++.+|++++.||.|++|+++
T Consensus       338 ~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999998875      5788999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=3e-23  Score=122.59  Aligned_cols=111  Identities=17%  Similarity=0.255  Sum_probs=97.4

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeC--CCcEEEEeCCccccce
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQ   77 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~v~~wd~~~~~~~~   77 (113)
                      .+++|+|+++++++|+.|+.|++||+.++..  ...+..|..+|.+++|+ +++..+++++.  +..+++|+.++++...
T Consensus        62 ~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~  140 (311)
T d1nr0a1          62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNG  140 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred             EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccc-ccccccccccccccccccccccccccccc
Confidence            4678999999999999999999999987754  35677899999999999 77888888876  4569999999999889


Q ss_pred             eecccccceEEEEEccCCCE-EEEeecCCcEEEeecC
Q psy3639          78 TYRGHSAEVVGVTFSPDQST-FCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~  113 (113)
                      .+.+|...|.+++|+|++++ +++++.|+.|++||++
T Consensus       141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1         141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccceeeeccccccccccccccc
Confidence            99999999999999999885 7789999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.3e-23  Score=119.01  Aligned_cols=112  Identities=31%  Similarity=0.507  Sum_probs=99.7

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC-------------------------------
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-------------------------------   50 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------------------   50 (113)
                      .+++|+|+++++++|+.|+.|++||+.+++.+.++.+|...|.+++++|                               
T Consensus        21 ~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (317)
T d1vyhc1          21 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH  100 (317)
T ss_dssp             EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccc
Confidence            4578899999999999999999999999988888888888888877774                               


Q ss_pred             ----------CCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          51 ----------PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        51 ----------~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                                +++..+++++.|+.+++||+++++.+..+..+...+..++|+|++.++++++.|+.+++|+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1         101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence                      445678888999999999999998888888898999999999999999999999999999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5e-23  Score=119.67  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=94.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeE-EeeCCCCeEEEEEEcC---------CCCCEEEEEeCCCcEEEEeCCc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE---------PYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      .++++|+++++++++.|+.|++||+.+++... .+..|..++.+++|+|         .++.++++++.|+.|++||++.
T Consensus       167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             EEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            56789999999999999999999999887654 4577999999999985         3356899999999999999876


Q ss_pred             -cccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          73 -EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        73 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                       .+.+..+.+|...|.+++|+|++ .+++++.|+.|++|++
T Consensus       247 ~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             45667777899999999999976 5889999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.4e-22  Score=119.85  Aligned_cols=111  Identities=20%  Similarity=0.429  Sum_probs=99.7

Q ss_pred             CCcceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee------------------CCCCeEEEEEEcCCCCCEEEEEeCC
Q psy3639           1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR------------------GHQNVVYAVAFSEPYGDKILTGSFD   62 (113)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~   62 (113)
                      +.+++|+|++++|++|+ |+.|++||+.+++.+..+.                  .|...|.+++|+ +++.++++++.|
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~d  142 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAED  142 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC-CCCCcceecccc
Confidence            46788999999999987 7899999999887766553                  356679999999 789999999999


Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.|++||...++.+....+|...|.++++++++..+++++.++.+++||++
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence            999999999999899999999999999999999999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=4.8e-22  Score=115.95  Aligned_cols=110  Identities=18%  Similarity=0.276  Sum_probs=95.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeE-EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc---ee
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI---QT   78 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~---~~   78 (113)
                      +++++|+++++++++.|+.+++||+.+++... ....|...|.+++++ +++..+++++.++.+++||+.++..+   ..
T Consensus       141 ~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         141 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            46789999999999999999999998776543 334588999999999 78899999999999999998876433   45


Q ss_pred             ecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +..|...|.+++|+|+++++++++.|+.|++||++
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            56678899999999999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-21  Score=115.70  Aligned_cols=108  Identities=17%  Similarity=0.330  Sum_probs=97.3

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      .++++++++.+++++.|+.+++||+++++.+..+. +...+.+++++ +++..+++++.|+.+++||++..+.. ....|
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~  264 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH  264 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEE-EECCC
T ss_pred             cccccccccccccccccccccccccccceeecccc-cccceEEEEEc-ccccccceeccccccccccccccccc-ccccc
Confidence            45788999999999999999999999999887776 88899999999 78899999999999999999888754 44558


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ...+.+++|+|++++|++++.|+.|++||++
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            8899999999999999999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=8.7e-22  Score=118.35  Aligned_cols=110  Identities=17%  Similarity=0.245  Sum_probs=93.8

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc----
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC----   75 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~----   75 (113)
                      ..++|+|+++++++++.|+.|++||+.++..  ...+.+|...+.+++|+ |+++.+++++.|+.+++|++.....    
T Consensus        55 ~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccc-cccccceeecccCcceeeeeecccccccc
Confidence            3567899999999999999999999987653  44556788999999999 7899999999999999998765432    


Q ss_pred             ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          76 IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ......+...|.+++|+|++++|++++.|+.+++||+
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccccceeccccCcEEEEEee
Confidence            2334457788999999999999999999999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-21  Score=114.07  Aligned_cols=108  Identities=19%  Similarity=0.406  Sum_probs=92.9

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      .|+++++++|++|+.|+.|++||+.+++.+.++.+|..+|.+++|+ + +..+++++.|+.+++|+....+.........
T Consensus        17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s-~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~   94 (355)
T d1nexb2          17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-H-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHN   94 (355)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEE-T-TTEEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEc-C-CCEEEEEeccccccccccccccccccccccc
Confidence            4678889999999999999999999999999999999999999998 4 4689999999999999998887665554333


Q ss_pred             --cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 --AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 --~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                        .......+.+++..+++++.|+.+++||++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~  126 (355)
T d1nexb2          95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  126 (355)
T ss_dssp             SCEEEEEEEEETTEEEEEEEETTSEEEEEECC
T ss_pred             ccccccccccccccceeeeecCCCcEEEEEcc
Confidence              334556678899999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.8e-21  Score=114.45  Aligned_cols=111  Identities=18%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             cceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEe---eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639           3 VPRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus         3 ~~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      .++|+|++. ++++++.|+.+++|+..+.+....+   ..|...|.+++|+|..+.++++++.|+.|++||.++++.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~  243 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  243 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence            457888876 4778999999999999887765554   356778999999966688999999999999999999998899


Q ss_pred             ecccccceEEEEEc---cCCCEEEEeecCCcEEEeecC
Q psy3639          79 YRGHSAEVVGVTFS---PDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        79 ~~~~~~~v~~~~~~---~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      +..|..++..+.|+   |+|++|++++.|+.|++||++
T Consensus       244 l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            88877766555554   688999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=3.1e-21  Score=112.48  Aligned_cols=108  Identities=19%  Similarity=0.299  Sum_probs=87.6

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeee---EEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce--
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ--   77 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~--   77 (113)
                      .++++|+++++++++.|+.+++||..++...   ..+..|..+|.+++|+ +++.++++++.||.|++||+.+.....  
T Consensus       184 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS-PDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceEEEcCCCEEEEEECCCCCcceEE
Confidence            4678999999999999999999999876544   3456789999999999 789999999999999999998765332  


Q ss_pred             eeccc-ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          78 TYRGH-SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ....+ ...+..+.| +++++|++++.|+.|++||+
T Consensus       263 ~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         263 IKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             ETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred             EecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence            22233 345666554 56789999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-21  Score=112.87  Aligned_cols=108  Identities=27%  Similarity=0.383  Sum_probs=90.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC---CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG---HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      +.+++++++++++++.|+.|++|+....+....+..   |...+.++.++   +.++++++.||.|++||+++++.+..+
T Consensus       220 v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            345677888999999999999999988877766654   55677777776   578999999999999999999887766


Q ss_pred             c-----ccccceEEEEEccCCCEEEEeecCCc----EEEeecC
Q psy3639          80 R-----GHSAEVVGVTFSPDQSTFCSCSMDHT----ARIFNTM  113 (113)
Q Consensus        80 ~-----~~~~~v~~~~~~~~~~~~~~~~~~~~----i~~~~~~  113 (113)
                      .     ++...|++++|+|++.++++++.||+    |++||+.
T Consensus       297 ~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            4     45678999999999999999998885    9999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.1e-21  Score=116.15  Aligned_cols=109  Identities=19%  Similarity=0.396  Sum_probs=88.9

Q ss_pred             CcceEcCCCCEEEeeecCC---eEEEeeCCCCeeeEEee-------------CCCCeEEEEEEcCCCCCEEEEEeCCCcE
Q psy3639           2 GVPRVTSSPQRCLTGSYDR---TCKLWDIKSGHEICTYR-------------GHQNVVYAVAFSEPYGDKILTGSFDKTL   65 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~---~v~i~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~v   65 (113)
                      ..++|+|++++|++++.|+   .|++||+.+++.+..+.             +|...|++++|+ |+++++++++.|++|
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-pd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEETTSEE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC-CCCCeeEEECCCCEE
Confidence            3567999999999999987   48999999988777663             799999999999 789999999999999


Q ss_pred             EEEeCCccccceeecccccc---------------------eEEEEEccCC----------CEEEEeecCCcEEEee
Q psy3639          66 KLWASAKEECIQTYRGHSAE---------------------VVGVTFSPDQ----------STFCSCSMDHTARIFN  111 (113)
Q Consensus        66 ~~wd~~~~~~~~~~~~~~~~---------------------v~~~~~~~~~----------~~~~~~~~~~~i~~~~  111 (113)
                      ++||+.+++++.++.+|...                     ++.+.|.+.+          ..+++++.|+.|++|.
T Consensus       314 ~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            99999999999888776543                     3455554422          3477777888888875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.9e-21  Score=114.44  Aligned_cols=110  Identities=20%  Similarity=0.228  Sum_probs=86.2

Q ss_pred             cceEcCC-CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC--CCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           3 VPRVTSS-PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE--PYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         3 ~~~~~~~-~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      +++|+|+ ++++++++.|+.|++||.++++.+..+.+|..++..+.+++  +++.++++++.|+.|++||+++++.+..+
T Consensus       210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            4678886 57899999999999999999999999988877654443331  45789999999999999999999888877


Q ss_pred             ccccc--ceEEEEEccC-CCEEEEeecCCcEEEeec
Q psy3639          80 RGHSA--EVVGVTFSPD-QSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        80 ~~~~~--~v~~~~~~~~-~~~~~~~~~~~~i~~~~~  112 (113)
                      ..+..  .+..+++.+. +.++++++.||.|++||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            65543  2333444332 347889999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.3e-20  Score=109.20  Aligned_cols=111  Identities=10%  Similarity=0.091  Sum_probs=89.5

Q ss_pred             CcceEcCCCCEEEeeecCCeEEEeeCCCCee---eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccccee
Q psy3639           2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT   78 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~   78 (113)
                      ..++|+|++++|++++.|++|++||+.++..   +....+|..+|.+++|+|..+..+++++.|+.+++|+.........
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~   94 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA   94 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccc
Confidence            4578999999999999999999999876543   2333469999999999966677899999999999999988766655


Q ss_pred             eccccc-ceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          79 YRGHSA-EVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        79 ~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ...+.. ......+.++...+++++.++.+++||+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          95 LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred             ccccccccccccccccccccccccccccccceeec
Confidence            554433 3344556678889999999999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-19  Score=102.46  Aligned_cols=106  Identities=24%  Similarity=0.421  Sum_probs=89.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      +.|+++++++|++|+.|+.|++||+.+++++.++.+|...|.+++++   ++++++++.|+.+++|++..+.........
T Consensus        18 V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~   94 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHH   94 (293)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             EEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccccccccccccc
Confidence            55789999999999999999999999999999999999999999875   679999999999999999988766666544


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ....  ..+.+....++++..++.+.+|+.+
T Consensus        95 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  123 (293)
T d1p22a2          95 CEAV--LHLRFNNGMMVTCSKDRSIAVWDMA  123 (293)
T ss_dssp             CSCE--EEEECCTTEEEEEETTSCEEEEECS
T ss_pred             cccc--ccccccccceeecccccceeEeecc
Confidence            4333  3445567788999999999999863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-19  Score=103.31  Aligned_cols=106  Identities=25%  Similarity=0.548  Sum_probs=89.9

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc-
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG-   81 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~-   81 (113)
                      +..+.+++..+++++.|+.|++||+..++.+..+..|...+.++.++   +.++++++.|+.|++||....+....+.. 
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  256 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGP  256 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC---CCEEEEEcCCCEEEEEeccccccccccccc
Confidence            34567789999999999999999999999999999999999999887   47999999999999999988876666654 


Q ss_pred             --cccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          82 --HSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        82 --~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                        +...+.++.+  +++++++++.||.|++||++
T Consensus       257 ~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         257 NKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             TSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             ceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence              3445665655  56799999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.1e-18  Score=99.95  Aligned_cols=110  Identities=13%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             cceEcCCCCEEEeeecCC-eEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce-ee
Q psy3639           3 VPRVTSSPQRCLTGSYDR-TCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TY   79 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~-~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~-~~   79 (113)
                      +.+++++++.+++++.++ .+++|++...+....+. .+..++.+++|+ +++.++++++.||.|++||+.+++... .+
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeecccccccccc
Confidence            356788888888877765 69999987666555443 477889999999 789999999999999999999886544 45


Q ss_pred             cccccceEEEEEccC----------CCEEEEeecCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPD----------QSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~----------~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|..+|.+++|+|.          +.++++++.|+.|++||++
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            678889999999874          4689999999999999973

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-19  Score=103.05  Aligned_cols=104  Identities=27%  Similarity=0.525  Sum_probs=88.0

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc---------
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE---------   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~---------   73 (113)
                      +..+.+++..+++++.|+.|++||+.+...+....++...+....   .++..+++++.||.|++||+...         
T Consensus       181 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  257 (293)
T d1p22a2         181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT  257 (293)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE---CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             cccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc---ccceEEEEEcCCCEEEEEECCCCccccccCCc
Confidence            345667788999999999999999999999999998888887654   45789999999999999996442         


Q ss_pred             ccceeecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      ..+..+.+|...|.+++|+  +++|++++.|++|++||
T Consensus       258 ~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         258 LCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             eeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            3456778899999999984  67899999999999998

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.3e-17  Score=97.99  Aligned_cols=107  Identities=23%  Similarity=0.440  Sum_probs=97.8

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      ....++++.++++..|+.+++||..+++.+....++...+.++.++ +.+..+++++.|+.+++||.+++..+..+.+|.
T Consensus       165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~  243 (355)
T d1nexb2         165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELMYTLQGHT  243 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             cccccccceeeeecccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeeecccccccccccccc
Confidence            3456778999999999999999999999999999899999999999 778999999999999999999999999999999


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      ..|.+++++  ++++++++.||.|++||++
T Consensus       244 ~~v~~~~~~--~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             SCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred             ccccccccc--cceeeeeeccccccccccc
Confidence            999999886  5789999999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.78  E-value=7.7e-18  Score=99.62  Aligned_cols=105  Identities=5%  Similarity=-0.055  Sum_probs=87.8

Q ss_pred             ceEcC-CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCC--cEEEEeCCccccceeec
Q psy3639           4 PRVTS-SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK--TLKLWASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~-~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~v~~wd~~~~~~~~~~~   80 (113)
                      ..|+| +|+++++++. +.|++||..++...+.  +|...+.+++|+ |+++.+++++.+.  .+++||..+++. ..+.
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~s-pDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRG-GDTKVAFIHGTREGDFLGIYDYRTGKA-EKFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEEC-SSSEEEEEEEETTEEEEEEEETTTCCE-EECC
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEEC-CCCCEEEEEEcCCCCEEEEEECCCCcE-EEee
Confidence            46899 8999998874 7899999987776653  589999999999 7888877655443  799999988764 4566


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+...+..++|+|+|+++++++.++.+.+|++.
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEeeeecccccccceecccccccccccc
Confidence            688899999999999999999999999999863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=1.4e-17  Score=101.61  Aligned_cols=100  Identities=11%  Similarity=-0.092  Sum_probs=81.6

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee-----cccccce
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-----RGHSAEV   86 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~-----~~~~~~v   86 (113)
                      ++++.++|+.|++||+.+++.+.++..+. .+..++|+ |+|+.+++++.|+++++||+.+++.....     .++...+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS-PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC-CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            56788899999999999999999998765 47999999 89999999999999999999888643322     2344556


Q ss_pred             EEEEEccCCCEEEEe-ecCCcEEEeecC
Q psy3639          87 VGVTFSPDQSTFCSC-SMDHTARIFNTM  113 (113)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~  113 (113)
                      .+++|+|||++++++ ..++.+.+||.+
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            677788999987554 578999999863

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=2.2e-17  Score=97.64  Aligned_cols=110  Identities=9%  Similarity=0.089  Sum_probs=91.8

Q ss_pred             CcceEcCCCCEEEeeecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceee
Q psy3639           2 GVPRVTSSPQRCLTGSYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY   79 (113)
Q Consensus         2 ~~~~~~~~~~~~~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~   79 (113)
                      ..++|+|+++++++++.+.  .+++||..+++.. .+..|...+..++|+ |+++.+++++.++.+++|+..+++....+
T Consensus        46 ~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (360)
T d1k32a3          46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIE  123 (360)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeec-ccccccceeccccccccccccccceeeee
Confidence            3578999999888766553  6899999876654 566799999999999 88999999999999999999999888888


Q ss_pred             cccccceEEEEEccCCCEEEEee----------cCCcEEEeecC
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCS----------MDHTARIFNTM  113 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~----------~~~~i~~~~~~  113 (113)
                      ..+...+.+++|+|+|++++.+.          .++.+++||++
T Consensus       124 ~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~  167 (360)
T d1k32a3         124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  167 (360)
T ss_dssp             ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc
Confidence            88888889999999999998543          34568888863

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1.1e-16  Score=98.02  Aligned_cols=100  Identities=9%  Similarity=-0.112  Sum_probs=81.6

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccc--eee---cccccce
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI--QTY---RGHSAEV   86 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~--~~~---~~~~~~v   86 (113)
                      ++++.+.+++|.+||..+++.+..+..+. .+..++|+ |+++++++++.|+.+++||+.+++..  ..+   ..+.+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fS-pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC-CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            46889999999999999999999998764 58999999 89999999999999999999877532  222   2344455


Q ss_pred             EEEEEccCCCEE-EEeecCCcEEEeecC
Q psy3639          87 VGVTFSPDQSTF-CSCSMDHTARIFNTM  113 (113)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~  113 (113)
                      .+..|+|||+++ +++..++.+++||.+
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            566778899986 667789999999963

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.1e-15  Score=86.56  Aligned_cols=109  Identities=12%  Similarity=0.105  Sum_probs=84.1

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeee---EEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccce----
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ----   77 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~----   77 (113)
                      .+.+.+..+++++.|+.+++|++...+..   ..............+.|..+..+++++.||.+.+|+........    
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             eeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            56778889999999999999998766532   23334555677777776788899999999999999875432111    


Q ss_pred             -----------eecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          78 -----------TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        78 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                                 ....+...+.+++|+|++++|++++.||.|++||++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence                       112344578899999999999999999999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=4.5e-15  Score=87.09  Aligned_cols=108  Identities=10%  Similarity=0.048  Sum_probs=85.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC-CCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .+++++++++++++.++.|.+||+.+++.+.++.. +......++|+ |+++.+ +++..++.|.+||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s-pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC-CCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999999999988863 45567899999 777765 5666789999999999887765543


Q ss_pred             cc------cceEEEEEccCCCEEEEeec------------CCcEEEeec
Q psy3639          82 HS------AEVVGVTFSPDQSTFCSCSM------------DHTARIFNT  112 (113)
Q Consensus        82 ~~------~~v~~~~~~~~~~~~~~~~~------------~~~i~~~~~  112 (113)
                      ..      ..+..++|+|+|+++++++.            ++.+.+||.
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~  129 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  129 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEec
Confidence            21      23467899999999887653            556666654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=5.1e-14  Score=86.15  Aligned_cols=108  Identities=7%  Similarity=0.008  Sum_probs=80.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCee--eEEee---CCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccce
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHE--ICTYR---GHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQ   77 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~   77 (113)
                      ++|+|+|+++++++.|+.+++||+.+++.  ...+.   .|...+.+..|+ ++++++ +++..++.+++||..+++.+.
T Consensus        67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~  145 (432)
T d1qksa2          67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKK  145 (432)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCcccccee
Confidence            57999999999999999999999988763  33333   344444555566 678765 788889999999999887766


Q ss_pred             eecc-----------cccceEEEEEccCCCEEE-EeecCCcEEEeec
Q psy3639          78 TYRG-----------HSAEVVGVTFSPDQSTFC-SCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~-----------~~~~v~~~~~~~~~~~~~-~~~~~~~i~~~~~  112 (113)
                      .+..           .......+.++|+|..++ +...++.+.+||.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            5543           234456788999998765 4556788888875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=1.1e-13  Score=80.80  Aligned_cols=92  Identities=13%  Similarity=0.022  Sum_probs=74.4

Q ss_pred             CEEEeeecCCeEEEeeCCCCeeeEEeeC--CCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccceeecccc----
Q psy3639          11 QRCLTGSYDRTCKLWDIKSGHEICTYRG--HQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHS----   83 (113)
Q Consensus        11 ~~~~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~~~~~~~----   83 (113)
                      +++++++.|++|++||+.+++.+.++..  +...+..++++ |+++++ ++++.++.|.+||+.+++.+.....+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            4789999999999999999999988864  34457889999 778876 567789999999999998877765442    


Q ss_pred             -cceEEEEEccCCCEEEEeec
Q psy3639          84 -AEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        84 -~~v~~~~~~~~~~~~~~~~~  103 (113)
                       ..+..++|+|+++.++++..
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEE
T ss_pred             ccceeeEEEcCCCcEEEEeec
Confidence             23457899999999887764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.51  E-value=1.2e-12  Score=75.46  Aligned_cols=97  Identities=20%  Similarity=0.247  Sum_probs=78.0

Q ss_pred             EEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccceeecccccceEEEEE
Q psy3639          13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTF   91 (113)
Q Consensus        13 ~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~   91 (113)
                      +++.+.+++|.+||+.+++.+.++... .....++++ |+++++ +++..++.|++||+.+++.+..+..+. ....+.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence            446778999999999999999988744 456899999 777765 577788999999999999888887554 4578999


Q ss_pred             ccCCCEEEE-eecCCcEEEeec
Q psy3639          92 SPDQSTFCS-CSMDHTARIFNT  112 (113)
Q Consensus        92 ~~~~~~~~~-~~~~~~i~~~~~  112 (113)
                      ++++..+++ +..++.+.+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEET
T ss_pred             ccccccccccccccceeeeccc
Confidence            999987665 455677888875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.50  E-value=2.7e-12  Score=73.90  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=83.7

Q ss_pred             ceEcCCCCEE-EeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeeccc
Q psy3639           4 PRVTSSPQRC-LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH   82 (113)
Q Consensus         4 ~~~~~~~~~~-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~   82 (113)
                      ++++|+++++ +++..++.|++||+.+++.+..+..+.. ...+.+++.....++++..++.+.+|+..+++....+..+
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccc
Confidence            5789999976 4667789999999999999998886655 5888999443345566667789999999998877777644


Q ss_pred             ccceEEEEEccCCCEEEE-eecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCS-CSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~  112 (113)
                       .....+.++|+++.++. +..++.+.+|+.
T Consensus       116 -~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~  145 (301)
T d1l0qa2         116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (301)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             -ccceEEEeecCCCeeeeeeccccceeeeec
Confidence             45678999999998755 455777888875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.8e-13  Score=78.61  Aligned_cols=99  Identities=8%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             EEEeeecCCeEEEeeCCCCee---eEEeeCCCCeEEEEEEcCCCCCEEEEE-eCCCcEEEEeCCccccceeec---cccc
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLWASAKEECIQTYR---GHSA   84 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~wd~~~~~~~~~~~---~~~~   84 (113)
                      .++++++++.|++|++.....   ++.+ .+...+..++|+ |+++.|+++ ..++.|++|++..........   ....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            356777999999999875533   3333 477889999999 778877554 458999999987654333222   2334


Q ss_pred             ceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          85 EVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                      .+..++|+|+|+++++++. ++.+.+|+.
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeecc
Confidence            5678999999999988875 667887753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=2.5e-13  Score=82.60  Aligned_cols=107  Identities=10%  Similarity=0.044  Sum_probs=73.1

Q ss_pred             cceEcCCCCEEEeeecCCeEEEeeCCCCeeeE--Eee---CCCCeEEEEEEcCCCCCEE-EEEeCCCcEEEEeCCccccc
Q psy3639           3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC--TYR---GHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECI   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~~-~~~~~~~~v~~wd~~~~~~~   76 (113)
                      .++|+|+|+++++++.|+.+++||+.+++...  .+.   +|...+.+.+|+ |+++.+ +++..++.+.+||..+++.+
T Consensus        66 ~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2          66 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCcccee
Confidence            35899999999999999999999999887443  232   344455566666 677775 55567899999999988766


Q ss_pred             eeecccc-----------cceEEEEEccCCCEEEEeecC-CcEEEe
Q psy3639          77 QTYRGHS-----------AEVVGVTFSPDQSTFCSCSMD-HTARIF  110 (113)
Q Consensus        77 ~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~-~~i~~~  110 (113)
                      .....+.           .....+..++++..++....+ +.+.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            5554332           233456666777666554443 334333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.8e-11  Score=71.26  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=81.2

Q ss_pred             cceEcCCCCEE-EeeecCCeEEEeeCCCCeeeEEeeCCCC-----eEEEEEEcCCCCCEEEEEe------------CCCc
Q psy3639           3 VPRVTSSPQRC-LTGSYDRTCKLWDIKSGHEICTYRGHQN-----VVYAVAFSEPYGDKILTGS------------FDKT   64 (113)
Q Consensus         3 ~~~~~~~~~~~-~~~~~d~~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~------------~~~~   64 (113)
                      .++++|+++++ ++++.++.|.+||+.+++.+..+..+..     ....++++ +++..++.+.            .++.
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccccccc
Confidence            46789999976 4667889999999999998887765433     23468888 7777776665            3567


Q ss_pred             EEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.+||..+++....+.. ...+..++|+|+|+++++++.+  +.+||.
T Consensus       117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~  161 (337)
T d1pbyb_         117 VALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDP  161 (337)
T ss_dssp             EEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEET
T ss_pred             eeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeee
Confidence            88999999887777764 3456789999999999888644  566764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=9.5e-12  Score=72.69  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             EeeecCCeEEEeeCCCCeeeE-EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEc
Q psy3639          14 LTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFS   92 (113)
Q Consensus        14 ~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~   92 (113)
                      .++..+..+.+|+..++.... ....+...+..+.+++. +..++.... +.+.+||..+++.+..+. ....+.+++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s  300 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFD  300 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             eeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCC-CCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEc
Confidence            344556667888888776543 34557778888888844 455554443 579999999998887776 34568899999


Q ss_pred             cCCCEEEEeecCCcEEEeecC
Q psy3639          93 PDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        93 ~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |||+++++++.++.|++||++
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETT
T ss_pred             CCCCEEEEEeCCCcEEEEECc
Confidence            999999999999999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=9.1e-11  Score=69.01  Aligned_cols=107  Identities=9%  Similarity=0.006  Sum_probs=78.8

Q ss_pred             cceEcCCCCEEEeee-----cCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEE----------eCCCcEEE
Q psy3639           3 VPRVTSSPQRCLTGS-----YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG----------SFDKTLKL   67 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~-----~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~v~~   67 (113)
                      ..+.+|+++.++...     .+..+.+||..+++.+.++..+..+  .++|+ |+++.++..          ..++.|++
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~S-pDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVA-DDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEc-CCCCEEEEEeCCCccccccCCCCEEEE
Confidence            456789999877643     3557999999999999888766555  68999 778776654          34788999


Q ss_pred             EeCCccccceeecccc-------cceEEEEEccCCCEEEEee--cCCcEEEeec
Q psy3639          68 WASAKEECIQTYRGHS-------AEVVGVTFSPDQSTFCSCS--MDHTARIFNT  112 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~--~~~~i~~~~~  112 (113)
                      ||..+++.+..+..+.       .....++|+|+++.+++.+  .+..+.+|+.
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence            9999988766554221       2234589999999887765  3567888875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.22  E-value=1.7e-10  Score=70.68  Aligned_cols=104  Identities=13%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC-----CCCeEEEEEEcCCCCCEEEEEeC---------CCcEEEEe
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEPYGDKILTGSF---------DKTLKLWA   69 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~---------~~~v~~wd   69 (113)
                      ..|.++++++..  +++.+.+||+.+++....+..     +...+.+..|+ |+++.++.++.         ++.+.+||
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECCcceeeeccCceEEEEE
Confidence            356777776664  467799999999987655543     45678999999 78888877643         45788999


Q ss_pred             CCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      +.+++ +..+..+...+....|||||+.++... ++.+.+|++
T Consensus        99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~  139 (470)
T d2bgra1          99 LNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIE  139 (470)
T ss_dssp             TTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             CCCCc-ccccccCCccccccccccCcceeeEee-cccceEEEC
Confidence            99887 455666778889999999999998864 667888765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=4.4e-10  Score=65.37  Aligned_cols=109  Identities=11%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             cceEcCCCCEEEee-ecCCeEEEeeCCCCeeeEEe---eCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCccccc-
Q psy3639           3 VPRVTSSPQRCLTG-SYDRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAKEECI-   76 (113)
Q Consensus         3 ~~~~~~~~~~~~~~-~~d~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~~~~~-   76 (113)
                      .++++|++++|+++ ..|+.|++|++........+   ..+...+..++++ ++++.+++++. ++.+.+|+....... 
T Consensus        41 ~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~  119 (333)
T d1ri6a_          41 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVG  119 (333)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc-CCCCEEeecccCCCceeeecccccccee
Confidence            46799999988654 45899999998765422222   2244456789999 77888877775 668888876554322 


Q ss_pred             -eeecccccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          77 -QTYRGHSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        77 -~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                       .....+...+..+.++|+++++++++. +..+.+|+.
T Consensus       120 ~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_         120 VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence             223334556778999999998877765 456777764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.18  E-value=1e-09  Score=64.98  Aligned_cols=107  Identities=10%  Similarity=-0.030  Sum_probs=77.3

Q ss_pred             cceEcCCCCEEEee-----ecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe----------CCCcEEE
Q psy3639           3 VPRVTSSPQRCLTG-----SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS----------FDKTLKL   67 (113)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~v~~   67 (113)
                      ..+++|+++.++..     +..+.+.+||..+++.+.++..+..+  .++|+ |+++.++.++          .++.|.+
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~S-pDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEc-CCCCEEEEEeecCCcccccccceEEEE
Confidence            45789999987654     23457999999999999988766554  78899 7888887765          3578999


Q ss_pred             EeCCccccceeecccccc-------eEEEEEccCCCEEEEee--cCCcEEEeec
Q psy3639          68 WASAKEECIQTYRGHSAE-------VVGVTFSPDQSTFCSCS--MDHTARIFNT  112 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~~--~~~~i~~~~~  112 (113)
                      ||..+++.+.....+...       ...+.|+++++.+++..  .++.+.+|+.
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  155 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeec
Confidence            999999877666544332       24577888888765543  3456666654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=6.1e-10  Score=68.16  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=73.5

Q ss_pred             cceEcCCCCEEEeeec---------CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           3 VPRVTSSPQRCLTGSY---------DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      ...|+|+++.|+.++.         ++.+.+||+.+++. ..+..+...+....|+ |+|+.++.. .++.+.+|+..++
T Consensus        66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~S-PDG~~ia~~-~~~~l~~~~~~~g  142 (470)
T d2bgra1          66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNL  142 (470)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTS
T ss_pred             eeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccc-cCcceeeEe-ecccceEEECCCC
Confidence            3468999999887753         46778999997764 4567788889999999 888888875 4568999998877


Q ss_pred             ccceeecc------------------cccceEEEEEccCCCEEEEeecCC
Q psy3639          74 ECIQTYRG------------------HSAEVVGVTFSPDQSTFCSCSMDH  105 (113)
Q Consensus        74 ~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~  105 (113)
                      +.......                  ..+....+.|||||+.++....|.
T Consensus       143 ~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            54432211                  112235578999999999876653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.07  E-value=3.1e-09  Score=62.81  Aligned_cols=80  Identities=8%  Similarity=-0.046  Sum_probs=64.1

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC--EEEEEeCCCcEEEEeCCccccceeecccccceEEE
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD--KILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV   89 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~   89 (113)
                      .++....++.+.+||..+++.+..+. +...+..++|+ ++++  ++++++.|+.|++||..+++.+.++..+......+
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~s-pDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVA-QDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEEC-CCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence            44455667789999999999888876 66778899999 6776  45688899999999999999999998776666666


Q ss_pred             EEcc
Q psy3639          90 TFSP   93 (113)
Q Consensus        90 ~~~~   93 (113)
                      ++..
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            6644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=2.7e-09  Score=62.57  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             ceEcCCCCEEEeeecC----------CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC--EEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTGSYD----------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD--KILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d----------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~v~~wd~~   71 (113)
                      .++++++..++....+          ..|.+||..+++.+..+. +...+.+++|+ ++++  +++++..++.|++||..
T Consensus       254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~s-pDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVS-QDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEEC-CSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEc-CCCCeEEEEEECCCCEEEEEECC
Confidence            5677788766654433          368999999999888776 44567899999 6665  45677789999999999


Q ss_pred             ccccceeecccccceEEEEEcc
Q psy3639          72 KEECIQTYRGHSAEVVGVTFSP   93 (113)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~   93 (113)
                      +++.+.++..+......+.+..
T Consensus       332 tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         332 SGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TCCEEEEECCCCSSCCEEECCC
T ss_pred             CCCEEEEEeCcCCCccEEEeCC
Confidence            9999888876554444455443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=5.3e-09  Score=62.13  Aligned_cols=106  Identities=8%  Similarity=-0.075  Sum_probs=74.6

Q ss_pred             eEcCCCCEE--E-eeecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe----------CCCcEEEEe
Q psy3639           5 RVTSSPQRC--L-TGSYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS----------FDKTLKLWA   69 (113)
Q Consensus         5 ~~~~~~~~~--~-~~~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~v~~wd   69 (113)
                      +..++++..  . ....++  .+.++|..+++.+.++..+..+  .++++ ++++.++..+          .++.|.+||
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~s-pDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceEC-CCCCEEEEEcccCccccccccCCeEEEEE
Confidence            345666642  2 233444  4667799999998888776665  47888 7787776654          356799999


Q ss_pred             CCccccceeecccc-------cceEEEEEccCCCEEEEee-cCCcEEEeecC
Q psy3639          70 SAKEECIQTYRGHS-------AEVVGVTFSPDQSTFCSCS-MDHTARIFNTM  113 (113)
Q Consensus        70 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~  113 (113)
                      ..+++.+..+..+.       .....++|+|||++++++. .++.+.+||+.
T Consensus       103 ~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_         103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred             CCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            99988776654321       1234689999999998876 46899999863

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.76  E-value=3e-08  Score=58.83  Aligned_cols=79  Identities=9%  Similarity=-0.121  Sum_probs=58.7

Q ss_pred             cceEcCCCCEEEeee----------cCCeEEEeeCCCCeeeEEeeCCCC-------eEEEEEEcCCCCCEEEEEe-CCCc
Q psy3639           3 VPRVTSSPQRCLTGS----------YDRTCKLWDIKSGHEICTYRGHQN-------VVYAVAFSEPYGDKILTGS-FDKT   64 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~-~~~~   64 (113)
                      ...++|+++.++.++          .|+.|.+||..+++.+..+..+..       ....++|+ +++++++.++ .++.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC-CCCCEEEEEeCCCCe
Confidence            357899999887654          467899999999998877753321       12358899 7788777665 5789


Q ss_pred             EEEEeCCccccceeeccc
Q psy3639          65 LKLWASAKEECIQTYRGH   82 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~~~   82 (113)
                      +.+||+.+.+.+.....+
T Consensus       148 v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEEETTTEEEEEEECS
T ss_pred             EEEEECCCCcEeEEeecc
Confidence            999999998877666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.66  E-value=2.2e-06  Score=49.61  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcccc-ceee--c
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-IQTY--R   80 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~-~~~~--~   80 (113)
                      ++++|+|+++++...+++|..++.. ++ ...+......+..+++. +++.++++...++.+..++...... ...+  .
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVETLLTL  109 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEc-CCCCeEEEecCCceEEEEEecccccceeecccc
Confidence            4789999999998889998888855 33 23344466778999999 7889988888888888887543321 1111  1


Q ss_pred             ccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ........+.+.++++++++.+.++.+..+|.
T Consensus       110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1         110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             CCccccceeEEccCCCEEeeccccccceeeec
Confidence            13345788999999998888777777776654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=2.9e-06  Score=48.15  Aligned_cols=107  Identities=8%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-cc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GH   82 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-~~   82 (113)
                      ++++++++++++...++.|..++...................+++. +++.++++-..++.|..++..... ..... ..
T Consensus       145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~  222 (260)
T d1rwia_         145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTG  222 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCCEEEEETTTTEEEEECTTCSC-CEECCCCS
T ss_pred             eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceee-eeeeeeeeecCCCEEEEEeCCCCe-EEEEccCC
Confidence            4667888888887788889999977554333222344556889998 678888888778888888765443 22222 22


Q ss_pred             ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        83 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      -.....++++++|+.+++-..++.|..++.
T Consensus       223 ~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            235578999999988777677777776653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=4.3e-06  Score=47.86  Aligned_cols=105  Identities=15%  Similarity=0.251  Sum_probs=74.7

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee--CCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCccccceeec
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~~~~~~~~~   80 (113)
                      +++.++++.+++....+.|++||.. ++.+..+.  +.......+++. ++++.+++-.. ++.|.+|+. +++.+..+.
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            3567778888888888899999965 66666663  344557889998 77887766544 446889984 566665554


Q ss_pred             cc--ccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          81 GH--SAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        81 ~~--~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                      ..  ......+++.|+|.+ ++++.++.|++|..
T Consensus       239 ~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         239 SKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRY  271 (279)
T ss_dssp             ESSCCSCEEEEEEETTTEE-EEEETTTEEEEEEC
T ss_pred             CCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEe
Confidence            22  335688999999975 55567899999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.56  E-value=7.8e-06  Score=47.71  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             eEcCCCC-----EEEeeecCCeEEEeeCCCCeeeE------EeeC-CCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCc
Q psy3639           5 RVTSSPQ-----RCLTGSYDRTCKLWDIKSGHEIC------TYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK   72 (113)
Q Consensus         5 ~~~~~~~-----~~~~~~~d~~v~i~~~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~   72 (113)
                      +++++++     ++++-+..+.|..|++.....+.      .+.. .....-.+++. .+++++++....+.|..||...
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTC
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCC
Confidence            4555543     44445566777777754332221      1111 12235678888 7888888888889999999988


Q ss_pred             cccceeecccccceEEEEEccCCCEE-EEeecCCcEEEeec
Q psy3639          73 EECIQTYRGHSAEVVGVTFSPDQSTF-CSCSMDHTARIFNT  112 (113)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~i~~~~~  112 (113)
                      ++.+..+........+++|.|+++.| ++.+.++.|.-+++
T Consensus       257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            87666666555677899999998755 55566788887765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=2.2e-05  Score=44.42  Aligned_cols=107  Identities=7%  Similarity=-0.039  Sum_probs=67.8

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      ++++++++++++-..+..+..++...................+++. +++..+++...++.+..+|..............
T Consensus       103 iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~  181 (260)
T d1rwia_         103 LAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  181 (260)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             ccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec-CCCCEeeeccccccccccccccceeeeeecccc
Confidence            3566777776665555666666654433221111122334678888 678888887888889999876554322222333


Q ss_pred             cceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          84 AEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      .....++++++|+++++....+.|..++
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEe
Confidence            4567899999998777777777777665

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.25  E-value=3.5e-05  Score=45.73  Aligned_cols=108  Identities=8%  Similarity=0.008  Sum_probs=66.7

Q ss_pred             ceEcCCCCEEEeee-cCCeEEEeeCCCCeee--EE---ee--------------CCCCeEEEEEEcCCCCCEEEEEeC-C
Q psy3639           4 PRVTSSPQRCLTGS-YDRTCKLWDIKSGHEI--CT---YR--------------GHQNVVYAVAFSEPYGDKILTGSF-D   62 (113)
Q Consensus         4 ~~~~~~~~~~~~~~-~d~~v~i~~~~~~~~~--~~---~~--------------~~~~~v~~~~~~~~~~~~~~~~~~-~   62 (113)
                      ..++|+++++.+.. .+++|.+|+...+...  ..   ..              ........+.++ |++++++++.. +
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-pdG~~lyvsnr~~  276 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-FSGKYMFASSRAN  276 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-TTSSEEEEEEEES
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC-CCCCEEEEEcccC
Confidence            46899999776544 5788999998665322  11   11              112345678898 78888776643 1


Q ss_pred             -----CcEEEEeCCcccccee------ecccccceEEEEEcc-CCCEEEEee-cCCcEEEeec
Q psy3639          63 -----KTLKLWASAKEECIQT------YRGHSAEVVGVTFSP-DQSTFCSCS-MDHTARIFNT  112 (113)
Q Consensus        63 -----~~v~~wd~~~~~~~~~------~~~~~~~v~~~~~~~-~~~~~~~~~-~~~~i~~~~~  112 (113)
                           ..|..|++.....+..      ..........++++| +|++|+++. .++.|.+|++
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence                 2366666544221111      111233456799998 899887764 5688999974

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.18  E-value=0.00012  Score=43.44  Aligned_cols=99  Identities=5%  Similarity=-0.073  Sum_probs=62.2

Q ss_pred             cceEcCCCCEEEeeec-CCeEEEeeCCCC-eee--EEee--CCCCeEEEEEEcCCCCCEEE-EEeCCCcEEEEeCCcccc
Q psy3639           3 VPRVTSSPQRCLTGSY-DRTCKLWDIKSG-HEI--CTYR--GHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEEC   75 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~-d~~v~i~~~~~~-~~~--~~~~--~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~wd~~~~~~   75 (113)
                      .+.++|+++++++.+. ...|.+|+.... ...  ....  ........+.++ ++++.++ +...+++|.+|+....+.
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCCc
Confidence            3578999997777654 457888875433 221  1221  234567899999 6677664 555578999998765432


Q ss_pred             cee-----ec--------------ccccceEEEEEccCCCEEEEee
Q psy3639          76 IQT-----YR--------------GHSAEVVGVTFSPDQSTFCSCS  102 (113)
Q Consensus        76 ~~~-----~~--------------~~~~~v~~~~~~~~~~~~~~~~  102 (113)
                      ...     ..              ........+.++|+|++++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            211     10              1112345789999999987764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.12  E-value=2.3e-05  Score=47.89  Aligned_cols=86  Identities=8%  Similarity=0.010  Sum_probs=61.5

Q ss_pred             EEEeeecCCeEEEeeCCCCeeeEEeeC------------------------------CCCeEEEEEEcCCCCCEEEEE-e
Q psy3639          12 RCLTGSYDRTCKLWDIKSGHEICTYRG------------------------------HQNVVYAVAFSEPYGDKILTG-S   60 (113)
Q Consensus        12 ~~~~~~~d~~v~i~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~~~-~   60 (113)
                      .+++++.+|.|++|++.+++.+.++..                              |-......... ++|++++.. .
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt-pDGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR-YDGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE-EEEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc-CCCCEEEEEcC
Confidence            366888999999999999887776531                              11223344445 567777554 4


Q ss_pred             CCCcEEEEeCCccccceeecc-cccceEEEEEccCCCEE
Q psy3639          61 FDKTLKLWASAKEECIQTYRG-HSAEVVGVTFSPDQSTF   98 (113)
Q Consensus        61 ~~~~v~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~   98 (113)
                      .+++|.++|+.+.+....... .......++|+|+|++.
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~  130 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN  130 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE
Confidence            678999999999887665542 45678899999999853

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.09  E-value=0.00015  Score=41.27  Aligned_cols=106  Identities=10%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEee--CCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++.++++++++....+.+.+++.. ++.+..+.  .+......+++. +++..+++....+.|++||.. ++.+.++..
T Consensus       119 ~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~  195 (279)
T d1q7fa_         119 VTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYE-GQYLRQIGG  195 (279)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred             eccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeec-cceeEEeeeccccceeeeecC-Cceeeeecc
Confidence            3566777777776667777777754 55555542  345567888888 677888888888899999864 455555532


Q ss_pred             --cccceEEEEEccCCCEEEEeec-CCcEEEeec
Q psy3639          82 --HSAEVVGVTFSPDQSTFCSCSM-DHTARIFNT  112 (113)
Q Consensus        82 --~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  112 (113)
                        .......+++.++|+.+++-.. ++.|.+|+.
T Consensus       196 ~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         196 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence              3345678999999997666444 345888763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.96  E-value=7.9e-05  Score=45.50  Aligned_cols=97  Identities=1%  Similarity=-0.143  Sum_probs=66.5

Q ss_pred             EcCCCCEEEee-ecCCeEEEeeCCCCeeeEEee-CCCCeEEEEEEcCCCCC--EEEEEeCCC-----------------c
Q psy3639           6 VTSSPQRCLTG-SYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGD--KILTGSFDK-----------------T   64 (113)
Q Consensus         6 ~~~~~~~~~~~-~~d~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~-----------------~   64 (113)
                      ..|+|+++++. ..+..|.++|+++.+....+. ........++++ ++++  +++..+.+.                 .
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC-CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEe-ccCCEEEEEeccCCcccccCcccccccccccce
Confidence            35788877554 567889999999998877665 356678999999 5555  444433322                 1


Q ss_pred             EEEEeCCccccceeecccccceEEEEEccCCCEEEEeecC
Q psy3639          65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        65 v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      +..+|..+.+...+.... +....+.++|+|+++++.+.+
T Consensus       158 ~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred             EEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecC
Confidence            234666666655555533 345779999999999888765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.94  E-value=0.00029  Score=39.41  Aligned_cols=98  Identities=18%  Similarity=0.141  Sum_probs=63.5

Q ss_pred             CcceEcCC--CCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEe-CCC-----cEEEEeCCcc
Q psy3639           2 GVPRVTSS--PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDK-----TLKLWASAKE   73 (113)
Q Consensus         2 ~~~~~~~~--~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~-----~v~~wd~~~~   73 (113)
                      +-..++|+  |+.++-.+ ++.|.+.|+.+++.. .+..+........|+ |+|+.++-.. .++     .+.+++...+
T Consensus         2 ~~~~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           2 PNLLLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CCCCEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CCcccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            34456888  99887654 456888899877654 455577778899999 7788776432 222     3666676666


Q ss_pred             ccceee--c----ccccceEEEEEccCCCEEEEee
Q psy3639          74 ECIQTY--R----GHSAEVVGVTFSPDQSTFCSCS  102 (113)
Q Consensus        74 ~~~~~~--~----~~~~~v~~~~~~~~~~~~~~~~  102 (113)
                      +....-  .    ..........|+|+|+.++...
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            432211  1    1122346788999999887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.94  E-value=0.00019  Score=41.33  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             eeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEe
Q psy3639          31 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF  110 (113)
Q Consensus        31 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~  110 (113)
                      +.+..+.. ...+..+++. ++++++++...+++|..++....  ...+......+..++|+++|+.+++...++.+..+
T Consensus        19 ~v~~~~p~-~~~~e~iAv~-pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASA-PDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEECT-TCCEEEEEEC-TTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             cEEEECCC-CCCcCCEEEC-CCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            33444432 2347889999 88999999988999988886543  33344455678899999999988888777777666


Q ss_pred             e
Q psy3639         111 N  111 (113)
Q Consensus       111 ~  111 (113)
                      +
T Consensus        95 ~   95 (302)
T d2p4oa1          95 S   95 (302)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00011  Score=45.00  Aligned_cols=98  Identities=13%  Similarity=0.216  Sum_probs=60.8

Q ss_pred             eEcCCCCEEEeee---------cCCeEEEeeCCCCeeeEEe--eCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc
Q psy3639           5 RVTSSPQRCLTGS---------YDRTCKLWDIKSGHEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE   73 (113)
Q Consensus         5 ~~~~~~~~~~~~~---------~d~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~   73 (113)
                      .++|+++.++...         ..+.+.+||+.++......  ......+....|+ |+|+.++-.. ++.+.+.+...+
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~~~~~~~  144 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYYCAHVGK  144 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEEESSSSS
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeec-cCCceEEEEe-cceEEEEecCCC
Confidence            4799999877653         3467788999877643322  2223345567889 7787776554 456777776655


Q ss_pred             ccceeec-ccc-----------------cceEEEEEccCCCEEEEeecC
Q psy3639          74 ECIQTYR-GHS-----------------AEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        74 ~~~~~~~-~~~-----------------~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      ...+... +..                 +.-..+-|||||++|+....|
T Consensus       145 ~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            4332221 111                 112467799999999886543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.0015  Score=36.36  Aligned_cols=103  Identities=11%  Similarity=-0.026  Sum_probs=56.5

Q ss_pred             EcCCCCEEE-eeecCC--eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEE-eCCCcEEEE--eCCccccceee
Q psy3639           6 VTSSPQRCL-TGSYDR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLW--ASAKEECIQTY   79 (113)
Q Consensus         6 ~~~~~~~~~-~~~~d~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~w--d~~~~~~~~~~   79 (113)
                      +++.++.++ +...++  .+...+...+... .............++ +++..++.. ...+...+|  +...+.  ...
T Consensus       134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~  209 (269)
T d2hqsa1         134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGG--VQV  209 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCC--EEE
T ss_pred             cccccccceecccccCCceEeeeecccccce-eeecccccccccccc-cccceeEEEeecCCceeeeEeeccccc--ceE
Confidence            344555333 333344  3445555544333 333455667788899 666665544 444454444  444433  223


Q ss_pred             cccccceEEEEEccCCCEEEEeec---CCcEEEeec
Q psy3639          80 RGHSAEVVGVTFSPDQSTFCSCSM---DHTARIFNT  112 (113)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~  112 (113)
                      ...........|+|||+.|+..+.   ...|+++++
T Consensus       210 ~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         210 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             eecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            224445567899999998875443   235666665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00019  Score=43.96  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeC---CCCeEEEEEEcCCCCCEEEEEe---------CCCcEEEEeCCc
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG---HQNVVYAVAFSEPYGDKILTGS---------FDKTLKLWASAK   72 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~---------~~~~v~~wd~~~   72 (113)
                      .|.++++++. -..+|.+.+||+.+++....+..   ....+....++ |+++.++...         ..+...++|+.+
T Consensus        23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC-CCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            3556666544 44577899999988765443432   22346677888 7777766543         246688899987


Q ss_pred             cccce--eecccccceEEEEEccCCCEEEEeecCCcEEEee
Q psy3639          73 EECIQ--TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN  111 (113)
Q Consensus        73 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~  111 (113)
                      +....  ........+....|||+|+.++-.. ++.|.+.+
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            75322  2222334555688999999987665 44555543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.53  E-value=0.00079  Score=39.03  Aligned_cols=67  Identities=7%  Similarity=0.016  Sum_probs=51.6

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC-EEEEEeCCCcEEEEeCC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASA   71 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~wd~~   71 (113)
                      ++++.+|+++++....+.|.+|+.+.++....+........+++|. ++++ ++++...+|.|...+..
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg-~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK-PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC-TTSSEEEEEETTTTEEEEEECS
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe-CCCCEEEEEECCCCcEEEEECC
Confidence            4577889988877778899999988777776776666678899998 5665 56677777888877764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=0.0021  Score=37.19  Aligned_cols=96  Identities=7%  Similarity=0.001  Sum_probs=63.1

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCC----CcEEEEeCCccccceee
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTY   79 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~v~~wd~~~~~~~~~~   79 (113)
                      .+|+++++++++-...+.|..|+..+++....+.........+++. +++.++++...+    +.+...+..........
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~  123 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDII  123 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEEC-CCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence            4678899988887788889889987766555555555667899999 778877765432    23444454444322222


Q ss_pred             cc--cccceEEEEEccCCCEEEE
Q psy3639          80 RG--HSAEVVGVTFSPDQSTFCS  100 (113)
Q Consensus        80 ~~--~~~~v~~~~~~~~~~~~~~  100 (113)
                      ..  .......+.+.++|++.++
T Consensus       124 ~~~~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1         124 EDLSTAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             CSSSSCCCEEEEEECTTSCEEEE
T ss_pred             cCCCcccCCcceeEEeccceeec
Confidence            21  1234677889999986655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.46  E-value=0.0026  Score=36.83  Aligned_cols=98  Identities=8%  Similarity=0.006  Sum_probs=65.4

Q ss_pred             ceEcCCCCEE-EeeecCCeEEEeeCCCC-eeeE-------EeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           4 PRVTSSPQRC-LTGSYDRTCKLWDIKSG-HEIC-------TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         4 ~~~~~~~~~~-~~~~~d~~v~i~~~~~~-~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      ++++++++.+ ++-+..+.|..|++... ....       ...........+++. .+++++++....+.|..+|. .++
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p-~G~  259 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNK-RGY  259 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECT-TSC
T ss_pred             eeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECC-CCc
Confidence            5788998854 55566788999987532 1111       111122335678888 78998888888999999995 676


Q ss_pred             cceeeccc------ccceEEEEEccCCCEEEEeec
Q psy3639          75 CIQTYRGH------SAEVVGVTFSPDQSTFCSCSM  103 (113)
Q Consensus        75 ~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~  103 (113)
                      .+..+...      ...+.+++|.+.++.+++...
T Consensus       260 ~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         260 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            66655422      234678999988877766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0055  Score=33.94  Aligned_cols=80  Identities=19%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             eEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CC--cEEEEeCCccccceeecccccceEEEEEccCCCE
Q psy3639          21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DK--TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST   97 (113)
Q Consensus        21 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~--~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (113)
                      .|.+.|.. |.....+......+...+|+ |+|+.++-... .+  .+.+.+...+. ...+..+........|+|+|..
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeecccccceecCCCCe
Confidence            57777866 54444554467778899999 78888775444 33  35455555544 3344445667778999999998


Q ss_pred             EEEeec
Q psy3639          98 FCSCSM  103 (113)
Q Consensus        98 ~~~~~~  103 (113)
                      ++....
T Consensus        97 i~~~~~  102 (269)
T d2hqsa1          97 LAFALS  102 (269)
T ss_dssp             EEEEEC
T ss_pred             eeEeee
Confidence            876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.92  E-value=0.011  Score=33.78  Aligned_cols=97  Identities=9%  Similarity=0.034  Sum_probs=66.2

Q ss_pred             ceEcCCCCEE-EeeecCCeEEEeeCCCC------ee--eEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccc
Q psy3639           4 PRVTSSPQRC-LTGSYDRTCKLWDIKSG------HE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE   74 (113)
Q Consensus         4 ~~~~~~~~~~-~~~~~d~~v~i~~~~~~------~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~   74 (113)
                      .+++++++.+ ++-+..+.|..|++...      +.  .....+.......+++. .++++.++.-..+.|..||. +++
T Consensus       153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp-~G~  230 (295)
T d2ghsa1         153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGN  230 (295)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCC
T ss_pred             eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecC-CCc
Confidence            4678888754 45566788888876421      11  11222344557788888 78888888778889999995 677


Q ss_pred             cceeecccccceEEEEEc-cCCCEEEEee
Q psy3639          75 CIQTYRGHSAEVVGVTFS-PDQSTFCSCS  102 (113)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  102 (113)
                      .+..+......+.+++|- |+.+.|.+.+
T Consensus       231 ~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            777777666678899995 6777665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.86  E-value=0.0067  Score=38.09  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc-eEEEEEccCCCE
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VVGVTFSPDQST   97 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~   97 (113)
                      |.+.-+|+.+++.+....... ++..-.+. ..+.++++++.||.++-+|..+++.+.+++..... -.-+.|..+|+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~ls-tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeE-EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            557777888887776665322 22211122 33567778999999999999999999888743321 112566678864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.48  E-value=0.011  Score=32.73  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=33.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEe
Q psy3639          53 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        53 ~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                      |+.++-. .++.|.+.|+..++. ..+..........+|||||+.|+..
T Consensus        12 G~~v~f~-~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          12 GDRIIFV-CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CCEEEEE-eCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEE
Confidence            6665544 345688889988764 4555556677889999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.43  E-value=0.031  Score=32.54  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             eEcCCCCEEEeeecCC-----------eEEEeeCCCCee--eEEe-eCCCCeEEEEEEcCCCCCEEEEEeCC-CcEEEEe
Q psy3639           5 RVTSSPQRCLTGSYDR-----------TCKLWDIKSGHE--ICTY-RGHQNVVYAVAFSEPYGDKILTGSFD-KTLKLWA   69 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~-----------~v~i~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~-~~v~~wd   69 (113)
                      ....+++.++.|+.+.           .+.+||..++.-  .... ..+........+. +++.+++.|+.+ ..+.+||
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCEEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe-cCCcEEEeecCCCcceeEec
Confidence            3455778888777421           266899887642  1122 1222223344566 778888887665 5799999


Q ss_pred             CCccccceeeccc-ccceEEEEEccCCCEEEEeecC------CcEEEeec
Q psy3639          70 SAKEECIQTYRGH-SAEVVGVTFSPDQSTFCSCSMD------HTARIFNT  112 (113)
Q Consensus        70 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~  112 (113)
                      ..+......-... ...-...+..++|+.++.++.+      ..+.+||.
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~  154 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  154 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecC
Confidence            8776432221111 1122346667789988887653      35677765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.31  E-value=0.0092  Score=37.39  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce-EEEEEccCCCE
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-VGVTFSPDQST   97 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~   97 (113)
                      |.+.-+|+.+++.+....... +...-.+. ..+.++++++.||.++.+|..+++.+.++....... .-+.|..+|+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls-tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEE-EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            457788999999887765322 11111122 346778889999999999999999998876432211 11455567763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.21  E-value=0.019  Score=35.97  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=46.9

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc-eEEEEEccCCCEE
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VVGVTFSPDQSTF   98 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~   98 (113)
                      |.+.-+|+.+++.+....... +...-.+. ..+.++++++.||.++.+|.++++.+.++...... -.-+.|..+|+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~-TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLY-TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeE-ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            356667777777665554211 11111111 23567778999999999999999999887643221 1225566678743

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.19  E-value=0.03  Score=34.99  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccce-EEEEEccCCCE
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-VGVTFSPDQST   97 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~   97 (113)
                      |.+.-+|+.+++.+..+.. ..+...-.+. ..+.+++.++.||.++.+|..+++.+.+++...... .-+.|..+|+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4567788888887766542 2222111222 235677789999999999999999998887432211 12555567863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.059  Score=32.31  Aligned_cols=95  Identities=13%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             ceEcCCCCEEEee-----ecCCeEEEeeCCCCeeeE-EeeCCCCeEEEEEEcCCCCCEEEEEeCC---------------
Q psy3639           4 PRVTSSPQRCLTG-----SYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSFD---------------   62 (113)
Q Consensus         4 ~~~~~~~~~~~~~-----~~d~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------   62 (113)
                      .+++|++++++.+     ++...++++|+.+++.+. .+..  .....+.|. +++..++....+               
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~-~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWT-HDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEEC-TTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEc-CCCCEEEEEEeccccCcccccccccCC
Confidence            4679999988743     234568899999998654 2221  111467888 666666543322               


Q ss_pred             -CcEEEEeCCcccc--ceeeccc--ccceEEEEEccCCCEEEEe
Q psy3639          63 -KTLKLWASAKEEC--IQTYRGH--SAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        63 -~~v~~wd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~~~~  101 (113)
                       ..+..+.+.+...  ...+...  ...+..+..++++++++..
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence             2466676665432  2233322  2345567788899987643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.83  E-value=0.0098  Score=37.52  Aligned_cols=76  Identities=16%  Similarity=0.204  Sum_probs=48.1

Q ss_pred             CeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccc-eEEEEEccCCCE
Q psy3639          20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VVGVTFSPDQST   97 (113)
Q Consensus        20 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~   97 (113)
                      |.+.-||..+++.+..... ..+...-.+. ..+.+++.|+.||.++.+|..+++.+.++...... -.-+.|..+|+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~ls-TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMA-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeE-ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            4677778888877655432 1221111222 23567778999999999999999999888643221 112455567764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.57  E-value=0.081  Score=30.05  Aligned_cols=106  Identities=10%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             eEcCCCCEEEeeec----CCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCC-EEEEEeCCCcEEEEeCCccc-----
Q psy3639           5 RVTSSPQRCLTGSY----DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEE-----   74 (113)
Q Consensus         5 ~~~~~~~~~~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~wd~~~~~-----   74 (113)
                      .+.++|++.++...    .+.-.+|....++....... ......+.++ +++. ++++-+..+.|..+++....     
T Consensus       109 ~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s-~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         109 RMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             EECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             EECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeec-CCCceEEEeecccceeeEeeeccccccccc
Confidence            45677776554332    12234555555554443332 2335688898 5555 55566667888888764321     


Q ss_pred             -c--ceeecccccceEEEEEccCCCEEEEeecCCcEEEeec
Q psy3639          75 -C--IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT  112 (113)
Q Consensus        75 -~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  112 (113)
                       .  ...........-.+++..+|++.++....+.|..||-
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             ceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence             1  1112223445677889999987766666777887763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.54  E-value=0.11  Score=32.41  Aligned_cols=50  Identities=12%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.+.-+|+.+++.+.+.... .+...-..+..+.+++.++.||.++.+|.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~  487 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECC
Confidence            34666777777766555422 122222233456778889999999999863

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.52  E-value=0.13  Score=32.11  Aligned_cols=49  Identities=12%  Similarity=0.147  Sum_probs=29.2

Q ss_pred             cEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        64 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      .+.-||+.+++.+.+.+... +...-..+..|..++.++.|+.++.+|.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~  506 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECC
Confidence            35556666666555544221 11111223367788889999999999863

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.29  E-value=0.14  Score=31.15  Aligned_cols=29  Identities=17%  Similarity=0.472  Sum_probs=23.2

Q ss_pred             ceEEEEEccCCCEEEEeec-CCcEEEeecC
Q psy3639          85 EVVGVTFSPDQSTFCSCSM-DHTARIFNTM  113 (113)
Q Consensus        85 ~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~  113 (113)
                      ..+.+..+|||+++++++. +.++.++|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            3467899999999877655 7889999873

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.70  E-value=0.25  Score=30.87  Aligned_cols=50  Identities=8%  Similarity=0.046  Sum_probs=29.5

Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.+.-+|+.+++.+.+..... +..+-..+..+..+++++.|+.++.+|.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~  493 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECC
Confidence            346667777776665544221 11111122346677789999999998863

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.57  E-value=0.2  Score=29.12  Aligned_cols=103  Identities=8%  Similarity=0.169  Sum_probs=68.9

Q ss_pred             eEcCCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCcc-ccceeeccc-
Q psy3639           5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGH-   82 (113)
Q Consensus         5 ~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~-~~~~~~~~~-   82 (113)
                      -++|..+.++.-+ ...+.+||+++.+.++.+. ...+|..=.|-.  .+.++..+ +..|+-|++... .+...+..+ 
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            3678888887765 4689999999999988887 556788888872  33443333 357999998532 344444433 


Q ss_pred             ---ccceEEEEEccCCCEEEEeec-------CCcEEEeec
Q psy3639          83 ---SAEVVGVTFSPDQSTFCSCSM-------DHTARIFNT  112 (113)
Q Consensus        83 ---~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~~  112 (113)
                         +..|-+...+++.++++..+-       .|.+.+|..
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~  183 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  183 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe
Confidence               346777788889998765322       245555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.27  Score=27.45  Aligned_cols=109  Identities=14%  Similarity=-0.040  Sum_probs=62.4

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeC-CCcEEEEeCCccccceeecc
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLWASAKEECIQTYRG   81 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~wd~~~~~~~~~~~~   81 (113)
                      .++++.+. ++.+-...+.|.+.++..................+++.|..+.++.+-.. .+.|.-.++...........
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            35555444 44455566788888887555444455555667889999666666655432 34565555544332222222


Q ss_pred             cccceEEEEEccCCCEEEEe-ecCCcEEEeec
Q psy3639          82 HSAEVVGVTFSPDQSTFCSC-SMDHTARIFNT  112 (113)
Q Consensus        82 ~~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~  112 (113)
                      .-.....+++++.++.|..+ ...+.|...++
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence            23445778888866665554 33456655543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.69  E-value=0.27  Score=27.44  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=60.1

Q ss_pred             ceEcCCCC-EEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEE--eCCccccceeec
Q psy3639           4 PRVTSSPQ-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW--ASAKEECIQTYR   80 (113)
Q Consensus         4 ~~~~~~~~-~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~w--d~~~~~~~~~~~   80 (113)
                      +++++.+. ++.+-...+.|.+.++........+.........+++.|..+..+.+-...+..+++  ++..........
T Consensus        84 iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~  163 (263)
T d1npea_          84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ  163 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred             EEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee
Confidence            34555444 444555567788888764443333333345678999996666666554433333444  443332222222


Q ss_pred             ccccceEEEEEccCCCEEEEe-ecCCcEEEeec
Q psy3639          81 GHSAEVVGVTFSPDQSTFCSC-SMDHTARIFNT  112 (113)
Q Consensus        81 ~~~~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~  112 (113)
                      ..-.....+++++.++.|..+ ...+.|...|+
T Consensus       164 ~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence            222455788888877766554 34566766554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.28  E-value=0.32  Score=27.10  Aligned_cols=97  Identities=8%  Similarity=-0.001  Sum_probs=58.2

Q ss_pred             eEcCCCCEEE-eeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccc
Q psy3639           5 RVTSSPQRCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS   83 (113)
Q Consensus         5 ~~~~~~~~~~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~   83 (113)
                      ++++..+.+. +-..++.|+..++..+.....+......+..+++....+.+.++-...+.|...++.............
T Consensus        42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l  121 (263)
T d1npea_          42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL  121 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccc
Confidence            4555555444 444567777777765544444443345678888874445555566667789998886554322233233


Q ss_pred             cceEEEEEccCCCEEEEe
Q psy3639          84 AEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~  101 (113)
                      .....++.+|...++...
T Consensus       122 ~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             SSEEEEEEETTTTEEEEE
T ss_pred             cCCcEEEEecccCcEEEe
Confidence            456788898866655543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.14  E-value=0.41  Score=27.81  Aligned_cols=68  Identities=10%  Similarity=0.041  Sum_probs=50.4

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEE
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI  109 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  109 (113)
                      ..-.++..+ +....++..++-|.+++||+.++.++...+-....|..-+-..+..-++....+|.+.-
T Consensus       256 DFPvamqvs-~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         256 DFPVAMQIS-EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CCEEEEEEE-TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CcEEEEEee-ccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            345667777 55567788889999999999999999888866777775555555556777777777653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.25  E-value=1  Score=28.12  Aligned_cols=50  Identities=8%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.+.-+|+.+++.+.+.... .++..-..+..+..++.++.||.++.+|.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~  515 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECC
Confidence            45666777777766655532 222221233467788889999999999863

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.72  E-value=1.2  Score=26.47  Aligned_cols=90  Identities=9%  Similarity=0.033  Sum_probs=57.3

Q ss_pred             CCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeec-----ccc
Q psy3639           9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-----GHS   83 (113)
Q Consensus         9 ~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~-----~~~   83 (113)
                      +++.++... ++.+..++..+-...........++..+.++ +  ..++....++.+.++++..++......     .-.
T Consensus        95 s~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~  170 (381)
T d1xipa_          95 HGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNV-N--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVT  170 (381)
T ss_dssp             ETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEEC-S--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEEC
T ss_pred             eCCEEEEEe-CCCEEEEEeeccccccccccccccccceecC-C--ceeEEEecCCCEEEEEeccCccccccCCcceEEec
Confidence            444555543 4557777766544444444456678888887 3  456777888999999987765322211     113


Q ss_pred             cceEEEEEccCCCEEEEee
Q psy3639          84 AEVVGVTFSPDQSTFCSCS  102 (113)
Q Consensus        84 ~~v~~~~~~~~~~~~~~~~  102 (113)
                      +.+.++.|++.|..++++.
T Consensus       171 ~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         171 NSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSEEEEEETTSCEEEEEEE
T ss_pred             CCceEEEEeCCcEEEEEeC
Confidence            5577888988888777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.02  E-value=1.4  Score=26.51  Aligned_cols=47  Identities=19%  Similarity=0.012  Sum_probs=32.2

Q ss_pred             ceEcCCCCEEEeeecCCeEEEeeCCCCeeeE--Eee------CCCCeEEEEEEcC
Q psy3639           4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEIC--TYR------GHQNVVYAVAFSE   50 (113)
Q Consensus         4 ~~~~~~~~~~~~~~~d~~v~i~~~~~~~~~~--~~~------~~~~~v~~~~~~~   50 (113)
                      +++.|+++++++.-..|.|++++..++....  .+.      .-......++++|
T Consensus        32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            5688999988877557899999877665322  211      1234578899985

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.59  E-value=1.5  Score=25.08  Aligned_cols=62  Identities=10%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             CCCCEEEEEeCCC-----------cEEEEeCCccccce--eec-ccccceEEEEEccCCCEEEEeecC-CcEEEeec
Q psy3639          51 PYGDKILTGSFDK-----------TLKLWASAKEECIQ--TYR-GHSAEVVGVTFSPDQSTFCSCSMD-HTARIFNT  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~-----------~v~~wd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~  112 (113)
                      .+++.++.|+.+.           .+.+||+.+++...  ... .+........+.++|.+++.++.+ ..+.+||.
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            5667777666421           26789998765432  221 122223456778899988887654 57888875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=1.5  Score=24.23  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=37.7

Q ss_pred             CeEEEEEEcCCCCCEEEEEeCCCcEEEEeCCccccceeecccccceEEEEEccCCCEEEEe
Q psy3639          41 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        41 ~~v~~~~~~~~~~~~~~~~~~~~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                      ..+..+++.+..+.+.++-...+.|.+.++..................++.+|...++...
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence            3455677764455555665667789999887655434344344556788888855555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.90  E-value=2.1  Score=25.08  Aligned_cols=102  Identities=13%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             CCCCEEEeeecCCeEEEeeCCCCeeeEEeeCCCCeEEEEEEcC-----CCCCEEEEEe-C-C--CcEEEEeCCc-cccce
Q psy3639           8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-----PYGDKILTGS-F-D--KTLKLWASAK-EECIQ   77 (113)
Q Consensus         8 ~~~~~~~~~~~d~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~-~-~--~~v~~wd~~~-~~~~~   77 (113)
                      |+..+++.....+-+++||+. |+.++.+..  +.+..+....     .....++.++ . +  .++.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345567766677779999985 887776642  3444444330     1122233333 2 2  3577776532 11222


Q ss_pred             eecc-------cccceEEEEE--cc-CCC-EEEEeecCCcEEEeec
Q psy3639          78 TYRG-------HSAEVVGVTF--SP-DQS-TFCSCSMDHTARIFNT  112 (113)
Q Consensus        78 ~~~~-------~~~~v~~~~~--~~-~~~-~~~~~~~~~~i~~~~~  112 (113)
                      .+..       ....++.+++  ++ +|. ++++...+|.+..|.+
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l  160 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYEL  160 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEE
Confidence            2211       1124566666  55 354 4566677888887754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.33  E-value=0.59  Score=29.36  Aligned_cols=50  Identities=10%  Similarity=0.034  Sum_probs=31.2

Q ss_pred             CcEEEEeCCccccceeecccccceEEEEEccCCCEEEEeecCCcEEEeecC
Q psy3639          63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM  113 (113)
Q Consensus        63 ~~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  113 (113)
                      |.+.-||+.+++.+...... .+...-..+..|..++.++.||.++.+|.+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~  502 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECC
Confidence            45777777777765544321 122211223457778889999999999863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.03  E-value=3.1  Score=24.62  Aligned_cols=58  Identities=14%  Similarity=0.102  Sum_probs=36.1

Q ss_pred             eEEEEEEcCCCCCEEE-EEeCCC----cEEEEeCCccccceeecccccceEEEEEccCCCEEEEe
Q psy3639          42 VVYAVAFSEPYGDKIL-TGSFDK----TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC  101 (113)
Q Consensus        42 ~v~~~~~~~~~~~~~~-~~~~~~----~v~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  101 (113)
                      .+....++ |+++.++ +.+.+|    .++++|+.+++.+...- .......+.|.+++..|+-.
T Consensus       126 ~~~~~~~S-pd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         126 ALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEE
T ss_pred             eecceEec-CCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEE
Confidence            34566777 6666655 444444    59999999997654221 11122458899999877543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=82.26  E-value=3.7  Score=25.01  Aligned_cols=95  Identities=6%  Similarity=-0.080  Sum_probs=58.0

Q ss_pred             CCCEEEee-ecCCeEEEeeCCCCeeeEEeeC-CCCeEEEEEEcC-CCCCEEEEEeCCC------------------cEEE
Q psy3639           9 SPQRCLTG-SYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSE-PYGDKILTGSFDK------------------TLKL   67 (113)
Q Consensus         9 ~~~~~~~~-~~d~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~~~~~------------------~v~~   67 (113)
                      +|+++.+. ..+.+|.+-|+++.+..+.+.. .......++..+ ++..+++..+...                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            46655554 3577788888888876554432 233445555431 3445665555422                  2556


Q ss_pred             EeCCccccceeecccccceEEEEEccCCCEEEEeecC
Q psy3639          68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMD  104 (113)
Q Consensus        68 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  104 (113)
                      .|..+.+...+.... +....+.++++|+++++.+.+
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred             EecCCceEEEEeeeC-CChhccccCCCCCEEEEEecc
Confidence            787777655555432 345578999999999887654