Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 78
PLN00172 147
PLN00172, PLN00172, ubiquitin conjugating enzyme;
8e-07 cd00195 141
cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca
1e-04 COG5078 153
COG5078, COG5078, Ubiquitin-protein ligase [Posttr
1e-04 pfam00179 139
pfam00179, UQ_con, Ubiquitin-conjugating enzyme
2e-04
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional
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Score = 43.2 bits (101), Expect = 8e-07
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ KRIQKE ++ DPP NCSAGP +N
Sbjct: 2 ATKRIQKEHKDLLKDPPSNCSAGPSDEN 29
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain
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Score = 37.6 bits (88), Expect = 1e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDN 35
KR+QKEL ++ DPP SA P +N
Sbjct: 2 KRLQKELKDLKKDPPSGISAEPVEEN 27
This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
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Score = 37.6 bits (88), Expect = 1e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ KR+ KEL ++ DPPP SAGP D+
Sbjct: 4 PSALKRLLKELKKLQKDPPPGISAGPVDDD 33
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme
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Score = 36.4 bits (85), Expect = 2e-04
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 11 RIQKELAEITLDPPPNCSAGPKGDN 35
R+QKEL E+ DPPP SA P DN
Sbjct: 1 RLQKELKELLKDPPPGISAFPVDDN 25
Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
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Probab=99.93 E-value=5.2e-26 Score=147.28 Aligned_cols=70 Identities=29% Similarity=0.480 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
|.+||++|+++|++++++++++.+.++ |+++ .++ |++||||||+|++.|.||++||++||+| ++|||+|+
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 899999999999999999999999887 9988 444 9999999999999999999999999999 59999997
>KOG0417|consensus
Back Show alignment and domain information
Probab=99.92 E-value=1.4e-25 Score=143.77 Aligned_cols=70 Identities=31% Similarity=0.581 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+.+||+||+++|..++++|+++.++++|+++ .++ |.+||||||+|+|.|.||++|||+||+| |+|+|+|+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 3569999999999999999999999999997 554 9999999999999999999999999999 69999997
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=2.1e-24 Score=139.46 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
++.+||++|+++|.+++++|+.+.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 46899999999999999999999999899987 444 9999999999999999999999999999 59999986
>PLN00172 ubiquitin conjugating enzyme; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=1.1e-23 Score=135.44 Aligned_cols=70 Identities=29% Similarity=0.518 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
|.+||+||+++|++++++++.+.++++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+|+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 3699999999999999999999999999988 444 9999999999999999999999999999 59999986
>KOG0418|consensus
Back Show alignment and domain information
Probab=99.89 E-value=1.5e-23 Score=138.68 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHhcCC---CCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeecc
Q psy3659 5 LSTSAKRIQKELAEITLDP---PPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWN 74 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~---~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~ 74 (78)
|+.+.+||++|++++..++ ..+|.+...++|+.+ ... |++||||||+|.+.|++|++|||+||+| +||||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 3448899999999999987 678999988888887 333 9999999999999999999999999999 59999
Q ss_pred ccC
Q psy3659 75 FSL 77 (78)
Q Consensus 75 ~~~ 77 (78)
+|+
T Consensus 81 PnV 83 (200)
T KOG0418|consen 81 PNV 83 (200)
T ss_pred CCC
Confidence 996
>KOG0419|consensus
Back Show alignment and domain information
Probab=99.84 E-value=5.2e-21 Score=121.02 Aligned_cols=72 Identities=14% Similarity=0.305 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
..|.+||+++++.|+++++.||++.|.++|++. .++ |++|||+||+|+|.|+|+++||.+||.| ++..|+|+
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv 81 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV 81 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence 468999999999999999999999999999987 333 9999999999999999999999999999 48899986
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]
Back Show alignment and domain information
Probab=99.83 E-value=5.9e-21 Score=120.77 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 11 RIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 11 Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
||++|+++++++++.|+.+.+.++ |+++ .++ |.+|||+||.|++.|.||++||++||+| +++||+++
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni 75 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNI 75 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccc
Confidence 899999999999999999998776 8887 433 8999999999999999999999999999 59999987
Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain
Back Show alignment and domain information
Probab=99.82 E-value=3.2e-20 Score=117.65 Aligned_cols=69 Identities=26% Similarity=0.434 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccCC
Q psy3659 10 KRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSLE 78 (78)
Q Consensus 10 ~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~~ 78 (78)
+||++|+++++++++.|+++.+.++|+++ .++ |++|||+||.|+++|.||++||++||+| +++||+++.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 79999999999999999999999889987 443 7899999999999999999999999999 499999873
This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
>KOG0426|consensus
Back Show alignment and domain information
Probab=99.82 E-value=2.6e-20 Score=118.19 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCC-CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcce---eeccccC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKG-DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERNE---RFWNFSL 77 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~-~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v~---~~w~~~~ 77 (78)
..|.+||++|+++|.+++++||.+.|.+ ||++. .|+ |++|+|+||+|..++.||.|||.+||+++ .+.|+|+
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 4689999999999999999999999864 68887 665 99999999999999999999999999995 8889875
>KOG0421|consensus
Back Show alignment and domain information
Probab=99.80 E-value=1.9e-19 Score=115.49 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCeeee----cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccCC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGIPCT----TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSLE 78 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~~~~----P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~~ 78 (78)
+..+||++||..|.....+||+++|++|||+.|+. |.+|+|+|-.|++.+.||.+||++||+| +--||+||.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD 107 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD 107 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence 56899999999999999999999999999998543 9999999999999999999999999999 488999974
>KOG0894|consensus
Back Show alignment and domain information
Probab=99.80 E-value=1.4e-19 Score=122.19 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe--eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcce
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI--PCT--TTRARYALDIFTVKQGLRYHFCLRPERNE 70 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~--~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v~ 70 (78)
...|.+||+||++.|+++|.++|.+.|..+||++ .|+ |++|||+||.|+.+|.||.+||++||.|+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~ 72 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAIT 72 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeE
Confidence 3578999999999999999999999999999987 455 99999999999999999999999999993
>KOG0425|consensus
Back Show alignment and domain information
Probab=99.79 E-value=3e-19 Score=115.60 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+..-|+++|++|++.+.+|+.+...++ |++. .+. |.+|+|+||.|+..+.||.+||++||++ +++||+|+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 667789999999999999999987665 8987 332 9999999999999999999999999999 49999996
>KOG0422|consensus
Back Show alignment and domain information
Probab=99.79 E-value=1.5e-19 Score=115.09 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCeee-e--cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccCC
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAG-PKGDNPGIPC-T--TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSLE 78 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~~~-~--P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~~ 78 (78)
+.+.+||+|||.+|++++...+... .+++|+..|. . |++.||..|.|+++|+||.+|||+||+| +||+|+|+.
T Consensus 1 m~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 1 MAAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred CchhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3578999999999999988876554 4556877633 2 9999999999999999999999999999 699999973
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Back Show alignment and domain information
Probab=99.77 E-value=7.4e-19 Score=111.83 Aligned_cols=68 Identities=28% Similarity=0.427 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEccCCC-CCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 10 KRIQKELAEITLDPPPNCSAGPKGD-NPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 10 ~Rl~kEl~~l~~~~~~~i~~~p~~~-nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
+||++|+++++++.++|+.+.+.++ |++. .++ |++|||+||.|++.|.||++||++||+| +++||+++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i 76 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNV 76 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeE
Confidence 5999999999999999999888765 8877 444 9999999999999999999999999999 49999876
Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
>KOG0424|consensus
Back Show alignment and domain information
Probab=99.74 E-value=1e-17 Score=107.20 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCC-----CCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcce---eec
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKG-----DNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERNE---RFW 73 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~-----~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v~---~~w 73 (78)
+.+..||+.|.+.++++.+-|+++.|.. .||+. +|. +.+|+||||.|+|.+.||++||++||+|+ -+.
T Consensus 3 ~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~ 82 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLF 82 (158)
T ss_pred chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCc
Confidence 4579999999999999999999998753 27777 666 89999999999999999999999999993 889
Q ss_pred cccC
Q psy3659 74 NFSL 77 (78)
Q Consensus 74 ~~~~ 77 (78)
|+||
T Consensus 83 HPNV 86 (158)
T KOG0424|consen 83 HPNV 86 (158)
T ss_pred CCCc
Confidence 9987
>KOG0420|consensus
Back Show alignment and domain information
Probab=99.63 E-value=9.6e-16 Score=100.55 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCeEE-c---cCCCCCCe-ee-e-cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eee
Q psy3659 3 KALSTSAKRIQKELAEITLDPPPNCSA-G---PKGDNPGI-PC-T-TTRARYALDIFTVKQGLRYHFCLRPERN---ERF 72 (78)
Q Consensus 3 ~~~~~~~~Rl~kEl~~l~~~~~~~i~~-~---p~~~nl~~-~~-~-P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~ 72 (78)
.+.+.+..||++|+.++.. ++++++ . +++-+... .. + |+++.|+||.|+|++++|+.||++||+| +++
T Consensus 24 ~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred ccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 3467789999999988874 445543 1 22223323 22 3 9999999999999999999999999999 599
Q ss_pred ccccC
Q psy3659 73 WNFSL 77 (78)
Q Consensus 73 w~~~~ 77 (78)
||+|+
T Consensus 102 ~HPNI 106 (184)
T KOG0420|consen 102 YHPNI 106 (184)
T ss_pred ccCCc
Confidence 99986
>KOG0416|consensus
Back Show alignment and domain information
Probab=99.62 E-value=9.1e-16 Score=100.64 Aligned_cols=71 Identities=10% Similarity=0.249 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
|++..|||..|+..|... +..+...++++.+ .+. |.+|||+||+|+++|++|++||++.|.| +||.|+|+
T Consensus 1 ms~~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred CCCcccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 456789999999998765 3455556676776 332 9999999999999999999999999999 69999997
Q ss_pred C
Q psy3659 78 E 78 (78)
Q Consensus 78 ~ 78 (78)
+
T Consensus 78 D 78 (189)
T KOG0416|consen 78 D 78 (189)
T ss_pred h
Confidence 4
>KOG0427|consensus
Back Show alignment and domain information
Probab=99.61 E-value=2.1e-15 Score=95.71 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCeeee----cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGIPCT----TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 5 ~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~~~~----P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
+..+.+|||||+.+|+.++|.|+... ..|||..|.+ .++|.|+|.+|.|.++||+.|||+.|+|
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV 80 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV 80 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence 45689999999999999999999887 5678877443 8999999999999999999999999998
>KOG0428|consensus
Back Show alignment and domain information
Probab=99.58 E-value=2.9e-15 Score=103.30 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe--eee--cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 4 ALSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI--PCT--TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 4 ~~~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~--~~~--P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
-.+++.+||+||.++|+ ++...+.+.|.+|||++ +.+ |.+|-|+||+|+.+|.||.||||+||.+
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~ 76 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSI 76 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeE
Confidence 35689999999999998 78788889999999998 334 9999999999999999999999999998
>KOG0423|consensus
Back Show alignment and domain information
Probab=99.54 E-value=5.1e-15 Score=97.70 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eee---cCCCCCCCCeEEEEEEcCCCCCCCCCcc---eeeccccC
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCT---TTRARYALDIFTVKQGLRYHFCLRPERN---ERFWNFSL 77 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~---P~~tpYegg~f~l~i~fp~~YP~~PP~v---~~~w~~~~ 77 (78)
...+-++||++.|..+++.||.+.++++|+.. .+. |.+|||++|.|+.++.+..|||++||+- ++|.|+||
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV 87 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV 87 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence 46788999999999999999999999998887 332 9999999999999999999999999998 59999987
>KOG0895|consensus
Back Show alignment and domain information
Probab=98.81 E-value=1.1e-08 Score=81.17 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe---eee-cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 6 STSAKRIQKELAEITLDPPPNCSAGPKGDNPGI---PCT-TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 6 ~~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~---~~~-P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
....+|+++|++.+.++.++++.+.+.+..+.. ..+ |+++||++|.|.+.|.||..||..||.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v 348 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHV 348 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCcee
Confidence 457899999999999999999999988775543 333 9999999999999999999999999999
>KOG0895|consensus
Back Show alignment and domain information
Probab=98.66 E-value=3.1e-08 Score=78.74 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCC--CCCe-eee-cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGD--NPGI-PCT-TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~--nl~~-~~~-P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
.++..+.|.+.|..+.+.+|.+...++ ||+. ..+ |.+|||++|.|.|.|.||++||..||.|
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~ 917 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLV 917 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCce
Confidence 344556677777778889998887776 7777 444 9999999999999999999999999999
>KOG0429|consensus
Back Show alignment and domain information
Probab=98.52 E-value=3.9e-07 Score=62.41 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCCeEEccCCCC-CCeeee--cCCCCCCCCeEEEEEEcCCCCC--CCCCcc---eeeccc
Q psy3659 11 RIQKELAEITLDPPPNCSAGPKGDN-PGIPCT--TTRARYALDIFTVKQGLRYHFC--LRPERN---ERFWNF 75 (78)
Q Consensus 11 Rl~kEl~~l~~~~~~~i~~~p~~~n-l~~~~~--P~~tpYegg~f~l~i~fp~~YP--~~PP~v---~~~w~~ 75 (78)
-|..|+..+.+.+.+||++.|.-.| |++.++ -..+.|+||+|+++|-+|++|| .+-|+| +.+-|+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 4778888999899999999997665 566554 8999999999999999999999 556777 345554
>KOG0896|consensus
Back Show alignment and domain information
Probab=97.89 E-value=3.2e-05 Score=49.31 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEcc-CCCCCCe--ee---e-cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 9 AKRIQKELAEITLDPPPN-CSAGP-KGDNPGI--PC---T-TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 9 ~~Rl~kEl~~l~~~~~~~-i~~~p-~~~nl~~--~~---~-P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
.-||..|+..=++.--++ ++-.. +++|++- |. + |..|+||+-+|.|+|....+||-.||.|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~v 75 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTV 75 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCcee
Confidence 456777777665554343 22222 2345532 33 2 9999999999999999999999999999
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)
Back Show alignment and domain information
Probab=95.82 E-value=0.028 Score=33.20 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEccCCCCC--Ceeee----cCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 9 AKRIQKELAEITLDPPPNCSAGPKGDNP--GIPCT----TTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 9 ~~Rl~kEl~~l~~~~~~~i~~~p~~~nl--~~~~~----P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
..+...|+..|..--+..+ ......+- ....+ ...+.-....+.|.|.||++||..+|.+
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i 68 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKI 68 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EE
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEE
Confidence 4466778888876444433 11111111 11111 2344444568999999999999999998
; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
Back Show alignment and domain information
Probab=95.26 E-value=0.081 Score=30.98 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=18.9
Q ss_pred CCeEEEEEEcCCCCCCCCCcc
Q psy3659 49 LDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 49 gg~f~l~i~fp~~YP~~PP~v 69 (78)
.-.+.|.+.||.+||..+|.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i 60 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPI 60 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCe
Confidence 346899999999999999998
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Back Show alignment and domain information
Probab=93.75 E-value=0.065 Score=33.60 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCCeEEEEEEcCCCCCCCCCcc
Q psy3659 48 ALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 48 egg~f~l~i~fp~~YP~~PP~v 69 (78)
.++.+.+.|.||++||..||.|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v 55 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRV 55 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEE
Confidence 6889999999999999999999
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes
Back Show alignment and domain information
Probab=93.67 E-value=0.28 Score=31.91 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEc-cCCCCCCe-eeecCCCCCCC----------CeEEEEEEcCCCCCCCCCcc
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAG-PKGDNPGI-PCTTTRARYAL----------DIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~-p~~~nl~~-~~~P~~tpYeg----------g~f~l~i~fp~~YP~~PP~v 69 (78)
.-..||..|++.|-+. +... ..+++.+. ..-+++|-|.| ..|.+++++|..||..||.+
T Consensus 24 ~W~~RLKEEy~aLI~Y----v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKY----VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHHHHH----HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence 3578999999987542 1110 12223333 22256666554 25789999999999999988
Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)
Back Show alignment and domain information
Probab=92.08 E-value=0.16 Score=31.57 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.6
Q ss_pred CCCCeE--EEEEEcCCCCCCCCCcc
Q psy3659 47 YALDIF--TVKQGLRYHFCLRPERN 69 (78)
Q Consensus 47 Yegg~f--~l~i~fp~~YP~~PP~v 69 (78)
|+|..| -+.|-+|.+||..||.|
T Consensus 43 y~g~~y~iPi~Iwlp~~yP~~pP~v 67 (121)
T PF05743_consen 43 YKGSTYNIPICIWLPENYPYSPPIV 67 (121)
T ss_dssp CTTCCEEEEEEEEE-TTTTTSSSEE
T ss_pred cCCcccceeEEEEEcccCCCCCCEE
Confidence 566555 78999999999999998
Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
>KOG3357|consensus
Back Show alignment and domain information
Probab=90.02 E-value=0.46 Score=30.59 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eeecCCCCCCC----------CeEEEEEEcCCCCCCCCCcc
Q psy3659 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCTTTRARYAL----------DIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 7 ~~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~P~~tpYeg----------g~f~l~i~fp~~YP~~PP~v 69 (78)
.-..||..|++.|-+.-..+ ...++|.+. ..-+++|-|-| ..|.+++.+|-.||..+|.+
T Consensus 27 ~wvqrlkeey~sli~yvqnn---k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQNN---KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhC---cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 34789999999886431111 011233333 22277777765 35788999999999999987
>KOG0897|consensus
Back Show alignment and domain information
Probab=85.09 E-value=0.71 Score=28.96 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCCCCCCcc
Q psy3659 52 FTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 52 f~l~i~fp~~YP~~PP~v 69 (78)
-.+.+.|+++||+.||-+
T Consensus 13 ill~~~f~~~fp~~ppf~ 30 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFP 30 (122)
T ss_pred eEeeeecccCCCCCCCcc
Confidence 467889999999999988
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Back Show alignment and domain information
Probab=84.30 E-value=1.7 Score=27.38 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=24.1
Q ss_pred CCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 43 TRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 43 ~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
..+.|+...=.+-|.+|..||..+|.+
T Consensus 35 P~G~y~~~~~dili~iP~gYP~~~~Dm 61 (122)
T PF14462_consen 35 PEGKYNHNEVDILILIPPGYPDAPLDM 61 (122)
T ss_pred CCCccCccceEEEEECCCCCCCCCCCc
Confidence 455699999999999999999999876
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL
Back Show alignment and domain information
Probab=83.22 E-value=1.8 Score=30.81 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEccCCCCCCe-eeecCCCCCCCCeEEEEEEcCCCCCCCCCcc
Q psy3659 8 SAKRIQKELAEITLDPPPNCSAGPKGDNPGI-PCTTTRARYALDIFTVKQGLRYHFCLRPERN 69 (78)
Q Consensus 8 ~~~Rl~kEl~~l~~~~~~~i~~~p~~~nl~~-~~~P~~tpYegg~f~l~i~fp~~YP~~PP~v 69 (78)
...+|.+|+.++..+..-.+. .++++.. ...-.++- ..-.++|.++.+||+.+|.+
T Consensus 100 ~ys~ll~EIe~IGW~kl~~i~---~d~~ls~i~l~~~D~~---R~H~l~l~l~~~yp~~~p~~ 156 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKLVQIQ---FDDDLSTIKLKIFDSS---RQHYLELKLPSNYPFEPPSC 156 (291)
T ss_dssp GC-CHHHHHHHHHCGCCEEEE---E-CCCSEEEEEEETTC---EEEEEEEETTTTTTTSEEEE
T ss_pred HHHHHHHHHHHhccccceEEe---cCCCccEEEEEEEcCC---ceEEEEEEECCCCCCCCcee
Confidence 456788888888766432221 1455655 33322222 46779999999999999987
FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 78
d1y6la_ 148
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H
5e-10 d2e2ca_ 156
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C
2e-08 d2f4wa1 157
d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,
1e-07 d1z3da1 149
d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U
3e-07 d2a7la1 117
d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2
4e-07 d2ucza_ 164
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B
4e-07 d1z2ua1 147
d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U
5e-07 d1ayza_ 153
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B
6e-07 d2fo3a1 109
d.20.1.1 (A:9-117) Putative ubiquitin-conjugating
8e-07 d1yrva1 148
d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U
9e-07 d1i7ka_ 146
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H
1e-06 d1pzva_ 161
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N
2e-06 d1yh2a1 154
d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U
2e-06 d1zdna1 151
d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U
2e-06 d1jata_ 152
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B
3e-06 d1c4zd_ 144
d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H
5e-06 d1j7db_ 149
d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H
5e-06 d1wzva1 150
d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U
5e-06 d1fzya_ 149
d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B
6e-06 d2uyza1 156
d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U
6e-06 d2awfa1 125
d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U
7e-06 d1y8xa1 157
d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,
2e-04 d1zuoa1 162
d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme
7e-04 d2bepa1 154
d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2
0.002
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148
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class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]
Score = 50.2 bits (119), Expect = 5e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
STSAKRIQKELAEITLDPPPNCSAGPKGDN
Sbjct: 1 STSAKRIQKELAEITLDPPPNCSAGPKGDN 30
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]
Score = 45.9 bits (108), Expect = 2e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 2 SKALSTSAKRIQKELAEITLDPPPNCSAGPKGDN 35
SK + +KR+Q+EL + + P +A P GDN
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPGITAFPDGDN 37
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-07
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDNPGIPCTTTRARYALDIFTVKQGLRYHFCLRP 66
T+ +R++++ I DP P A P N R + F
Sbjct: 1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60
Query: 67 ERNERFWNF 75
Sbjct: 61 PFKPPSIYM 69
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]
Score = 42.8 bits (100), Expect = 3e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ S +R+ ++ ++ DPP S P DN
Sbjct: 2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDN 31
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 4e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 5 LSTSAKRIQKELAEITLDPPPNCSAGPKGDNPGI 38
+++ KR+QKEL + DPPP + K I
Sbjct: 1 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSI 34
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]
Score = 42.5 bits (99), Expect = 4e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
T+ KR+ KEL ++ D PP AGPK +N
Sbjct: 2 KTAQKRLLKELQQLIKDSPPGIVAGPKSEN 31
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]
Score = 42.1 bits (98), Expect = 5e-07
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ KRIQKEL ++ DPP CSAGP GD+
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDD 29
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]
Score = 42.0 bits (98), Expect = 6e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + +R+ ++ + D PP SA P DN
Sbjct: 2 TPARRRLMRDFKRMKEDAPPGVSASPLPDN 31
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]
Score = 40.8 bits (95), Expect = 8e-07
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 11 RIQKELAEITLDPPPNCSAGPKGDNP 36
RIQKEL +PP NC+ +N
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPNNI 27
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]
Score = 41.3 bits (96), Expect = 9e-07
Identities = 2/30 (6%), Positives = 12/30 (40%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ + ++ ++ + +A P ++
Sbjct: 3 GRAYLLLHRDFCDLKENNYKGITAKPVSED 32
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]
Score = 40.9 bits (95), Expect = 1e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDNP 36
KR+Q+EL + + SA P+ DN
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAFPESDNL 30
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]
Score = 40.9 bits (95), Expect = 2e-06
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
S+ ++K+LA++ P SAG DN
Sbjct: 1 SSLLLKKQLADMRRVPVDGFSAGLVDDN 28
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]
Score = 40.6 bits (94), Expect = 2e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
A R+++EL + +PPP + D
Sbjct: 3 RASRLKRELHMLATEPPPGITCWQDKDQ 30
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]
Score = 40.5 bits (94), Expect = 2e-06
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDN 35
+ + KE+ +T DPP P ++
Sbjct: 9 RLVYKEVTTLTADPPDGIKVFPNEED 34
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]
Score = 40.1 bits (93), Expect = 3e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ KRI KE ++ DP P +A P DN
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDN 31
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]
Score = 39.4 bits (91), Expect = 5e-06
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 9 AKRIQKELAEITLDPPPNCSAGPKGDN 35
++R+ KEL EI N +
Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEA 27
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]
Score = 39.4 bits (91), Expect = 5e-06
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDN 35
+RI KE + +P P A P N
Sbjct: 5 RRIIKETQRLLAEPVPGIKAEPDESN 30
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]
Score = 39.4 bits (91), Expect = 5e-06
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 8 SAKRIQKELAEITLDPPPNCSAGPKGDN 35
++ R+ KEL ++ PPP D
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDA 28
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]
Score = 39.4 bits (91), Expect = 6e-06
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 7 TSAKRIQKELAEITLDPPPNCSAGPKGDN 35
+ AKRI KE+ + DP + + ++
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSES 29
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]
Score = 39.4 bits (91), Expect = 6e-06
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 10 KRIQKELAEITLDPPPNCSAGPKGDNPG 37
R+ +E D P A P + G
Sbjct: 5 SRLAQERKAWRKDHPFGFVAVPTKNPDG 32
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]
Score = 38.9 bits (90), Expect = 7e-06
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 11 RIQKELAEITLDPPPNCSAGPKGDN 35
++++LAE+ +P SAG DN
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDN 27
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]
Score = 35.4 bits (81), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 6 STSAKRIQKELAEITLDPPPNCSAGPKGD 34
S + RIQK++ E+ L + S D
Sbjct: 2 SAAQLRIQKDINELNLPKTCDISFSDPDD 30
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.7 bits (76), Expect = 7e-04
Identities = 7/71 (9%), Positives = 16/71 (22%), Gaps = 11/71 (15%)
Query: 6 STSAKRIQKELAEITLDPPPNC---SAGPKGDN--------PGIPCTTTRARYALDIFTV 54
++ R+ KEL +I S D+ + + +
Sbjct: 3 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 62
Query: 55 KQGLRYHFCLR 65
+
Sbjct: 63 EGIEYILLNFS 73
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]
Score = 32.5 bits (73), Expect = 0.002
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 1 MSKALSTSAKRIQKELAEITLDPPPN---CSAGPKGDN 35
M+ + + +RI++E E+ + +N
Sbjct: 1 MA---NIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 35
