Psyllid ID: psy3671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHccccEEEEcEEEcEEEEcccccccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHccccccccccHHccccccEEEEEcEEEccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEcccccccccEEEcccccEEEEEcEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEcccEEEEEEEEEcccccccEcccccEEEEccccccccEEEEEcccccccHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHcccccEEEEEEEEEccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEEEcccEEEEEEcccEcccccccccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
laeigkldtpkvqgkystgqlflhrVFGYRGIVLFpwlarvydrdipnkrdkpsdvngsvgkevkskTHTFYQVLIdsrdcpyirAQTEAVTFLgnqnsnkslyaipgldyvahedilpyscsheqplhHELFDKFlvhmpdkdppfvaQQTLRTwqrknhpwlelsdvhketteNVRVTVIPfymgcrdsptssvYWWRYCIRLENLGELTVQLRERHWRIFSLsgtletvrgrgvvgqepvlskslpafqysshvslqapsghm
Flexible Loop (DISEMBL)
laeigkldtpkvqgkystgqlflhRVFGYRGIVLFPWLARVYdrdipnkrdkpsdvngsvgkevkskthtFYQVLIDSRDCPYIRAQTEAVTflgnqnsnKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNhpwlelsdvhketteNVRVTVIpfymgcrdspTSSVYWWRYCIRLENLGELTVQLRERHWRIFslsgtletvrgrgVVGQEPVLskslpafqysshvslqapsghm
Low Complexity Region (SEG)
LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM
Disordered region (IsUnstruct)
**************KYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI*********************THTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVL**********************
Disordered Region (DISOPRED)
*AEIGK*DTP*****YSTGQLFLHRVFGYRGIVLFPWLARVY****************************FYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQ*T**TW***************ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSG**
Disordered Region (DISEMBL)
LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM
Disordered Region (DISPRO)
LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPN************GKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q91VA6	368	Polymerase delta-interact	yes	N/A	0.988	0.714	0.702	1e-110
Q9Y2S7	368	Polymerase delta-interact	yes	N/A	0.988	0.714	0.698	1e-110
B6IPQ9	130	Protein ApaG OS=Rhodospir	yes	N/A	0.364	0.746	0.438	6e-16
A8ILE7	130	Protein ApaG OS=Azorhizob	yes	N/A	0.364	0.746	0.418	5e-15
Q2VZE7	130	Protein ApaG OS=Magnetosp	yes	N/A	0.364	0.746	0.418	9e-15
B8ELJ0	130	Protein ApaG OS=Methyloce	yes	N/A	0.364	0.746	0.377	2e-14
B3QCE1	130	Protein ApaG OS=Rhodopseu	yes	N/A	0.364	0.746	0.428	3e-14
Q6N0J2	130	Protein ApaG OS=Rhodopseu	yes	N/A	0.364	0.746	0.428	3e-14
B0UC46	130	Protein ApaG OS=Methyloba	yes	N/A	0.364	0.746	0.418	4e-14
A7ICI5	130	Protein ApaG OS=Xanthobac	yes	N/A	0.364	0.746	0.397	9e-14

>sp|Q91VA6|PDIP2_MOUSE Polymerase delta-interacting protein 2 OS=Mus musculus GN=Poldip2 PE=2 SV=1

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/272 (70%), Positives = 222/272 (81%), Gaps = 9/272 (3%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
           L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASATPEKAENPA-- 119

Query: 57  NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
            G   KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct: 120 -GHGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query: 115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
           EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct: 179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query: 175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
           EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct: 239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query: 235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct: 299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

Mus musculus (taxid: 10090)

>sp|Q9Y2S7|PDIP2_HUMAN Polymerase delta-interacting protein 2 OS=Homo sapiens GN=POLDIP2 PE=1 SV=1

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/272 (69%), Positives = 222/272 (81%), Gaps = 9/272 (3%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
           L  +G  + PK  GKY TGQLFLH +FGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPA-- 119

Query: 57  NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
            G   KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct: 120 -GHGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query: 115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
           EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct: 179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query: 175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
           EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct: 239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query: 235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct: 299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

Homo sapiens (taxid: 9606)

>sp|B6IPQ9|APAG_RHOCS Protein ApaG OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=apaG PE=3 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           ++ E T ++RVTV P Y+  +  P    + W Y +R+EN G  TVQLR RHW++    G 
Sbjct: 1   MYSEVTRSIRVTVRPEYLAQQSQPEERRFVWAYHVRIENEGLETVQLRTRHWQVTDAQGR 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           ++ VRG GVVG++PVL +   AF+Y+S   L  PSG M
Sbjct: 61  VQEVRGPGVVGEQPVL-RPGEAFEYTSGTPLPTPSGFM 97

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|A8ILE7|APAG_AZOC5 Protein ApaG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=apaG PE=3 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           +++ TT  ++VT  P Y+  R  P    ++W Y I + NLG+++VQL+ RHW I    G 
Sbjct: 1   MYRATTRKIQVTATPRYVAERSEPDQGRHFWAYTIEVVNLGKVSVQLKSRHWVITDAHGH 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           +E V G GVVG+EPVL      F+Y+S V L  P+G M
Sbjct: 61  VEEVHGAGVVGEEPVLPPG-GRFEYTSGVPLSTPTGIM 97

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|Q2VZE7|APAG_MAGSA Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           ++ +TT ++ VTV PFY+  + SP  + + W Y +R+ N G  TVQL  RHW I    G 
Sbjct: 1   MYSQTTRDIEVTVKPFYLDDQSSPGDNHFVWAYRVRIVNKGSRTVQLLRRHWVITDAIGR 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           ++ V+G GVVG++PVL +   A++Y+S   L  PSG M
Sbjct: 61  VQEVKGPGVVGEQPVL-RPGDAYEYTSGTPLPTPSGIM 97

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|B8ELJ0|APAG_METSB Protein ApaG OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=apaG PE=3 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           ++   T+++++TV+P ++  R +   ++++W Y + + N  E TVQL  RHW+I   +G 
Sbjct: 1   MYSAVTQDIQITVLPEFIPERSNADQAMFFWAYTVEIANQSEKTVQLTARHWKITDGNGR 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           LE V+G GVVG++P+L K    F+Y+S  +L  PSG M
Sbjct: 61  LEEVQGPGVVGEQPIL-KPGETFRYTSGSNLTTPSGIM 97

Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) (taxid: 395965)

>sp|B3QCE1|APAG_RHOPT Protein ApaG OS=Rhodopseudomonas palustris (strain TIE-1) GN=apaG PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           +++  T  + VTV P Y+  R S  +  Y+W Y + + N GE TV+LR RHW I   SG 
Sbjct: 1   MYRAVTRRIEVTVEPNYLPERSSAENRQYFWSYTVVITNSGEETVKLRTRHWVITDASGR 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            + VRG GVVG++PVL+     F+Y+S V L   SG M
Sbjct: 61  TQEVRGEGVVGEQPVLAPG-ERFEYTSGVPLPTASGFM 97

Rhodopseudomonas palustris (strain TIE-1) (taxid: 395960)

>sp|Q6N0J2|APAG_RHOPA Protein ApaG OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=apaG PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           +++  T  + VTV P Y+  R S  +  Y+W Y + + N GE TV+LR RHW I   SG 
Sbjct: 1   MYRAVTRRIEVTVEPNYLPERSSAENRQYFWSYTVVITNSGEETVKLRTRHWVITDASGR 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            + VRG GVVG++PVL+     F+Y+S V L   SG M
Sbjct: 61  TQEVRGEGVVGEQPVLAPG-ERFEYTSGVPLPTASGFM 97

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594)

>sp|B0UC46|APAG_METS4 Protein ApaG OS=Methylobacterium sp. (strain 4-46) GN=apaG PE=3 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           ++K  T  + VTV P ++    SP  S Y++ Y + + N G   VQLR RHWRI    G 
Sbjct: 1   MYKAETRGISVTVTPRFVEEESSPDESRYFFAYTVEITNNGRDKVQLRSRHWRIVDGRGA 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           L+ VRG GVVG++PVL     +F Y+S   L  P+G M
Sbjct: 61  LQEVRGAGVVGKQPVLGPG-ESFSYTSGCPLPTPNGTM 97

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|A7ICI5|APAG_XANP2 Protein ApaG OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=apaG PE=3 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           +++  T N++VT  P Y+  R  P    ++W Y + + NLG+ TVQL+ RHW I   +G 
Sbjct: 1   MYRAITRNIQVTATPRYVAERSEPDQGRHFWAYTVEVANLGQETVQLKGRHWVITDANGH 60

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            E V G GVVG+EP L      F+Y+S V L   +G M
Sbjct: 61  TEEVHGAGVVGEEPTLPPG-GRFEYTSGVPLNTSTGIM 97

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
242018884	319	Polymerase delta-interacting protein, pu	0.996	0.830	0.837	1e-134
158302458	402	AGAP001153-PA [Anopheles gambiae str. PE	1.0	0.661	0.798	1e-131
332021294	335	Polymerase delta-interacting protein 2 [	1.0	0.794	0.824	1e-131
322795047	337	hypothetical protein SINV_05129 [Solenop	1.0	0.789	0.813	1e-129
307173485	333	Polymerase delta-interacting protein 2 [	0.996	0.795	0.812	1e-129
91085387	332	PREDICTED: similar to AGAP001153-PA [Tri	1.0	0.801	0.808	1e-129
332373530	332	unknown [Dendroctonus ponderosae]	1.0	0.801	0.804	1e-129
170055415	381	polymerase delta-interacting protein 2 [	1.0	0.698	0.785	1e-129
346473011	339	hypothetical protein [Amblyomma maculatu	1.0	0.784	0.793	1e-128
157128429	392	hypothetical protein AaeL_AAEL011113 [Ae	1.0	0.678	0.788	1e-128

>gi|242018884|ref|XP_002429899.1| Polymerase delta-interacting protein, putative [Pediculus humanus corporis] gi|212514937|gb|EEB17161.1| Polymerase delta-interacting protein, putative [Pediculus humanus corporis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/270 (83%), Positives = 251/270 (92%), Gaps = 5/270 (1%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSV 60
           LAE+GKL+TPK  GKY TGQLFLHRVFGYRG++LFPWLA+VYDRD+PNKR+  S+V+G+V
Sbjct: 14  LAEVGKLETPKAAGKYDTGQLFLHRVFGYRGVILFPWLAKVYDRDVPNKREV-SNVDGNV 72

Query: 61  G----KEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHED 116
           G    KEVK +THTFYQVLIDSRDCPYIRAQ EAVTFLGNQ +++SLYAIPGLDYVAHED
Sbjct: 73  GMNVGKEVKGRTHTFYQVLIDSRDCPYIRAQAEAVTFLGNQENSRSLYAIPGLDYVAHED 132

Query: 117 ILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTEN 176
           +LPY+ + +QPLHHELFDKFL++ PDKDPPF AQ+TLR WQ+KNHPWLELSDVHKETTEN
Sbjct: 133 VLPYTTAEKQPLHHELFDKFLLYYPDKDPPFGAQETLRAWQKKNHPWLELSDVHKETTEN 192

Query: 177 VRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRG 236
           VRVTVIPFYMGCR+S T+SVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRG
Sbjct: 193 VRVTVIPFYMGCRESQTTSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRG 252

Query: 237 VVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           V GQEPVLSK+LPAFQYSSHVSLQAPSGHM
Sbjct: 253 VAGQEPVLSKTLPAFQYSSHVSLQAPSGHM 282

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158302458|ref|XP_322007.4| AGAP001153-PA [Anopheles gambiae str. PEST] gi|157012962|gb|EAA01033.5| AGAP001153-PA [Anopheles gambiae str. PEST]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/278 (79%), Positives = 242/278 (87%), Gaps = 12/278 (4%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNK------RDKPS 54
           LAE+G+L+ PK QGKY TGQLFLHRVFGYRG++LFPWLARVYDRD+PN+          S
Sbjct: 40  LAEVGRLELPKAQGKYETGQLFLHRVFGYRGVILFPWLARVYDRDLPNQAKGNQLEGASS 99

Query: 55  DVN------GSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPG 108
           D N      G+ GKEV+ KTHTFYQVLID RDCPYIRAQTEAVTFLGNQ S++SLYAIPG
Sbjct: 100 DANDSGSGDGNTGKEVQKKTHTFYQVLIDQRDCPYIRAQTEAVTFLGNQESSRSLYAIPG 159

Query: 109 LDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSD 168
           LDYVAHEDILPYS   + PL HELFDKFL H PDKDPPFVAQ+TLR WQ+KNHPWLELSD
Sbjct: 160 LDYVAHEDILPYSSGEQHPLQHELFDKFLAHQPDKDPPFVAQETLRAWQKKNHPWLELSD 219

Query: 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGT 228
           VHKETTE +RVTVIPFYMGCR++P +SVYWWRYCIRLENLGEL+VQLRERHWRIFSLSGT
Sbjct: 220 VHKETTEGIRVTVIPFYMGCRETPAASVYWWRYCIRLENLGELSVQLRERHWRIFSLSGT 279

Query: 229 LETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           LETVRGRGVVGQEP+LS  LPAFQYSSHVSLQAPSGHM
Sbjct: 280 LETVRGRGVVGQEPILSPRLPAFQYSSHVSLQAPSGHM 317

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021294|gb|EGI61673.1| Polymerase delta-interacting protein 2 [Acromyrmex echinatior]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/268 (82%), Positives = 247/268 (92%), Gaps = 2/268 (0%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVN-GS 59
           LAE+GKL+TPK+QGKY TGQL LHRVFGYRG++LFPWLARVYDRDI NK+D+  + N  S
Sbjct: 32  LAEVGKLETPKLQGKYETGQLILHRVFGYRGVILFPWLARVYDRDISNKKDEKDNSNFNS 91

Query: 60  VG-KEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDIL 118
           VG KEVK +THTFYQVLID RDCPYIRAQTEAVTFLGN  S++SLYAIPGLDYVAHED+L
Sbjct: 92  VGEKEVKGRTHTFYQVLIDQRDCPYIRAQTEAVTFLGNHESSRSLYAIPGLDYVAHEDVL 151

Query: 119 PYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVR 178
           PY+ + +  L HELFDKFL++ PDK+P FVAQ+TLRTWQ+KNHPWLELSDVHKETTEN+R
Sbjct: 152 PYTTNEKAALQHELFDKFLIYHPDKEPCFVAQETLRTWQKKNHPWLELSDVHKETTENIR 211

Query: 179 VTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVV 238
           +TVIPFYMGCR+S T+SVYWWRYCIRLENLGEL+VQLRERHWRIFSLSGTLETVRGRGVV
Sbjct: 212 ITVIPFYMGCRESQTTSVYWWRYCIRLENLGELSVQLRERHWRIFSLSGTLETVRGRGVV 271

Query: 239 GQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GQEPVLSK+LPAFQYSSHVSLQAPSGHM
Sbjct: 272 GQEPVLSKALPAFQYSSHVSLQAPSGHM 299

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795047|gb|EFZ17895.1| hypothetical protein SINV_05129 [Solenopsis invicta]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/268 (81%), Positives = 243/268 (90%), Gaps = 2/268 (0%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKP--SDVNG 58
           LAE+GKL+TPK+QGKY TGQL LHRVFGYRG++LFPWLARVYDRDI NK+D+   S+ N 
Sbjct: 34  LAEVGKLETPKLQGKYDTGQLILHRVFGYRGVILFPWLARVYDRDISNKKDEKDNSNFNS 93

Query: 59  SVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDIL 118
              KEVK +THTFYQVLID RDCPYIRAQTEAVTFLGN  S++SLYAIPGLDYVAHED+L
Sbjct: 94  VSEKEVKGRTHTFYQVLIDQRDCPYIRAQTEAVTFLGNHESSRSLYAIPGLDYVAHEDVL 153

Query: 119 PYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVR 178
           PY+ + +  L HELFDKFL +  DK+P FVAQ+TLRTWQ+KNHPWLELSDVHKETTEN+R
Sbjct: 154 PYTTNEKAALQHELFDKFLTYHSDKEPCFVAQETLRTWQKKNHPWLELSDVHKETTENIR 213

Query: 179 VTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVV 238
           +TVIPFYMGCR+S T+SVYWWRYCIRLENLGEL+VQLRERHWRIFSLSGTLETVRGRGVV
Sbjct: 214 ITVIPFYMGCRESQTTSVYWWRYCIRLENLGELSVQLRERHWRIFSLSGTLETVRGRGVV 273

Query: 239 GQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GQEPVLSK+LPAFQYSSHVSLQAPSGHM
Sbjct: 274 GQEPVLSKALPAFQYSSHVSLQAPSGHM 301

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173485|gb|EFN64395.1| Polymerase delta-interacting protein 2 [Camponotus floridanus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/266 (81%), Positives = 241/266 (90%), Gaps = 1/266 (0%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSV 60
           LAE+GKL+TPK+QGKY  GQL LHRVFGYRG++LFPWLARVYDRDI NK+D+ ++ N   
Sbjct: 32  LAEVGKLETPKLQGKYEAGQLILHRVFGYRGVILFPWLARVYDRDISNKKDEKNNTNND- 90

Query: 61  GKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPY 120
            KEVK +THTFYQVLID RDCPYIRAQTEAVTFLGN  S++SLYAIPGLDYVAHED+LPY
Sbjct: 91  DKEVKGRTHTFYQVLIDQRDCPYIRAQTEAVTFLGNHESSRSLYAIPGLDYVAHEDVLPY 150

Query: 121 SCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVT 180
           + + +  L HELFDKFL + P K+P FVAQ+TLR WQ+KNHPWLELSDVHKETTENVR+T
Sbjct: 151 TTNEKAALQHELFDKFLNYHPGKEPCFVAQETLRAWQKKNHPWLELSDVHKETTENVRIT 210

Query: 181 VIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQ 240
           VIPFYMGCR+S T+SVYWWRYCIRLENLGEL+VQLRERHWRIFSLSGTLETVRGRGVVGQ
Sbjct: 211 VIPFYMGCRESQTTSVYWWRYCIRLENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQ 270

Query: 241 EPVLSKSLPAFQYSSHVSLQAPSGHM 266
           EPVLSK+LPAFQYSSHVSLQAPSGHM
Sbjct: 271 EPVLSKALPAFQYSSHVSLQAPSGHM 296

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085387|ref|XP_966471.1| PREDICTED: similar to AGAP001153-PA [Tribolium castaneum] gi|270008409|gb|EFA04857.1| hypothetical protein TcasGA2_TC014911 [Tribolium castaneum]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/266 (80%), Positives = 240/266 (90%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSV 60
           LAE+G+LD PK+ GKY TGQL LHRVFGYRG+VLFPWLARVYDRD+P  R    + N  V
Sbjct: 29  LAEVGRLDAPKITGKYETGQLILHRVFGYRGVVLFPWLARVYDRDLPQHRSGDVEPNPGV 88

Query: 61  GKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPY 120
           GKEV+ +THTFYQVLID RDCPYIRAQTEAVTFLGNQ+S++SLYAIPGLDYVAHEDI+PY
Sbjct: 89  GKEVRGRTHTFYQVLIDQRDCPYIRAQTEAVTFLGNQDSSRSLYAIPGLDYVAHEDIIPY 148

Query: 121 SCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVT 180
           + + + PLHHELFDKFL + PDKDPPFVAQ+TLR WQ KNHPWLELSDVHKETTEN+RVT
Sbjct: 149 TSAEKSPLHHELFDKFLAYDPDKDPPFVAQETLRAWQNKNHPWLELSDVHKETTENIRVT 208

Query: 181 VIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQ 240
           VIPFYMG R+S ++SVYWWRYCIRLENLG L+VQLRERHWRIFSLSGTLETVRGRGVVGQ
Sbjct: 209 VIPFYMGFRESHSTSVYWWRYCIRLENLGSLSVQLRERHWRIFSLSGTLETVRGRGVVGQ 268

Query: 241 EPVLSKSLPAFQYSSHVSLQAPSGHM 266
           EP L+++LPAFQYSSHVSLQAPSGHM
Sbjct: 269 EPALTRTLPAFQYSSHVSLQAPSGHM 294

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373530|gb|AEE61906.1| unknown [Dendroctonus ponderosae]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/266 (80%), Positives = 238/266 (89%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSV 60
           LAE+G+L+TPK +GKY TGQL LHRVFGYRG+VLFPWLARVYDRD+P  R+   + N  V
Sbjct: 29  LAEVGRLETPKAEGKYDTGQLILHRVFGYRGVVLFPWLARVYDRDLPQHREGDEETNAGV 88

Query: 61  GKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPY 120
           GKEV+ +THTFYQVLID RDCPYIRAQTEAVTFLGNQ+S++SLYAIPGLDYVAHEDI PY
Sbjct: 89  GKEVRGRTHTFYQVLIDQRDCPYIRAQTEAVTFLGNQDSSRSLYAIPGLDYVAHEDIFPY 148

Query: 121 SCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVT 180
             + + PLHHELFDKFL   P++DPPFVAQ TL+ WQ KNHPWLELSDVHKETTEN+RVT
Sbjct: 149 VSAEKAPLHHELFDKFLGPNPNRDPPFVAQDTLKAWQNKNHPWLELSDVHKETTENIRVT 208

Query: 181 VIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQ 240
           VIPFYMGC++S  SSVYWWRYCIRLENLG L+VQLRERHWRIFSLSGTLETVRGRGVVGQ
Sbjct: 209 VIPFYMGCKESHASSVYWWRYCIRLENLGSLSVQLRERHWRIFSLSGTLETVRGRGVVGQ 268

Query: 241 EPVLSKSLPAFQYSSHVSLQAPSGHM 266
           EP L+K+LPAFQYSSHVSLQAPSGHM
Sbjct: 269 EPALTKTLPAFQYSSHVSLQAPSGHM 294

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055415|ref|XP_001863572.1| polymerase delta-interacting protein 2 [Culex quinquefasciatus] gi|167875395|gb|EDS38778.1| polymerase delta-interacting protein 2 [Culex quinquefasciatus]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/280 (78%), Positives = 239/280 (85%), Gaps = 14/280 (5%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDK-------- 52
           LAE+GKL+ PK QG Y TGQLFLHRVFGYRG++LFPWLARVYDRD+P +           
Sbjct: 36  LAEVGKLELPKAQGTYETGQLFLHRVFGYRGVILFPWLARVYDRDLPAQSKNGQQAEAIT 95

Query: 53  --PSDVNG----SVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAI 106
             P+  +G    + GKEV+ KTHTFYQVLID RDCPYIRAQTEAVTFLGNQ S++SLYAI
Sbjct: 96  AAPAPPSGETPPNAGKEVQKKTHTFYQVLIDQRDCPYIRAQTEAVTFLGNQESSRSLYAI 155

Query: 107 PGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLEL 166
           PGLDYVAHEDILPYS   + PL HELFDKFL H PDKDPPFVAQ TLR WQ+KNHPWLEL
Sbjct: 156 PGLDYVAHEDILPYSSGEQHPLQHELFDKFLAHQPDKDPPFVAQDTLRAWQKKNHPWLEL 215

Query: 167 SDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLS 226
           SDVHKETTE +RVTVIPFYMGCR++P +SVYWWRYCIRLENLGEL+VQLRERHWRIFSLS
Sbjct: 216 SDVHKETTEGIRVTVIPFYMGCRETPAASVYWWRYCIRLENLGELSVQLRERHWRIFSLS 275

Query: 227 GTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GTLETVRGRGVVGQEPVLS  LPAFQYSSHVSLQAPSGHM
Sbjct: 276 GTLETVRGRGVVGQEPVLSPRLPAFQYSSHVSLQAPSGHM 315

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346473011|gb|AEO36350.1| hypothetical protein [Amblyomma maculatum]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/271 (79%), Positives = 243/271 (89%), Gaps = 5/271 (1%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDK-----PSD 55
           LAE+G+L+TPK++GKY TGQLFLHR+FGYRGI LFPW+ARVYDRD+P+K++       SD
Sbjct: 33  LAEVGRLETPKLEGKYDTGQLFLHRIFGYRGITLFPWMARVYDRDVPSKKNAEGSEDSSD 92

Query: 56  VNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHE 115
               VG+EVK KTHT+YQVLIDSRDCPY+R QTEAVTFLGNQ++++SLYAIPGLDYVAHE
Sbjct: 93  GFNHVGREVKGKTHTYYQVLIDSRDCPYVRTQTEAVTFLGNQDNSRSLYAIPGLDYVAHE 152

Query: 116 DILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTE 175
           DILPY+ + +QPLHHELFDKFLV  PDKDPPF A+ TLR WQ KNHPWLELSDVH+ETTE
Sbjct: 153 DILPYTSTEKQPLHHELFDKFLVCEPDKDPPFAAKDTLRAWQEKNHPWLELSDVHRETTE 212

Query: 176 NVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGR 235
            VRVTVIPFYMGCR + +S+VYWWRYCIRLENLG+L VQLRERHWRIFSLSGTLETVRGR
Sbjct: 213 GVRVTVIPFYMGCRVAQSSTVYWWRYCIRLENLGDLAVQLRERHWRIFSLSGTLETVRGR 272

Query: 236 GVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GVVGQEP+LSKS PAFQYSSHVSLQAPSGHM
Sbjct: 273 GVVGQEPILSKSQPAFQYSSHVSLQAPSGHM 303

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128429|ref|XP_001655117.1| hypothetical protein AaeL_AAEL011113 [Aedes aegypti] gi|108872606|gb|EAT36831.1| AAEL011113-PA [Aedes aegypti]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/279 (78%), Positives = 238/279 (85%), Gaps = 13/279 (4%)

Query: 1   LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIP--NKRDKPSDVNG 58
           LAE+GKL+ PK QGKY TGQLFLHRVFGYRG++LFPWLARVYDRD+P  NK  +    +G
Sbjct: 35  LAEVGKLELPKAQGKYETGQLFLHRVFGYRGVILFPWLARVYDRDLPAQNKSIQNETASG 94

Query: 59  -----------SVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIP 107
                      +  KEV+ KTHTFYQVLID RDCPYIRAQTEAVTFLGNQ S++SLYAIP
Sbjct: 95  PATGDSSSTPPNTNKEVQKKTHTFYQVLIDQRDCPYIRAQTEAVTFLGNQESSRSLYAIP 154

Query: 108 GLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELS 167
           GLDYVAHEDILPYS   + PL HELFDKFL H PDKDPPF AQ TLR WQ+KNHPWLELS
Sbjct: 155 GLDYVAHEDILPYSSGEQHPLQHELFDKFLAHQPDKDPPFSAQDTLRAWQKKNHPWLELS 214

Query: 168 DVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSG 227
           DVHKETTE +RVTVIPFYMGCR++P +SVYWWRYCIRLENLGEL+VQLRERHWRIFSLSG
Sbjct: 215 DVHKETTEGIRVTVIPFYMGCRETPAASVYWWRYCIRLENLGELSVQLRERHWRIFSLSG 274

Query: 228 TLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           TLETVRGRGVVGQEPVLS  LPAFQYSSHVSLQAPSGHM
Sbjct: 275 TLETVRGRGVVGQEPVLSPRLPAFQYSSHVSLQAPSGHM 313

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
FB|FBgn0037329	431	CG12162 [Drosophila melanogast	0.770	0.475	0.853	1.4e-114
ZFIN|ZDB-GENE-040212-1	766	smtnl "smoothelin, like" [Dani	1.0	0.347	0.706	1.2e-104
ZFIN|ZDB-GENE-030131-5881	376	poldip2 "polymerase (DNA-direc	1.0	0.707	0.706	1.6e-104
UNIPROTKB|I3LMX3	370	POLDIP2 "Uncharacterized prote	0.988	0.710	0.709	3.2e-104
UNIPROTKB|A5D9H9	368	POLDIP2 "Polymerase (DNA-direc	0.988	0.714	0.705	6.7e-104
UNIPROTKB|E2QVV7	368	POLDIP2 "Uncharacterized prote	0.988	0.714	0.705	6.7e-104
MGI|MGI:1915061	368	Poldip2 "polymerase (DNA-direc	0.988	0.714	0.705	6.7e-104
UNIPROTKB|Q9Y2S7	368	POLDIP2 "Polymerase delta-inte	0.988	0.714	0.702	8.6e-104
UNIPROTKB|F1NNL9	349	TSR1 "Uncharacterized protein"	1.0	0.762	0.710	1.1e-103
RGD|1307022	367	Poldip2 "polymerase (DNA-direc	0.988	0.716	0.702	2.3e-103

FB|FBgn0037329 CG12162 [Drosophila melanogaster (taxid:7227)]

 Score = 974 (347.9 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
 Identities = 175/205 (85%), Positives = 188/205 (91%)

Query:    62 KEVKSKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYS 121
             KEVK K  TFYQVLID+RDCPYIRAQTEAVTFLGNQ+SN+SLYAIPGLDYVAHEDI+PYS
Sbjct:   178 KEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYAIPGLDYVAHEDIMPYS 237

Query:   122 CSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENVRVTV 181
              S + PL HELFDKFL H PD DPPFV Q TL+ WQ KNHPWL++SDVHKETTENVR+TV
Sbjct:   238 SSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKAWQEKNHPWLDMSDVHKETTENVRITV 297

Query:   182 IPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQE 241
             IPFYMGCR++P SSVYWWRYCIRLENLGEL+VQLRERHWRIFSLSGTLETVRGRGVVGQE
Sbjct:   298 IPFYMGCRETPASSVYWWRYCIRLENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQE 357

Query:   242 PVLSKSLPAFQYSSHVSLQAPSGHM 266
             P+LS  LPAFQYSSHVSLQAPSGHM
Sbjct:   358 PILSPRLPAFQYSSHVSLQAPSGHM 382

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-040212-1 smtnl "smoothelin, like" [Danio rerio (taxid:7955)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 190/269 (70%), Positives = 219/269 (81%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI-PNKRDKPSDVNGS 59
             L  +G  +  K  GKY TGQLFLH VFGYRGIVLFPW AR+YDRD+ P   D   D  G 
Sbjct:   460 LEAVGVFEALKQHGKYETGQLFLHSVFGYRGIVLFPWHARLYDRDVSPATTDSKPDSTGH 519

Query:    60 VGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDI 117
               KEVK K HT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+HEDI
Sbjct:   520 GSKEVKGKMHTYYQVLIDTRDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDI 579

Query:   118 LPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENV 177
             LPY+ + + P+ HELF++FL+  P ++PPF A+ TLR WQ KNHPWLELSDVH+ETTEN+
Sbjct:   580 LPYNSTEQVPIQHELFERFLMFNPSRNPPFTARDTLRAWQEKNHPWLELSDVHRETTENI 639

Query:   178 RVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGV 237
             RVTVIPFYMG R++  S VYWWRYCIRLENLG   VQLRERHWRIFSLSGTLETVRGRGV
Sbjct:   640 RVTVIPFYMGMREAQNSHVYWWRYCIRLENLGNEVVQLRERHWRIFSLSGTLETVRGRGV 699

Query:   238 VGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             VG+EPVLS+  PAFQYSSHVSLQAPSGHM
Sbjct:   700 VGKEPVLSREQPAFQYSSHVSLQAPSGHM 728

GO:0003677 "DNA binding" evidence=IEA

GO:0003779 "actin binding" evidence=IDA

GO:0043009 "chordate embryonic development" evidence=IMP

ZFIN|ZDB-GENE-030131-5881 poldip2 "polymerase (DNA-directed), delta interacting protein 2" [Danio rerio (taxid:7955)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 190/269 (70%), Positives = 218/269 (81%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI-PNKRDKPSDVNGS 59
             L  +G  +  K  GKY TGQLFLH VFGYRGIVLFPW AR+YDRD+ P   D   D  G 
Sbjct:    70 LEAVGVFEALKQHGKYETGQLFLHSVFGYRGIVLFPWHARLYDRDVSPATTDSKPDSTGH 129

Query:    60 VGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDI 117
               KEVK K HT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+HEDI
Sbjct:   130 GSKEVKGKMHTYYQVLIDTRDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDI 189

Query:   118 LPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENV 177
             LPY+ + + P+ HELF++FL+  P + PPF A+ TLR WQ KNHPWLELSDVH+ETTEN+
Sbjct:   190 LPYNSTEQVPIQHELFERFLMFNPSRSPPFTARDTLRAWQEKNHPWLELSDVHRETTENI 249

Query:   178 RVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGV 237
             RVTVIPFYMG R++  S VYWWRYCIRLENLG   VQLRERHWRIFSLSGTLETVRGRGV
Sbjct:   250 RVTVIPFYMGMREAQNSHVYWWRYCIRLENLGNEVVQLRERHWRIFSLSGTLETVRGRGV 309

Query:   238 VGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             VG+EPVLS+  PAFQYSSHVSLQAPSGHM
Sbjct:   310 VGKEPVLSREQPAFQYSSHVSLQAPSGHM 338

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|I3LMX3 POLDIP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 193/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    64 LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG- 122

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   123 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 180

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPYS + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   181 EDILPYSSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 240

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   241 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 300

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   301 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 332

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|A5D9H9 POLDIP2 "Polymerase (DNA-directed), delta interacting protein 2" [Bos taurus (taxid:9913)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 192/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    62 LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG- 120

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   121 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2QVV7 POLDIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 192/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    62 LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG- 120

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   121 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:1915061 Poldip2 "polymerase (DNA-directed), delta interacting protein 2" [Mus musculus (taxid:10090)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 192/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    62 LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASATPEKAENPAG- 120

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   121 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=ISA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

UNIPROTKB|Q9Y2S7 POLDIP2 "Polymerase delta-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 191/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH +FGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    62 LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG- 120

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   121 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 178

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   179 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 238

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             EN+RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   239 ENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 298

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   299 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 330

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

UNIPROTKB|F1NNL9 TSR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 191/269 (71%), Positives = 220/269 (81%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNK-RDKPSDVNGS 59
             L  +G  + PK  GKY TGQLFLH VFGYRGIVLFPW AR+YDRD+ +   +K  +V G 
Sbjct:    43 LETVGVFEAPKQHGKYETGQLFLHSVFGYRGIVLFPWQARLYDRDVASPVTEKSENVAGH 102

Query:    60 VGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDI 117
               KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+HEDI
Sbjct:   103 GSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDI 162

Query:   118 LPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETTENV 177
             LPYS + + P+ HELF++FL++   K PPFVA+ TL  WQ KNHPWLELSDVH+ETTEN+
Sbjct:   163 LPYSSTDQVPIQHELFERFLMYDQTKVPPFVARDTLCAWQEKNHPWLELSDVHRETTENI 222

Query:   178 RVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGV 237
             RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRGRGV
Sbjct:   223 RVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSEVVQLRERHWRIFSLSGTLETVRGRGV 282

Query:   238 VGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             VG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   283 VGREPVLSKEQPAFQYSSHVSLQASSGHM 311

GO:0003677 "DNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

RGD|1307022 Poldip2 "polymerase (DNA-directed), delta interacting protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 191/272 (70%), Positives = 224/272 (82%)

Query:     1 LAEIGKLDTPKVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDI----PNKRDKPSDV 56
             L  +G  + PK  GKY TGQLFLH VFGYRG+VLFPW AR+YDRD+    P K + P+  
Sbjct:    61 LETVGVFEVPKQNGKYETGQLFLHSVFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG- 119

Query:    57 NGSVGKEVKSKTHTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSLYAIPGLDYVAH 114
             +GS  KEVK KTHT+YQVLID+RDCP+I  R+QTEAVTFL N + +++LYAIPGLDYV+H
Sbjct:   120 HGS--KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSH 177

Query:   115 EDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWLELSDVHKETT 174
             EDILPY+ + + P+ HELF++FL++   K PPFVA++TLR WQ KNHPWLELSDVH+ETT
Sbjct:   178 EDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETT 237

Query:   175 ENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG 234
             E++RVTVIPFYMG R++  S VYWWRYCIRLENL    VQLRERHWRIFSLSGTLETVRG
Sbjct:   238 ESIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRG 297

Query:   235 RGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
             RGVVG+EPVLSK  PAFQYSSHVSLQA SGHM
Sbjct:   298 RGVVGREPVLSKEQPAFQYSSHVSLQASSGHM 329

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y2S7	PDIP2_HUMAN	No assigned EC number	0.6985	0.9887	0.7146	yes	N/A
Q91VA6	PDIP2_MOUSE	No assigned EC number	0.7022	0.9887	0.7146	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	266
pfam04379	90	pfam04379, DUF525, Protein of unknown function (DU	5e-27
PRK05461	127	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Rev	2e-25
COG2967	126	COG2967, ApaG, Uncharacterized protein affecting M	8e-20
smart00992	98	smart00992, YccV-like, Hemimethylated DNA-binding	3e-12
pfam08755	100	pfam08755, YccV-like, Hemimethylated DNA-binding p	4e-07
TIGR02097	101	TIGR02097, yccV, hemimethylated DNA binding domain	0.003

>gnl|CDD|202989 pfam04379, DUF525, Protein of unknown function (DUF525)

 Score = 99.9 bits (250), Expect = 5e-27
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 191 SPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLP- 249
           SP    Y + Y I +ENLG  TVQL  RHW I   +G +E VRG GVVG++P+L+   P 
Sbjct: 6   SPEEGRYVFAYTITIENLGPETVQLLSRHWIITDANGKVEEVRGEGVVGEQPLLA---PG 62

Query: 250 -AFQYSSHVSLQAPSGHM 266
            +F+Y+S   L+ PSG M
Sbjct: 63  ESFEYTSGTPLETPSGSM 80

Members of this family include the bacterial protein ApaG and the C termini of some F-box proteins (pfam00646). F-box proteins contain a carboxyl-terminal domain that interacts with protein substrates, so this family may be involved in protein-protein interaction. The function of ApaG proteins is unknown, but mutations in the Salmonella typhimurium ApaG homologue corD gives a phenotype of low-level cobalt resistance and decreased magnesium efflux by effects on the CorA magnesium transport system. Length = 90

>gnl|CDD|180098 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed

 Score = 96.8 bits (242), Expect = 2e-25
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
            T  + V+V P Y+  +  P    Y + Y I +ENLG + VQL  RHW I   +G ++ V
Sbjct: 5   VTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEV 64

Query: 233 RGRGVVGQEPVLSKSLP--AFQYSSHVSLQAPSGHM 266
           RG GVVG++PVL+   P  +F+Y+S   L+ PSG M
Sbjct: 65  RGEGVVGEQPVLA---PGESFEYTSGAVLETPSGTM 97

Length = 127

>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

 Score = 82.4 bits (204), Expect = 8e-20
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
           ++ ++ V V P Y+  + SP    Y + Y + + NLGE+ VQL  R+W I   +G +  V
Sbjct: 4   SSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEV 63

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            G GVVG++P+L      +QY+S   L  PSG M
Sbjct: 64  EGEGVVGEQPLL-APGEEYQYTSGCPLDTPSGTM 96

Length = 126

>gnl|CDD|214961 smart00992, YccV-like, Hemimethylated DNA-binding protein YccV like

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 38/127 (29%)

Query: 13  QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVK-SKTHTF 71
             K+  GQ+  H++FGYRG+V           D   +     +    + ++ +  +   F
Sbjct: 1   HAKFRIGQVVRHKLFGYRGVVF----------DWDPEFANTEEWYDEIPEDSRPPRDQPF 50

Query: 72  YQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSH--EQPLH 129
           Y VL+++ D  Y+                          YV+ +++ P +     + PL 
Sbjct: 51  YHVLVENDDSSYVA-------------------------YVSEQNLEPDTSGEPIDHPLL 85

Query: 130 HELFDKF 136
            ELFD+F
Sbjct: 86  DELFDEF 92

YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix. Length = 98

>gnl|CDD|220004 pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 35/134 (26%), Positives = 48/134 (35%), Gaps = 56/134 (41%)

Query: 15  KYSTGQLFLHRVFGYRGIVL-----F----PWLARVYDRDIPNKRDKPSDVNGSVGKEVK 65
           K+  GQ+  HR+FGYRG++      F     W   +   D    RD+P            
Sbjct: 3   KFRIGQVVRHRLFGYRGVIFDVDPEFAASEEWYEAIP-EDRRPARDQP------------ 49

Query: 66  SKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHE 125
                FY VL++  D  Y+                          YVA E++ P   S E
Sbjct: 50  -----FYHVLVEDDDSSYVA-------------------------YVAEENLEP-DASGE 78

Query: 126 QPLH---HELFDKF 136
              H    ELFD+F
Sbjct: 79  PIRHPDLGELFDRF 92

YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix. Length = 100

>gnl|CDD|131152 TIGR02097, yccV, hemimethylated DNA binding domain

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 33/93 (35%)

Query: 15 KYSTGQLFLHRVFGYRGIVL---------FPWLARVYDRDIPNKRDKPSDVNGSVGKEVK 65
          K+  GQ+  H++FGYRG+V+           WL      +I   RD+P            
Sbjct: 3  KFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWL-DAIPVEIRPLRDQP------------ 49

Query: 66 SKTHTFYQVLIDSRDCPYIRAQTEAVTFLGNQN 98
               FY VL +  +          V ++  QN
Sbjct: 50 -----FYHVLAEDDEGLPY------VAYVAEQN 71

This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG4408|consensus	386		100.0
PRK05461	127	apaG CO2+/MG2+ efflux protein ApaG; Reviewed	100.0
COG2967	126	ApaG Uncharacterized protein affecting Mg2+/Co2+ t	100.0
PF04379	90	DUF525: Protein of unknown function (DUF525); Inte	99.98
PRK14129	105	heat shock protein HspQ; Provisional	99.94
COG3785	116	Uncharacterized conserved protein [Function unknow	99.93
TIGR02097	101	yccV hemimethylated DNA binding domain. This model	99.92
PF08755	100	YccV-like: Hemimethylated DNA-binding protein YccV	99.91
PF14263	124	DUF4354: Domain of unknown function (DUF4354); PDB	86.35

>KOG4408|consensus

Probab=100.00  E-value=1.3e-73  Score=528.36  Aligned_cols=255  Identities=65%  Similarity=1.059  Sum_probs=235.0

Q ss_pred             CCCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCC----------CCCcCCC-------------CCccccCCC
Q psy3671          12 VQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDK----------PSDVNGS-------------VGKEVKSKT   68 (266)
Q Consensus        12 ~~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~----------~~~~~~~-------------~~~~~~~~~   68 (266)
                      ...||+.||.|+|+.|||||||+|||+|+++|+|..++..+          +-....+             ..++++|++
T Consensus        63 ~~~~~etgqsF~h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~  142 (386)
T KOG4408|consen   63 KTQKYETGQSFLHDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQT  142 (386)
T ss_pred             cCCcccccceeeeeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeE
Confidence            36789999999999999999999999999999997763221          1110111             127789999


Q ss_pred             CceEEEEeeCCCcchh--ccccceeeeeccCCCCCcc-ceecCceecccCCcccCCCCCCCcccchhhhhh--hccCCCC
Q psy3671          69 HTFYQVLIDSRDCPYI--RAQTEAVTFLGNQNSNKSL-YAIPGLDYVAHEDILPYSCSHEQPLHHELFDKF--LVHMPDK  143 (266)
Q Consensus        69 q~fYqvLvD~rD~~~~--~~q~~~vt~l~~~~~~~~l-y~i~g~DyV~~~di~py~s~~~~pi~H~l~~~f--f~~~~~~  143 (266)
                      ++|||||+|.+||+|+  +.|+|+++++||.++...| |+|||||||+|+||+||++++..|++|+||++|  +..++.+
T Consensus       143 l~~yqvLi~~~d~sH~~~ev~~e~~t~~~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g~heLf~~~pdl~r~~~~  222 (386)
T KOG4408|consen  143 LTFYQVLIDMRDCSHIRSEVQTEAVTFLGNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPGQHELFDQFPDLARDPAA  222 (386)
T ss_pred             EeehheeeecccCccccchhhhhhhhhhcCcccccchheecccceeEeeccccccccccccccchhhhhhhhhhhcCccc
Confidence            9999999999999999  7999999999998776666 999999999999999999999999999999999  6677778


Q ss_pred             CCCccchhHHHHHHh-ccCCccccccceeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEE-CCcccEEEeeeeEE
Q psy3671         144 DPPFVAQQTLRTWQR-KNHPWLELSDVHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLEN-LGELTVQLRERHWR  221 (266)
Q Consensus       144 ~~~~v~~etL~~w~e-~~~~~l~~~~~~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN-~~~~~vQL~~RhW~  221 (266)
                      .++|+.+++|..|+| +|++||.+++++++||+||+|+|+|+|||++|....+.|||+|+||||| +...+|||.+|||+
T Consensus       223 ~~~f~~q~tl~~W~e~kn~gwl~~~dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRien~l~e~svQLreRhWr  302 (386)
T KOG4408|consen  223 IPPFVIQDTLTAWQESKNHGWLPIRDVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIENALPEKSVQLRERHWR  302 (386)
T ss_pred             CCchhhhHHHHHHHhcCCCCCcChhhCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEeecCCCCcceEEeEeeEE
Confidence            899999999999999 9999999999999999999999999999999999999999999999999 88999999999999


Q ss_pred             EEeCCCcEEEEecCCccCCCceeeCCCCceEEeeceEecCCceeC
Q psy3671         222 IFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM  266 (266)
Q Consensus       222 I~d~~G~~~~V~G~GVVG~~P~L~pge~~F~Y~S~~~l~t~~G~M  266 (266)
                      |++.+|.+++|+|+||||++|+|.||+|+|||+||++|+|++|+|
T Consensus       303 I~slng~le~V~G~gVVGk~PiLs~g~paFqYsSc~sl~ttsGhM  347 (386)
T KOG4408|consen  303 IFSLNGTLETVRGRGVVGKEPILSAGRPAFQYSSCVSLQTTSGHM  347 (386)
T ss_pred             EEecccchhhccccceeccccccCCCCcceEEeeeeeeccCCccc
Confidence            999999999999999999999999999999999999999999999

>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed

Probab=100.00  E-value=4.9e-38  Score=259.44  Aligned_cols=96  Identities=41%  Similarity=0.730  Sum_probs=94.4

Q ss_pred             eeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCC
Q psy3671         170 HKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLP  249 (266)
Q Consensus       170 ~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~  249 (266)
                      ++++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ 
T Consensus         2 ~~~~t~gI~V~V~~~y~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe-   80 (127)
T PRK05461          2 YSAVTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGE-   80 (127)
T ss_pred             cccccCCEEEEEEEEECcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCC-
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ceEEeeceEecCCceeC
Q psy3671         250 AFQYSSHVSLQAPSGHM  266 (266)
Q Consensus       250 ~F~Y~S~~~l~t~~G~M  266 (266)
                      +|+|+|+|.|+||.|+|
T Consensus        81 ~F~Y~S~~~l~tp~G~M   97 (127)
T PRK05461         81 SFEYTSGAVLETPSGTM   97 (127)
T ss_pred             CeEEeCCCCccCCCEEE
Confidence            99999999999999998

>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.5e-37  Score=248.13  Aligned_cols=95  Identities=37%  Similarity=0.680  Sum_probs=93.0

Q ss_pred             eeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCc
Q psy3671         171 KETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPA  250 (266)
Q Consensus       171 ~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~  250 (266)
                      .+.|..|.|+|.|.|++++|+|.+++|+|+|+|+|+|+++.+|||++|||.|+|++|++++|+|+||||+||+|.||+ .
T Consensus         2 ~~~~~~I~V~V~~~yleeQS~P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~-~   80 (126)
T COG2967           2 MASSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGE-E   80 (126)
T ss_pred             CcccCceEEEEeeEEccccCCcccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCC-c
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             eEEeeceEecCCceeC
Q psy3671         251 FQYSSHVSLQAPSGHM  266 (266)
Q Consensus       251 F~Y~S~~~l~t~~G~M  266 (266)
                      |+|+|+|.|+||.|.|
T Consensus        81 y~YtSg~~l~Tp~G~M   96 (126)
T COG2967          81 YQYTSGCPLDTPSGTM   96 (126)
T ss_pred             eEEcCCcCccCCcceE
Confidence            9999999999999998

>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO)

Probab=99.98  E-value=6.5e-33  Score=216.55  Aligned_cols=80  Identities=43%  Similarity=0.742  Sum_probs=71.1

Q ss_pred             ecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCceEEeeceEecCCcee
Q psy3671         186 MGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGH  265 (266)
Q Consensus       186 ~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~F~Y~S~~~l~t~~G~  265 (266)
                      +|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||++|+|.||+ +|+|+|+|.|+||.|+
T Consensus         1 ~~e~S~p~~~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe-~f~Y~S~~~l~t~~G~   79 (90)
T PF04379_consen    1 VPEQSDPSQNRYVFAYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGE-SFEYTSGCPLSTPSGS   79 (90)
T ss_dssp             -GGG-BGGGTBEEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTE-EEEEEEEEEESSSEEE
T ss_pred             CccccCCCCCeEEEEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCC-cEEEcCCCCcCCCCEE
Confidence            589999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             C
Q psy3671         266 M  266 (266)
Q Consensus       266 M  266 (266)
                      |
T Consensus        80 M   80 (90)
T PF04379_consen   80 M   80 (90)
T ss_dssp             E
T ss_pred             E
Confidence            8

F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.

>PRK14129 heat shock protein HspQ; Provisional

Probab=99.94  E-value=8.5e-28  Score=190.11  Aligned_cols=90  Identities=21%  Similarity=0.375  Sum_probs=83.1

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhcccccee-
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAV-   91 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~v-   91 (266)
                      .+||.+||+|+||+|||||||        +|+||.|.++++||  .+++++++.|+|||||||+++.|..|       | 
T Consensus         3 ~akF~IGQ~VrHrl~~yrGVV--------~DVDP~fs~~e~w~--~~ia~~~p~kdqPwYHvl~en~~~~~-------v~   65 (105)
T PRK14129          3 ASKFGIGQQVRHSLLGYLGVV--------VDIDPEYSLEEPSP--DELAVNDELRAAPWYHVVMEDDDGQP-------VH   65 (105)
T ss_pred             cccccCCcEEEEeecCCCeEE--------EeeCCCcCCCchhH--HhhccCCCccCCCceEEEEEcCCCce-------EE
Confidence            689999999999999999999        99999999999999  77788888999999999999999874       5 


Q ss_pred             eeeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhcc
Q psy3671          92 TFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVH  139 (266)
Q Consensus        92 t~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~  139 (266)
                      ||                  |||+||+++++  ++|+.||.++++|..
T Consensus        66 tY------------------VaE~nL~~d~s--~epi~hP~l~elf~~   93 (105)
T PRK14129         66 TY------------------LAEAQLSSELQ--DEHPEQPSMDELAES   93 (105)
T ss_pred             EE------------------eeecccCCCCC--CCCCCCCCHHHHHHH
Confidence            85                  59999999998  899999999999975

>COG3785 Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=1.4e-26  Score=183.33  Aligned_cols=95  Identities=19%  Similarity=0.433  Sum_probs=87.6

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCcc-ccCCCCceEEEEeeCCCcchhcccccee
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKE-VKSKTHTFYQVLIDSRDCPYIRAQTEAV   91 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~-~~~~~q~fYqvLvD~rD~~~~~~q~~~v   91 (266)
                      .+||.+||+|+||+|||||||        ||+||++.++|+||  .+++.+ ++.|+|||||+|+++.|.+       ++
T Consensus        12 ~aKF~IGQvVRHrlfpfrGVV--------~DvDPeyanteew~--~~ip~~~rp~rdqPfYHllaEnde~~-------yv   74 (116)
T COG3785          12 AAKFGIGQVVRHRLFPFRGVV--------FDVDPEYANTEEWP--DEIPVNIRPLRDQPFYHLLAENDETE-------YV   74 (116)
T ss_pred             HhhcchhhhhhhhhcccceEE--------EecCcccccCccCh--hhccccccccccCCceeeeeecCCcc-------ce
Confidence            689999999999999999999        99999999999999  777777 6899999999999999988       58


Q ss_pred             eeeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhccCCCCC
Q psy3671          92 TFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKD  144 (266)
Q Consensus        92 t~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~~~~~~  144 (266)
                      |||                  |++||+++.+  .+|+.||.+|++|+..++|.
T Consensus        75 aYv------------------sEqnL~~d~s--dep~~~Pqidelf~~~~~g~  107 (116)
T COG3785          75 AYV------------------SEQNLVSDLS--DEPPRHPQIDELFDKIRKGL  107 (116)
T ss_pred             eee------------------hhhhcccccc--CCCCCCCCHHHHHHhhhccc
Confidence            855                  9999999998  89999999999999888774

>TIGR02097 yccV hemimethylated DNA binding domain

Probab=99.92  E-value=1.2e-25  Score=178.92  Aligned_cols=96  Identities=26%  Similarity=0.442  Sum_probs=82.6

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhccccceee
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVT   92 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~vt   92 (266)
                      .+||++||+|+||+|||||||        +|.|+.+.++|+|+....... .+.|+||||+||+|+++..      ..+|
T Consensus         1 ~~kf~IGqvvrHr~~~yrGVI--------~gwDp~~~~~eeW~~~~~~~~-~p~~~qPfYhvLv~~~~~~------~~~a   65 (101)
T TIGR02097         1 AAKFRIGQVVRHKLFGYRGVV--------IDVDPEYSNTEEWLDAIPVEI-RPLRDQPFYHVLAEDDEGL------PYVA   65 (101)
T ss_pred             CceecCCCEEEecccCCCEEE--------EeEChhccCChHHHHhhhccc-CcccCCCceEEEEeCCCCc------ceeE
Confidence            479999999999999999999        889999999999994443332 5569999999999999866      1467


Q ss_pred             eeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhccCCCC
Q psy3671          93 FLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDK  143 (266)
Q Consensus        93 ~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~~~~~  143 (266)
                                        |||++||++..+  +.||+||.+++||....++
T Consensus        66 ------------------YVaE~nL~~~~~--~~~i~hP~~~~~F~~~~~~   96 (101)
T TIGR02097        66 ------------------YVAEQNLLYDDS--DEPIEHPQVDELFDGFDEG   96 (101)
T ss_pred             ------------------EeehhhcccCCC--CCCCCCCCHHHHHhhhccC
Confidence                              559999999987  7999999999999988865

This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.

>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria

Probab=99.91  E-value=4.9e-25  Score=175.00  Aligned_cols=95  Identities=29%  Similarity=0.548  Sum_probs=49.6

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhccccceee
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVT   92 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~vt   92 (266)
                      ++||++||+|+||+|||||||        ++.|+.++++++|++....... +.++||||+||+|.+|++       .++
T Consensus         1 ~~~f~vGqvv~Hr~~~y~GVI--------vgwD~~~~~~~~W~~~~~~~~~-~~~~qPfY~vLv~~~~~~-------~~~   64 (100)
T PF08755_consen    1 NVKFRVGQVVRHRRYGYRGVI--------VGWDPECQAPEEWIEQMGVDNL-PRRNQPFYHVLVDDRDSP-------PVR   64 (100)
T ss_dssp             --SS-TT-EEEETTT--EEEE--------EEEE-------------------------EEEEEEE-SS---------EEE
T ss_pred             CcccccCCEEEEeeeCccEEE--------ECcccccCCCchHHHhcccccc-ccCCCCcEEEEEecCCcc-------ceE
Confidence            479999999999999999999        5666788889999955554433 349999999999999986       345


Q ss_pred             eeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhccCCCC
Q psy3671          93 FLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDK  143 (266)
Q Consensus        93 ~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~~~~~  143 (266)
                                        ||+|+||+|..+  +.+++||.+++||+..+.+
T Consensus        65 ------------------YVaEenL~~~~~--~~~i~hp~i~~yF~~fd~~   95 (100)
T PF08755_consen   65 ------------------YVAEENLEPDST--PEPINHPEIGRYFKRFDGG   95 (100)
T ss_dssp             ------------------EEEGGGEEE-----S--TT-HHHHHHHHHHTT-
T ss_pred             ------------------EecccccccCCC--CCCcCChHHHHHHHhhCCC
Confidence                              669999999876  8899999999999988865

YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.

>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A

Probab=86.35  E-value=3  Score=34.70  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=54.2

Q ss_pred             eeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEec---CCccCCCceeeC
Q psy3671         170 HKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG---RGVVGQEPVLSK  246 (266)
Q Consensus       170 ~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G---~GVVG~~P~L~p  246 (266)
                      ...++++|.|-....=.+.-|..++..|-=+|.|.+.|++.+++.|-.=..+-++.+|+.--.++   .=.-|   .|.|
T Consensus        20 ~a~~~d~i~V~At~~~~Gs~sv~~k~~ytktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~f~ldTVd~~L~~g---~lK~   96 (124)
T PF14263_consen   20 NASAPDNIAVYATEKSQGSVSVGGKSFYTKTFDVTVANLSDKDIDLSKMCFKAYSPDGKEFKLDTVDEELTSG---TLKP   96 (124)
T ss_dssp             -----SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEEEEEE-GGGG-S---EE-T
T ss_pred             hhccCCCeEEEEEecCCccEeecCccceEEEEEEEEecCCCCccccccchhhhccccCCEEEecccchhhhhc---cccC
Confidence            34567899999999999999999999999999999999999999999999999999987544433   22223   7888


Q ss_pred             CC
Q psy3671         247 SL  248 (266)
Q Consensus       247 ge  248 (266)
                      |+
T Consensus        97 g~   98 (124)
T PF14263_consen   97 GE   98 (124)
T ss_dssp             T-
T ss_pred             CC
Confidence            86

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2f1e_A	127	Solution Structure Of Apag Protein Length = 127		1e-10
1tza_A	134	X-Ray Structure Of Northeast Structural Genomics Co		5e-10
1xq4_A	139	Crystal Structure Of The Putative Apaa Protein From		8e-09
1xvs_A	126	Crystal Structure Of Apag Protein From Vibrio Chole		4e-07

>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein Length = 127

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 177 VRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRG 236
           V V V P ++  + +P    Y + Y IR++N G +  +L  RHW+I   +G  E V G G
Sbjct: 9   VEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEG 68
Query: 237 VVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           VVG++P L +   AF Y+S V L+   G M
Sbjct: 69  VVGEQPWL-RPGEAFHYTSGVLLETEQGQM 97

>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics Consortium Target Sor45 Length = 134

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 176 NVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGR 235
           ++RV V   Y+  + SP    Y + Y I + NLGE   +L  RHW I   +G    V+G 
Sbjct: 7   SIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGA 66
Query: 236 GVVGQEPVLSKSLPAFQYSSHVSLQAPSG 264
           GVVG+ P +  +  A+QY+S   L  P G
Sbjct: 67  GVVGETPTIPPNT-AYQYTSGTVLDTPFG 94

>pdb|1XQ4|A Chain A, Crystal Structure Of The Putative Apaa Protein From Bordetella Pertussis, Northeast Structural Genomics Target Ber40 Length = 139

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 176 NVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGR 235
           ++ V+V P Y+  +  P+   Y + Y +R+ N G    Q+  RHW I      ++ VRG 
Sbjct: 12  DLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGL 71
Query: 236 GVVGQEPVLSKSLPAFQYSSHVSLQAPSG 264
           GVVGQ+P+L+     F+Y+S   L  P G
Sbjct: 72  GVVGQQPLLAPGE-TFEYTSGCPLPTPIG 99

>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae Length = 126

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 177 VRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRG 236
           +++ V   Y+  + +P    + + Y I ++NL   TVQL  R W I    G    V G G
Sbjct: 8   IKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLXSRRWLITDADGKQTVVEGDG 67
Query: 237 VVGQEPVLSKSLPAFQYSSHVSLQAPSG 264
           VVG++P + K+   + YSS  +L  P G
Sbjct: 68  VVGEQPRI-KANDEYTYSSGTALDTPVG 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	9e-35
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	2e-32
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	3e-32
1xq4_A	139	Protein APAG; all beta protein, structural genomic	4e-32
1vbv_A	105	Hypothetical protein B0966; protein degradation, s	2e-07

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Length = 134

 Score =  121 bits (304), Expect = 9e-35
 Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLET 231
               ++RV V   Y+  + SP    Y + Y I + NLGE   +L  RHW I   +G    
Sbjct: 3   ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSE 62

Query: 232 VRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           V+G GVVG+ P +     A+QY+S   L  P G M
Sbjct: 63  VQGAGVVGETPTI-PPNTAYQYTSGTVLDTPFGIM 96

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Length = 126

 Score =  114 bits (287), Expect = 2e-32
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
           +   +++ V   Y+  + +P    + + Y I ++NL   TVQL  R W I    G    V
Sbjct: 4   SLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVV 63

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            G GVVG++P + K+   + YSS  +L  P G M
Sbjct: 64  EGDGVVGEQPRI-KANDEYTYSSGTALDTPVGVM 96

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Length = 127

 Score =  114 bits (286), Expect = 3e-32
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 171 KETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLE 230
            +    V V V P ++  + +P    Y + Y IR++N G +  +L  RHW+I   +G  E
Sbjct: 3   DDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTE 62

Query: 231 TVRGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            V G GVVG++P L +   AF Y+S V L+   G M
Sbjct: 63  QVDGEGVVGEQPWL-RPGEAFHYTSGVLLETEQGQM 97

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Length = 139

 Score =  114 bits (286), Expect = 4e-32
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
              ++ V+V P Y+  +  P+   Y + Y +R+ N G    Q+  RHW I      ++ V
Sbjct: 9   KPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEV 68

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           RG GVVGQ+P+L+     F+Y+S   L  P G M
Sbjct: 69  RGLGVVGQQPLLAPG-ETFEYTSGCPLPTPIGTM 101

>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1 Length = 105

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 36/127 (28%)

Query: 12  VQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTF 71
           +  K+  GQ   H + GY G+V+          DI             +    + +   +
Sbjct: 2   IASKFGIGQQVRHSLLGYLGVVV----------DIDPVYSLSEPSPDELAVNDELRAAPW 51

Query: 72  YQVLIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILP-YSCSH-EQPLH 129
           Y V+++  +   +                          Y+A   +       H EQP  
Sbjct: 52  YHVVMEDDNGLPVHT------------------------YLAEAQLSSELQDEHPEQPSM 87

Query: 130 HELFDKF 136
            EL    
Sbjct: 88  DELAQTI 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	100.0
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	100.0
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	100.0
1xq4_A	139	Protein APAG; all beta protein, structural genomic	100.0
1vbv_A	105	Hypothetical protein B0966; protein degradation, s	99.94
3nrf_A	106	APAG protein; structural genomics, joint center fo	92.53

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=100.00  E-value=7.8e-40  Score=268.98  Aligned_cols=97  Identities=35%  Similarity=0.652  Sum_probs=91.5

Q ss_pred             ceeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCC
Q psy3671         169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSL  248 (266)
Q Consensus       169 ~~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge  248 (266)
                      +++++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+
T Consensus         1 ~~~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe   80 (127)
T 2f1e_A            1 MQDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGE   80 (127)
T ss_dssp             -----CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTC
T ss_pred             CccceECCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEeeceEecCCceeC
Q psy3671         249 PAFQYSSHVSLQAPSGHM  266 (266)
Q Consensus       249 ~~F~Y~S~~~l~t~~G~M  266 (266)
                       +|+|+|||.|+||.|+|
T Consensus        81 -~f~YtSg~~L~tp~G~M   97 (127)
T 2f1e_A           81 -AFHYTSGVLLETEQGQM   97 (127)
T ss_dssp             -EEEEEEEEEESSSCEEE
T ss_pred             -ceEEeCCcCcCCCcEEE
Confidence             99999999999999998

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=100.00  E-value=3.3e-39  Score=264.86  Aligned_cols=95  Identities=31%  Similarity=0.544  Sum_probs=93.4

Q ss_pred             eeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCc
Q psy3671         171 KETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPA  250 (266)
Q Consensus       171 ~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~  250 (266)
                      .++|+||+|+|.|+|+|++|+|.+++|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +
T Consensus         2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~   80 (126)
T 1xvs_A            2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-E   80 (126)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-E
T ss_pred             CcccCCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-c
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             eEEeeceEecCCceeC
Q psy3671         251 FQYSSHVSLQAPSGHM  266 (266)
Q Consensus       251 F~Y~S~~~l~t~~G~M  266 (266)
                      |+|+|+|.|+||.|+|
T Consensus        81 f~YtSg~~L~tp~G~M   96 (126)
T 1xvs_A           81 YTYSSGTALDTPVGVM   96 (126)
T ss_dssp             EEEEEEEEESSSEEEE
T ss_pred             eEEeCCcCcCCCcEEE
Confidence            9999999999999998

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=100.00  E-value=7.3e-39  Score=265.23  Aligned_cols=94  Identities=36%  Similarity=0.646  Sum_probs=92.7

Q ss_pred             eccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCce
Q psy3671         172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAF  251 (266)
Q Consensus       172 ~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~F  251 (266)
                      ++|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +|
T Consensus         3 ~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe-~F   81 (134)
T 1tza_A            3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNT-AY   81 (134)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTE-EE
T ss_pred             CccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCC-ce
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             EEeeceEecCCceeC
Q psy3671         252 QYSSHVSLQAPSGHM  266 (266)
Q Consensus       252 ~Y~S~~~l~t~~G~M  266 (266)
                      +|+|||.|+||.|+|
T Consensus        82 ~YtSg~~L~Tp~G~M   96 (134)
T 1tza_A           82 QYTSGTVLDTPFGIM   96 (134)
T ss_dssp             EEEEEEEESSSEEEE
T ss_pred             EEcCCcCcCCCceEE
Confidence            999999999999998

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=100.00  E-value=1.2e-38  Score=265.33  Aligned_cols=96  Identities=33%  Similarity=0.607  Sum_probs=93.5

Q ss_pred             eeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCC
Q psy3671         170 HKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLP  249 (266)
Q Consensus       170 ~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~  249 (266)
                      ..++|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ 
T Consensus         6 ~~~tT~gI~V~V~~~y~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe-   84 (139)
T 1xq4_A            6 RPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGE-   84 (139)
T ss_dssp             -CCCSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTC-
T ss_pred             cccccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCC-
Confidence            3478899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ceEEeeceEecCCceeC
Q psy3671         250 AFQYSSHVSLQAPSGHM  266 (266)
Q Consensus       250 ~F~Y~S~~~l~t~~G~M  266 (266)
                      +|+|+|+|.|+||.|+|
T Consensus        85 ~F~YtSg~~L~Tp~G~M  101 (139)
T 1xq4_A           85 TFEYTSGCPLPTPIGTM  101 (139)
T ss_dssp             EEEEEEEEEESSSEEEE
T ss_pred             ceEEcCCcCcCCCceEE
Confidence            99999999999999998

>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1

Probab=99.94  E-value=6e-28  Score=192.36  Aligned_cols=99  Identities=18%  Similarity=0.296  Sum_probs=69.5

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhccccceee
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVT   92 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~vt   92 (266)
                      .+||++||+|+||+|||||||        +|.|+.++++|+|+.  .++.+.++|+|||||||+|++|+++       + 
T Consensus         3 ~~kf~IGqvvrHr~~gyrGVI--------~d~Dp~~~~~eew~~--~~~~~~~~~~QPfYhVL~e~~~~~~-------~-   64 (105)
T 1vbv_A            3 ASKFGIGQQVRHSLLGYLGVV--------VDIDPVYSLSEPSPD--ELAVNDELRAAPWYHVVMEDDNGLP-------V-   64 (105)
T ss_dssp             CCSSCTTCEEEETTTCCEEEE--------EEEECC--------------------CCCEEEEEEECSSCCE-------E-
T ss_pred             cceecCCCEEEecccCCCEEE--------EeECcccCCCHHHHH--hccccCccCCCCceEEEEeCCCCce-------e-
Confidence            689999999999999999999        789999999999994  4455567899999999999999773       3 


Q ss_pred             eeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhccCCCCCCCccc
Q psy3671          93 FLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVA  149 (266)
Q Consensus        93 ~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~~~~~~~~~v~  149 (266)
                                      +.||||+||+|+++  +.||.||.++++|..+.++  .+.+
T Consensus        65 ----------------~~YVaEenL~~~~s--~~~i~HP~i~~~F~~f~~~--~y~p  101 (105)
T 1vbv_A           65 ----------------HTYLAEAQLSSELQ--DEHPEQPSMDELAQTIRKQ--LQAP  101 (105)
T ss_dssp             ----------------EEEEEGGGEEECCC--SCCTTCHHHHHHHHHHTTC------
T ss_pred             ----------------eeEEcHHhccccCC--CCCcCCCCHHHHhHhhcCC--cccc
Confidence                            23679999999998  7899999999999998865  3544

>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A

Probab=92.53  E-value=0.43  Score=37.47  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             eccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEec--CCccCCCceeeCCC
Q psy3671         172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG--RGVVGQEPVLSKSL  248 (266)
Q Consensus       172 ~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G--~GVVG~~P~L~pge  248 (266)
                      +++++|.|-+.+.=.+.-|..++..|-=+|.|.+.|++...+.|-.=..+.++.+|+.--.++  +-..  .=.|.||+
T Consensus         2 ~~~d~v~V~At~k~~GS~s~~~k~~ytktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~--~g~lk~g~   78 (106)
T 3nrf_A            2 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPGA   78 (106)
T ss_dssp             ---CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGG--CSEECTTC
T ss_pred             CCcCcEEEEeeccccccEEeCCeeEEEEEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhh--hccccCCC
Confidence            467899999999999999999999999999999999999999999999999999998655554  1112  22788886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1xvsa_	124	b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}	2e-32
d1tzaa_	132	b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId:	4e-31
d1xq4a_	123	b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 5	9e-29
d1vbva1	95	b.34.17.1 (A:3-97) Hypothetical protein YccV {Esch	6e-05

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

 Score =  113 bits (284), Expect = 2e-32
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
           +   +++ V   Y+  + +P    + + Y I ++NL   TVQL  R W I    G    V
Sbjct: 4   SLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVV 63

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            G GVVG++P + K+   + YSS  +L  P G M
Sbjct: 64  EGDGVVGEQPRI-KANDEYTYSSGTALDTPVGVM 96

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Length = 132

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

 Score =  110 bits (276), Expect = 4e-31
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
              ++RV V   Y+  + SP    Y + Y I + NLGE   +L  RHW I   +G    V
Sbjct: 2   LDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEV 61

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           +G GVVG+ P +     A+QY+S   L  P G M
Sbjct: 62  QGAGVVGETPTI-PPNTAYQYTSGTVLDTPFGIM 94

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

 Score =  103 bits (259), Expect = 9e-29
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 176 NVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGR 235
           ++ V+V P Y+  +  P+   Y + Y +R+ N G    Q+  RHW I      ++ VRG 
Sbjct: 6   DLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGL 65

Query: 236 GVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GVVGQ+P+L+     F+Y+S   L  P G M
Sbjct: 66  GVVGQQPLLAPG-ETFEYTSGCPLPTPIGTM 95

>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: YccV-like
family: YccV-like
domain: Hypothetical protein YccV
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 35/122 (28%)

Query: 15  KYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQV 74
           K+  GQ   H + GY G+V+          DI             +    + +   +Y V
Sbjct: 3   KFGIGQQVRHSLLGYLGVVV----------DIDPVYSLSEPSPDELAVNDELRAAPWYHV 52

Query: 75  LIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFD 134
           +++  +   +                          Y+A   +       E P    + +
Sbjct: 53  VMEDDNGLPVHT------------------------YLAEAQLSSEL-QDEHPEQPSMDE 87

Query: 135 KF 136
             
Sbjct: 88  LA 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	100.0
d1xvsa_	124	ApaG {Vibrio cholerae [TaxId: 666]}	100.0
d1xq4a_	123	ApaG {Bordetella pertussis [TaxId: 520]}	100.0
d1vbva1	95	Hypothetical protein YccV {Escherichia coli [TaxId	99.93

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=8.4e-38  Score=256.29  Aligned_cols=94  Identities=36%  Similarity=0.646  Sum_probs=92.6

Q ss_pred             eccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCce
Q psy3671         172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAF  251 (266)
Q Consensus       172 ~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~F  251 (266)
                      ++|+||+|+|.|+|++++|+|.+.+|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +|
T Consensus         1 a~t~gI~V~V~t~y~~e~S~p~~~~y~F~Y~ItI~N~~~~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~qPvl~PGe-~f   79 (132)
T d1tzaa_           1 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNT-AY   79 (132)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTE-EE
T ss_pred             CccCCEEEEEEEEEchhcCCCCCCeEEEEEEEEEEeCCCCCEEEEeeEEEEECCCCCEEEEeCCCccCCcCccCCCC-CE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             EEeeceEecCCceeC
Q psy3671         252 QYSSHVSLQAPSGHM  266 (266)
Q Consensus       252 ~Y~S~~~l~t~~G~M  266 (266)
                      +|+|+|.|+||.|+|
T Consensus        80 ~Y~S~~~l~t~~G~M   94 (132)
T d1tzaa_          80 QYTSGTVLDTPFGIM   94 (132)
T ss_dssp             EEEEEEEESSSEEEE
T ss_pred             EEeCCCCccCCceEE
Confidence            999999999999998

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

Probab=100.00  E-value=8.1e-37  Score=248.11  Aligned_cols=95  Identities=31%  Similarity=0.544  Sum_probs=92.8

Q ss_pred             eeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCc
Q psy3671         171 KETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPA  250 (266)
Q Consensus       171 ~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~  250 (266)
                      +.+|.||+|+|.|+|++++|+|.+.+|+|+|+|+|+|.++++|||++|||+|+|++|+.++|+|+||||+||+|.||+ .
T Consensus         2 d~~~~~I~V~V~~~y~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQLlsR~W~I~d~~g~~~~V~G~GVVG~qPvl~PGe-~   80 (124)
T d1xvsa_           2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-E   80 (124)
T ss_dssp             BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-E
T ss_pred             CcccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEeeEEEEEeCCCCEEEeccCcccCCCCCcCCCC-C
Confidence            357899999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             eEEeeceEecCCceeC
Q psy3671         251 FQYSSHVSLQAPSGHM  266 (266)
Q Consensus       251 F~Y~S~~~l~t~~G~M  266 (266)
                      |+|+|+|.|+||.|.|
T Consensus        81 f~Y~S~~~l~tp~G~M   96 (124)
T d1xvsa_          81 YTYSSGTALDTPVGVM   96 (124)
T ss_dssp             EEEEEEEEESSSEEEE
T ss_pred             EEEeCCCCccCCCeEE
Confidence            9999999999999998

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

Probab=100.00  E-value=3.8e-36  Score=243.82  Aligned_cols=92  Identities=35%  Similarity=0.640  Sum_probs=90.6

Q ss_pred             cCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCceEE
Q psy3671         174 TENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAFQY  253 (266)
Q Consensus       174 T~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~F~Y  253 (266)
                      +..|+|+|.|.|++++|++.+.+|+|+|+|+|+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +|+|
T Consensus         4 ~~~I~V~V~~~y~~e~S~~~~~~y~F~Y~I~I~N~~~~~vQL~sR~W~I~d~~g~~~eV~G~GVVG~qPvl~PGe-~f~Y   82 (123)
T d1xq4a_           4 PYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGE-TFEY   82 (123)
T ss_dssp             SSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTC-EEEE
T ss_pred             CCcEEEEEEEEEchhcCCCCCCeEEEEEEEEEEECCCCcEEEEeeeEEEEeCCCCEEEccCCCEeCCcccCCCCC-CEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             eeceEecCCceeC
Q psy3671         254 SSHVSLQAPSGHM  266 (266)
Q Consensus       254 ~S~~~l~t~~G~M  266 (266)
                      +|+|.|+||.|+|
T Consensus        83 ~S~~~l~tp~G~M   95 (123)
T d1xq4a_          83 TSGCPLPTPIGTM   95 (123)
T ss_dssp             EEEEEESSSEEEE
T ss_pred             eCCCCcCCCCeEE
Confidence            9999999999998

>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: YccV-like
family: YccV-like
domain: Hypothetical protein YccV
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.8e-27  Score=182.60  Aligned_cols=91  Identities=20%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhccccceee
Q psy3671          13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVT   92 (266)
Q Consensus        13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~vt   92 (266)
                      .+||++||+|+||+|||||||        +|.|+.+.++++|+  ..++.+.++|+||||+||||++|...      .+|
T Consensus         1 ~aKF~IGqivrHr~~~yrGVI--------~~wDp~~~~~~eW~--~~~~~~~~~r~QPfYhvLv~~~~~~~------~~t   64 (95)
T d1vbva1           1 ASKFGIGQQVRHSLLGYLGVV--------VDIDPVYSLSEPSP--DELAVNDELRAAPWYHVVMEDDNGLP------VHT   64 (95)
T ss_dssp             CCSSCTTCEEEETTTCCEEEE--------EEEECC--------------------CCCEEEEEEECSSCCE------EEE
T ss_pred             CCccccCcEEEEeecCcCEEE--------EeeEEEecCCHHHH--HhccccCCCCCCCcEEEEEEcCCCcE------EEE
Confidence            479999999999999999999        89999999999999  45555667899999999999998542      456


Q ss_pred             eeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhcc
Q psy3671          93 FLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVH  139 (266)
Q Consensus        93 ~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~  139 (266)
                                        ||||+||+++.+  +.||.||+++++|..
T Consensus        65 ------------------YVaEeNL~~d~~--~~~i~HP~i~el~e~   91 (95)
T d1vbva1          65 ------------------YLAEAQLSSELQ--DEHPEQPSMDELAQT   91 (95)
T ss_dssp             ------------------EEEGGGEEECCC--SCCTTCHHHHHHHHH
T ss_pred             ------------------EecchhcccCCC--CCCCCCCCHHHHHHH
Confidence                              569999999887  689999999999975