Psyllid ID: psy3738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHEHHHEHHcccccEEEEEcHHHEEEEEHHEccEccc
Coil and Loop (DISEMBL)
MNNKWKNVLFVISSATAEATTTFLLScltpscpfvfpdqdSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNnrqsleglsvRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Flexible Loop (DISEMBL)
MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCfvsvgielwkinkigt
Low Complexity Region (SEG)
MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLsvrsvffnvfqsvvvLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Disordered region (IsUnstruct)
****WKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK***
Disordered Region (DISOPRED)
***KWKNVLFVIS***************************SLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Disordered Region (DISEMBL)
MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Disordered Region (DISPRO)
*NNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q8VBZ3	664	Cleft lip and palate tran	yes	N/A	0.713	0.146	0.742	5e-37
Q2NL17	670	Cleft lip and palate tran	yes	N/A	0.713	0.144	0.731	9e-37
O96005	669	Cleft lip and palate tran	yes	N/A	0.713	0.144	0.731	1e-36
Q6DEL2	631	Cleft lip and palate tran	yes	N/A	0.713	0.153	0.670	1e-34
Q54RJ1	619	CLPTM1-like membrane prot	yes	N/A	0.713	0.156	0.443	3e-19
Q8BXA5	539	Cleft lip and palate tran	no	N/A	0.705	0.178	0.416	8e-17
Q96KA5	538	Cleft lip and palate tran	no	N/A	0.705	0.178	0.395	2e-16
Q5R7B1	538	Cleft lip and palate tran	no	N/A	0.705	0.178	0.395	2e-16
Q5ZKJ0	536	Cleft lip and palate tran	yes	N/A	0.705	0.179	0.395	4e-16
Q6DHU1	538	Cleft lip and palate tran	no	N/A	0.735	0.185	0.37	9e-16

>sp|Q8VBZ3|CLPT1_MOUSE Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1

 Score =  152 bits (385), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/97 (74%), Positives = 86/97 (88%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           +QDS+K ALLETSPYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGLSVRSVFF V
Sbjct: 341 EQDSVKVALLETSPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS VVLLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct: 401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

May play a role in T-cell development.
Mus musculus (taxid: 10090)

>sp|Q2NL17|CLPT1_BOVIN Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1

 Score =  151 bits (382), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/97 (73%), Positives = 86/97 (88%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGLSVRSVFF V
Sbjct: 341 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS VVLLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct: 401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

May play a role in T-cell development.

Bos taurus (taxid: 9913)

>sp|O96005|CLPT1_HUMAN Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/97 (73%), Positives = 86/97 (88%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGLSVRSVFF V
Sbjct: 341 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS VVLLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct: 401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

May play a role in T-cell development.

Homo sapiens (taxid: 9606)

>sp|Q6DEL2|CLPT1_DANRE Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/97 (67%), Positives = 84/97 (86%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           DQDS+K ALLET+PYLL  T++VSI+HS+FE LAFKNDIQFWN+RQSLEGLSVRS+ F V
Sbjct: 339 DQDSVKVALLETNPYLLGLTIVVSIVHSIFEFLAFKNDIQFWNSRQSLEGLSVRSIIFGV 398

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS+VVLLY+LDN+ N ++++S F+ + I+ WKI K+
Sbjct: 399 FQSLVVLLYILDNETNFVVQVSVFIGLLIDFWKITKV 435

May play a role in T-cell development.

Danio rerio (taxid: 7955)

>sp|Q54RJ1|CNRB_DICDI CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 63/97 (64%)

Query: 40  DSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQ 99
           D  K  L +  P++L  T+IVS+LH++FE LAFKNDIQFW N +S+EGLSV+++  N   
Sbjct: 312 DEFKRMLTDNDPWILGLTLIVSVLHTIFEFLAFKNDIQFWKNNKSMEGLSVKTITLNCVC 371

Query: 100 SVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIGT 136
             ++ LY+LDN+ + +I  S      +E WK+ K  T
Sbjct: 372 MGIIFLYLLDNETSYMILASSGFGFLVEFWKLGKAMT 408

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BXA5|CLP1L_MOUSE Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 61/96 (63%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           D D LK   ++T+ YLLA T  V+  H +F+ LAFK+DI FW  ++S+ G+S ++V +  
Sbjct: 272 DADELKGIFVDTNLYLLALTFFVAAFHLLFDFLAFKSDISFWKKKKSMIGMSTKAVLWRC 331

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK 133
           F +VV+ L++LD   + L+ I   V   IELWK+ K
Sbjct: 332 FSTVVIFLFLLDEQTSLLVLIPAGVGAAIELWKVKK 367

Enhances cisplatin-mediated apoptosis, when overexpressed.

Mus musculus (taxid: 10090)

>sp|Q96KA5|CLP1L_HUMAN Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 60/96 (62%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           D D +K   ++T+ Y LA T  V+  H +F+ LAFKNDI FW  ++S+ G+S ++V +  
Sbjct: 271 DADEVKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTKAVLWRC 330

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK 133
           F +VV+ L++LD   + L+ +   V   IELWK+ K
Sbjct: 331 FSTVVIFLFLLDEQTSLLVLVPAGVGAAIELWKVKK 366

Enhances cisplatin-mediated apoptosis, when overexpressed.

Homo sapiens (taxid: 9606)

>sp|Q5R7B1|CLP1L_PONAB Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 60/96 (62%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           D D +K   ++T+ Y LA T  V+  H +F+ LAFKNDI FW  ++S+ G+S ++V +  
Sbjct: 271 DADEVKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKKSMIGMSTKAVLWRC 330

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK 133
           F +VV+ L++LD   + L+ +   V   IELWK+ K
Sbjct: 331 FSTVVIFLFLLDEQTSLLVLVPAGVGAAIELWKVKK 366

Enhances cisplatin-mediated apoptosis, when overexpressed.

Pongo abelii (taxid: 9601)

>sp|Q5ZKJ0|CLP1L_CHICK Cleft lip and palate transmembrane protein 1-like protein OS=Gallus gallus GN=CLPTM1L PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 60/96 (62%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           D D +K   ++T+ Y LA T  V+  H +F+ LAFKNDI FW  ++S+ G+S ++V +  
Sbjct: 271 DADEVKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKKKRSMIGMSTKAVLWRC 330

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK 133
           F +VV+ L++LD   + L+ I   +   IELWK+ K
Sbjct: 331 FSTVVIFLFLLDEQTSLLVLIPAGIGAVIELWKVKK 366

May enhance cisplatin-mediated apoptosis, when overexpressed.

Gallus gallus (taxid: 9031)

>sp|Q6DHU1|CLP1L_DANRE Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%)

Query: 34  FVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSV 93
           F   D D +K   ++T+ Y LA T  V+  H +F+ LAFKNDI FW +++S+ G+S ++V
Sbjct: 267 FTEKDADEIKGIFVDTNLYFLALTFFVAAFHLLFDFLAFKNDISFWKHKKSMVGMSSKAV 326

Query: 94  FFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINK 133
            +  F ++V+ LY+LD   + L+ +   +   IE+WK+ K
Sbjct: 327 LWRCFSTIVIFLYLLDEQTSLLVLVPAGIGSLIEVWKVKK 366

May enhance cisplatin-mediated apoptosis, when overexpressed.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
193598925	618	PREDICTED: cleft lip and palate transmem	0.713	0.156	0.865	3e-42
312371171	664	hypothetical protein AND_22550 [Anophele	0.867	0.177	0.629	3e-40
158297295	636	AGAP007926-PA [Anopheles gambiae str. PE	0.875	0.187	0.604	4e-39
170032307	664	cleft lip and palate transmembrane prote	0.882	0.180	0.641	4e-39
157113622	677	hypothetical protein AaeL_AAEL006519 [Ae	0.875	0.175	0.634	5e-39
156547325	627	PREDICTED: cleft lip and palate transmem	0.713	0.154	0.783	1e-38
357602249	580	cleft lip and palate transmembrane prote	0.713	0.167	0.783	2e-38
307212218	642	Cleft lip and palate transmembrane prote	0.713	0.151	0.804	2e-38
195114032	643	GI16103 [Drosophila mojavensis] gi|19391	0.882	0.186	0.637	3e-38
91081299	594	PREDICTED: similar to cleft lip and pala	0.713	0.163	0.773	3e-38

>gi|193598925|ref|XP_001945647.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Acyrthosiphon pisum]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 92/97 (94%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           DQDSLKEALLETSPY+LAAT+IVSILHSVFELLAFKNDIQFW  R+SLEGLSVR+VFFNV
Sbjct: 328 DQDSLKEALLETSPYILAATIIVSILHSVFELLAFKNDIQFWKERKSLEGLSVRAVFFNV 387

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQSV+VLLYVLDND NT+IRISCFV +GIE WKINK+
Sbjct: 388 FQSVIVLLYVLDNDTNTIIRISCFVGLGIECWKINKV 424

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371171|gb|EFR19423.1| hypothetical protein AND_22550 [Anopheles darlingi]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 102/135 (75%), Gaps = 17/135 (12%)

Query: 1   MNNKWKNVLFVIS-SATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVI 59
           M NKW N +F  + S  AE+                  DQDSLKEALL+T+PYLL  TV+
Sbjct: 311 MRNKWANNMFTEALSGGAESDE----------------DQDSLKEALLDTNPYLLGITVV 354

Query: 60  VSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRIS 119
           V+ILHSVFELLAFKNDIQFWNNR+SLEGLSVRSVFF VFQSV+VLLYVLDN+ N +I++S
Sbjct: 355 VTILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGVFQSVIVLLYVLDNETNFMIKVS 414

Query: 120 CFVSVGIELWKINKI 134
           CF+ +GIE+WKI K+
Sbjct: 415 CFIGLGIEVWKIQKV 429

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297295|ref|XP_317556.3| AGAP007926-PA [Anopheles gambiae str. PEST] gi|157015126|gb|EAA12218.3| AGAP007926-PA [Anopheles gambiae str. PEST]

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/134 (60%), Positives = 100/134 (74%), Gaps = 15/134 (11%)

Query: 1   MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIV 60
           M NKW N +F  + +    T                 DQDSLKEALL+T+PYLL  T++V
Sbjct: 287 MRNKWANNMFTEALSGGSETDE---------------DQDSLKEALLDTNPYLLGVTIVV 331

Query: 61  SILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISC 120
           ++LHSVFELLAFKNDIQFWNNR+SLEGLSVRSVFF VFQS++VLLYVLDN+ N +I+ISC
Sbjct: 332 TLLHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGVFQSLIVLLYVLDNETNFMIKISC 391

Query: 121 FVSVGIELWKINKI 134
           F+ +GIE+WKI K+
Sbjct: 392 FMGLGIEVWKIQKV 405

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032307|ref|XP_001844023.1| cleft lip and palate transmembrane protein 1 [Culex quinquefasciatus] gi|167872309|gb|EDS35692.1| cleft lip and palate transmembrane protein 1 [Culex quinquefasciatus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/134 (64%), Positives = 100/134 (74%), Gaps = 14/134 (10%)

Query: 1   MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIV 60
           M NKW N +F       EA        LT        DQDSLKE LLET+PYLL  T+ V
Sbjct: 310 MRNKWTNNIF------GEA--------LTGGGQESDEDQDSLKETLLETNPYLLGITIAV 355

Query: 61  SILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISC 120
           SILHS+FELLAFKNDIQFWNNR+SLEGLSVRSVFFNVFQS++VLLYVLDN+ N +I++SC
Sbjct: 356 SILHSIFELLAFKNDIQFWNNRKSLEGLSVRSVFFNVFQSLIVLLYVLDNETNFMIKMSC 415

Query: 121 FVSVGIELWKINKI 134
           FV +GIE+WKI K+
Sbjct: 416 FVGLGIEVWKIQKV 429

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113622|ref|XP_001652027.1| hypothetical protein AaeL_AAEL006519 [Aedes aegypti] gi|108877673|gb|EAT41898.1| AAEL006519-PA [Aedes aegypti]

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 85/134 (63%), Positives = 100/134 (74%), Gaps = 15/134 (11%)

Query: 1   MNNKWKNVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVIV 60
           M NKW N +F       EA T  + S           DQDSLKE LLET+PYLL  T+ V
Sbjct: 320 MRNKWTNNIF------GEALTGGVESD---------EDQDSLKETLLETNPYLLGITIAV 364

Query: 61  SILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISC 120
           SILHSVFELLAFKNDIQFW +R+SLEGLSVRSVFFNVFQS++VLLYVLDN+ N +I+ISC
Sbjct: 365 SILHSVFELLAFKNDIQFWKDRKSLEGLSVRSVFFNVFQSLIVLLYVLDNETNFMIKISC 424

Query: 121 FVSVGIELWKINKI 134
           F+ +GIE+WKI K+
Sbjct: 425 FIGLGIEVWKIQKV 438

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547325|ref|XP_001602053.1| PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Nasonia vitripennis]

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/97 (78%), Positives = 88/97 (90%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           DQD+LKE LLET+PYLL  T++VSI HSVFE LAFKNDIQFWNNR+SLEGLSVRSVFFNV
Sbjct: 338 DQDTLKETLLETNPYLLGMTIVVSIFHSVFEFLAFKNDIQFWNNRKSLEGLSVRSVFFNV 397

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS+VVLLYVLDN+ NTL+RISC + + IE+WKINK+
Sbjct: 398 FQSLVVLLYVLDNETNTLVRISCGIGLLIEIWKINKV 434

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602249|gb|EHJ63322.1| cleft lip and palate transmembrane protein 1 [Danaus plexippus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/97 (78%), Positives = 89/97 (91%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           +QD++KE LL+TSPYLLA T+ VSILHS+FELLAFKNDIQFWNNRQSLEGLSVRSVFFNV
Sbjct: 293 EQDTVKELLLDTSPYLLALTISVSILHSIFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 352

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS VVLLYVLDN+ N ++RISCF+ + IE+WKINK+
Sbjct: 353 FQSTVVLLYVLDNETNVMVRISCFIGLLIEVWKINKV 389

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212218|gb|EFN88050.1| Cleft lip and palate transmembrane protein 1-like protein [Harpegnathos saltator]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 89/97 (91%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           DQD+LKE LLET+PYLL  T+IVSILHSVFE LAFKNDIQFWNNR+SLEGLSVRSVFFNV
Sbjct: 352 DQDTLKETLLETNPYLLGLTIIVSILHSVFEFLAFKNDIQFWNNRKSLEGLSVRSVFFNV 411

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS+VVLLYVLDN+ NT++RISC V + IE+WKINK+
Sbjct: 412 FQSLVVLLYVLDNETNTVVRISCAVGMCIEVWKINKV 448

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114032|ref|XP_002001571.1| GI16103 [Drosophila mojavensis] gi|193912146|gb|EDW11013.1| GI16103 [Drosophila mojavensis]

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/135 (63%), Positives = 101/135 (74%), Gaps = 15/135 (11%)

Query: 1   MNNKWK-NVLFVISSATAEATTTFLLSCLTPSCPFVFPDQDSLKEALLETSPYLLAATVI 59
           M +KW  NVL  I +A+A   T                DQDSLKE LL+T+ YLL  TV 
Sbjct: 306 MKSKWAGNVLGEIMAASAPEETD--------------EDQDSLKETLLDTNIYLLGITVA 351

Query: 60  VSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSVVVLLYVLDNDANTLIRIS 119
           VSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFF VFQS+++LLYVLDN+ N +IRIS
Sbjct: 352 VSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFGVFQSLIILLYVLDNETNFMIRIS 411

Query: 120 CFVSVGIELWKINKI 134
           CF+ +GIE+WKI+K+
Sbjct: 412 CFIGLGIEVWKIHKV 426

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081299|ref|XP_968887.1| PREDICTED: similar to cleft lip and palate transmembrane protein 1 [Tribolium castaneum] gi|270006092|gb|EFA02540.1| hypothetical protein TcasGA2_TC008245 [Tribolium castaneum]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/97 (77%), Positives = 88/97 (90%)

Query: 38  DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFNV 97
           +QD+LKE L++T+PYLL  T+ VSILHS+FELLAFKNDIQFWNNR SLEGLSVRSVFF V
Sbjct: 319 EQDTLKETLMDTNPYLLGITICVSILHSIFELLAFKNDIQFWNNRNSLEGLSVRSVFFGV 378

Query: 98  FQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           FQS+VVLLYVLDND NTL+RISCF+ +GIE+WKI K+
Sbjct: 379 FQSLVVLLYVLDNDTNTLVRISCFIGLGIEVWKIYKV 415

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
MGI|MGI:1927155	664	Clptm1 "cleft lip and palate a	0.713	0.146	0.608	1.6e-26
RGD|1310959	664	Clptm1 "cleft lip and palate a	0.713	0.146	0.608	1.6e-26
UNIPROTKB|B4DDS3	567	CLPTM1 "Cleft lip and palate t	0.713	0.171	0.597	2.1e-26
UNIPROTKB|F1N779	574	CLPTM1 "Cleft lip and palate t	0.713	0.168	0.597	2.2e-26
UNIPROTKB|O96005	669	CLPTM1 "Cleft lip and palate t	0.713	0.144	0.597	3.5e-26
UNIPROTKB|Q2NL17	670	CLPTM1 "Cleft lip and palate t	0.713	0.144	0.597	3.5e-26
UNIPROTKB|F1RM47	663	CLPTM1 "Uncharacterized protei	0.713	0.146	0.587	4.3e-26
ZFIN|ZDB-GENE-040801-265	631	clptm1 "cleft lip and palate a	0.713	0.153	0.556	2.8e-25
WB|WBGene00011302	618	R166.2 [Caenorhabditis elegans	0.698	0.153	0.515	1e-21
TAIR|locus:2159592	590	AT5G08500 "AT5G08500" [Arabido	0.705	0.162	0.5	4.6e-19

MGI|MGI:1927155 Clptm1 "cleft lip and palate associated transmembrane protein 1" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLETSPYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   341 EQDSVKVALLETSPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

GO:0003674 "molecular_function" evidence=ND

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IMP

RGD|1310959 Clptm1 "cleft lip and palate associated transmembrane protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLETSPYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   341 EQDSVKVALLETSPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

GO:0009897 "external side of plasma membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IEA;ISO

UNIPROTKB|B4DDS3 CLPTM1 "Cleft lip and palate transmembrane protein 1" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   239 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 298

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   299 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 335

GO:0016021 "integral to membrane" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IEA

UNIPROTKB|F1N779 CLPTM1 "Cleft lip and palate transmembrane protein 1 homolog" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   341 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

UNIPROTKB|O96005 CLPTM1 "Cleft lip and palate transmembrane protein 1" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   341 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009897 "external side of plasma membrane" evidence=ISS

GO:0033081 "regulation of T cell differentiation in thymus" evidence=ISS

UNIPROTKB|Q2NL17 CLPTM1 "Cleft lip and palate transmembrane protein 1 homolog" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLET+PYLLA T+IVSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   341 EQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 400

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   401 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 437

GO:0030154 "cell differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|F1RM47 CLPTM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 303 (111.7 bits), Expect = 4.3e-26, P = 4.3e-26
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             +QDS+K ALLET+PYLLA T++VSI+HSVFE LAFKNDIQFWN+RQSLEGL         
Sbjct:   340 EQDSVKVALLETNPYLLALTIVVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGV 399

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ V I+LWKI K+
Sbjct:   400 FQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKV 436

GO:0033081 "regulation of T cell differentiation in thymus" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-265 clptm1 "cleft lip and palate associated transmembrane protein 1" [Danio rerio (taxid:7955)]

 Score = 295 (108.9 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 54/97 (55%), Positives = 71/97 (73%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             DQDS+K ALLET+PYLL  T++VSI+HS+FE LAFKNDIQFWN+RQSLEGL         
Sbjct:   339 DQDSVKVALLETNPYLLGLTIVVSIVHSIFEFLAFKNDIQFWNSRQSLEGLSVRSIIFGV 398

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                   LLY+LDN+ N ++++S F+ + I+ WKI K+
Sbjct:   399 FQSLVVLLYILDNETNFVVQVSVFIGLLIDFWKITKV 435

GO:0003674 "molecular_function" evidence=ND

GO:0030154 "cell differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00011302 R166.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 262 (97.3 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 49/95 (51%), Positives = 66/95 (69%)

Query:    40 DSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXXXX 99
             DS+K+ALLET+P LLA T+IVS+LH+VFE LAFKNDIQFWNNR+ L GL           
Sbjct:   318 DSMKQALLETNPILLAVTMIVSLLHTVFEFLAFKNDIQFWNNRKDLVGLSVRSVLFNIFQ 377

Query:   100 XXXXLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
                  LY+ DN+ NT+++++  + + IE WKI K+
Sbjct:   378 SLIVFLYICDNETNTMVKVTVGIGLLIECWKIPKV 412

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2159592 AT5G08500 "AT5G08500" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 48/96 (50%), Positives = 58/96 (60%)

Query:    38 DQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLXXXXXXXXX 97
             + D LK   LE +PYLL  T+ VS+LHSVF+ LAFKNDIQFWN  +S+EGL         
Sbjct:   313 ESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNF 372

Query:    98 XXXXXXLLYVLDNDANTLIRISCFVSVGIELWKINK 133
                    LY+LDND + +I  S  V V IE WKI K
Sbjct:   373 ICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGK 408

GO:0008150 "biological_process" evidence=ND

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2NL17	CLPT1_BOVIN	No assigned EC number	0.7319	0.7132	0.1447	yes	N/A
Q6DEL2	CLPT1_DANRE	No assigned EC number	0.6701	0.7132	0.1537	yes	N/A
Q8VBZ3	CLPT1_MOUSE	No assigned EC number	0.7422	0.7132	0.1460	yes	N/A
O96005	CLPT1_HUMAN	No assigned EC number	0.7319	0.7132	0.1449	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam05602	437	pfam05602, CLPTM1, Cleft lip and palate transmembr	4e-48

>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1 (CLPTM1)

 Score =  159 bits (404), Expect = 4e-48
 Identities = 54/98 (55%), Positives = 73/98 (74%)

Query: 37  PDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLEGLSVRSVFFN 96
            + D +KE LL+T+PYLLA T IVS+LH VFE LAFKNDIQFW N++S+ GLSVRS+  N
Sbjct: 282 KEADEVKEILLDTNPYLLALTAIVSLLHMVFEFLAFKNDIQFWRNKKSMVGLSVRSILAN 341

Query: 97  VFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKI 134
           VF  +++ LY+LDN+ + +I +S  + + IE WKI K 
Sbjct: 342 VFCQIIIFLYLLDNETSWMILVSQGIGLLIEAWKITKA 379

This family consists of several eukaryotic cleft lip and palate transmembrane protein 1 sequences. Cleft lip with or without cleft palate is a common birth defect that is genetically complex. The nonsyndromic forms have been studied genetically using linkage and candidate-gene association studies with only partial success in defining the loci responsible for orofacial clefting. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family. This family also contains the human cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF05602	438	CLPTM1: Cleft lip and palate transmembrane protein	100.0
KOG2489|consensus	592		100.0

>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects

Probab=100.00  E-value=1.6e-55  Score=378.70  Aligned_cols=122  Identities=44%  Similarity=0.728  Sum_probs=117.5

Q ss_pred             cccccccceeeehhcCC-------CCCCCCCChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhccchhhhhhcCCCcc
Q psy3738          14 SATAEATTTFLLSCLTP-------SCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLE   86 (136)
Q Consensus        14 ~~~~~~~~~~~l~~~~~-------~~~f~~~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr~kksm~   86 (136)
                      +..|.+.+++|+-+..+       +.|++++|+||+||||+|||||||++|++||+||+|||||||||||+|||+||||+
T Consensus       252 ~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~~~d~~K~~~~etn~~lL~~t~~vs~lH~~f~fLAFKnDi~fW~~~k~~~  331 (438)
T PF05602_consen  252 SYSPISLWKWQLYAQMEQSFKQQQQMGFSEKDIDEIKRIFLETNPYLLALTFVVSLLHSVFDFLAFKNDISFWRKRKSME  331 (438)
T ss_pred             EEEecchHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHhcCCHhhhHHHHHHHHHHHHHHHHhhhhHHHHHhccCCcc
Confidence            56789999999877544       88999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhhhcccccc
Q psy3738          87 GLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIG  135 (136)
Q Consensus        87 GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~WKv~K~~  135 (136)
                      |||+||+++|||||+||||||+||||||||++|+|+|++||+||++|++
T Consensus       332 GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv~K~~  380 (438)
T PF05602_consen  332 GLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKVTKAL  380 (438)
T ss_pred             cccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheeeeEEE
Confidence            9999999999999999999999999999999999999999999999986

They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].

>KOG2489|consensus

Probab=100.00  E-value=5.2e-51  Score=363.79  Aligned_cols=122  Identities=50%  Similarity=0.785  Sum_probs=113.9

Q ss_pred             cccccccceeeehhcCC-------CCCCCCCChHHHHHHHhccChhHHHHHHHHHHHHHHHHHhhccchhhhhhcCCCcc
Q psy3738          14 SATAEATTTFLLSCLTP-------SCPFVFPDQDSLKEALLETSPYLLAATVIVSILHSVFELLAFKNDIQFWNNRQSLE   86 (136)
Q Consensus        14 ~~~~~~~~~~~l~~~~~-------~~~f~~~d~DeiK~~~leTNpylL~~T~~VS~LHsvFefLAFKNDI~FWr~kksm~   86 (136)
                      +..|.|.++++|--..+       ++|+.++|.||+|++|+|||||||++|++||++|+|||||||||||||||+||||+
T Consensus       271 ~y~P~sv~K~ql~~~~~~~~q~~~~~g~~~kd~DEvK~~fleTN~yLL~vT~fVS~lH~vFdfLAFKNDIqFWn~rKsme  350 (592)
T KOG2489|consen  271 TYYPLSVFKLQLYASQQMASQWLQSFGFMEKDSDEVKGAFLETNPYLLAVTIFVSILHSVFDFLAFKNDIQFWNKRKSME  350 (592)
T ss_pred             EEEechHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHhcchHHHhccccccc
Confidence            35677777776644333       79999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHhhhhhheeeeeeeCCCceEEeecchhhhhhhhhcccccc
Q psy3738          87 GLSVRSVFFNVFQSVVVLLYVLDNDANTLIRISCFVSVGIELWKINKIG  135 (136)
Q Consensus        87 GLS~rtv~~n~f~q~IIfLYLlDn~TS~lIli~~gig~lIe~WKv~K~~  135 (136)
                      |||+||++||||||+||||||+|||||+||++|+|+|++||+||+.|++
T Consensus       351 GLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m  399 (592)
T KOG2489|consen  351 GLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAM  399 (592)
T ss_pred             cccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEE
Confidence            9999999999999999999999999999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00