Psyllid ID: psy3766

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSNLT
ccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEcccccHHHHcccccccccHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcccccccccEEEEcccccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccHHHHHccccccEEEEEEEEEEHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHccEEEEEcccccHHHHHHHHHccEEEEEcccHHHHHHHHHcccEEEEccccccccEEEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHccccc
ccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEccccccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEEcccEEEEEEEEcccccHcccHEHEccccccHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEcccccHHcccccccccccccEEEEEcccccHHHHHccccccEEEEcccEEEHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccEEccccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHccEEEcHHcccEEEEEEEEEcccEEEEEEcccccHHcccHHHHHHHHHHHHHccc
MEKGIAAKDAIAQILINSRmcakekrpicqdtgIVNVFLKIGMnvrfkgfngsihDVINegvrrgytnpnnilrasivsdphfirkntqdntpavinmelvpgnfldikiaskgggsenktkfamlnpsdsLVDWIMKtvptmgagwcppgilgigiggtPEKAMLMAKKVLMQDINmnsiikngpknkIEELRLELFNKINSlgigaqgmgglsTVLDVKImmypthaaskpvaiipncaatrhghiilngsgpvfmkppslsnwpkikfttnnkkFHYVNLNTLTKKEVSSWRSGEILLlngkiltgrdAAHNRIQYMLskgekipvnfnNRVIYyvgpinpvrnevigpagpttasrMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSlgksihidgpkkWKKYISIENSNLT
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASkgggsenkTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTltkkevsswrsGEILLLngkiltgrdAAHNRIQYMLskgekipvnfNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLgksihidgpkkwkkyisiensnlt
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPgilgigiggTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDkiiklikkqkiAYLVAVGGAAYLiskaiksakiiCFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSNLT
*******KDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIAS**********FAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISI******
***GIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKK***IE*****
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSNLT
**KGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIEN****
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MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYISIENSNLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
P0AC33548 Fumarate hydratase class N/A N/A 0.904 0.775 0.315 1e-43
P0AC34548 Fumarate hydratase class yes N/A 0.904 0.775 0.315 1e-43
P14407548 Fumarate hydratase class N/A N/A 0.908 0.779 0.297 1e-43
Q8X4P8548 Fumarate hydratase class N/A N/A 0.904 0.775 0.315 4e-43
P40720580 Fumarate hydratase class no N/A 0.906 0.734 0.298 1e-40
Q04718514 Fumarate hydratase class N/A N/A 0.908 0.830 0.262 1e-38
Q58690285 Putative fumarate hydrata yes N/A 0.489 0.807 0.366 2e-25
Q58034195 Putative fumarate hydrata no N/A 0.372 0.897 0.383 1e-24
Q8XBK7303 L(+)-tartrate dehydratase N/A N/A 0.463 0.719 0.294 1e-15
Q1R6S0303 L(+)-tartrate dehydratase no N/A 0.455 0.706 0.299 3e-15
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic OS=Escherichia coli (strain K12) GN=fumA PE=1 SV=2 Back     alignment and function desciption
 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 215/453 (47%), Gaps = 28/453 (6%)

Query: 13  QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
           Q L NS + AK   P CQDTG   +  K G  V   G + +    +  GV   Y   N  
Sbjct: 89  QFLRNSDIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGDEA---ALARGVYNTYIEDN-- 143

Query: 73  LRASIVSDPHFIRK-NTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AML 126
           LR S  +     ++ NT  N PA I++  V G+       +KGGGS NKT       A+L
Sbjct: 144 LRYSQNAPLDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALL 203

Query: 127 NPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVL---MQDINMNSIIK 183
            P   L +++++ + T+G   CPP  +   IGGT  +  L   K+      D       +
Sbjct: 204 TPG-KLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNE 262

Query: 184 NGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAAT 243
           +G   +  EL  EL  +  +LG+GAQ  GG     D++++  P H AS PV +  +C+A 
Sbjct: 263 HGQAFRDVELEKELLIEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSAD 321

Query: 244 RHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFH-----YVNLNTLTKK---EVSSWR 295
           R+    +N  G    K   L + P        +K        V+LN   K+   ++S + 
Sbjct: 322 RNIKAKINRQGIWIEK---LEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYP 378

Query: 296 SGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGP 355
               L LNG I+ GRD AH +++  +  GE +P    +  IYY GP         G  GP
Sbjct: 379 VSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGP 438

Query: 356 TTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIK 414
           TTA RMD + + +  + G + M+ K  RS ++    KK    YL ++GG AA L   +IK
Sbjct: 439 TTAGRMDSYVDQLQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIK 498

Query: 415 SAKIICFEDLGMEAIYEFNVENMPVTVAIDSLG 447
           S + + + +LGMEAI++  VE+ P  + +D  G
Sbjct: 499 SLECVEYPELGMEAIWKIEVEDFPAFILVDDKG 531
It functions as an aerobic enzyme in the citric acid cycle. It accounts for about 80% of the fumarase activity when the bacteria grows aerobically.
Escherichia coli (strain K12) (taxid: 83333)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fumA PE=3 SV=2 Back     alignment and function description
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic OS=Escherichia coli (strain K12) GN=fumB PE=1 SV=2 Back     alignment and function description
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic OS=Escherichia coli O157:H7 GN=fumA PE=3 SV=3 Back     alignment and function description
>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fumA PE=3 SV=3 Back     alignment and function description
>sp|Q04718|FUMA_GEOSE Fumarate hydratase class I, aerobic OS=Geobacillus stearothermophilus GN=fumA PE=3 SV=1 Back     alignment and function description
>sp|Q58690|FUMA_METJA Putative fumarate hydratase subunit alpha OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1294 PE=3 SV=1 Back     alignment and function description
>sp|Q58034|FUMB_METJA Putative fumarate hydratase subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0617 PE=3 SV=1 Back     alignment and function description
>sp|Q8XBK7|TTDA_ECO57 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli O157:H7 GN=ttdA PE=3 SV=1 Back     alignment and function description
>sp|Q1R6S0|TTDA_ECOUT L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=ttdA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
340788535518 fumarate hydratase class I, aerobic [Col 0.982 0.891 0.729 0.0
409405380513 fumarate hydratase [Herbaspirillum sp. G 0.982 0.900 0.725 0.0
300310873513 fumarate hydratase [Herbaspirillum serop 0.982 0.900 0.725 0.0
415942121513 Fumarate hydratase protein [Herbaspirill 0.982 0.900 0.725 0.0
398835699513 hydro-lyase, Fe-S type, tartrate/fumarat 0.982 0.900 0.718 0.0
399019450513 hydro-lyase, Fe-S type, tartrate/fumarat 0.985 0.902 0.719 0.0
152980967512 fumarate hydratase, class I [Janthinobac 0.982 0.902 0.709 0.0
134094155512 fumarase A [Herminiimonas arsenicoxydans 0.982 0.902 0.707 0.0
395761117513 fumarate hydratase [Janthinobacterium li 0.982 0.900 0.712 0.0
427402993511 hydrolyase, tartrate alpha subunit/fumar 0.982 0.904 0.707 0.0
>gi|340788535|ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] gi|340553802|gb|AEK63177.1| Fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/462 (72%), Positives = 413/462 (89%)

Query: 2   EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
           E+  AAKDAIAQIL NSRMCA+ KRPICQDTGIVNVFLKIGM+VRF+GF GSI D +NEG
Sbjct: 45  EQSPAAKDAIAQILTNSRMCAEGKRPICQDTGIVNVFLKIGMDVRFEGFKGSITDAVNEG 104

Query: 62  VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
           VRRGY NP+N+LRASIV+DP F RKNT+DNTPAV++MELVPGN +D++IA+KGGGSENKT
Sbjct: 105 VRRGYLNPDNMLRASIVADPQFERKNTKDNTPAVVHMELVPGNTVDVQIAAKGGGSENKT 164

Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSI 181
           KF MLNPSDSLVDW+MKTVPTMGAGWCPPG+LGIGIGGT E+AMLMAK+VLM+DI+M  +
Sbjct: 165 KFVMLNPSDSLVDWVMKTVPTMGAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYDL 224

Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
           +K GP+NK EELR+ELF K+N+LGIGAQG+GGL+TVLDVKIMM+PTHAASKPVA+IPNCA
Sbjct: 225 LKRGPQNKTEELRIELFQKVNALGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCA 284

Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
           ATRHGH +L+GSGP +M+PPSLS WP++ +  + +K   V+LNTLTK+EV+SW+ G+ LL
Sbjct: 285 ATRHGHFVLDGSGPAYMEPPSLSEWPEVHWVPDTEKSKRVDLNTLTKEEVASWKPGQTLL 344

Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRM 361
           LNGK+LTGRDAAH RIQ ML+KGEK+PV+F NRVIYYVGP++PVR+EV+GPAGPTTA+RM
Sbjct: 345 LNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRM 404

Query: 362 DHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICF 421
           D FT+++LE+ GLI+MIGK+ER    I+ IK+ K AYL+AVGGAAYL+SKAIKSA+++ F
Sbjct: 405 DKFTDMMLEQTGLISMIGKSERGPVAIESIKQHKSAYLMAVGGAAYLVSKAIKSAQVLGF 464

Query: 422 EDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWKKYIS 463
            DLGMEAIYEF+V++MPVTVA+DS G S+H  GPK+W++ I+
Sbjct: 465 ADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPKEWQEKIA 506

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|409405380|ref|ZP_11253842.1| fumarate hydratase [Herbaspirillum sp. GW103] gi|386433929|gb|EIJ46754.1| fumarate hydratase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedicae SmR1] gi|124483326|emb|CAM32536.1| Fumarate hydratase protein [Herbaspirillum seropedicae] gi|300073658|gb|ADJ63057.1| fumarate hydratase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|415942121|ref|ZP_11555849.1| Fumarate hydratase protein [Herbaspirillum frisingense GSF30] gi|407758908|gb|EKF68672.1| Fumarate hydratase protein [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|398835699|ref|ZP_10593058.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. YR522] gi|398215504|gb|EJN02066.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|399019450|ref|ZP_10721598.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. CF444] gi|398098060|gb|EJL88353.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|152980967|ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] gi|151281044|gb|ABR89454.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|134094155|ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] gi|133738058|emb|CAL61103.1| putative fumarate hydratase class I, aerobic (Fumarase) (FumA-like) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|395761117|ref|ZP_10441786.1| fumarate hydratase [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|427402993|ref|ZP_18893990.1| hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type [Massilia timonae CCUG 45783] gi|425718176|gb|EKU81127.1| hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type [Massilia timonae CCUG 45783] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TIGR_CMR|CPS_3613507 CPS_3613 "putative fumarate hy 0.972 0.901 0.574 2.9e-142
TIGR_CMR|SO_2222516 SO_2222 "fumarate hydratase, c 0.987 0.899 0.558 5.5e-141
UNIPROTKB|Q9KSF2505 VC1304 "Fumarate hydratase, cl 0.980 0.912 0.558 1.1e-140
TIGR_CMR|VC_1304505 VC_1304 "fumarate hydratase, c 0.980 0.912 0.558 1.1e-140
TIGR_CMR|SPO_1498502 SPO_1498 "fumarate hydratase, 0.974 0.912 0.498 8.9e-125
TIGR_CMR|CHY_1375280 CHY_1375 "fumarate hydratase, 0.508 0.853 0.428 1.8e-46
TIGR_CMR|DET_0453280 DET_0453 "fumarate hydratase, 0.5 0.839 0.403 1.3e-43
TIGR_CMR|CHY_0061281 CHY_0061 "fumarate hydratase, 0.510 0.854 0.421 1.5e-42
TIGR_CMR|GSU_0994541 GSU_0994 "fumarate hydratase, 0.921 0.800 0.308 1.9e-42
UNIPROTKB|P14407548 fumB [Escherichia coli K-12 (t 0.912 0.782 0.289 1.4e-39
TIGR_CMR|CPS_3613 CPS_3613 "putative fumarate hydratase, class I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 263/458 (57%), Positives = 338/458 (73%)

Query:     2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
             E+  AAKDAIAQILINSRM A+ KRPICQDTGIV  F+K+GM V++   + ++  +++EG
Sbjct:    39 EESTAAKDAIAQILINSRMSAQGKRPICQDTGIVTCFVKVGMEVQWDKTDMTVQQMVDEG 98

Query:    62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
              RR Y NP+N LRASIV DP   R NT+DNTPAV+++++VPG  L+I IA+KGGGSENKT
Sbjct:    99 TRRAYLNPDNPLRASIVKDPAGKRINTKDNTPAVVHIDMVPGAGLEIMIAAKGGGSENKT 158

Query:   122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
             K AMLNPSDS+ DW++KT+PTMGAGWCPP         T EKA ++AK+ LM  +N+  +
Sbjct:   159 KMAMLNPSDSIADWVVKTLPTMGAGWCPPGMLGIGIGGTAEKAGVLAKESLMDPVNIQDL 218

Query:   182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
             I+ GP+N  EELRLE+F ++N LGIGAQG+GGL+TV+DVKI   PTHAASKPV +IPNCA
Sbjct:   219 IERGPQNAEEELRLEIFERVNKLGIGAQGLGGLTTVVDVKINSVPTHAASKPVVMIPNCA 278

Query:   242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
             ATRH H  L+GSGP  + PP L  WP+I +    +    VN++ L K ++S W++GE +L
Sbjct:   279 ATRHVHFHLDGSGPADLTPPKLEEWPEITWEVG-ENVRRVNVDDLGKADISDWKTGETVL 337

Query:   302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRM 361
             L+G ILTGRDAAH RIQ ML+KGEK+PV+F ++ IYYVGP++ + +E +GPAGPTTA+RM
Sbjct:   338 LSGTILTGRDAAHKRIQDMLAKGEKLPVDFTDKFIYYVGPVDAIGDEAVGPAGPTTATRM 397

Query:   362 DHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXXCF 421
             D FT ++L + GL+  IGKAER              YL+AVGGAAYL            F
Sbjct:   398 DKFTEMMLAETGLLGTIGKAERGAQTCESIKNHKSVYLMAVGGAAYLVSKAIKKAKVVAF 457

Query:   422 EDLGMEAIYEFNVENMPVTVAIDSLGKSIHIDGPKKWK 459
             ED+GMEAIYEF VE+MPVTVA+DS G+S H+ GP+ WK
Sbjct:   458 EDMGMEAIYEFVVEDMPVTVAVDSTGESAHVTGPEIWK 495
GO:0004333 "fumarate hydratase activity" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
TIGR_CMR|SO_2222 SO_2222 "fumarate hydratase, class I, anaerobic, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSF2 VC1304 "Fumarate hydratase, class I, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1304 VC_1304 "fumarate hydratase, class I, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1498 SPO_1498 "fumarate hydratase, class I, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1375 CHY_1375 "fumarate hydratase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0453 DET_0453 "fumarate hydratase, alpha subunit, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0061 CHY_0061 "fumarate hydratase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0994 GSU_0994 "fumarate hydratase, class I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P14407 fumB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0AC34FUMA_ECOL64, ., 2, ., 1, ., 20.31560.90420.7755yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer4.2.1.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
pfam05681271 pfam05681, Fumerase, Fumarate hydratase (Fumerase) 1e-126
COG1951297 COG1951, TtdA, Tartrate dehydratase alpha subunit/ 1e-115
pfam05683205 pfam05683, Fumerase_C, Fumarase C-terminus 1e-107
PRK06246280 PRK06246, PRK06246, fumarate hydratase; Provisiona 6e-87
COG1838184 COG1838, FumA, Tartrate dehydratase beta subunit/F 7e-78
PTZ00226570 PTZ00226, PTZ00226, fumarate hydratase; Provisiona 2e-66
TIGR00722273 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type 1e-58
PRK06842185 PRK06842, PRK06842, fumarate hydratase; Provisiona 2e-57
PRK15389536 PRK15389, PRK15389, fumarate hydratase; Provisiona 7e-57
PLN00133576 PLN00133, PLN00133, class I-fumerate hydratase; Pr 3e-54
PRK15391548 PRK15391, PRK15391, fumarate hydratase FumB; Provi 2e-51
PRK15390548 PRK15390, PRK15390, fumarate hydratase FumA; Provi 1e-49
PRK15392550 PRK15392, PRK15392, putative fumarate hydratase; P 2e-48
TIGR00723168 TIGR00723, ttdB_fumA_fumB, hydro-lyases, Fe-S type 1e-45
PRK06043192 PRK06043, PRK06043, fumarate hydratase; Provisiona 1e-35
PRK08395162 PRK08395, PRK08395, fumarate hydratase; Provisiona 1e-28
PRK08230299 PRK08230, PRK08230, tartrate dehydratase subunit a 2e-23
PRK08228204 PRK08228, PRK08228, L(+)-tartrate dehydratase subu 2e-13
>gnl|CDD|218689 pfam05681, Fumerase, Fumarate hydratase (Fumerase) Back     alignment and domain information 
 Score =  368 bits (947), Expect = e-126
 Identities = 129/252 (51%), Positives = 166/252 (65%), Gaps = 14/252 (5%)

Query: 2   EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
           E+   AK  +AQIL N+ + A+ KRPICQDTG   VF+KIG  V      G + + INEG
Sbjct: 31  EESPLAKFVLAQILENAEIAAEGKRPICQDTGTAVVFVKIGQEVPI---EGDLEEAINEG 87

Query: 62  VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
           VRR YT     LR S+V+DP   RKNT DNTPAVI++E+VPG+ L+I +A+KGGGSENK+
Sbjct: 88  VRRAYTEGP--LRPSVVADP-LERKNTGDNTPAVIHIEIVPGDELEITVAAKGGGSENKS 144

Query: 122 KFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
           K AMLNPSD    +  ++++TV   G   CPPG++G+GIGGT EKA L+AKK L++ ++ 
Sbjct: 145 KLAMLNPSDGIEGIKKFVLETVKEAGPNACPPGVVGVGIGGTSEKAALLAKKALLRPVDE 204

Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
            +     P  +  EL  EL  KIN LGIG QG+GG +T LDVKI   P H AS PVA+  
Sbjct: 205 RN-----PDPRDAELEEELLEKINKLGIGPQGLGGKTTALDVKIERAPRHIASLPVAVNV 259

Query: 239 NCAATRHGHIIL 250
           NC A RH    +
Sbjct: 260 NCWADRHATAKI 271

This family consists of several bacterial fumarate hydratase proteins FumA and FumB. Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre. Length = 271
>gnl|CDD|224862 COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|218690 pfam05683, Fumerase_C, Fumarase C-terminus Back     alignment and domain information
>gnl|CDD|180486 PRK06246, PRK06246, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|224751 COG1838, FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|240319 PTZ00226, PTZ00226, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|233103 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region Back     alignment and domain information
>gnl|CDD|180724 PRK06842, PRK06842, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|237955 PRK15389, PRK15389, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|215068 PLN00133, PLN00133, class I-fumerate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|185289 PRK15391, PRK15391, fumarate hydratase FumB; Provisional Back     alignment and domain information
>gnl|CDD|185288 PRK15390, PRK15390, fumarate hydratase FumA; Provisional Back     alignment and domain information
>gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|129806 TIGR00723, ttdB_fumA_fumB, hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region Back     alignment and domain information
>gnl|CDD|180366 PRK06043, PRK06043, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|169425 PRK08395, PRK08395, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|181309 PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236192 PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
PRK15389536 fumarate hydratase; Provisional 100.0
PTZ00226570 fumarate hydratase; Provisional 100.0
PRK15390548 fumarate hydratase FumA; Provisional 100.0
PRK15392550 putative fumarate hydratase; Provisional 100.0
PLN00133576 class I-fumerate hydratase; Provisional 100.0
PRK15391548 fumarate hydratase FumB; Provisional 100.0
PRK08230299 tartrate dehydratase subunit alpha; Validated 100.0
PRK06246280 fumarate hydratase; Provisional 100.0
TIGR00722273 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/f 100.0
PF05681271 Fumerase: Fumarate hydratase (Fumerase); InterPro: 100.0
COG1951297 TtdA Tartrate dehydratase alpha subunit/Fumarate h 100.0
PRK06842185 fumarate hydratase; Provisional 100.0
PF05683205 Fumerase_C: Fumarase C-terminus; InterPro: IPR0046 100.0
PRK08228204 L(+)-tartrate dehydratase subunit beta; Validated 100.0
PRK06043192 fumarate hydratase; Provisional 100.0
COG1838184 FumA Tartrate dehydratase beta subunit/Fumarate hy 100.0
TIGR00723168 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/f 100.0
PRK08395162 fumarate hydratase; Provisional 100.0
>PRK15389 fumarate hydratase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-159  Score=1252.56  Aligned_cols=440  Identities=30%  Similarity=0.471  Sum_probs=421.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCCcCCCCCC
Q psy3766           1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD   80 (470)
Q Consensus         1 ~E~~~~ak~vl~~ileN~~iA~~~~~PlCQDTG~~~~fv~iG~~v~~~G~~~~l~~aI~egv~~a~~~~~~pLR~s~V~d   80 (470)
                      +|+||+||++|++||+|+++|+++++|+|||||+|+||+++|++|+ .|  ++|+++|++||++||+  ++|||+|+|+ 
T Consensus        76 ~E~s~~ak~vl~~ileN~~iA~~~~~P~CQDTG~~~vfv~iG~~v~-~g--~~l~~aI~eGV~~ay~--~~pLR~svV~-  149 (536)
T PRK15389         76 PEASDNDKFVALDLLKNANIAAGGVLPMCQDTGTAIIMGKKGQRVW-TG--GDDEEALSRGVYDTYT--ELNLRYSQNA-  149 (536)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhcC-
Confidence            4889999999999999999999999999999999999999999999 54  5799999999999999  8999999995 


Q ss_pred             CC--ccccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCc----chHHHHHHHHhhhcCCCCCCCCeeE
Q psy3766          81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPS----DSLVDWIMKTVPTMGAGWCPPGILG  154 (470)
Q Consensus        81 Pl--~~r~NtgdNtpavi~~~~v~gd~l~I~~~~KGgGsEn~s~~~ml~P~----~~i~~fV~d~V~~aG~~~CPP~ivG  154 (470)
                      |+  |+|+||+||||++||+++|+||+++|+++||||||||+|+++|++|+    +||++||+|+|.++|+|||||++||
T Consensus       150 pl~~~~r~Nt~dNtpa~I~~~~v~gD~l~I~v~~KGgGSEN~s~l~ml~pa~L~p~gI~~fVle~V~~aG~~~CPP~iVG  229 (536)
T PRK15389        150 PLDMYEEKNTGTNLPAQIDIYATEGDEYKFLFMAKGGGSANKTFLYQETKALLNPDRLLAFLVEKMRTLGTAACPPYHLA  229 (536)
T ss_pred             CCCcccccCCCCCcCcEEEEEEeCCCEEEEEEEecCCCccchhheeecccccCCHHHHHHHHHHHHHHcCCCCCCCceEE
Confidence            65  39999999999999999999999999999999999999999996665    5999999999999999999999999


Q ss_pred             EEEcCC-HHHHHHHHHHHhcccccccccccc----CCCh---hHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecC
Q psy3766         155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKN----GPKN---KIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP  226 (470)
Q Consensus       155 VGIGGt-~d~aa~LaK~AllR~~g~~~~~~~----~~~p---~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p  226 (470)
                      |||||| +|+|++|||+||+|++|     ++    ||+|   ++|+||+||||+||+|||||| |||+||||+|||+++|
T Consensus       230 VGIGGt~~e~aa~LAK~AllR~~~-----~~~~~~~~~p~~~~~a~lE~eLle~IN~lGIGp~-lGG~tTaL~V~Ie~~p  303 (536)
T PRK15389        230 IVIGGTSAEANLKTVKLASAKYLD-----ALPTEGNEHGHAFRDLELEQEVLKLTQKLGIGAQ-FGGKYFCHDVRVIRLP  303 (536)
T ss_pred             EEeCCCHHHHHHHHHHHHhhCccC-----CccccCCCcccchHHHHHHHHHHHHHHhhCcCcc-cCCCeEEEEEEEeecC
Confidence            999999 99999999999999999     77    7888   999999999999999999999 9999999999999999


Q ss_pred             cccccCcEEEeecccccceeEEEEeCCCcee--cCCCCCCCCcccccccCCC--ceEEEEcCCCCH--HHHhcCCCCCEE
Q psy3766         227 THAASKPVAIIPNCAATRHGHIILNGSGPVF--MKPPSLSNWPKIKFTTNNK--KFHYVNLNTLTK--KEVSSWRSGEIL  300 (470)
Q Consensus       227 ~H~As~PVaV~~~C~a~Rra~~~i~~~g~~~--~~~~~~~~~~~~~~~~~~~--~~~~i~~~P~s~--e~i~~L~vGD~V  300 (470)
                      ||+||+|||||+||||+||++++|++||++.  +.+|+.++||++.++...+  +.++|++ |+++  +++++|++||+|
T Consensus       304 ~H~AslPVAVni~C~a~R~~~~~i~~dg~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~L~t-Pl~~~~~~i~~L~vGD~V  382 (536)
T PRK15389        304 RHGASCPVGIGVSCSADRNIKAKITRDGIFLEQLETNPARYLPEVLREKLEGEVVKIDLNR-PMAEILAELSKYPVKTRL  382 (536)
T ss_pred             CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCChHhChhhhhhccCCceEEEEecC-CCchhHHHHhhCCCCCEE
Confidence            9999999999999999999999999999998  9999999999999886633  4455565 9987  799999999999


Q ss_pred             EEEEEEEEeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCceeeeccccccccchhhHHHHHHHhCcEEEEec
Q psy3766         301 LLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGK  380 (470)
Q Consensus       301 ~LsG~i~taRDaah~ri~e~l~~ge~lP~dl~g~~I~h~GP~~~~~g~~igs~GPTTS~Rmd~~~~~ll~~~Gv~~~IGK  380 (470)
                      ||||+|||+||+||+||++++++|++||+||+|++||||||+++++|+.+||+|||||+|||+|+|.|++++|+++||||
T Consensus       383 ~LsG~i~taRDaaHkrl~e~~~~G~~lP~dl~g~~Iyh~GP~~~~~g~~igs~GPTTS~RMd~~~~~ll~~~G~~~~IGK  462 (536)
T PRK15389        383 SLTGTIIVARDIAHAKLKERLDAGEGLPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQAAGGSMVMLAK  462 (536)
T ss_pred             EEEEEEEEEehHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCCCCCceeeeeCCchHHHhhhhHHHHHHhcCcEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             ccCCHHHHHHHHhcCEEEEEccchHHHHHH-hhceeeeeeeccCCCcceEEEEEEecccEEEEEcCCCCccccc
Q psy3766         381 AERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVTVAIDSLGKSIHID  453 (470)
Q Consensus       381 G~~~~~~~~a~k~~gavYl~~~GGaaal~~-~~Ik~v~~v~~~dLG~EAi~~leVedfPl~V~iDs~G~~ly~~  453 (470)
                      |+||++++++||+||+|||+++|||||+++ ++||++++|+|+||||||+|+|+|+|||+||+||+||||||++
T Consensus       463 G~~~~~~~ea~k~~gavYl~~~GG~aA~l~a~~Ik~v~~V~~~dLG~EAi~~leV~dfP~iV~iD~~Gn~ly~~  536 (536)
T PRK15389        463 GNRSQQVTDACKKHGGFYLGSIGGPAARLAQDCIKKVEVLEYPELGMEAVWKIEVEDFPAFILVDDKGNDFFKE  536 (536)
T ss_pred             CCCCHHHHHHHHHcCEEEEEcCcHHHHHHHHhhccEEEEeeccccCccEEEEEEEecCCeEEEEeCCCcccccC
Confidence            999999999999999999999999999776 9999999999999999999999999999999999999999974

>PTZ00226 fumarate hydratase; Provisional Back     alignment and domain information
>PRK15390 fumarate hydratase FumA; Provisional Back     alignment and domain information
>PRK15392 putative fumarate hydratase; Provisional Back     alignment and domain information
>PLN00133 class I-fumerate hydratase; Provisional Back     alignment and domain information
>PRK15391 fumarate hydratase FumB; Provisional Back     alignment and domain information
>PRK08230 tartrate dehydratase subunit alpha; Validated Back     alignment and domain information
>PRK06246 fumarate hydratase; Provisional Back     alignment and domain information
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region Back     alignment and domain information
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4 Back     alignment and domain information
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion] Back     alignment and domain information
>PRK06842 fumarate hydratase; Provisional Back     alignment and domain information
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4 Back     alignment and domain information
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated Back     alignment and domain information
>PRK06043 fumarate hydratase; Provisional Back     alignment and domain information
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion] Back     alignment and domain information
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region Back     alignment and domain information
>PRK08395 fumarate hydratase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
2isb_A192 Crystal Structure Of Fumarase Of Fum-1 (Np_069927.1 2e-13
>pdb|2ISB|A Chain A, Crystal Structure Of Fumarase Of Fum-1 (Np_069927.1) From Archaeoglobus Fulgidus At 1.66 A Resolution Length = 192 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 4/169 (2%)
Query: 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV 345
           L K ++   + G+++ + G+I T RD AH R      +G+++P +F+  V+Y+ GP+   
Sbjct: 23  LVKDQILKLKVGDVVYITGEIFTARDEAHARALEWXEEGKELPFSFDKGVVYHCGPLVKK 82
Query: 346 RNEV-IGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGG 404
            +E  +  AGPTT++R + FT  ILEK+    +IGK   S+           AY    GG
Sbjct: 83  NDEWRVVSAGPTTSARXNPFTPKILEKVECXGIIGKGGXSE-EVVEAXRGKAAYFAFTGG 141
Query: 405 AAYLXXXXXXXXXXXCFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSIH 451
           A  L            +EDLG  EA++   VE   P  VAID+ G S++
Sbjct: 142 AGALAAXSIKKVKGVVWEDLGXPEAVWLLEVERFGPCIVAIDAHGNSLY 190
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
2isb_A192 Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, s 5e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1 Length = 192 Back     alignment and structure
 Score =  199 bits (507), Expect = 5e-62
 Identities = 64/175 (36%), Positives = 106/175 (60%), Gaps = 5/175 (2%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 17  YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 76

Query: 340 GPINPVRNE-VIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 77  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 135

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSIH 451
               GGA  L + +IK  K + +EDLGM EA++   VE   P  VAID+ G S++
Sbjct: 136 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLY 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
2isb_A192 Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, s 100.0
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1 Back     alignment and structure
Probab=100.00  E-value=6.5e-71  Score=517.07  Aligned_cols=172  Identities=35%  Similarity=0.616  Sum_probs=167.7

Q ss_pred             EEEEcCCCCHHHHhcCCCCCEEEEEEEEEEeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCC-ceeeeccccc
Q psy3766         279 HYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN-EVIGPAGPTT  357 (470)
Q Consensus       279 ~~i~~~P~s~e~i~~L~vGD~V~LsG~i~taRDaah~ri~e~l~~ge~lP~dl~g~~I~h~GP~~~~~g-~~igs~GPTT  357 (470)
                      +++++ |+++|++++|++||+|||||+|||+||+||+||+|+|++|++||+||+|++||||||++++++ +++||+||||
T Consensus        17 ~~l~~-Plt~e~v~~L~vGD~V~LsG~i~taRDaAHkRl~e~l~~Ge~lP~dl~g~~Iyy~GP~~~k~~~~~igs~GPTT   95 (192)
T 2isb_A           17 YELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPTT   95 (192)
T ss_dssp             EEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBCB
T ss_pred             EEeCC-CCCHHHHhhCCCCCEEEEEEEEEEEhHHHHHHHHHHHHcCCCCCcCCCCCEEEEecCCCCCCCCcEeeEECCCc
Confidence            66888 999999999999999999999999999999999999999999999999999999999976655 8999999999


Q ss_pred             cccchhhHHHHHHHhCcEEEEecccCCHHHHHHHHhcCEEEEEccchHHHHHHhhceeeeeeeccCCCc-ceEEEEEEec
Q psy3766         358 ASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVEN  436 (470)
Q Consensus       358 S~Rmd~~~~~ll~~~Gv~~~IGKG~~~~~~~~a~k~~gavYl~~~GGaaal~~~~Ik~v~~v~~~dLG~-EAi~~leVed  436 (470)
                      |+|||+|+|.|++++|+++|||||+||+++++|||+| +|||+++||||||++++||++++|+|+|||| ||||+|+|||
T Consensus        96 S~RMd~y~~~ll~~~G~~~mIGKG~r~~~v~~a~k~~-avYl~avGGaaalla~~Ik~v~~v~~~dLGMpEAi~~leVed  174 (192)
T 2isb_A           96 SARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGK-AAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVER  174 (192)
T ss_dssp             GGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHTTT-EEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEEE
T ss_pred             hhhhhhhHHHHHHhCCcEEEEECCCCCHHHHHHHHhC-eEEEEcCcHHHHHHHhheeEEEEEeeccCCCccEEEEEEEEe
Confidence            9999999999999889999999999999999999999 9999999999999999999999999999997 9999999999


Q ss_pred             c-cEEEEEcCCCCcccc
Q psy3766         437 M-PVTVAIDSLGKSIHI  452 (470)
Q Consensus       437 f-Pl~V~iDs~G~~ly~  452 (470)
                      | |+||+||+||||||+
T Consensus       175 fGP~iV~iD~~Gn~ly~  191 (192)
T 2isb_A          175 FGPCIVAIDAHGNSLYR  191 (192)
T ss_dssp             EEEEEEEECTTSCBTTC
T ss_pred             eeeEEEEEeCCCccccc
Confidence            9 999999999999997

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d2isba1178 c.8.9.1 (A:2-179) Fumarate hydratase class I beta 5e-59
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]} Length = 178 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: FumA C-terminal domain-like
family: FumA C-terminal domain-like
domain: Fumarate hydratase class I beta subunit
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  189 bits (483), Expect = 5e-59
 Identities = 64/175 (36%), Positives = 106/175 (60%), Gaps = 5/175 (2%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 4   YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 63

Query: 340 GPINPVRNEV-IGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 64  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 122

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVTVAIDSLGKSIH 451
               GGA  L + +IK  K + +EDLGM EA++   VE   P  VAID+ G S++
Sbjct: 123 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCIVAIDAHGNSLY 177

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d2isba1178 Fumarate hydratase class I beta subunit {Archaeogl 100.0
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: FumA C-terminal domain-like
family: FumA C-terminal domain-like
domain: Fumarate hydratase class I beta subunit
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.7e-70  Score=504.10  Aligned_cols=173  Identities=35%  Similarity=0.608  Sum_probs=166.0

Q ss_pred             eEEEEcCCCCHHHHhcCCCCCEEEEEEEEEEeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCC-ceeeecccc
Q psy3766         278 FHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN-EVIGPAGPT  356 (470)
Q Consensus       278 ~~~i~~~P~s~e~i~~L~vGD~V~LsG~i~taRDaah~ri~e~l~~ge~lP~dl~g~~I~h~GP~~~~~g-~~igs~GPT  356 (470)
                      .++|++ |+++|++++|++||+|||||+|||+||+||+||+|++++|++||+||+|++||||||++++++ ..++|+|||
T Consensus         3 ~~~L~t-Plt~e~i~~L~vGD~V~LsG~i~taRD~AHkrl~e~l~~g~~lP~dl~g~~iyy~GP~~~~~~~~~~gs~GPT   81 (178)
T d2isba1           3 EYELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPT   81 (178)
T ss_dssp             EEEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBC
T ss_pred             eEEcCC-CCCHHHHhhCCCCCEEEEeeEEEEEhHHHHHHHHHHHHcCCCCCcchhcCeEEEecCCCCCCCCeeeeecCCc
Confidence            367999 999999999999999999999999999999999999999999999999999999999886664 569999999


Q ss_pred             ccccchhhHHHHHHHhCcEEEEecccCCHHHHHHHHhcCEEEEEccchHHHHHHhhceeeeeeeccCCCc-ceEEEEEEe
Q psy3766         357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE  435 (470)
Q Consensus       357 TS~Rmd~~~~~ll~~~Gv~~~IGKG~~~~~~~~a~k~~gavYl~~~GGaaal~~~~Ik~v~~v~~~dLG~-EAi~~leVe  435 (470)
                      ||+|||+|+|+||+++|+++|||||+||++++++|| +++|||+++||||||++++||++++|+|+|||| ||+|+|+||
T Consensus        82 TS~RMd~y~~~~l~~~G~~~~IGKG~rs~~v~~a~k-~~~vYl~~~GGaaaLl~~~Ik~v~~v~~~dLGmpEAi~~leVe  160 (178)
T d2isba1          82 TSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMR-GKAAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVE  160 (178)
T ss_dssp             BGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHT-TTEEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhhCeEEEEeeccCChhHHHHHh-cCcEEEEeCcHHHHHHHhhccEEEEEecccCCCcceEEEEEEe
Confidence            999999999999998999999999999999999996 578999999999999999999999999999997 999999999


Q ss_pred             cc-cEEEEEcCCCCcccc
Q psy3766         436 NM-PVTVAIDSLGKSIHI  452 (470)
Q Consensus       436 df-Pl~V~iDs~G~~ly~  452 (470)
                      || |++|+||+||||||+
T Consensus       161 dFgP~iV~iD~~Gn~lyk  178 (178)
T d2isba1         161 RFGPCIVAIDAHGNSLYR  178 (178)
T ss_dssp             EEEEEEEEECTTSCBTTC
T ss_pred             eccceEEEEECCCCcccC
Confidence            99 999999999999995