Psyllid ID: psy3777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccEEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEccccccccEEEEEEEcEEcEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEccccEEEEcccccccccEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
MNLIQKIEQEEIIRLKknipdfvtgdtIIVNLNVIEGTRKRIQAYEGIVISRrnkglnsnFIVRKISynegiertfQLYSPIISSIIVkrrgdrnayii
Flexible Loop (DISEMBL)
MNLIQKIEQEEIIRlkknipdfvtgdTIIVNLNVIEGTRKRIQAYEGIvisrrnkglnsnfIVRKISYnegiertfqlyspiissiivkrrgdrnayii
Low Complexity Region (SEG)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Disordered region (IsUnstruct)
*********EEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRR********
Disordered Region (DISOPRED)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Disordered Region (DISEMBL)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Disordered Region (DISPRO)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGDRNAYII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
A4G2T8	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.795	2e-38
A2SES9	117	50S ribosomal protein L19	yes	N/A	0.939	0.794	0.731	2e-35
A1WG50	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.731	3e-35
A1WB49	127	50S ribosomal protein L19	yes	N/A	0.939	0.732	0.731	4e-35
B9ME96	127	50S ribosomal protein L19	yes	N/A	0.939	0.732	0.731	4e-35
A6SVI7	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.784	9e-35
B1Y0H8	117	50S ribosomal protein L19	yes	N/A	0.939	0.794	0.731	1e-34
B2U8L3	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.726	1e-34
A1TND3	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.709	2e-34
Q13VF1	128	50S ribosomal protein L19	yes	N/A	0.939	0.726	0.694	2e-34

>sp|A4G2T8|RL19_HERAR 50S ribosomal protein L19 OS=Herminiimonas arsenicoxydans GN=rplS PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ +EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
Herminiimonas arsenicoxydans (taxid: 204773)

>sp|A2SES9|RL19_METPP 50S ribosomal protein L19 OS=Methylibium petroleiphilum (strain PM1) GN=rplS PE=3 SV=1

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 83/93 (89%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ +EQEEI RL K IP F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLNS+
Sbjct: 1  MDLIQTLEQEEIARLNKTIPAFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSS 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Methylibium petroleiphilum (strain PM1) (taxid: 420662)

>sp|A1WG50|RL19_VEREI 50S ribosomal protein L19 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rplS PE=3 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 81/93 (87%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ +E EEI RL K IPDF  GDT+IVN+NV+EG+RKR+QAYEG+VI++RN+GLNS 
Sbjct: 1  MNLIQTLEAEEIARLNKTIPDFSAGDTVIVNVNVVEGSRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQ YSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQTYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)

>sp|A1WB49|RL19_ACISJ 50S ribosomal protein L19 OS=Acidovorax sp. (strain JS42) GN=rplS PE=3 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 80/93 (86%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ +EQEEI RL K IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLNS 
Sbjct: 1  MNLIQILEQEEIARLNKTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS  EG+ERTFQ YSP+I+SI VKRRGD
Sbjct: 61 FTVRKISSGEGVERTFQTYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidovorax sp. (strain JS42) (taxid: 232721)

>sp|B9ME96|RL19_ACIET 50S ribosomal protein L19 OS=Acidovorax ebreus (strain TPSY) GN=rplS PE=3 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 80/93 (86%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ +EQEEI RL K IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLNS 
Sbjct: 1  MNLIQILEQEEIARLNKTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS  EG+ERTFQ YSP+I+SI VKRRGD
Sbjct: 61 FTVRKISSGEGVERTFQTYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidovorax ebreus (strain TPSY) (taxid: 535289)

>sp|A6SVI7|RL19_JANMA 50S ribosomal protein L19 OS=Janthinobacterium sp. (strain Marseille) GN=rplS PE=3 SV=1

 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL KNIPDF  GDT++VN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLAKNIPDFAPGDTVVVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|B1Y0H8|RL19_LEPCP 50S ribosomal protein L19 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplS PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL K IP F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLNS+
Sbjct: 1  MDLIQQLEQEEIARLNKVIPVFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSS 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (taxid: 395495)

>sp|B2U8L3|RL19_RALPJ 50S ribosomal protein L19 OS=Ralstonia pickettii (strain 12J) GN=rplS PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 84/95 (88%), Gaps = 2/95 (2%)

Query: 1  MNLIQKIEQEEIIRLKKN--IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
          MNLI++IEQEEI RL  N  IP F  GDT+IVN+NV+EGTRKR+QAYEG+VI++RN+GLN
Sbjct: 1  MNLIEQIEQEEIKRLTANKTIPPFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLN 60

Query: 59 SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          S+FIVRKIS  EG+ERTFQLYSP+++SI VKRRGD
Sbjct: 61 SSFIVRKISSGEGVERTFQLYSPLLASIEVKRRGD 95

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|A1TND3|RL19_ACIAC 50S ribosomal protein L19 OS=Acidovorax citrulli (strain AAC00-1) GN=rplS PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ +EQEEI RL K IP+F  GDT+IV++NV+EG RKR+QAYEG+VI++RN+GLNS 
Sbjct: 1  MNLIQTLEQEEIARLNKTIPEFAPGDTVIVSVNVVEGNRKRVQAYEGVVIAKRNRGLNSG 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS  EG+ERTFQ YSP+I+SI VKRRGD
Sbjct: 61 FTVRKISSGEGVERTFQTYSPLIASIEVKRRGD 93

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidovorax citrulli (strain AAC00-1) (taxid: 397945)

>sp|Q13VF1|RL19_BURXL 50S ribosomal protein L19 OS=Burkholderia xenovorans (strain LB400) GN=rplS PE=3 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 84/95 (88%), Gaps = 2/95 (2%)

Query: 1  MNLIQKIEQEEIIRL--KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
          MNLI K+EQEEI R   +K IP+F  GDT+IV++NV+EGTRKR+QAYEG+VI++RN+GLN
Sbjct: 1  MNLIAKLEQEEIARALGEKTIPEFAPGDTVIVSVNVVEGTRKRVQAYEGVVIAKRNRGLN 60

Query: 59 SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          S+FIVRKIS  EG+ERTFQ YSP+++SI+VKRRGD
Sbjct: 61 SSFIVRKISSGEGVERTFQTYSPLLASIVVKRRGD 95

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
134093877	128	50S ribosomal protein L19 [Herminiimonas	0.939	0.726	0.795	8e-37
445495374	128	50S ribosomal protein L19 [Janthinobacte	0.939	0.726	0.795	8e-37
300310840	127	50S ribosomal protein L19 [Herbaspirillu	0.939	0.732	0.784	2e-36
399019425	127	ribosomal protein L19 [Herbaspirillum sp	0.939	0.732	0.784	3e-36
415947047	127	50S ribosomal protein L19 [Herbaspirillu	0.939	0.732	0.774	4e-36
329902142	128	LSU ribosomal protein L19p [Oxalobactera	0.939	0.726	0.774	6e-36
398835670	130	ribosomal protein L19 [Herbaspirillum sp	0.939	0.715	0.774	3e-35
395761198	127	50S ribosomal protein L19 [Janthinobacte	0.939	0.732	0.763	3e-35
334131669	126	50S ribosomal subunit protein L19 [Methy	0.939	0.738	0.752	5e-35
237748990	131	large subunit ribosomal protein L19 [Oxa	0.939	0.709	0.752	5e-34

>gi|134093877|ref|YP_001098952.1| 50S ribosomal protein L19 [Herminiimonas arsenicoxydans] gi|166199551|sp|A4G2T8.1|RL19_HERAR RecName: Full=50S ribosomal protein L19 gi|133737780|emb|CAL60825.1| 50S ribosomal subunit protein L19 [Herminiimonas arsenicoxydans]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ +EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445495374|ref|ZP_21462418.1| 50S ribosomal protein L19 [Janthinobacterium sp. HH01] gi|444791535|gb|ELX13082.1| 50S ribosomal protein L19 [Janthinobacterium sp. HH01]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ++EQEEI RL K+IPDF  GDT+IVN+NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MNLIQQLEQEEIARLGKSIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300310840|ref|YP_003774932.1| 50S ribosomal protein L19 [Herbaspirillum seropedicae SmR1] gi|409405345|ref|ZP_11253807.1| 50S ribosomal protein L19 [Herbaspirillum sp. GW103] gi|300073625|gb|ADJ63024.1| 50S ribosomal subunit protein L19 [Herbaspirillum seropedicae SmR1] gi|386433894|gb|EIJ46719.1| 50S ribosomal protein L19 [Herbaspirillum sp. GW103]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL KNIPDF  GDT+IVN+NV+EGTRKR QAYEG+VI+RRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399019425|ref|ZP_10721573.1| ribosomal protein L19 [Herbaspirillum sp. CF444] gi|398098035|gb|EJL88328.1| ribosomal protein L19 [Herbaspirillum sp. CF444]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL KNIPDF  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQQLEQEEISRLAKNIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415947047|ref|ZP_11556549.1| 50S ribosomal protein L19 [Herbaspirillum frisingense GSF30] gi|407758134|gb|EKF68005.1| 50S ribosomal protein L19 [Herbaspirillum frisingense GSF30]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL KNIPDF  GDT+IV++NV+EGTRKR QAYEG+VI+RRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329902142|ref|ZP_08273046.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480] gi|327548865|gb|EGF33493.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 85/93 (91%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL K+IPDF  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLGKSIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398835670|ref|ZP_10593029.1| ribosomal protein L19 [Herbaspirillum sp. YR522] gi|398215475|gb|EJN02037.1| ribosomal protein L19 [Herbaspirillum sp. YR522]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL KNIP F  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLNKNIPAFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395761198|ref|ZP_10441867.1| 50S ribosomal protein L19 [Janthinobacterium lividum PAMC 25724]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          M+LIQ++EQEEI RL K IP+F  GDT+IV++NV+EGTRKR QAYEG+VISRRN+GLNSN
Sbjct: 1  MDLIQQLEQEEIARLGKTIPEFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 93

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|334131669|ref|ZP_08505431.1| 50S ribosomal subunit protein L19 [Methyloversatilis universalis FAM5] gi|333443142|gb|EGK71107.1| 50S ribosomal subunit protein L19 [Methyloversatilis universalis FAM5]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 84/93 (90%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ++EQEEI RL KNIP+F  GDT+IVN+NV+EG RKR+QAYEG+VI++RN+GLNSN
Sbjct: 1  MNLIQQLEQEEIARLGKNIPEFAPGDTVIVNVNVVEGDRKRVQAYEGVVIAKRNRGLNSN 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQ YSP+I+SI VKRRGD
Sbjct: 61 FIVRKISSGEGVERTFQTYSPLIASIEVKRRGD 93

Source: Methyloversatilis universalis FAM5

Species: Methyloversatilis universalis

Genus: Methyloversatilis

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237748990|ref|ZP_04579470.1| large subunit ribosomal protein L19 [Oxalobacter formigenes OXCC13] gi|229380352|gb|EEO30443.1| large subunit ribosomal protein L19 [Oxalobacter formigenes OXCC13]

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 83/93 (89%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLIQ++E+EEI RL K+IPDF  GDT+IV++ V+EG RKR QAYEG+VISRRN+GLNSN
Sbjct: 7  MNLIQQLEKEEIERLGKSIPDFAPGDTVIVSVMVVEGNRKRAQAYEGVVISRRNRGLNSN 66

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          FIVRKIS  EG+ERTFQLYSP+I+SI VKRRGD
Sbjct: 67 FIVRKISSGEGVERTFQLYSPLIASIEVKRRGD 99

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.909	0.782	0.586	2.6e-24
UNIPROTKB|Q9KUF7	117	rplS "50S ribosomal protein L1	0.888	0.752	0.560	6.1e-23
TIGR_CMR|VC_0564	117	VC_0564 "ribosomal protein L19	0.888	0.752	0.560	6.1e-23
UNIPROTKB|P0A7K6	115	rplS "50S ribosomal subunit pr	0.888	0.765	0.538	2.6e-22
TIGR_CMR|SPO_3257	127	SPO_3257 "ribosomal protein L1	0.929	0.724	0.569	1.5e-21
TIGR_CMR|SO_1360	117	SO_1360 "ribosomal protein L19	0.909	0.769	0.532	2.4e-21
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.898	0.787	0.510	5.7e-20
TIGR_CMR|CPS_4066	117	CPS_4066 "ribosomal protein L1	0.888	0.752	0.483	1.9e-19
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.898	0.754	0.483	8.3e-19
TIGR_CMR|BA_3978	114	BA_3978 "ribosomal protein L19	0.797	0.692	0.531	3.6e-18

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 54/92 (58%), Positives = 72/92 (78%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+IQ +E E+     K IPDF  GDT+ V + V EG R+R+QA+EG+VI+RR++GLNS+F
Sbjct:     3 NIIQLLETEQT--QGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSF 60

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
              VRK+S+ EG+ER FQLYSP+I+SI V RRGD
Sbjct:    61 TVRKVSHGEGVERVFQLYSPLIASIKVNRRGD 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|Q9KUF7 rplS "50S ribosomal protein L19" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/91 (56%), Positives = 72/91 (79%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+ +EQE+   +K+++P F  GDT++V + V EG R+R+QA+EGIVI+ RN+GL+S F
Sbjct:     3 NIIKALEQEQ---MKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
              VRKIS  EG+ERTFQ +SP++ SI VKRRG
Sbjct:    60 TVRKISNGEGVERTFQTHSPVVDSIEVKRRG 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0564 VC_0564 "ribosomal protein L19" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/91 (56%), Positives = 72/91 (79%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+ +EQE+   +K+++P F  GDT++V + V EG R+R+QA+EGIVI+ RN+GL+S F
Sbjct:     3 NIIKALEQEQ---MKQDLPQFAPGDTVVVQVKVKEGDRERLQAFEGIVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
              VRKIS  EG+ERTFQ +SP++ SI VKRRG
Sbjct:    60 TVRKISNGEGVERTFQTHSPVVDSIEVKRRG 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7K6 rplS "50S ribosomal subunit protein L19" [Escherichia coli K-12 (taxid:83333)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 49/91 (53%), Positives = 73/91 (80%)

Query:     2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
             N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct:     3 NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 59

Query:    62 IVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
              VRKIS  EG+ER FQ +SP++ SI VKRRG
Sbjct:    60 TVRKISNGEGVERVFQTHSPVVDSISVKRRG 90

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

TIGR_CMR|SPO_3257 SPO_3257 "ribosomal protein L19" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 53/93 (56%), Positives = 65/93 (69%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRN-KGLNS 59
             M+LI ++E E+I  L K+IPDF  GDTI V   V EGTR R+Q YEG+ ISR+N  G+  
Sbjct:     1 MDLIAQLEAEQIAALGKDIPDFKAGDTIRVGYKVTEGTRSRVQNYEGVCISRKNGSGIAG 60

Query:    60 NFIVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
             +F VRKIS+ EG+ER F LYS  I SI V RRG
Sbjct:    61 SFTVRKISFGEGVERVFPLYSTNIDSITVVRRG 93

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|SO_1360 SO_1360 "ribosomal protein L19" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 49/92 (53%), Positives = 72/92 (78%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             MN I K+  +E  ++K+++P F  GDT++V + V EG ++R+QA+EG+VI++RN+GL+S 
Sbjct:     1 MNNIIKMLNDE--QMKQDVPAFGAGDTVVVQVRVKEGDKERLQAFEGVVIAKRNRGLHSA 58

Query:    61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
             F VRKIS  EG+ER FQ +SP+I+SI VKRRG
Sbjct:    59 FTVRKISNGEGVERAFQTHSPLIASIEVKRRG 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 47/92 (51%), Positives = 67/92 (72%)

Query:     1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
             M+L++ +E+E+   L+K++P+F  GDT+ V   VIEG R+RIQ YEG+VI +R  GL++ 
Sbjct:     1 MDLLKSLEEEQ---LRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSAT 57

Query:    61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
             F VR++SY  G+ERTF L+SP I  I V RRG
Sbjct:    58 FTVRRVSYGIGVERTFPLHSPRIEKIEVIRRG 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_4066 CPS_4066 "ribosomal protein L19" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 44/91 (48%), Positives = 67/91 (73%)

Query:     3 LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
             +++ +EQE+   +K ++P F  GDT++V + V E  + R+QA+EG+VI+ +++GL+S F 
Sbjct:     4 ILEMLEQEQ---MKTDLPAFAPGDTVVVQVKVTEADKSRLQAFEGVVIAVKSRGLHSAFT 60

Query:    63 VRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
             VRKIS   G+ER FQ +SPI+ SI VKRRGD
Sbjct:    61 VRKISNGVGVERVFQTHSPIVDSIEVKRRGD 91

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query:     4 IQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIV 63
             + KI+  E+ ++KKNIP F  GDT+ V++ ++EG + RIQA++G+ ISR+N G+  +F V
Sbjct:     1 MNKIDAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTV 60

Query:    64 RKISYNEGIERTFQLYSPIISSIIVKRRG 92
             RKIS N G+ER F L+SP + +I V  RG
Sbjct:    61 RKISNNIGVERVFPLHSPTVDAIEVITRG 89

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_3978 BA_3978 "ribosomal protein L19" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 42/79 (53%), Positives = 59/79 (74%)

Query:    14 RLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIE 73
             +LK ++P F  GDT+ V++ V+EGTR+RIQ +EG+VI RR  G++  F VRKISY  G+E
Sbjct:    12 QLKTDLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETFTVRKISYGVGVE 71

Query:    74 RTFQLYSPIISSIIVKRRG 92
             RTF +++P I+ I V RRG
Sbjct:    72 RTFPVHTPRIAKIEVLRRG 90

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3NC04	RL19_BURP6	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
B4EAN3	RL19_BURCJ	No assigned EC number	0.7157	0.9393	0.7153	yes	N/A
C1DBG1	RL19_LARHH	No assigned EC number	0.6666	0.9393	0.7560	yes	N/A
Q5NXM4	RL19_AROAE	No assigned EC number	0.6947	0.9393	0.7265	yes	N/A
B1JXU6	RL19_BURCC	No assigned EC number	0.7157	0.9393	0.7153	yes	N/A
Q7NRV7	RL19_CHRVO	No assigned EC number	0.6344	0.9393	0.7622	yes	N/A
Q2L2Q1	RL19_BORA1	No assigned EC number	0.6736	0.9393	0.7209	yes	N/A
Q12CW3	RL19_POLSJ	No assigned EC number	0.6881	0.9393	0.7685	yes	N/A
Q2SXZ8	RL19_BURTA	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
Q1BY01	RL19_BURCA	No assigned EC number	0.7157	0.9393	0.7153	yes	N/A
B2T604	RL19_BURPP	No assigned EC number	0.6842	0.9393	0.7209	yes	N/A
B2U8L3	RL19_RALPJ	No assigned EC number	0.7263	0.9393	0.7265	yes	N/A
Q13VF1	RL19_BURXL	No assigned EC number	0.6947	0.9393	0.7265	yes	N/A
A1TND3	RL19_ACIAC	No assigned EC number	0.7096	0.9393	0.7265	yes	N/A
Q0AIV2	RL19_NITEC	No assigned EC number	0.6739	0.9292	0.7131	yes	N/A
B1YV60	RL19_BURA4	No assigned EC number	0.7052	0.9393	0.7153	yes	N/A
A1K9L2	RL19_AZOSB	No assigned EC number	0.6526	0.9393	0.7265	yes	N/A
Q63S33	RL19_BURPS	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
Q3SGC1	RL19_THIDA	No assigned EC number	0.6344	0.9393	0.7380	yes	N/A
A2SES9	RL19_METPP	No assigned EC number	0.7311	0.9393	0.7948	yes	N/A
A6SVI7	RL19_JANMA	No assigned EC number	0.7849	0.9393	0.7265	yes	N/A
A1WG50	RL19_VEREI	No assigned EC number	0.7311	0.9393	0.7265	yes	N/A
B1Y0H8	RL19_LEPCP	No assigned EC number	0.7311	0.9393	0.7948	yes	N/A
A0K5P8	RL19_BURCH	No assigned EC number	0.7157	0.9393	0.7153	yes	N/A
A9M2D0	RL19_NEIM0	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
B4RIW2	RL19_NEIG2	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
Q5FA60	RL19_NEIG1	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
Q9K0K5	RL19_NEIMB	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
A1VMA0	RL19_POLNA	No assigned EC number	0.6881	0.9393	0.7153	yes	N/A
A4G2T8	RL19_HERAR	No assigned EC number	0.7956	0.9393	0.7265	yes	N/A
A2S4N7	RL19_BURM9	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
A4SW76	RL19_POLSQ	No assigned EC number	0.6842	0.9393	0.7209	yes	N/A
B2JF32	RL19_BURP8	No assigned EC number	0.6842	0.9393	0.7322	yes	N/A
A3NXU0	RL19_BURP0	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
Q47BI8	RL19_DECAR	No assigned EC number	0.6559	0.9393	0.7380	yes	N/A
Q39ID3	RL19_BURS3	No assigned EC number	0.6947	0.9393	0.7153	yes	N/A
A4JCK0	RL19_BURVG	No assigned EC number	0.7052	0.9393	0.7153	yes	N/A
Q0BH66	RL19_BURCM	No assigned EC number	0.7157	0.9393	0.7153	yes	N/A
A1WB49	RL19_ACISJ	No assigned EC number	0.7311	0.9393	0.7322	yes	N/A
A1V6J1	RL19_BURMS	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
A3MHS0	RL19_BURM7	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
B9ME96	RL19_ACIET	No assigned EC number	0.7311	0.9393	0.7322	yes	N/A
Q62M53	RL19_BURMA	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
A9ADS8	RL19_BURM1	No assigned EC number	0.6947	0.9393	0.7153	yes	N/A
Q3JQ09	RL19_BURP1	No assigned EC number	0.6947	0.9393	0.7209	yes	N/A
Q8Y0V7	RL19_RALSO	No assigned EC number	0.7157	0.9393	0.7265	yes	N/A
A1KSJ8	RL19_NEIMF	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
Q9JVL1	RL19_NEIMA	No assigned EC number	0.7096	0.9393	0.7685	yes	N/A
B1XVN0	RL19_POLNS	No assigned EC number	0.6736	0.9393	0.7099	yes	N/A
Q82U36	RL19_NITEU	No assigned EC number	0.6739	0.9292	0.6969	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	3e-44
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	3e-37
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	3e-35
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	3e-33
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	2e-22

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score =  138 bits (351), Expect = 3e-44
 Identities = 53/93 (56%), Positives = 72/93 (77%), Gaps = 3/93 (3%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLI++IE E++   +K+IP+F  GDT+ V++ V+EG ++RIQA+EG+VI+RR +GLN  
Sbjct: 1  MNLIKEIEAEQL---RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNET 57

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKISY  G+ERTF L+SP I SI V RRG 
Sbjct: 58 FTVRKISYGVGVERTFPLHSPRIDSIEVVRRGK 90

Length = 116

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score =  120 bits (304), Expect = 3e-37
 Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 3/93 (3%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MNLI++IE E++   KK++P+F  GDT+ V++ + EG ++RIQ +EG+VI++R +GLNS 
Sbjct: 1  MNLIKEIEAEQL---KKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNST 57

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS   G+ER F L+SP I  I V RRG 
Sbjct: 58 FTVRKISQGVGVERVFPLHSPRIDKIEVVRRGK 90

Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score =  116 bits (292), Expect = 3e-35
 Identities = 50/99 (50%), Positives = 75/99 (75%), Gaps = 4/99 (4%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          + +IQ++EQE+I   KK+IP F  GDT+ V++ ++EG+++R+QA+EG+VI+RR +G++  
Sbjct: 3  IPIIQQLEQEQI---KKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISET 59

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAYI 98
          F VRKISY  G+ER F L+SP+I SI V RRG  R A +
Sbjct: 60 FTVRKISYGVGVERVFPLHSPLIESIEVVRRGKVRRAKL 98

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score =  110 bits (278), Expect = 3e-33
 Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 4/99 (4%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
           NLI++IEQE   +LKK++PDF  GDT+ V++ ++EG ++RIQ +EG+VI+RR  G+   
Sbjct: 1  QNLIKQIEQE---QLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGET 57

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAYI 98
          F VRKISY  G+ER F L+SP I SI V RRG  R A +
Sbjct: 58 FTVRKISYGVGVERIFPLHSPNIDSIEVVRRGKVRRAKL 96

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score = 83.4 bits (207), Expect = 2e-22
 Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 3/90 (3%)

Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
           L+++IE E +   KKN+P    GDT+ V + + EG ++R+Q YEG VI+++N GLN+  
Sbjct: 6  QLVKEIESEFL---KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTI 62

Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRR 91
           VRK+    G+ER F L+SP ++SI V RR
Sbjct: 63 TVRKVFQGIGVERVFLLHSPKLASIEVLRR 92

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
CHL00084	117	rpl19 ribosomal protein L19	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
KOG1698|consensus	201		99.96
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	89.23
smart00743	61	Agenet Tudor-like domain present in plant sequence	87.71

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-44  Score=248.96  Aligned_cols=95  Identities=55%  Similarity=0.959  Sum_probs=92.9

Q ss_pred             Cc--hHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEee
Q psy3777           1 MN--LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL   78 (99)
Q Consensus         1 m~--li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl   78 (99)
                      |+  +++.+|++|+   ++++|+|+|||||+|++++.||+|+|+|.|+|+|||++|+|+++|||||++++|+|||++||+
T Consensus         1 m~~~~i~~le~~q~---~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~   77 (115)
T COG0335           1 MNIPIIQQLEQEQI---KKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPL   77 (115)
T ss_pred             CCcHHHHHHHHHHH---HhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeec
Confidence            55  8999999999   788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEEEeee-eeeee
Q psy3777          79 YSPIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        79 ~SP~I~~I~V~~~~k-rra~l   98 (99)
                      |||.|++|+|+++|| |||||
T Consensus        78 ~SP~Ie~IeV~rrGkVRRAKL   98 (115)
T COG0335          78 HSPLIESIEVVRRGKVRRAKL   98 (115)
T ss_pred             CCCceeEEEEEecCceeeeee
Confidence            999999999999999 99998

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=1.1e-43  Score=246.78  Aligned_cols=95  Identities=58%  Similarity=0.960  Sum_probs=93.5

Q ss_pred             CchHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecC
Q psy3777           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (99)
Q Consensus         1 m~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~S   80 (99)
                      |++++.+|++|+   ++++|+|+|||+|+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+||
T Consensus         1 ~~~i~~~~~~~~---~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~S   77 (116)
T PRK05338          1 MNLIKEIEAEQL---RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHS   77 (116)
T ss_pred             CcHHHHHHHHHh---hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCCC
Confidence            899999999999   78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeee-eeeee
Q psy3777          81 PIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        81 P~I~~I~V~~~~k-rra~l   98 (99)
                      |.|++|+|+++|| |||+|
T Consensus        78 P~I~~IeV~r~gkvRRAKL   96 (116)
T PRK05338         78 PRIDSIEVVRRGKVRRAKL   96 (116)
T ss_pred             CcccEEEEEEecccchhhe
Confidence            9999999999999 99998

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=1.2e-43  Score=245.65  Aligned_cols=95  Identities=54%  Similarity=0.905  Sum_probs=93.6

Q ss_pred             CchHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecC
Q psy3777           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (99)
Q Consensus         1 m~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~S   80 (99)
                      |++++.+|++|+   +.++|+|+|||+|+|++.+.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+||
T Consensus         1 m~~i~~~e~~~~---~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~S   77 (113)
T TIGR01024         1 QNLIKQIEQEQL---KKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHS   77 (113)
T ss_pred             CcHHHHHHHHHh---hcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcCC
Confidence            899999999999   78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeee-eeeee
Q psy3777          81 PIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        81 P~I~~I~V~~~~k-rra~l   98 (99)
                      |.|++|+|+++|| |||+|
T Consensus        78 P~I~~IeVl~~~kvrRaKL   96 (113)
T TIGR01024        78 PNIDSIEVVRRGKVRRAKL   96 (113)
T ss_pred             CccceEEEEEeCccchhhe
Confidence            9999999999999 99998

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=2.7e-43  Score=245.15  Aligned_cols=94  Identities=45%  Similarity=0.716  Sum_probs=91.7

Q ss_pred             chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (99)
Q Consensus         2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP   81 (99)
                      ++++.+|++|+   ++++|+|+|||+|+|++.+.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+|||
T Consensus         6 ~~i~~~~~~~~---~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl~SP   82 (117)
T CHL00084          6 QLVKEIESEFL---KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLLHSP   82 (117)
T ss_pred             HHHHHHHHHHh---hcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEecCCC
Confidence            47899999999   789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeee-eeeee
Q psy3777          82 IISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        82 ~I~~I~V~~~~k-rra~l   98 (99)
                      .|++|+|+++|| |||+|
T Consensus        83 ~I~~IeV~r~gkvRRAKL  100 (117)
T CHL00084         83 KLASIEVLRRSKVRRAKL  100 (117)
T ss_pred             ccceEEEEEeCccchhee
Confidence            999999999999 99998

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5e-43  Score=242.36  Aligned_cols=95  Identities=55%  Similarity=0.937  Sum_probs=92.8

Q ss_pred             CchHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecC
Q psy3777           1 MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (99)
Q Consensus         1 m~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~S   80 (99)
                      |||++.+|++|+   +.++|+|+|||+|+|++.+.||+|+|+|.|+|+|||++++|+++||||||+++|+|||++||+||
T Consensus         1 ~~~i~~~e~~~~---~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l~S   77 (113)
T PF01245_consen    1 MNLIEEVEREQI---KKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPLYS   77 (113)
T ss_dssp             -HHHHHHHHTTC---SSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             ChHHHHHHHHHh---hcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEcCC
Confidence            899999999999   89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeee-eeeee
Q psy3777          81 PIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        81 P~I~~I~V~~~~k-rra~l   98 (99)
                      |.|++|+|+++|+ |||+|
T Consensus        78 P~I~~IeV~~~~kvrRaKL   96 (113)
T PF01245_consen   78 PLIKSIEVLRRGKVRRAKL   96 (113)
T ss_dssp             TTEEEEEEEEEBECSSSST
T ss_pred             CCeEEEEEEEecccchhhh
Confidence            9999999999999 99998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>KOG1698|consensus

Probab=99.96  E-value=6.2e-29  Score=185.50  Aligned_cols=95  Identities=31%  Similarity=0.619  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHhh--cCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecC
Q psy3777           3 LIQKIEQEEIIRL--KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYS   80 (99)
Q Consensus         3 li~~~e~~~~~~~--~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~S   80 (99)
                      +++.||.++|...  ..++|+|+|||+|+|++.+++ ++.++..|.|+||+++++|+++||+|||++.|+|||-.|||||
T Consensus        76 ~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~-~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~~pLYs  154 (201)
T KOG1698|consen   76 IMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPE-NKRKVSRFKGICIRRRNAGLNATFLLRNVIAGVGVEIVFPLYS  154 (201)
T ss_pred             HHHhhCHHHHHHHHhcccCCccccccEEEEEecCCc-cCCceeEEEEEEEEecccCCcceEEeeehhhCceeEEEEeccC
Confidence            6788888887744  579999999999999999996 6999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEEeee-eeeee
Q psy3777          81 PIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        81 P~I~~I~V~~~~k-rra~l   98 (99)
                      |+|++|+|++..| |||+|
T Consensus       155 P~IkeI~Vlk~~k~rra~L  173 (201)
T KOG1698|consen  155 PNIKEIKVLKLEKRRRAKL  173 (201)
T ss_pred             CCeeEEEEechhhcccchh
Confidence            9999999999988 99987

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=89.23  E-value=1.5  Score=27.02  Aligned_cols=38  Identities=21%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             cCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEE
Q psy3777          22 FVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRK   65 (99)
Q Consensus        22 f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~   65 (99)
                      |++||.|+|.... +|  -+-.=|.|.|++..+.+   ++.|+-
T Consensus         1 F~~G~~VEV~s~e-~g--~~gaWf~a~V~~~~~~~---~~~V~Y   38 (68)
T PF05641_consen    1 FKKGDEVEVSSDE-DG--FRGAWFPATVLKENGDD---KYLVEY   38 (68)
T ss_dssp             --TT-EEEEEE-S-BT--T--EEEEEEEEEEETT----EEEEEE
T ss_pred             CCCCCEEEEEEcC-CC--CCcEEEEEEEEEeCCCc---EEEEEE
Confidence            7899999998754 34  37789999999998765   777764

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=87.71  E-value=4.1  Score=24.07  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             CCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEee
Q psy3777          20 PDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL   78 (99)
Q Consensus        20 p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl   78 (99)
                      +.|++||.|.+.+.. +     -.=|.|+|++..+   +..+.|+=...+.|-+-.|+.
T Consensus         1 ~~~~~G~~Ve~~~~~-~-----~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~   50 (61)
T smart00743        1 SDFKKGDRVEVFSKE-E-----DSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDW   50 (61)
T ss_pred             CCcCCCCEEEEEECC-C-----CEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeH
Confidence            468999999998853 2     2589999999886   445777544433776666653

Domain in plant sequences with possible chromatin-associated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1vs6_P	115	Crystal Structure Of The Bacterial Ribosome From Es		1e-24
1p85_N	114	Real Space Refined Coordinates Of The 50s Subunit F		2e-24
1vsa_N	146	Crystal Structure Of A 70s Ribosome-Trna Complex Re		3e-16
2j01_T	146	Structure Of The Thermus Thermophilus 70s Ribosome		4e-16
3pyo_P	137	Crystal Structure Of A Complex Containing Domain 3		4e-16
3fin_T	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		5e-16
3tve_R	137	Crystal Structure Analysis Of Ribosomal Decoding. T		5e-16
1nkw_N	166	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-16
1pnu_N	125	Crystal Structure Of A Streptomycin Dependent Ribos		9e-16
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		2e-08
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		4e-05

>pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 73/91 (80%), Gaps = 3/91 (3%)
Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
          N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 3  NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 59
Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
           VRKIS  EG+ER FQ +SP++ SI VKRRG
Sbjct: 60 TVRKISNGEGVERVFQTHSPVVDSISVKRRG 90

>pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 73/91 (80%), Gaps = 3/91 (3%)
Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
          N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2  NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58
Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRRG 92
           VRKIS  EG+ER FQ +SP++ SI VKRRG
Sbjct: 59 TVRKISNGEGVERVFQTHSPVVDSISVKRRG 89

>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 15 LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
          ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75 TFQLYSPIISSIIVKRRG 92
           F L+SP+I  I + +RG
Sbjct: 75 IFPLHSPLIQKIDIVQRG 92

>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 15 LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
          ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75 TFQLYSPIISSIIVKRRG 92
           F L+SP+I  I + +RG
Sbjct: 75 IFPLHSPLIQKIDIVQRG 92

>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 15 LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
          ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75 TFQLYSPIISSIIVKRRG 92
           F L+SP+I  I + +RG
Sbjct: 75 IFPLHSPLIQKIDIVQRG 92

>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 15 LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
          ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75 TFQLYSPIISSIIVKRRG 92
           F L+SP+I  I + +RG
Sbjct: 75 IFPLHSPLIQKIDIVQRG 92

>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 137

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 15 LKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIER 74
          ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ F VRK+SY  G+ER
Sbjct: 15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVER 74
Query: 75 TFQLYSPIISSIIVKRRG 92
           F L+SP+I  I + +RG
Sbjct: 75 IFPLHSPLIQKIDIVQRG 92

>pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 3  LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
          L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +F 
Sbjct: 12 LLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFT 67
Query: 63 VRKISYNEGIERTFQLYSPIISSIIVKRRG 92
          VRKIS+ EG+ER F   SP+++ + +  RG
Sbjct: 68 VRKISFGEGVERVFPFASPLVNQVTIVERG 97

>pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 3  LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFI 62
          L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +F 
Sbjct: 11 LLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFT 66
Query: 63 VRKISYNEGIERTFQLYSPIISSIIVKRRG 92
          VRKIS+ EG+ER F   SP+++ + +  RG
Sbjct: 67 VRKISFGEGVERVFPFASPLVNQVTIVERG 96

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 17  KNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTF 76
           + +P   TGD + + L V E  R R+  Y+GIVISR+N G+++   +R+I    G+E  F
Sbjct: 138 RPVPGIRTGDIVQIRLEVPENKR-RLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF 196
Query: 77  QLYSPIISSI-IVKRRGDRNAYI 98
            LYSP I  I +V  R  R A +
Sbjct: 197 PLYSPNIKEIKVVSHRKVRKARL 219

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78
          IP+F  G  + V       + K I  + GI I R  +GL + FI+R +   +G+E  F+L
Sbjct: 1  IPEFYVGSILRVTTADPYASGK-ISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59
Query: 79 YSPIISSIIV----KRRGDRNAYI 98
          Y+P +  I V    KR  D   Y+
Sbjct: 60 YNPRVQEIQVVKLEKRLDDSLLYL 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	8e-41
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	1e-39
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	1e-39
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	2e-38
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	2e-32

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score =  129 bits (326), Expect = 8e-41
 Identities = 49/92 (53%), Positives = 73/92 (79%), Gaps = 3/92 (3%)

Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
          N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2  NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58

Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
           VRKIS  EG+ER FQ +SP++ SI VKRRG 
Sbjct: 59 TVRKISNGEGVERVFQTHSPVVDSISVKRRGA 90

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score =  127 bits (321), Expect = 1e-39
 Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 3/93 (3%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
            LI+ +E      ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ 
Sbjct: 4  GALIKLVESRY---VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTT 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRK+SY  G+ER F L+SP+I  I + +RG 
Sbjct: 61 FTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGR 93

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  130 bits (327), Expect = 1e-39
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1   MNLIQKIEQEEI--IRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLN 58
            +++  + ++ +      + +P   TGD + + L V E  ++R+  Y+GIVISR+N G++
Sbjct: 120 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPEN-KRRLSVYKGIVISRQNAGIH 178

Query: 59  SNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
           +   +R+I    G+E  F LYSP I  I V     
Sbjct: 179 TTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRK 213

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score =  125 bits (315), Expect = 2e-38
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
            L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +
Sbjct: 10 GELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 65

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS+ EG+ER F   SP+++ + +  RG 
Sbjct: 66 FTVRKISFGEGVERVFPFASPLVNQVTIVERGK 98

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  108 bits (271), Expect = 2e-32
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL 78
          IP+F  G  + V          +I  + GI I R  +GL + FI+R +   +G+E  F+L
Sbjct: 1  IPEFYVGSILRVTTADPYA-SGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59

Query: 79 YSPIISSIIVKRRGDR 94
          Y+P +  I V +   R
Sbjct: 60 YNPRVQEIQVVKLEKR 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	90.0
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	87.17

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=1.8e-45  Score=254.05  Aligned_cols=94  Identities=54%  Similarity=0.918  Sum_probs=92.5

Q ss_pred             chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (99)
Q Consensus         2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP   81 (99)
                      |+++.+|++||   +.++|+|+|||||+|++.+.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus         2 ~~i~~~e~~~~---~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP   78 (114)
T 3r8s_P            2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP   78 (114)
T ss_dssp             CHHHHHHGGGC---CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred             hHHHHHHHHHh---ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence            68999999999   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeee-eeeee
Q psy3777          82 IISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        82 ~I~~I~V~~~~k-rra~l   98 (99)
                      .|++|||+++|| |||+|
T Consensus        79 ~I~~IeV~r~gkvRRAKL   96 (114)
T 3r8s_P           79 VVDSISVKRRGAVRKAKL   96 (114)
T ss_dssp             TEEEEEEEECEECCSSCC
T ss_pred             ccceEEEEEccccchhhe
Confidence            999999999999 99998

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=4.9e-45  Score=264.94  Aligned_cols=98  Identities=38%  Similarity=0.655  Sum_probs=94.2

Q ss_pred             CchHHHHHHHHHHhh-cCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeec
Q psy3777           1 MNLIQKIEQEEIIRL-KKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLY   79 (99)
Q Consensus         1 m~li~~~e~~~~~~~-~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~   79 (99)
                      ||+|+.+|++|+.++ ++++|+|+|||||+|++++.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|
T Consensus         5 M~li~~le~eqlk~l~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh   84 (166)
T 2zjr_M            5 IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   84 (166)
T ss_dssp             CCCCHHHHHHHTTGGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHHHHHHHHhhccccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence            789999999999433 3799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEEEeee-eeeee
Q psy3777          80 SPIISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        80 SP~I~~I~V~~~~k-rra~l   98 (99)
                      ||.|++|+|+++|| |||||
T Consensus        85 SP~I~kIEVvrrGKVRRAKL  104 (166)
T 2zjr_M           85 SPLVNQVTIVERGKVRRAKL  104 (166)
T ss_dssp             CTTEEEEEEEECCCCSSSCC
T ss_pred             CCccceEEEEeccccchhhe
Confidence            99999999999999 99998

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=3.4e-44  Score=256.06  Aligned_cols=94  Identities=46%  Similarity=0.795  Sum_probs=91.9

Q ss_pred             chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (99)
Q Consensus         2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP   81 (99)
                      +||+.+|++|+   ++++|+|+|||||+|++.+.||+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||
T Consensus         5 ~li~~ie~~~~---~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP   81 (146)
T 3v2d_T            5 ALIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSP   81 (146)
T ss_dssp             HHHHHHHHTTC---CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred             HHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCC
Confidence            47999999999   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeee-eeeee
Q psy3777          82 IISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        82 ~I~~I~V~~~~k-rra~l   98 (99)
                      .|++|+|+++|| |||+|
T Consensus        82 ~I~~IeVvrrgkVRRAKL   99 (146)
T 3v2d_T           82 LIQKIDIVQRGRARRAKL   99 (146)
T ss_dssp             TEEEEEEEECEECSSSCC
T ss_pred             ccceEEEEecCccchhhe
Confidence            999999999999 99998

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1.7e-40  Score=224.15  Aligned_cols=79  Identities=29%  Similarity=0.538  Sum_probs=77.6

Q ss_pred             CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCccceEEEEEeee-eeee
Q psy3777          19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAY   97 (99)
Q Consensus        19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~I~~I~V~~~~k-rra~   97 (99)
                      +|+|+|||+|+|++.+. |+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|++|||+++|| ||||
T Consensus         1 iP~f~~GDtv~V~~~i~-g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaK   79 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADP-YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDS   79 (98)
T ss_pred             CCccCCCCEEEEEEEEC-CCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCccccee
Confidence            69999999999999999 789999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             e
Q psy3777          98 I   98 (99)
Q Consensus        98 l   98 (99)
                      |
T Consensus        80 L   80 (98)
T 2ftc_K           80 L   80 (98)
T ss_pred             E
Confidence            8

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=5.4e-39  Score=242.55  Aligned_cols=90  Identities=36%  Similarity=0.622  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCccc
Q psy3777           5 QKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPIIS   84 (99)
Q Consensus         5 ~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~I~   84 (99)
                      +.+|++|+   ++++|+|+|||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||+|||.|+
T Consensus       129 e~ie~~q~---kkdiPeFr~GDtV~V~vkI~E-~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~  204 (233)
T 3bbo_R          129 KAVHAAEE---LRPVPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIK  204 (233)
T ss_dssp             THHHHTTC---CSCCSSSCCCSCCCCCCCBCC-CSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSS
T ss_pred             HHHHHHhh---ccCCCccCCCCEEEEEEEecc-CcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccc
Confidence            45555555   789999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeee-eeeee
Q psy3777          85 SIIVKRRGD-RNAYI   98 (99)
Q Consensus        85 ~I~V~~~~k-rra~l   98 (99)
                      +|+|+++|| |||||
T Consensus       205 kIEVvRrgKVRRAKL  219 (233)
T 3bbo_R          205 EIKVVSHRKVRKARL  219 (233)
T ss_dssp             CCCCCCCSCCCCSCS
T ss_pred             eEEEEeccccchhhh
Confidence            999999999 99998

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=90.00  E-value=1.2  Score=28.66  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             CCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC-------ccceEEEEEe
Q psy3777          23 VTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP-------IISSIIVKRR   91 (99)
Q Consensus        23 ~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP-------~I~~I~V~~~   91 (99)
                      ..|+.|.++-.      .-+-.|+|.+..+..  .++|+||+|.+ ..|+    |.+||       -|+++++++-
T Consensus         7 ~iGs~VSi~c~------d~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~----~~~s~eVtls~~DI~~L~ii~~   69 (84)
T 2vc8_A            7 WLGSIVSINCG------DSLGVYQGRVSAVDQ--VSQTISLTRPF-HNGV----KCLVPEVTFRAGDITELKILEI   69 (84)
T ss_dssp             TTTCEEEEECC------TTTCEEEEEEEEEET--TTTEEEEEEEE-ETTE----ECSSSEEEEEGGGCSEEEEEEC
T ss_pred             ccCCEEEEEEC------CCceEEEEEEEEecc--CCCeEEEehhh-hCCC----CCCCcEEEEEecChhheEEEec
Confidence            46888888753      334589999999874  46889999996 3454    44444       5778888764

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=87.17  E-value=3.1  Score=25.47  Aligned_cols=47  Identities=15%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEee
Q psy3777          19 IPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQL   78 (99)
Q Consensus        19 ~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl   78 (99)
                      .|.|++||.|.-.+  ..+     +.|.+.|.++.+.   .+++|  .+.+ |.+.+...
T Consensus         4 ~~~~~vGd~vmArW--~D~-----~yYpA~I~si~~~---~~Y~V--~F~d-G~~etvk~   50 (67)
T 3p8d_A            4 SSEFQINEQVLACW--SDC-----RFYPAKVTAVNKD---GTYTV--KFYD-GVVQTVKH   50 (67)
T ss_dssp             -CCCCTTCEEEEEC--TTS-----CEEEEEEEEECTT---SEEEE--EETT-SCEEEEEG
T ss_pred             CcccccCCEEEEEc--CCC-----CEeeEEEEEECCC---CeEEE--EEeC-CceEEEeH
Confidence            57899999999997  333     6999999999986   35888  4556 76666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	3e-26
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	1e-25
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	8e-23

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 91.4 bits (227), Expect = 3e-26
 Identities = 49/92 (53%), Positives = 73/92 (79%), Gaps = 3/92 (3%)

Query: 2  NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNF 61
          N+I+++EQE+   +K+++P F  GDT+ V + V+EG++KR+QA+EG+VI+ RN+GL+S F
Sbjct: 2  NIIKQLEQEQ---MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAF 58

Query: 62 IVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
           VRKIS  EG+ER FQ +SP++ SI VKRRG 
Sbjct: 59 TVRKISNGEGVERVFQTHSPVVDSISVKRRGA 90

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 89.8 bits (223), Expect = 1e-25
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
            L++ IEQ+      + +PDF  GDT+ V+  V EG R R QA+EG+VI+    G   +
Sbjct: 9  GELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD 93
          F VRKIS+ EG+ER F   SP+++ + +  RG 
Sbjct: 65 FTVRKISFGEGVERVFPFASPLVNQVTIVERGK 97

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 83.5 bits (206), Expect = 8e-23
 Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 1  MNLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSN 60
          MN    I+  E   ++ ++P+F  GDT+ V+  V EG R RIQ +EGIVI  R  G N+ 
Sbjct: 1  MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTT 60

Query: 61 FIVRKISYNEGIERTFQLYSPIISSIIVKRRGD-RNAYI 98
          F VRK+SY  G+ER F L+SP+I  I + +RG  R A +
Sbjct: 61 FTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKL 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	94.51

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=3.9e-45  Score=248.79  Aligned_cols=93  Identities=43%  Similarity=0.782  Sum_probs=89.6

Q ss_pred             chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (99)
Q Consensus         2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP   81 (99)
                      +|++.+|++++    +++|+|+|||+|+|++++.||+|+|+|.|+|+|||++++|+++||||||+++|+|||++||+|||
T Consensus        10 ~li~~ie~~~~----k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl~SP   85 (108)
T d2zjrm1          10 ELLRGIEQDHT----RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASP   85 (108)
T ss_dssp             HHHHHTTGGGC----CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCT
T ss_pred             HHHHHHHHHhC----cCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEcCCC
Confidence            57888888876    48999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeee-eeeee
Q psy3777          82 IISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        82 ~I~~I~V~~~~k-rra~l   98 (99)
                      .|++|+|+++|| |||+|
T Consensus        86 ~i~~IeV~r~~kvRRakL  103 (108)
T d2zjrm1          86 LVNQVTIVERGKVRRAKL  103 (108)
T ss_dssp             TEEEEEEEECCCCSSSCC
T ss_pred             CccEEEEEEecceeeeee
Confidence            999999999999 99998

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.5e-43  Score=248.37  Aligned_cols=93  Identities=46%  Similarity=0.804  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCCc
Q psy3777           3 LIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSPI   82 (99)
Q Consensus         3 li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP~   82 (99)
                      |++.+|++|+   +.++|+|+|||+|+|++.+.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||+
T Consensus         6 Li~~iE~~~~---k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl~SP~   82 (138)
T d2j01t1           6 LIKLVESRYV---RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPL   82 (138)
T ss_dssp             HHHHHHCCCC---CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSSSSC
T ss_pred             HHHHHHHHhh---cccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEeccCCC
Confidence            6999999998   8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeee-eeeee
Q psy3777          83 ISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        83 I~~I~V~~~~k-rra~l   98 (99)
                      |++|+|+++|| |||||
T Consensus        83 I~~IeVvr~gkvRRAKL   99 (138)
T d2j01t1          83 IQKIDIVQRGRARRAKL   99 (138)
T ss_dssp             SCCCBCCCCBCCSSSSC
T ss_pred             ccceEEeecCceehhhe
Confidence            99999999999 99998

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.8e-46  Score=254.01  Aligned_cols=94  Identities=54%  Similarity=0.918  Sum_probs=92.3

Q ss_pred             chHHHHHHHHHHhhcCCCCCcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecCeeEEEEEeecCC
Q psy3777           2 NLIQKIEQEEIIRLKKNIPDFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYNEGIERTFQLYSP   81 (99)
Q Consensus         2 ~li~~~e~~~~~~~~~~~p~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~gvGVEr~fpl~SP   81 (99)
                      |||+.+|++|+   ++++|+|+|||+|+|++++.||+|+|+|.|+|+|||++|+|+++||||||+++|+|||++||||||
T Consensus         2 nli~~ie~~q~---k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~SP   78 (114)
T d2gycn1           2 NIIKQLEQEQM---KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSP   78 (114)
T ss_dssp             CTTTSSSSSTT---CCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCCSS
T ss_pred             hHHHHHHHHHh---hccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeCCC
Confidence            78999999999   889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEeee-eeeee
Q psy3777          82 IISSIIVKRRGD-RNAYI   98 (99)
Q Consensus        82 ~I~~I~V~~~~k-rra~l   98 (99)
                      +|++|+|+++|| |||||
T Consensus        79 ~I~~IeV~~~~kvRRaKL   96 (114)
T d2gycn1          79 VVDSISVKRRGAVRKAKL   96 (114)
T ss_dssp             CTTCCCCCCCSCCCCSCT
T ss_pred             CcceeEEeccCceehhhe
Confidence            999999999999 99998

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.51  E-value=0.037  Score=33.51  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=41.8

Q ss_pred             CcCCCCEEEEEEEEecCCceeeceEEEEEEEEecCCCcceEEEEEeecC--eeEEEEEeecCCccceEEEEEeee
Q psy3777          21 DFVTGDTIIVNLNVIEGTRKRIQAYEGIVISRRNKGLNSNFIVRKISYN--EGIERTFQLYSPIISSIIVKRRGD   93 (99)
Q Consensus        21 ~f~~GD~v~V~~~i~eg~k~r~q~f~GvvIa~r~~g~~stftlR~i~~g--vGVEr~fpl~SP~I~~I~V~~~~k   93 (99)
                      .+.|||.|+|......+    -..|+|+++-.-.-+-...++| |.-+|  +|+.      .-.|++|+++.++|
T Consensus        10 ~~~~GD~Vri~~~~~~~----~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi~------~~~i~~ievlek~k   73 (74)
T d1zq1a1          10 NINVGDFVRITKEEDGE----EVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIA------LEKIRRIEVLERAK   73 (74)
T ss_dssp             TCCTTCEEEEEEESSSS----EEECCEEECCCCTTCCCSEEEE-EETTSCEEEEE------GGGEEEEEEEECCC
T ss_pred             CCCCCCEEEEEEecCCC----ceEEEEEEcCCcccCCCCEEEE-EecCceeeccc------hhHeeEEEEEeecc
Confidence            57899999997753222    1489999997644333455665 56666  4542      35788999998875