Psyllid ID: psy3869

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPKVESEPPEQSTTDSQETDQDQDVPEQ
Secondary Structure (PSIPRED)
cHHHHHccccccHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEcccccccccccccccccccHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvknvldgnmesnsyEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKEskkgatgglcetahqRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELldtessdnegedndndndedkddnehdpdqstqdsekwspyeeepfperntapaneetlvepkveseppeqsttdsqetdqdqdvpeq
Flexible Loop (DISEMBL)
mvknvldgnmesnSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLdtessdnegedndndndedkddnehdpdqstqdsekwspyeeepfperntapaneetlvepkveseppeqsttdsqetdqdqdvpeq
Low Complexity Region (SEG)
MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCfkiiifkkDCKLTIELLdtessdnegedndndndedkddnehdpdQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPKVESEPPeqsttdsqetdqdqdVPEQ
Disordered region (IsUnstruct)
****************DTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL***************************************************************************************
Disordered Region (DISOPRED)
MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFL*****************RVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTESSDNE***NDNDNDEDKDDNEH**************************************************************
Disordered Region (DISEMBL)
********NMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTE*********************************************NTAPA**********************************
Disordered Region (DISPRO)
MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKG**********QRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTE*************DEDKDDNEHDPDQSTQDSEKWSPYEEEPFP*****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPKVESEPPEQSTTDSQETDQDQDVPEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q96ST3	1273	Paired amphipathic helix	yes	N/A	0.778	0.124	0.441	2e-35
Q60520	1274	Paired amphipathic helix	yes	N/A	0.778	0.124	0.430	4e-35
O75182	1162	Paired amphipathic helix	no	N/A	0.610	0.106	0.484	9e-31
Q62141	1098	Paired amphipathic helix	no	N/A	0.610	0.112	0.484	2e-30
Q9SRH9	1372	Paired amphipathic helix	yes	N/A	0.512	0.075	0.3	9e-08
Q9XIK6	1173	Paired amphipathic helix	no	N/A	0.492	0.085	0.266	2e-07
O48686	1330	Paired amphipathic helix	no	N/A	0.507	0.077	0.298	5e-07
Q9XIE1	1162	Paired amphipathic helix	no	N/A	0.517	0.090	0.252	6e-07
O04539	1326	Paired amphipathic helix	no	N/A	0.487	0.074	0.266	4e-06
Q9LFQ3	1367	Paired amphipathic helix	no	N/A	0.497	0.073	0.256	1e-05

>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 112/181 (61%), Gaps = 23/181 (12%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct: 965  MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1024

Query: 61   LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKK--DCKLTIELLDT 118
            L E+  GATGG   T + R  LE  YQ+K+E  M+DENCFK++  +     +LTIELLDT
Sbjct: 1025 LAENNNGATGGQLNTQNSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDT 1084

Query: 119  ESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPK 178
            E      E+N +D  E               +E+WS Y E       T+P   E L +  
Sbjct: 1085 E------EENSDDPVE---------------AERWSDYVERYMNSDTTSPELREHLAQKP 1123

Query: 179  V 179
            V
Sbjct: 1124 V 1124

Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA (By similarity). Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation.
Homo sapiens (taxid: 9606)

>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 23/181 (12%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct: 966  MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEVCVQVTDLY 1025

Query: 61   LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKK--DCKLTIELLDT 118
            L E+  GATGG   +   R  LE  YQ+K+E  M+DENCFK++  +     +LT+ELLDT
Sbjct: 1026 LAENNNGATGGQLNSQTSRSLLESAYQRKAEQLMSDENCFKLMFIQSQGQVQLTVELLDT 1085

Query: 119  ESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVEPK 178
            E      E+N +D  E               +E+WS Y E       T+P   E L +  
Sbjct: 1086 E------EENSDDPVE---------------AERWSDYVERYMSSDTTSPELREHLAQKP 1124

Query: 179  V 179
            V
Sbjct: 1125 V 1125

Acts as a transcriptional repressor. Corepressor for REST. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Also interacts with MXD1-MAX heterodimers to repress transcription by tethering SIN3A to DNA. Acts cooperatively with OGT to repress transcription in parallel with histone deacetylation.

Mus musculus (taxid: 10090)

>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 2/126 (1%)

Query: 1   MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
           MV+++L+G+++   YEDTLRE+F IHAY+ FT+DK+V N  RQL HLVSD+ C++  E +
Sbjct: 854 MVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELY 913

Query: 61  LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCK--LTIELLDT 118
           L E K+GA GG   +   R   E  YQ K+E  M DENCFK++  ++  +  +TIELLDT
Sbjct: 914 LNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDT 973

Query: 119 ESSDNE 124
           E +  E
Sbjct: 974 EEAQTE 979

Acts as a transcriptional repressor. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Interacts with MAD-MAX heterodimers by binding to MAD. The heterodimer then represses transcription by tethering SIN3B to DNA. Also forms a complex with FOXK1 which represses transcription.

Homo sapiens (taxid: 9606)

>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 2/126 (1%)

Query: 1   MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
           MV+++L+G+++   YEDTLRE+F IHAYI FT+DK+V N  RQL HLVSD+ C++  E +
Sbjct: 791 MVRSLLEGSIDPTQYEDTLREMFTIHAYIGFTMDKLVQNIARQLHHLVSDDVCLKVVELY 850

Query: 61  LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCK--LTIELLDT 118
           L E ++GA GG   +   R   E  YQ K+E  M DENCFK++  ++  +  +TIELLDT
Sbjct: 851 LNEQQRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRRGQVIMTIELLDT 910

Query: 119 ESSDNE 124
           E +  E
Sbjct: 911 EEAQTE 916

Acts as a transcriptional repressor. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Interacts with MAD-MAX heterodimers by binding to MAD. The heterodimer then represses transcription by tethering SIN3B to DNA. Also forms a complex with FOXK1 which represses transcription.

Mus musculus (taxid: 10090)

>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 16/120 (13%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET---CIECY 57
            ++  +LDG+ E+  +ED  R + G  +Y+ FTLDK++   V+QLQ +V+DE     ++ Y
Sbjct: 1152 VLYGLLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLY 1211

Query: 58   ETFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLD 117
            E + K  K G           RV ++  Y +   V + +EN +++       +L+I+L+D
Sbjct: 1212 E-YEKSRKPG-----------RV-IDSVYYENVRVLVHEENIYRLECSSLPSRLSIQLMD 1258

Acts as a transcriptional repressor. An histone deacetylase (HDAC) activity is required for transcription repression. May play a role in telomere stability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 20/120 (16%)

Query: 4    NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET-----CIECYE 58
            N+LDG++++  +ED  R +FG  +Y+ FTLDK+V   V+ L  + SDET      +  YE
Sbjct: 944  NLLDGSIDNTKFEDECRAIFGAQSYVLFTLDKLVQKFVKHLHSVASDETDTKLLQLHAYE 1003

Query: 59   TFLKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDT 118
             + K  K                 +  Y + +   + + N ++I    +  +L+I+L+++
Sbjct: 1004 NYRKPGK---------------FFDLVYHENACALLHEANIYRIRYSSEGTRLSIQLMNS 1048

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 4    NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
            N+LDG  ++  +ED  R + G  +YI FTLDK++   ++ LQ +V+DE   +  + +  E
Sbjct: 1108 NLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLIHKFIKHLQVVVADEMDNKLLQLYFYE 1167

Query: 64   SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKI-IIFKKDCKLTIELL 116
              +       ET    V     Y   + V + DEN ++I        KL+I+L+
Sbjct: 1168 KSRRP-----ETIFDAV-----YYDNTRVLLPDENIYRIECRLSTPAKLSIQLM 1211

Acts as a transcriptional repressor. Interacts with ERF7 to repress genes in abscisic acid and drought stress responses. The heterodimer represses transcription by tethering SNL3 to DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 4    NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
            N+LDG+ ++  +ED  R + G  +Y+ FTLDK+V   V+ L  + +DET  +  + +  E
Sbjct: 922  NLLDGSSDNTKFEDECRAIIGAQSYVLFTLDKLVQKFVKHLHAVAADETDTKLLQLYAYE 981

Query: 64   SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDT 118
            + +   G   +           Y + +   + D+N ++I       +L I+L+++
Sbjct: 982  NYR-KPGRFFDIV---------YHENARALLHDQNIYRIEYSSAQTRLGIQLMNS 1026

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 21/120 (17%)

Query: 4    NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKE 63
            N+LDG  +++ +ED  R + G  +Y+ FTLDK++   ++ LQ + +DE   +  + +  E
Sbjct: 1094 NLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIKHLQAVAADEMDNKLQQLYAYE 1153

Query: 64   SKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDC------KLTIELLD 117
              +               L+  Y + + V + DE+ ++I     +C      KL+I+LLD
Sbjct: 1154 KSRKPEK----------FLDAVYYENALVLLPDEDIYRI-----ECEQSTPSKLSIQLLD 1198

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 65/117 (55%), Gaps = 16/117 (13%)

Query: 4    NVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDET---CIECYETF 60
            ++L+G+ E++ +ED  R + G  +Y+ FTL+K++   V+QLQ +V+D+     ++ YE  
Sbjct: 1141 SLLNGSAENSKFEDECRAIIGNQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYE-- 1198

Query: 61   LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLD 117
             + S++            RV  +  Y + + + + +EN +++       +L+I+L+D
Sbjct: 1199 YENSRRPG----------RV-FDSVYYENARILLHEENIYRLECSSSPSRLSIQLMD 1244

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
189238796	1382	PREDICTED: similar to transcriptional co	0.674	0.099	0.575	1e-47
328713803	1197	PREDICTED: paired amphipathic helix prot	0.694	0.117	0.548	7e-47
380021387	1526	PREDICTED: LOW QUALITY PROTEIN: paired a	0.798	0.106	0.55	4e-46
328782542	1520	PREDICTED: paired amphipathic helix prot	0.798	0.106	0.55	5e-46
307179504	1494	Paired amphipathic helix protein Sin3a [	0.812	0.110	0.538	7e-46
383857517	1520	PREDICTED: paired amphipathic helix prot	0.802	0.107	0.553	1e-45
307192439	1529	Paired amphipathic helix protein Sin3a [	0.812	0.107	0.546	1e-45
350401320	1518	PREDICTED: paired amphipathic helix prot	0.802	0.107	0.553	1e-45
345490283	1379	PREDICTED: paired amphipathic helix prot	0.729	0.107	0.570	2e-45
340723348	1518	PREDICTED: paired amphipathic helix prot	0.802	0.107	0.547	2e-45

>gi|189238796|ref|XP_974873.2| PREDICTED: similar to transcriptional co-repressor Sin3A [Tribolium castaneum] gi|270009983|gb|EFA06431.1| hypothetical protein TcasGA2_TC009311 [Tribolium castaneum]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 114/158 (72%), Gaps = 21/158 (13%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKN+LDGNM++N+YEDTLRE+FGIHAYIAFTLDK+VS AVRQLQH V++ T I C + F
Sbjct: 1026 MVKNLLDGNMDANTYEDTLREMFGIHAYIAFTLDKVVSYAVRQLQHCVTERTAIACTDLF 1085

Query: 61   LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELLDTES 120
            +KE K+GATGG C TAH+R HLE  YQ+  E A+ DENCFKI I+KKDC++TIELLDT+S
Sbjct: 1086 VKEQKRGATGGSCSTAHKRAHLEMAYQRLGEKAVQDENCFKIYIYKKDCRMTIELLDTDS 1145

Query: 121  SDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEE 158
             D                      +  +D++KWS Y+E
Sbjct: 1146 ED---------------------PKKVEDTKKWSSYKE 1162

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713803|ref|XP_003245181.1| PREDICTED: paired amphipathic helix protein Sin3b-like [Acyrthosiphon pisum]

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 114/166 (68%), Gaps = 25/166 (15%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            M+KNVLDGNM+SN+YEDTLRE++GIHAY+ FTLDK+V  AVRQLQHLVSDE C ECY  F
Sbjct: 1044 MIKNVLDGNMDSNTYEDTLREMYGIHAYVGFTLDKVVVYAVRQLQHLVSDEYCQECYNIF 1103

Query: 61   LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMT-DENCFKIIIFKKDCKLTIELLDTE 119
            +KESKK  TGGLC TA QR+  E  YQ+++E A++ D NC+KI ++K +CKLT ELLDT+
Sbjct: 1104 IKESKKNGTGGLCSTACQRIAQEAAYQRRAEAALSNDNNCYKIFVYKSNCKLTFELLDTD 1163

Query: 120  SSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERN 165
            + DN                        QDS KW+ ++ EP  E N
Sbjct: 1164 TDDN------------------------QDSGKWTSFDNEPLSETN 1185

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021387|ref|XP_003694548.1| PREDICTED: LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3b-like [Apis florea]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 18/180 (10%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1139 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDPICQQCMELF 1198

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFKI I+KKDCK+T+ELL
Sbjct: 1199 QREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKIYIYKKDCKMTMELL 1258

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQ-STQDSEKWSPYEEE-PFPERNTAPANEETL 174
            DTE             DE  D+N  + ++     SEKWS Y E    P   T+P +  TL
Sbjct: 1259 DTE------------GDEAMDNNCREREREGVTVSEKWSTYVERFSAPAGQTSPKDTPTL 1306

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782542|ref|XP_003250163.1| PREDICTED: paired amphipathic helix protein Sin3b [Apis mellifera]

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 18/180 (10%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1139 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDPICQQCMELF 1198

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFKI I+KKDCK+T+ELL
Sbjct: 1199 QREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKIYIYKKDCKMTMELL 1258

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQ-STQDSEKWSPYEEE-PFPERNTAPANEETL 174
            DTE             DE  D+N  + ++     SEKWS Y E    P   T+P +  TL
Sbjct: 1259 DTE------------GDEAMDNNCREREREGVTVSEKWSTYVERFSAPAGQTSPKDTPTL 1306

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179504|gb|EFN67818.1| Paired amphipathic helix protein Sin3a [Camponotus floridanus]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 125/193 (64%), Gaps = 28/193 (14%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDKIV+ AVRQLQHLV+D  C +C E F
Sbjct: 1136 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKIVTYAVRQLQHLVTDTICQQCMELF 1195

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E  M DENCFKI I+KKDCK+T+ELL
Sbjct: 1196 QREQRQPKESSGAGGLCATAYMRLSAELSYQRKAEKTMVDENCFKIYIYKKDCKMTVELL 1255

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEEPFPERNTAPANEETLVE 176
            DTES          D   D    E + +  T  SEKWS Y      ER +APA + +   
Sbjct: 1256 DTES----------DETMDSGCREREREGVTV-SEKWSTYV-----ERFSAPAGQAS--- 1296

Query: 177  PK-----VESEPP 184
            PK      E+EPP
Sbjct: 1297 PKDTPALTENEPP 1309

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857517|ref|XP_003704251.1| PREDICTED: paired amphipathic helix protein Sin3a-like [Megachile rotundata]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 118/179 (65%), Gaps = 16/179 (8%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1139 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDPICQQCMELF 1198

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFKI I+KKDCK+T+ELL
Sbjct: 1199 QREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKIYIYKKDCKMTMELL 1258

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEE-PFPERNTAPANEETL 174
            DTE   +E  DN     E          +    SEKWS Y E    P   T+P +  TL
Sbjct: 1259 DTEG--DEAVDNSCRERE---------REGVTVSEKWSTYVERFSAPAGQTSPKDTPTL 1306

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192439|gb|EFN75655.1| Paired amphipathic helix protein Sin3a [Harpegnathos saltator]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/181 (54%), Positives = 120/181 (66%), Gaps = 16/181 (8%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1149 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDPICQQCMELF 1208

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFKI I+KKDCK+T+ELL
Sbjct: 1209 QREQRQSKENSGAGGLCATAYMRLGAELSYQRKAEKAMADENCFKIYIYKKDCKMTMELL 1268

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPY-EEEPFPERNTAPANEETLV 175
            DTE           D   D    E + +  T DSEKW+ Y E+   P   T+P +   L 
Sbjct: 1269 DTE----------GDETIDSGCREREREGVT-DSEKWTTYVEKYSTPAGQTSPKDTPALT 1317

Query: 176  E 176
            E
Sbjct: 1318 E 1318

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401320|ref|XP_003486117.1| PREDICTED: paired amphipathic helix protein Sin3b-like [Bombus impatiens]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 118/179 (65%), Gaps = 16/179 (8%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1137 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDLICQQCMELF 1196

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFKI I+KKDCK+T+ELL
Sbjct: 1197 QREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKIYIYKKDCKITMELL 1256

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEE-PFPERNTAPANEETL 174
            DTE   +E  DN     E          +    SEKWS Y E    P   T+P +  TL
Sbjct: 1257 DTEG--DEAMDNSCRERE---------REGVTVSEKWSTYVERFSAPAGQTSPKDTPTL 1304

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490283|ref|XP_003426344.1| PREDICTED: paired amphipathic helix protein Sin3a-like isoform 2 [Nasonia vitripennis]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 115/163 (70%), Gaps = 15/163 (9%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            M+KNVLDGNMESNSYEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C + F
Sbjct: 1177 MIKNVLDGNMESNSYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDAVCQQCMDLF 1236

Query: 61   LKESKKG----ATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ RV  E  YQ+K+E AM +ENCFKI I+KK+C++TIELL
Sbjct: 1237 HREQRQPKENCGAGGLCSTAYLRVASETAYQRKAEKAMAEENCFKIYIYKKNCRMTIELL 1296

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEE 159
            DT     EGE+    +  D+D       +S   +EKWS Y E 
Sbjct: 1297 DT-----EGEETVEGSCRDRD------RESVTATEKWSSYVER 1328

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723348|ref|XP_003400052.1| PREDICTED: paired amphipathic helix protein Sin3b-like [Bombus terrestris]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 118/179 (65%), Gaps = 16/179 (8%)

Query: 1    MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
            MVKNVLDGNMES +YEDTLRE+FGIHAYIAFTLDK+V+ AVRQLQHLVSD  C +C E F
Sbjct: 1137 MVKNVLDGNMESTAYEDTLREMFGIHAYIAFTLDKVVTYAVRQLQHLVSDLICQQCMELF 1196

Query: 61   LKESKK----GATGGLCETAHQRVHLEQGYQKKSEVAMTDENCFKIIIFKKDCKLTIELL 116
             +E ++       GGLC TA+ R+  E  YQ+K+E AM DENCFK+ I+KKDCK+T+ELL
Sbjct: 1197 QREQRQPKESSGAGGLCATAYMRLGAEMSYQRKAEKAMADENCFKVYIYKKDCKMTMELL 1256

Query: 117  DTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEE-PFPERNTAPANEETL 174
            DTE   +E  DN     E          +    SEKWS Y E    P   T+P +  TL
Sbjct: 1257 DTEG--DEAMDNSCRERE---------REGVTVSEKWSTYVERFSAPAGQTSPKDTPTL 1304

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
FB|FBgn0022764	2062	Sin3A "Sin3A" [Drosophila mela	0.571	0.056	0.543	5.2e-31
UNIPROTKB|E1BX21	1269	SIN3A "Uncharacterized protein	0.571	0.091	0.525	4.1e-29
UNIPROTKB|Q96ST3	1273	SIN3A "Paired amphipathic heli	0.571	0.091	0.516	8.6e-29
MGI|MGI:107157	1274	Sin3a "transcriptional regulat	0.571	0.091	0.5	2.3e-28
UNIPROTKB|F1SJ69	1227	SIN3A "Uncharacterized protein	0.571	0.094	0.516	2.6e-28
UNIPROTKB|F1MTR3	1274	SIN3A "Uncharacterized protein	0.571	0.091	0.516	2.9e-28
UNIPROTKB|J9P8L1	1274	SIN3A "Uncharacterized protein	0.571	0.091	0.516	2.9e-28
RGD|1311598	1282	Sin3a "SIN3 transcription regu	0.571	0.090	0.508	2e-27
ZFIN|ZDB-GENE-030131-2066	1264	sin3ab "SIN3 homolog A, transc	0.571	0.091	0.5	8.5e-27
ZFIN|ZDB-GENE-070620-3	1276	sin3aa "SIN3 homolog A, transc	0.571	0.090	0.508	2.7e-26

FB|FBgn0022764 Sin3A "Sin3A" [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 5.2e-31, P = 5.2e-31
 Identities = 63/116 (54%), Positives = 86/116 (74%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             M+KNVLDGNM+SN++EDT+RE+FGI+AYI+FTLDK+VSNAVRQLQ+ V++   ++C E F
Sbjct:  1567 MLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLDKVVSNAVRQLQYCVTERAALDCVELF 1626

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXDCKLTIELL 116
               E ++G TGG C  AH+    E  YQ+K+E  + +ENC        DC++TIELL
Sbjct:  1627 ATEQRRGCTGGFCRDAHKTFDREMSYQRKAESILNEENCFKVYIYKIDCRVTIELL 1682

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP;IMP;TAS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0000785 "chromatin" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0003712 "transcription cofactor activity" evidence=NAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0000791 "euchromatin" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0070822 "Sin3-type complex" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|E1BX21 SIN3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+N+LDGNM+S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   961 MVRNLLDGNMDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1020

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXX--DCKLTIELL 116
             L E+  GATGGL  +   R  LE  YQ+K+E  M++ENC            +LTIELL
Sbjct:  1021 LSENNNGATGGLLASQSSRNLLEATYQRKAEQLMSEENCFKLMFIQSRGQVQLTIELL 1078

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

UNIPROTKB|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 8.6e-29, Sum P(2) = 8.6e-29
 Identities = 61/118 (51%), Positives = 84/118 (71%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   965 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1024

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   T + R  LE  YQ+K+E  M+DENC            +LTIELL
Sbjct:  1025 LAENNNGATGGQLNTQNSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELL 1082

GO:0007568 "aging" evidence=IEA

GO:0010243 "response to organic nitrogen" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=RCA

GO:0016580 "Sin3 complex" evidence=NAS;IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0033558 "protein deacetylase activity" evidence=IMP

GO:0006476 "protein deacetylation" evidence=IMP

GO:1900181 "negative regulation of protein localization to nucleus" evidence=IMP

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IMP

GO:1901675 "negative regulation of histone H3-K27 acetylation" evidence=IMP

GO:0031937 "positive regulation of chromatin silencing" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0002230 "positive regulation of defense response to virus by host" evidence=IMP

GO:0002218 "activation of innate immune response" evidence=IMP

MGI|MGI:107157 Sin3a "transcriptional regulator, SIN3A (yeast)" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 59/118 (50%), Positives = 83/118 (70%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   966 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEVCVQVTDLY 1025

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   +   R  LE  YQ+K+E  M+DENC            +LT+ELL
Sbjct:  1026 LAENNNGATGGQLNSQTSRSLLESAYQRKAEQLMSDENCFKLMFIQSQGQVQLTVELL 1083

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IGI

GO:0000776 "kinetochore" evidence=IDA

GO:0000785 "chromatin" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IGI

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002218 "activation of innate immune response" evidence=ISO

GO:0002230 "positive regulation of defense response to virus by host" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=IPI

GO:0006260 "DNA replication" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0006476 "protein deacetylation" evidence=ISO

GO:0007568 "aging" evidence=ISO

GO:0008134 "transcription factor binding" evidence=IPI

GO:0010243 "response to organic nitrogen" evidence=ISO

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016580 "Sin3 complex" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=IDA;IPI

GO:0031937 "positive regulation of chromatin silencing" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0033558 "protein deacetylase activity" evidence=ISO

GO:0034613 "cellular protein localization" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043234 "protein complex" evidence=ISO

GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051595 "response to methylglyoxal" evidence=IDA

GO:0071333 "cellular response to glucose stimulus" evidence=IDA

GO:1900181 "negative regulation of protein localization to nucleus" evidence=ISO

GO:1901675 "negative regulation of histone H3-K27 acetylation" evidence=ISO

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=ISO

UNIPROTKB|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 61/118 (51%), Positives = 83/118 (70%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   919 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 978

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   T   R  LE  YQ+K+E  M+DENC            +LTIELL
Sbjct:   979 LAENNNGATGGQLNTQTSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELL 1036

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 312 (114.9 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
 Identities = 61/118 (51%), Positives = 83/118 (70%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   966 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1025

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   T   R  LE  YQ+K+E  M+DENC            +LTIELL
Sbjct:  1026 LAENNNGATGGQLNTQTSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELL 1083

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0051595 "response to methylglyoxal" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016580 "Sin3 complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

UNIPROTKB|J9P8L1 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
 Identities = 61/118 (51%), Positives = 83/118 (70%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   966 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLY 1025

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   T   R  LE  YQ+K+E  M+DENC            +LTIELL
Sbjct:  1026 LAENNNGATGGQLNTQTSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELL 1083

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1311598 Sin3a "SIN3 transcription regulator homolog A (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 309 (113.8 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
 Identities = 60/118 (50%), Positives = 83/118 (70%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+++LDGN++S+ YED+LRE+F IHAYIAFT+DK++ + VRQLQH+VSDE C++  + +
Sbjct:   966 MVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEVCVQVTDLY 1025

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E+  GATGG   +   R  LE  YQ+K+E  M+DENC            +LTIELL
Sbjct:  1026 LAENNNGATGGQLSSQTSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELL 1083

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0000785 "chromatin" evidence=IDA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IEA;ISO

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0002218 "activation of innate immune response" evidence=ISO

GO:0002230 "positive regulation of defense response to virus by host" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006476 "protein deacetylation" evidence=ISO

GO:0007568 "aging" evidence=IDA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010243 "response to organic nitrogen" evidence=IDA

GO:0016580 "Sin3 complex" evidence=IEA;ISO

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0031937 "positive regulation of chromatin silencing" evidence=ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0033558 "protein deacetylase activity" evidence=ISO

GO:0034613 "cellular protein localization" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043619 "regulation of transcription from RNA polymerase II promoter in response to oxidative stress" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA;ISO

GO:0051595 "response to methylglyoxal" evidence=IEA;ISO

GO:0071333 "cellular response to glucose stimulus" evidence=IEA;ISO

GO:1900181 "negative regulation of protein localization to nucleus" evidence=ISO

GO:1901675 "negative regulation of histone H3-K27 acetylation" evidence=ISO

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=ISO

ZFIN|ZDB-GENE-030131-2066 sin3ab "SIN3 homolog A, transcription regulator (yeast) b" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
 Identities = 59/118 (50%), Positives = 79/118 (66%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+N+LDGNME++ YED LRE+F IHAYIAFT+DK++ + VRQLQH+VSD+ C++  + +
Sbjct:   959 MVRNLLDGNMETSQYEDQLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDDICVQVTDLY 1018

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXXD--CKLTIELL 116
             L E    ATGG   T   R + E  YQ+KSE  M+DENC            +L +ELL
Sbjct:  1019 LSECANKATGGSLSTQSSRSNAETSYQRKSEQLMSDENCFKLLFQKSKGTVQLAVELL 1076

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 60/118 (50%), Positives = 81/118 (68%)

Query:     1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETF 60
             MV+N+LDGNME++ YED+LRE+F IHAYIAFT+DK++ N  RQLQH+VS+E C++  E +
Sbjct:   972 MVRNLLDGNMEASQYEDSLREMFTIHAYIAFTMDKLIQNIARQLQHIVSEEICVQVTELY 1031

Query:    61 LKESKKGATGGLCETAHQRVHLEQGYQKKSEVAMTDENCXXXXXXXX--DCKLTIELL 116
             L ES   +TGG   T   R   E  YQ+K+E  M+DENC          + +LT+ELL
Sbjct:  1032 LVESGHSSTGGSLLTQSSRAQAEASYQRKAEQLMSDENCFKLMFLKSRGNVQLTVELL 1089

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
COG5602	1163	SIN3 Histone deacetylase complex, SIN3 component [	99.94

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]

Probab=99.94  E-value=4.9e-27  Score=229.18  Aligned_cols=153  Identities=18%  Similarity=0.233  Sum_probs=136.8

Q ss_pred             ChhccccCCCCchhhHHHHHHhhccceeeeeeHHHHHHHHHHhhhHhhcccchHHHHHHHHHHhhcCCCCCCcchhhhhh
Q psy3869           1 MVKNVLDGNMESNSYEDTLRELFGIHAYIAFTLDKIVSNAVRQLQHLVSDETCIECYETFLKESKKGATGGLCETAHQRV   80 (203)
Q Consensus         1 m~~~LldG~iD~~~FED~lR~~fg~~AY~LfTiDKLI~~lvKqlq~ivsD~~s~ell~Lf~~eR~~~~tg~~~st~~~r~   80 (203)
                      ||++|+.|.+++.+||+.||.+|++++|++||||||.++|+||+|+|+.|.|...++.||..++..+.+         +.
T Consensus       906 ~s~rli~g~l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k---------~~  976 (1163)
T COG5602         906 DSYRLIFGALTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSK---------RK  976 (1163)
T ss_pred             HHHHHHhccccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcC---------cc
Confidence            588999999999999999999999999999999999999999999999999999999999999886433         23


Q ss_pred             hhHHHHHHHHHHhc-CCCCeEEEEEecCCCEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhhhhHhhhc
Q psy3869          81 HLEQGYQKKSEVAM-TDENCFKIIIFKKDCKLTIELLDTESSDNEGEDNDNDNDEDKDDNEHDPDQSTQDSEKWSPYEEE  159 (203)
Q Consensus        81 ~~ei~Yr~~ae~ll-~Den~fRI~~~~~~~~ltIqLl~~dd~t~~~~~~~~~~de~~d~~~~~~~~~~~~~ekW~~Yv~s  159 (203)
                      +.++.||.+||++| ++++||||.|.+..++++||.|.++|.|++                    +.+.....|.|||+|
T Consensus       977 ~dq~~yrl~ves~l~p~e~~Fr~~w~~~~k~~~Iq~~~~adLt~~--------------------~~~~~~~~wkyYV~s 1036 (1163)
T COG5602         977 QDQTKYRLEVESLLNPDEILFRFCWINKFKSFGIQIMKRADLTVD--------------------QSLDTQRVWKYYVQS 1036 (1163)
T ss_pred             chhhHHHHHHHHhcCchhheeeeeecchhheeeeeEeeccccccc--------------------cccChHHHHHHHHHh
Confidence            68999999999999 999999999999999999999999999991                    123555589999999


Q ss_pred             cCCCCCCChhcccccccCCcCCCC
Q psy3869         160 PFPERNTAPANEETLVEPKVESEP  183 (203)
Q Consensus       160 y~~~~~t~~~~~~~l~~k~~~~~~  183 (203)
                      |...++|+|....++ .-|++.|+
T Consensus      1037 Yai~h~TEgi~~~~~-k~PFL~R~ 1059 (1163)
T COG5602        1037 YAIQHLTEGISYKNY-KCPFLCRN 1059 (1163)
T ss_pred             hccccccccCchhhc-cchHHHHH
Confidence            999999998888887 44555444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00