Psyllid ID: psy3939

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MVTYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE
Secondary Structure (PSIPRED)
ccccccEEEcccccEEEEEEEccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccHHHHHHcccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccc
Coil and Loop (DISEMBL)
mvtylpsvktpggrlVYHYLKkagkvprcghckiklpgiEKARSIERSRMSRRRKMVKRsyggvlchkcvkeKFIYCFFYShckiklpgiEKARSIERSRMSRRRKMVKRsyggvlchkcvke
Flexible Loop (DISEMBL)
mvtylpsvktpggrLVYHYLKkagkvprcghckiklpgiekarsiersrmsrrrkmvkrsyggvlchkcVKEKFIYCFFYSHckiklpgiekarsiersrmsrrrkmvkrsyggvlchkcvke
Low Complexity Region (SEG)
MVTYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKArsiersrmsrrrkmvkrsYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKArsiersrmsrrrkmvkrsYGGVLCHKCVKE
Disordered region (IsUnstruct)
********KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIE****************VKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIE*******************SYGGVLCHKC***
Disordered Region (DISOPRED)
**TYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERS********VKRSYGGVLCHKCVKEKFIYCFFYSHCKI****************************GVLCHKCVK*
Disordered Region (DISEMBL)
MVTYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE
Disordered Region (DISPRO)
MVTYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTYLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
P45842	130	60S ribosomal protein L34	N/A	N/A	0.634	0.6	0.551	1e-18
Q9NB34	139	60S ribosomal protein L34	N/A	N/A	0.634	0.561	0.551	2e-18
Q54LV8	122	60S ribosomal protein L34	yes	N/A	0.626	0.631	0.467	1e-14
P0DJ23	123	60S ribosomal protein L34	N/A	N/A	0.634	0.634	0.437	8e-12
O42846	112	60S ribosomal protein L34	yes	N/A	0.634	0.696	0.397	3e-11
Q9URT8	111	60S ribosomal protein L34	no	N/A	0.634	0.702	0.397	5e-11
P41098	120	60S ribosomal protein L34	N/A	N/A	0.707	0.725	0.428	8e-11
P40590	120	60S ribosomal protein L34	N/A	N/A	0.634	0.65	0.45	1e-10
Q42351	120	60S ribosomal protein L34	yes	N/A	0.634	0.65	0.45	2e-10
Q9FE65	119	60S ribosomal protein L34	yes	N/A	0.634	0.655	0.437	2e-10

>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 55/78 (70%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGGRLVY Y+KK   VP+CG CK KL GI+ +R  ER RM RR K V R++GGVLCH
Sbjct: 23  VRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           +C++E+ I  F     K+
Sbjct: 83  RCLRERIIRAFLIDEQKV 100

Aedes albopictus (taxid: 7160)

>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 55/78 (70%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGGRLVY Y+KK   VP+CG CK KL GI+ +R  ER RM RR K V R++GGVLCH
Sbjct: 23  VRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           +C++E+ I  F     K+
Sbjct: 83  RCLRERIIRAFLIDEQKV 100

Aedes triseriatus (taxid: 7162)

>sp|Q54LV8|RL34_DICDI 60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 46/77 (59%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
          VKTPGGRLVY Y+ K GKVPRCG C + L GI   R  +   + + R+ V R+YGG  C 
Sbjct: 23 VKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYKNLPKSRRTVSRAYGGSKCA 82

Query: 68 KCVKEKFIYCFFYSHCK 84
          KCV+ + +  F     K
Sbjct: 83 KCVRNRIVRAFLIEEQK 99

Dictyostelium discoideum (taxid: 44689)

>sp|P0DJ23|RL34_TETTS 60S ribosomal protein L34 OS=Tetrahymena thermophila (strain SB210) GN=RPL34 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGH--CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVL 65
           VKTPGGRLV  Y+KK     +C    C + L GI + R  E + ++R  K V R YGG L
Sbjct: 23  VKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGEL 82

Query: 66  CHKCVKEKFIYCFFYSHCKI 85
           CH CV+ + I  F     KI
Sbjct: 83  CHTCVRSRIIRAFLTEEVKI 102

Tetrahymena thermophila (strain SB210) (taxid: 312017)

>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34a PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           +KTPG  + Y ++KK G +PRCG   + L GI   R  E +R+S  +K V+R+YGG L  
Sbjct: 23  IKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSA 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
             VK++ +  F     KI
Sbjct: 83  NAVKDRIVRAFLIEEQKI 100

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34b PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           +KTPG  + Y ++KK G +PRCG   + L GI   R  E +R+S  +K V+R+YGG L  
Sbjct: 23  IKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSA 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
             VK++ +  F     KI
Sbjct: 83  NAVKDRIVRAFLIEEQKI 100

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P41098|RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
           VKTPGG+L+Y   KK    P+C     ++ GI   R  E  RSR+SR R+ V R+YGGVL
Sbjct: 23  VKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82

Query: 66  CHKCVKEKFIYCFFYSHCKI--KLPGIEKAR 94
               V+E+ I  F     KI  K+  I+KA+
Sbjct: 83  SGSAVRERIIRAFLVEEQKIVKKVLKIQKAK 113

Nicotiana tabacum (taxid: 4097)

>sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
           VKTPGG+LVY   KK    P+C     ++ GI   R  E  RSR+SR R+ V R+YGGVL
Sbjct: 23  VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82

Query: 66  CHKCVKEKFIYCFFYSHCKI 85
               V+E+ I  F     KI
Sbjct: 83  SGGAVRERIIRAFLVEEQKI 102

Pisum sativum (taxid: 3888)

>sp|Q42351|RL341_ARATH 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
           VKTPGG+LVY   KK    P+C     ++ GI   R  E  RSR+SR R+ V R+YGGVL
Sbjct: 23  VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVL 82

Query: 66  CHKCVKEKFIYCFFYSHCKI 85
               V+E+ I  F     KI
Sbjct: 83  SGSAVRERIIRAFLVEEQKI 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
           VKTPGG+L Y   KK    P+C     ++ GI   R  E  RSR+SR R+ V R+YGGVL
Sbjct: 23  VKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82

Query: 66  CHKCVKEKFIYCFFYSHCKI 85
               V+E+ I  F     KI
Sbjct: 83  SGSAVRERIIRAFLVEEQKI 102

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
110671430	119	putative ribosomal protein L34 [Diaphori	0.601	0.621	0.884	5e-24
91088833	115	PREDICTED: similar to RpL34b CG9354-PA [	0.682	0.730	0.588	2e-21
383854515	116	PREDICTED: 60S ribosomal protein L34-lik	0.601	0.637	0.65	2e-21
326495788	119	predicted protein [Hordeum vulgare subsp	0.715	0.739	0.542	2e-21
307195690	119	60S ribosomal protein L34 [Harpegnathos	0.585	0.605	0.653	2e-21
332031366	119	60S ribosomal protein L34 [Acromyrmex ec	0.585	0.605	0.653	3e-21
322797534	119	hypothetical protein SINV_03395 [Solenop	0.585	0.605	0.653	3e-21
307187786	119	60S ribosomal protein L34 [Camponotus fl	0.585	0.605	0.653	3e-21
332374976	115	unknown [Dendroctonus ponderosae]	0.585	0.626	0.653	4e-21
156542759	119	PREDICTED: 60S ribosomal protein L34-lik	0.585	0.605	0.641	4e-21

>gi|110671430|gb|ABG81966.1| putative ribosomal protein L34 [Diaphorina citri]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 70/78 (89%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH
Sbjct: 23  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKEK +  F     KI
Sbjct: 83  KCVKEKIVRAFLIEEQKI 100

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088833|ref|XP_970537.1| PREDICTED: similar to RpL34b CG9354-PA [Tribolium castaneum] gi|270011606|gb|EFA08054.1| hypothetical protein TcasGA2_TC005648 [Tribolium castaneum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGGRLVY YLKK  K+PRCG CK KL GI  ARS ERSR+ RR+K VKR+YGGVLCH
Sbjct: 23  VRTPGGRLVYQYLKKPKKIPRCGQCKDKLRGILPARSQERSRLCRRKKTVKRAYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKIKLPGIEKARSIE 97
           KCVKEK +  F     KI +  ++  ++++
Sbjct: 83  KCVKEKIVRAFLIEEQKIVVKVLKAQQAVK 112

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854515|ref|XP_003702766.1| PREDICTED: 60S ribosomal protein L34-like [Megachile rotundata]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 60/80 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKIKL 87
           KCVKE+ +  F     KI L
Sbjct: 83  KCVKERIVRAFLIEEQKIVL 102

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326495788|dbj|BAJ85990.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 70/94 (74%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGGRLVY YLKK  +VP+CG+CKIKL GI+ AR+IE+SRM +R+K VKR+YGGVLCH
Sbjct: 23  VRTPGGRLVYQYLKKPKRVPKCGNCKIKLHGIKPARAIEKSRMCKRKKTVKRAYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRM 101
            CV+EK +  F     KI +  +   +S  ++++
Sbjct: 83  SCVREKILRAFLVEEQKIVVKVLRSQKSSTKNKL 116

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307195690|gb|EFN77532.1| 60S ribosomal protein L34 [Harpegnathos saltator]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKE+ +  F     KI
Sbjct: 83  KCVKERIVRAFLIEEQKI 100

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031366|gb|EGI70879.1| 60S ribosomal protein L34 [Acromyrmex echinatior]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKE+ +  F     KI
Sbjct: 83  KCVKERIVRAFLIEEQKI 100

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797534|gb|EFZ19578.1| hypothetical protein SINV_03395 [Solenopsis invicta]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKE+ +  F     KI
Sbjct: 83  KCVKERIVRAFLIEEQKI 100

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187786|gb|EFN72752.1| 60S ribosomal protein L34 [Camponotus floridanus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKE+ +  F     KI
Sbjct: 83  KCVKERIVRAFLIEEQKI 100

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374976|gb|AEE62629.1| unknown [Dendroctonus ponderosae]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR  ERSR+ RR+K VKR+YGGVLCH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPQERSRLCRRKKTVKRAYGGVLCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKEK +  F     KI
Sbjct: 83  KCVKEKIVRAFLIEEQKI 100

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542759|ref|XP_001601949.1| PREDICTED: 60S ribosomal protein L34-like isoform 2 [Nasonia vitripennis]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 59/78 (75%)

Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
           V+TPGG+LVY YLKK  K+PRCG CK KL GI+ AR +ERSRM RR+K VKR YGGV+CH
Sbjct: 23  VRTPGGKLVYQYLKKPKKIPRCGQCKDKLRGIQPARPMERSRMCRRKKTVKRVYGGVMCH 82

Query: 68  KCVKEKFIYCFFYSHCKI 85
           KCVKE+ +  F     KI
Sbjct: 83  KCVKERIVRAFLIEEQKI 100

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0037686	168	RpL34b "Ribosomal protein L34b	0.634	0.464	0.448	3.8e-14
FB|FBgn0039406	162	RpL34a "Ribosomal protein L34a	0.634	0.481	0.448	4.9e-14
DICTYBASE|DDB_G0286389	122	rpl34 "S60 ribosomal protein L	0.626	0.631	0.415	3.9e-12
ASPGD|ASPL0000072709	116	AN4522 [Emericella nidulans (t	0.634	0.672	0.410	2.2e-11
UNIPROTKB|G4N5R0	116	MGG_05296 "60S ribosomal prote	0.634	0.672	0.346	2.2e-09
UNIPROTKB|E2R118	137	RPL34 "Uncharacterized protein	0.617	0.554	0.367	3.6e-09
WB|WBGene00004448	110	rpl-34 [Caenorhabditis elegans	0.634	0.709	0.384	3.6e-09
UNIPROTKB|F1ML72	128	RPL34 "Uncharacterized protein	0.626	0.601	0.341	1.6e-08
UNIPROTKB|P49207	117	RPL34 "60S ribosomal protein L	0.626	0.658	0.341	1.6e-08
UNIPROTKB|F2Z5B9	117	RPL34 "60S ribosomal protein L	0.626	0.658	0.341	1.6e-08

FB|FBgn0037686 RpL34b "Ribosomal protein L34b" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 35/78 (44%), Positives = 42/78 (53%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             V+TPGGRLVY Y+KK   VPRCG CK KL GI  +                  YGGVLCH
Sbjct:    23 VRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRTYGGVLCH 82

Query:    68 KCVKEKFIYCFFYSHCKI 85
              C++E+ +  F     KI
Sbjct:    83 SCLRERIVRAFLIEEQKI 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

FB|FBgn0039406 RpL34a "Ribosomal protein L34a" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/78 (44%), Positives = 42/78 (53%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             V+TPGGRLVY Y+KK   VPRCG CK KL GI  +                  YGGVLCH
Sbjct:    23 VRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITASRPSERPRMSKRLKTVSRTYGGVLCH 82

Query:    68 KCVKEKFIYCFFYSHCKI 85
              C++E+ +  F     KI
Sbjct:    83 SCLRERIVRAFLIEEQKI 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286389 rpl34 "S60 ribosomal protein L34" [Dictyostelium discoideum (taxid:44689)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/77 (41%), Positives = 37/77 (48%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             VKTPGGRLVY Y+ K GKVPRCG C + L GI                     YGG  C 
Sbjct:    23 VKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYKNLPKSRRTVSRAYGGSKCA 82

Query:    68 KCVKEKFIYCFFYSHCK 84
             KCV+ + +  F     K
Sbjct:    83 KCVRNRIVRAFLIEEQK 99

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000072709 AN4522 [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/78 (41%), Positives = 37/78 (47%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             VKTPGG L Y +LKK G  P+CG C IKLPGI                     YGG  C 
Sbjct:    24 VKTPGGELRYQHLKKQGTAPKCGDCGIKLPGIPALRPREYAQISRPKKNVSRAYGGSRCA 83

Query:    68 KCVKEKFIYCFFYSHCKI 85
              CVK++ +  F     KI
Sbjct:    84 GCVKDRIVRAFLIEEQKI 101

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|G4N5R0 MGG_05296 "60S ribosomal protein L34-B" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 27/78 (34%), Positives = 36/78 (46%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             +KTPGG L   ++KK G  P+CG C IKLPG+                     YGG  C 
Sbjct:    24 IKTPGGDLRILHIKKRGTAPKCGDCGIKLPGVPALRPREYAQISKPKKTVQRAYGGSRCG 83

Query:    68 KCVKEKFIYCFFYSHCKI 85
              CV+++ +  F     KI
Sbjct:    84 NCVRDRVVRAFLIEEQKI 101

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|E2R118 RPL34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 29/79 (36%), Positives = 39/79 (49%)

Query:     9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLC 66
             +TPG R+VY Y KK GK P+  CG C  +L G+                     YGG +C
Sbjct:    45 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKMKKHVSRAYGGSMC 104

Query:    67 HKCVKEKFIYCFFYSHCKI 85
              KCV+++ I C F+   KI
Sbjct:   105 AKCVRDR-IKCAFFIEQKI 122

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

WB|WBGene00004448 rpl-34 [Caenorhabditis elegans (taxid:6239)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 30/78 (38%), Positives = 36/78 (46%)

Query:     8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
             VKTPGGRLV  Y+KK G++P+C    +KL GI  A                  YGG L  
Sbjct:    23 VKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSP 82

Query:    68 KCVKEKFIYCFFYSHCKI 85
               VKE+    F     KI
Sbjct:    83 NAVKERITRAFLVEEQKI 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|F1ML72 RPL34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query:     9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLC 66
             +TPG R+VY Y KK GK P+  CG C  +L G+                     YGG +C
Sbjct:    35 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 94

Query:    67 HKCVKEKFIYCFFYSHCKI 85
              KCV+++    F     KI
Sbjct:    95 AKCVRDRIKRAFLIEEQKI 113

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P49207 RPL34 "60S ribosomal protein L34" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query:     9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLC 66
             +TPG R+VY Y KK GK P+  CG C  +L G+                     YGG +C
Sbjct:    24 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83

Query:    67 HKCVKEKFIYCFFYSHCKI 85
              KCV+++    F     KI
Sbjct:    84 AKCVRDRIKRAFLIEEQKI 102

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5B9 RPL34 "60S ribosomal protein L34" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query:     9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLC 66
             +TPG R+VY Y KK GK P+  CG C  +L G+                     YGG +C
Sbjct:    24 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83

Query:    67 HKCVKEKFIYCFFYSHCKI 85
              KCV+++    F     KI
Sbjct:    84 AKCVRDRIKRAFLIEEQKI 102

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2BME5	RL34_HYPBU	No assigned EC number	0.35	0.6422	0.7452	yes	N/A
P49207	RL34_HUMAN	No assigned EC number	0.4177	0.6260	0.6581	yes	N/A
Q7ZWJ7	RL34_DANRE	No assigned EC number	0.3723	0.7479	0.7863	yes	N/A
Q9FE65	RL342_ARATH	No assigned EC number	0.4375	0.6341	0.6554	yes	N/A
Q42351	RL341_ARATH	No assigned EC number	0.45	0.6341	0.65	yes	N/A
O42846	RL34A_SCHPO	No assigned EC number	0.3974	0.6341	0.6964	yes	N/A
Q54LV8	RL34_DICDI	No assigned EC number	0.4675	0.6260	0.6311	yes	N/A
P40525	RL34B_YEAST	No assigned EC number	0.4102	0.6341	0.6446	yes	N/A
Q9D1R9	RL34_MOUSE	No assigned EC number	0.4177	0.6260	0.6581	yes	N/A
P87262	RL34A_YEAST	No assigned EC number	0.4230	0.6341	0.6446	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam01199	94	pfam01199, Ribosomal_L34e, Ribosomal protein L34e	4e-23
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	7e-18
COG2174	93	COG2174, RPL34A, Ribosomal protein L34E [Translati	5e-15
PLN03166	96	PLN03166, PLN03166, 60S ribosomal protein L34; Pro	5e-11
PRK04059	88	PRK04059, rpl34e, 50S ribosomal protein L34e; Vali	5e-11

>gnl|CDD|201657 pfam01199, Ribosomal_L34e, Ribosomal protein L34e

 Score = 85.4 bits (212), Expect = 4e-23
 Identities = 40/71 (56%), Positives = 48/71 (67%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
          V+TPGGRLVYHY KK    P+CG C   L GI + R  E  R+S+ +K V R YGGVLCH
Sbjct: 23 VRTPGGRLVYHYEKKKPSKPKCGDCGKPLNGIPRLRPRELRRLSKTQKRVSRPYGGVLCH 82

Query: 68 KCVKEKFIYCF 78
          KCV+E+ I  F
Sbjct: 83 KCVRERIIRAF 93

Length = 94

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 73.2 bits (180), Expect = 7e-18
 Identities = 36/71 (50%), Positives = 46/71 (64%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
          VKTPGGRLV    KK    P+CG C   L GI+  R  E  ++SRR + V R+YGGVLCH
Sbjct: 23 VKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCH 82

Query: 68 KCVKEKFIYCF 78
          KCV+++ +  F
Sbjct: 83 KCVRDRIVRAF 93

Length = 135

>gnl|CDD|225085 COG2174, RPL34A, Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

 Score = 65.1 bits (159), Expect = 5e-15
 Identities = 35/78 (44%), Positives = 44/78 (56%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
          VKTPGGR V HY KK   +P+C  C   L GI + R  E  R+S+ +K  +R YGG LC 
Sbjct: 16 VKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCA 75

Query: 68 KCVKEKFIYCFFYSHCKI 85
           CV+E+    F     KI
Sbjct: 76 NCVRERIKRAFRIEEQKI 93

Length = 93

>gnl|CDD|178710 PLN03166, PLN03166, 60S ribosomal protein L34; Provisional

 Score = 54.6 bits (131), Expect = 5e-11
 Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
          VKTPGG+LVY   KK    P+C     ++ GI   R  E  RSR+SR R+ V R+YGGVL
Sbjct: 23 VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVL 82

Query: 66 CHKCVKEKFIYCF 78
              V+E+ I  F
Sbjct: 83 SGSAVRERIIRAF 95

Length = 96

>gnl|CDD|179734 PRK04059, rpl34e, 50S ribosomal protein L34e; Validated

 Score = 54.2 bits (131), Expect = 5e-11
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 8  VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
          V+TPGGR V HY +K     +C  C   L G+ + R +E  ++ +  K  +R YGG LC 
Sbjct: 16 VRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCP 75

Query: 68 KCVKEKFIY 76
          KC+K     
Sbjct: 76 KCLKRLIKA 84

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PTZ00074	135	60S ribosomal protein L34; Provisional	100.0
KOG1790|consensus	121		100.0
COG2174	93	RPL34A Ribosomal protein L34E [Translation, riboso	100.0
PLN03166	96	60S ribosomal protein L34; Provisional	100.0
PF01199	94	Ribosomal_L34e: Ribosomal protein L34e; InterPro:	100.0
PRK04059	88	rpl34e 50S ribosomal protein L34e; Validated	100.0
PRK04059	88	rpl34e 50S ribosomal protein L34e; Validated	99.51
PLN03166	96	60S ribosomal protein L34; Provisional	99.45
PTZ00074	135	60S ribosomal protein L34; Provisional	99.41
PF01199	94	Ribosomal_L34e: Ribosomal protein L34e; InterPro:	99.4
KOG1790|consensus	121		99.31
COG2174	93	RPL34A Ribosomal protein L34E [Translation, riboso	99.21

>PTZ00074 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=2.7e-45  Score=272.77  Aligned_cols=98  Identities=39%  Similarity=0.716  Sum_probs=93.3

Q ss_pred             eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhhcc
Q psy3939           4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHC   83 (123)
Q Consensus         4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee~   83 (123)
                      .++++|||||+|||||.+|+++.|+|||||.+|+||+++||.++++|++++|||||||||++||+||+|||++|||||||
T Consensus        19 k~r~vrTPGGrlV~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr~rIirAFLiEEq   98 (135)
T PTZ00074         19 KVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVRDRIVRAFLVEEQ   98 (135)
T ss_pred             eeEEEECCCCceEEEEeccCCCCCCCCCCCCccCCccCCchHHHHHccccCCCccCCCccchhHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhhhHHHHhc
Q psy3939          84 KIKLPGIEKARSIERSRM  101 (123)
Q Consensus        84 KivkkgVKakrp~ekkrl  101 (123)
                      |||+++++++...+++..
T Consensus        99 Kivkkv~k~~~~~~k~~~  116 (135)
T PTZ00074         99 KIVKQVLKEKAKQKKQKK  116 (135)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999887666543

>KOG1790|consensus

Probab=100.00  E-value=5.8e-40  Score=239.28  Aligned_cols=91  Identities=45%  Similarity=0.851  Sum_probs=87.8

Q ss_pred             eeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhhccc
Q psy3939           5 LPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCK   84 (123)
Q Consensus         5 ~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee~K   84 (123)
                      ++++|||||+||++|.||.++.|+|+||+..|+||+++||.++.+||++.|+|||+|||++|++||+|||++||||||||
T Consensus        20 ~r~vrTPg~~lv~q~~kK~~~~pkc~~c~~~l~Gi~~~RPk~~~rlsk~~KtVsRayGG~~ca~~vrerI~rAFLi~EQk   99 (121)
T KOG1790|consen   20 TRLVRTPGGRLVYQYVKKKAKLPKCGDCGMRLQGIPALRPKELMRLSKSHKTVSRAYGGVLCAKCVRERIIRAFLIEEQK   99 (121)
T ss_pred             cccccCCCceehhHhhHhhccCCCCCcCCcccCCCCCcCHHHHHHHhhhHHHhhhhccccchHHHHHHHHHHHHHhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhh
Q psy3939          85 IKLPGIEKARS   95 (123)
Q Consensus        85 ivkkgVKakrp   95 (123)
                      ||.+.++++..
T Consensus       100 IV~k~~~~~~~  110 (121)
T KOG1790|consen  100 IVKKVLKAQEA  110 (121)
T ss_pred             HHHHHHHHHHH
Confidence            99998887644

>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.2e-39  Score=224.79  Aligned_cols=82  Identities=43%  Similarity=0.732  Sum_probs=80.4

Q ss_pred             eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhhcc
Q psy3939           4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHC   83 (123)
Q Consensus         4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee~   83 (123)
                      .+++||||||++|+||+||+++.|+|++||.+|+||+++||.|+++||+++|+|+|||||++|++|++++|++|||+|||
T Consensus        12 rr~~vkTPgGr~v~h~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~~~i~~a~r~~~~   91 (93)
T COG2174          12 RRRYVKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVRERIKRAFRIEEQ   91 (93)
T ss_pred             eeEEEECCCCcEEEeeeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy3939          84 KI   85 (123)
Q Consensus        84 Ki   85 (123)
                      +|
T Consensus        92 ki   93 (93)
T COG2174          92 KI   93 (93)
T ss_pred             cC
Confidence            86

>PLN03166 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=4.4e-38  Score=222.78  Aligned_cols=76  Identities=42%  Similarity=0.716  Sum_probs=74.1

Q ss_pred             eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHh--hcccCccccccccCCccchhhHhhHHHHhhh
Q psy3939           4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERS--RMSRRRKMVKRSYGGVLCHKCVKEKFIYCFF   79 (123)
Q Consensus         4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~--~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL   79 (123)
                      .++++|||||+||+||+||+++.|+|||||.+|+||+++||.|++  +|+|++|+|||||||++||+||+|+|++|||
T Consensus        19 k~r~vkTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~Rp~~~~~~~lsK~~K~vsRaYGG~lc~~cvr~rIvrAFL   96 (96)
T PLN03166         19 QHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFL   96 (96)
T ss_pred             eeEEEECCCCcEEEEEeccCCCCCcCCCCCCccCCccCCChhhhhhhhcccCcCccccCcCCcccHHHHHHHHHHHhC
Confidence            368999999999999999999999999999999999999999997  8999999999999999999999999999998

>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.6e-38  Score=221.94  Aligned_cols=75  Identities=53%  Similarity=1.021  Sum_probs=61.1

Q ss_pred             eeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhh
Q psy3939           5 LPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFF   79 (123)
Q Consensus         5 ~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL   79 (123)
                      ++++|||||+|||||++|+++.|+|||||.+|+||+++||.|+++|+|++|||||||||++||+||+|+|++|||
T Consensus        20 ~~~vrTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cvr~rI~rAFL   94 (94)
T PF01199_consen   20 RRYVRTPGGRLVYHYIKKKPKKPKCGDCGKPLNGIPALRPVELRRLSKRQKTVSRAYGGSLCHKCVRERIKRAFL   94 (94)
T ss_dssp             SEEEE-SSSEEEEEE-S--TT--BSTSSS-BSSSS-SS-SSTTGTS-CHCH--CCTSSSS-HHHHHHHHHHHHHH
T ss_pred             EEEeEcCCCcEEEEeccccCCCCCcCccCCcccccccccHHHHhhcccCCCCCCCCCCccchHHHHHHHHHHHhC
Confidence            679999999999999999999999999999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.

>PRK04059 rpl34e 50S ribosomal protein L34e; Validated

Probab=100.00  E-value=5.6e-35  Score=204.16  Aligned_cols=74  Identities=35%  Similarity=0.664  Sum_probs=72.0

Q ss_pred             eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHh
Q psy3939           4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYC   77 (123)
Q Consensus         4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~ra   77 (123)
                      .+++||||||+|||||.+|+++.|+|||||.+|+||+++||.|+++|+|++|+|||||||++||+||+|+|+.+
T Consensus        12 k~r~vrTPGGrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~Rp~~~~rlsK~~K~vsRaYGG~lc~~cvr~rI~~~   85 (88)
T PRK04059         12 RRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCPKCLKRLIKAK   85 (88)
T ss_pred             ceEEEECCCCCEEEEEeccCCCCCcCCCCCCccCCccCcchHHHHhcccccCCcccCcCceecHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999876

>PRK04059 rpl34e 50S ribosomal protein L34e; Validated

Probab=99.51  E-value=2.3e-15  Score=105.39  Aligned_cols=49  Identities=35%  Similarity=0.731  Sum_probs=45.7

Q ss_pred             cCCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          61 YGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        61 YGG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      -.++.|+.|-.              .|+||++.+|.++++|||++|||||||||++||+||+|
T Consensus        32 ~~~pkC~~c~~--------------~L~Gi~~~Rp~~~~rlsK~~K~vsRaYGG~lc~~cvr~   80 (88)
T PRK04059         32 PSKAKCAICGK--------------PLNGVPRGRPVEIRKLGKTEKRPERPYGGYLCPKCLKR   80 (88)
T ss_pred             CCCCcCCCCCC--------------ccCCccCcchHHHHhcccccCCcccCcCceecHHHHHH
Confidence            34667999998              99999999999999999999999999999999999986

>PLN03166 60S ribosomal protein L34; Provisional

Probab=99.45  E-value=1.4e-14  Score=102.87  Aligned_cols=48  Identities=42%  Similarity=0.702  Sum_probs=44.8

Q ss_pred             CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHH--hcccCCCccccccCCccccccccC
Q psy3939          62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERS--RMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekk--rl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      .++.|+.|-.              .|+||++.+|.+++  +|||++|+|||||||++||+||+|
T Consensus        40 ~~pkC~~cg~--------------~L~Gi~~~Rp~~~~~~~lsK~~K~vsRaYGG~lc~~cvr~   89 (96)
T PLN03166         40 SGPKCPVTGK--------------RIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRE   89 (96)
T ss_pred             CCCcCCCCCC--------------ccCCccCCChhhhhhhhcccCcCccccCcCCcccHHHHHH
Confidence            4567999999              99999999999997  899999999999999999999986

>PTZ00074 60S ribosomal protein L34; Provisional

Probab=99.41  E-value=3.4e-14  Score=106.20  Aligned_cols=48  Identities=50%  Similarity=0.981  Sum_probs=45.5

Q ss_pred             CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      .++.|+.|-.              .|+||++.+|.++++|++++|||||||||++||.||+|
T Consensus        40 ~~pkC~~cg~--------------~L~GI~~~Rp~e~~rlsK~~KtvsRaYGG~lC~~CVr~   87 (135)
T PTZ00074         40 SGPKCGDCGK--------------VLAGIKALRPTEYKQLSRRERTVSRAYGGVLCHKCVRD   87 (135)
T ss_pred             CCCCCCCCCC--------------ccCCccCCchHHHHHccccCCCccCCCccchhHHHHHH
Confidence            4677999999              99999999999999999999999999999999999985

>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.40  E-value=1.2e-14  Score=102.84  Aligned_cols=47  Identities=51%  Similarity=0.948  Sum_probs=36.7

Q ss_pred             CccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          63 GVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        63 G~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      ++.|+.|-+              .|+||++.+|.+.++|+|++|||||||||++||+||+|
T Consensus        41 ~pkC~~cg~--------------~L~Gi~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cvr~   87 (94)
T PF01199_consen   41 KPKCGDCGK--------------PLNGIPALRPVELRRLSKRQKTVSRAYGGSLCHKCVRE   87 (94)
T ss_dssp             --BSTSSS---------------BSSSS-SS-SSTTGTS-CHCH--CCTSSSS-HHHHHHH
T ss_pred             CCCcCccCC--------------cccccccccHHHHhhcccCCCCCCCCCCccchHHHHHH
Confidence            467999999              99999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.

>KOG1790|consensus

Probab=99.31  E-value=2.5e-13  Score=99.59  Aligned_cols=46  Identities=48%  Similarity=0.867  Sum_probs=42.6

Q ss_pred             ccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          64 VLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        64 ~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      +.|++|..              .++||.+.+|.+++++|+++|||||+|||++|++||+|
T Consensus        42 pkc~~c~~--------------~l~Gi~~~RPk~~~rlsk~~KtVsRayGG~~ca~~vre   87 (121)
T KOG1790|consen   42 PKCGDCGM--------------RLQGIPALRPKELMRLSKSHKTVSRAYGGVLCAKCVRE   87 (121)
T ss_pred             CCCCcCCc--------------ccCCCCCcCHHHHHHHhhhHHHhhhhccccchHHHHHH
Confidence            34777777              99999999999999999999999999999999999986

>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.4e-12  Score=90.71  Aligned_cols=49  Identities=39%  Similarity=0.697  Sum_probs=45.9

Q ss_pred             cCCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          61 YGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        61 YGG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      =+=+.|+.|.+              .|+||+..+|.+..++|+++|+|+|+|||++|+.||+|
T Consensus        32 ~~~p~C~~cg~--------------pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~~   80 (93)
T COG2174          32 PTIPKCAICGR--------------PLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVRE   80 (93)
T ss_pred             CCCCcccccCC--------------ccCCccCCCcHHHHhccccccCcCCCcCceecHHHHHH
Confidence            34578999999              99999999999999999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
4a18_L	123	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-08
3u5e_g	121	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-07
3izs_i	118	Localization Of The Large Subunit Ribosomal Protein		4e-07
3izr_i	119	Localization Of The Large Subunit Ribosomal Protein		1e-05

>pdb|4A18|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 123

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 8   VKTPGGRLVYHYLKKAGKVPRCGH--CKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVL 65
           VKTPGGRLV  Y+KK     +C    C + L GI +                   YGG L
Sbjct: 23  VKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGEL 82
Query: 66  CHKCVKEKFIYCFFYSHCKI 85
           CH CV+ + I  F     KI
Sbjct: 83  CHTCVRSRIIRAFLTEEVKI 102

>pdb|3U5E|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 121

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 32/78 (41%)
Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
           VKTPGG L   ++KK    P+CG C   L GI                     YGG  C 
Sbjct: 23  VKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCA 82
Query: 68  KCVKEKFIYCFFYSHCKI 85
            CVKE+ I  F     KI
Sbjct: 83  NCVKERIIRAFLIEEQKI 100

>pdb|3IZS|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 118

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 32/78 (41%)
Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKAXXXXXXXXXXXXXXXXXXYGGVLCH 67
           VKTPGG L   ++KK    P+CG C   L GI                     YGG  C 
Sbjct: 23  VKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCA 82
Query: 68  KCVKEKFIYCFFYSHCKI 85
            CVKE+ I  F     KI
Sbjct: 83  NCVKERIIRAFLIEEQKI 100

>pdb|3IZR|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 8   VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIE--KAXXXXXXXXXXXXXXXXXXYGGVL 65
           VKTPGG+LVY Y KK    P+C     K+ GI   +                   YGGVL
Sbjct: 23  VKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVL 82
Query: 66  CHKCVKEKFIYCFFYSHCKI 85
               V+E+ I  F     KI
Sbjct: 83  SGPAVRERIIRAFLVEEQKI 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	1e-15
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	2e-05
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	2e-15
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	2e-14
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	4e-07

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i Length = 121

 Score = 66.6 bits (162), Expect = 1e-15
 Identities = 33/79 (41%), Positives = 42/79 (53%)

Query: 7   SVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
            VKTPGG L   ++KK    P+CG C   L GI   R  + + +S+  K V R+YGG  C
Sbjct: 22  VVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRC 81

Query: 67  HKCVKEKFIYCFFYSHCKI 85
             CVKE+ I  F     KI
Sbjct: 82  ANCVKERIIRAFLIEEQKI 100

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i Length = 121

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 51  SRRRKMVKRSYGGVLCHKCVKE-KFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVK 109
           S + K+VK   G +      K      C     C   L GI   R  + + +S+  K V 
Sbjct: 17  SNKIKVVKTPGGILRAQHVKKLATRPKC---GDCGSALQGISTLRPRQYATVSKTHKTVS 73

Query: 110 RSYGGVLCHKCVKE 123
           R+YGG  C  CVKE
Sbjct: 74  RAYGGSRCANCVKE 87

>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4 Length = 123

 Score = 63.9 bits (155), Expect = 2e-14
 Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 7   SVKTPGGRLVYHYLKKAGKVPRCGH--CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGV 64
            VKTPGGRLV  Y+KK     +C    C + L GI + R  E + ++R  K V R YGG 
Sbjct: 22  KVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGE 81

Query: 65  LCHKCVKEKFIYCFFYSHCKI 85
           LCH CV+ + I  F     KI
Sbjct: 82  LCHTCVRSRIIRAFLTEEVKI 102

>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4 Length = 123

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 23/73 (31%), Positives = 34/73 (46%)

Query: 51  SRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKR 110
           S + + VK   G ++     K         + C + L GI + R  E + ++R  K V R
Sbjct: 17  SNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSR 76

Query: 111 SYGGVLCHKCVKE 123
            YGG LCH CV+ 
Sbjct: 77  VYGGELCHTCVRS 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	100.0
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	100.0
3iz5_i	119	60S ribosomal protein L34 (L34E); eukaryotic ribos	100.0
3j21_d	89	50S ribosomal protein L34E; archaea, archaeal, KIN	100.0
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	99.43
3iz5_i	119	60S ribosomal protein L34 (L34E); eukaryotic ribos	99.38
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	99.36
3j21_d	89	50S ribosomal protein L34E; archaea, archaeal, KIN	99.26

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i

Probab=100.00  E-value=2e-47  Score=278.76  Aligned_cols=96  Identities=34%  Similarity=0.613  Sum_probs=91.3

Q ss_pred             eeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhhccc
Q psy3939           5 LPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCK   84 (123)
Q Consensus         5 ~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee~K   84 (123)
                      ++++|||||+|||||.+|+++.|+|||||.+|+||+++||.++++|++++|+|||||||++||+||+|||++||||||||
T Consensus        20 ~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAFLiEEqK   99 (121)
T 3u5e_g           20 IKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQK   99 (121)
T ss_dssp             CCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhHHHHh
Q psy3939          85 IKLPGIEKARSIERSR  100 (123)
Q Consensus        85 ivkkgVKakrp~ekkr  100 (123)
                      ||+++++++...+++.
T Consensus       100 ivkkvlk~~~~~~k~~  115 (121)
T 3u5e_g          100 IVKKVVKEQTEAAKKS  115 (121)
T ss_dssp             HHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988765543

>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.7e-34  Score=201.12  Aligned_cols=74  Identities=30%  Similarity=0.617  Sum_probs=71.7

Q ss_pred             eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhh
Q psy3939           4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCF   78 (123)
Q Consensus         4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raF   78 (123)
                      .++++|||||+|||||+||+++.|+|||||.+|+||+++||.|+++|+|++|+|||||| ++||+||+|||++|-
T Consensus        11 k~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~rI~~~~   84 (89)
T 3j21_d           11 RRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRKVMKEQI   84 (89)
T ss_dssp             CEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999 999999999999874

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i

Probab=99.43  E-value=1e-14  Score=106.24  Aligned_cols=48  Identities=38%  Similarity=0.690  Sum_probs=45.1

Q ss_pred             CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      .++.|+.|-.              .|+||++.+|.++++||+++|||||||||++||+||+|
T Consensus        40 ~~pkCg~Cg~--------------~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~   87 (121)
T 3u5e_g           40 TRPKCGDCGS--------------ALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKE   87 (121)
T ss_dssp             CCCBCTTTCC--------------BCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHH
T ss_pred             CCCCCCCCCC--------------ccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHH
Confidence            4567999998              99999999999999999999999999999999999985

>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4

Probab=99.36  E-value=2.2e-14  Score=104.73  Aligned_cols=48  Identities=38%  Similarity=0.695  Sum_probs=44.9

Q ss_pred             CCccchhhH--hhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          62 GGVLCHKCV--KEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        62 GG~lC~~cv--r~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      .++.|+.|-  .              .|+||++.+|.++++||+++|||||||||++||.||+|
T Consensus        40 ~~pkCg~cg~~~--------------~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~   89 (123)
T 4a18_L           40 NYTKCSEAGCNV--------------ALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRS   89 (123)
T ss_dssp             CCCBCCSTTTCC--------------BCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHH
T ss_pred             CCCcCCCCCCcc--------------ccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHH
Confidence            356699998  8              99999999999999999999999999999999999985

>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.26  E-value=1.6e-13  Score=95.25  Aligned_cols=47  Identities=26%  Similarity=0.610  Sum_probs=44.1

Q ss_pred             CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939          62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE  123 (123)
Q Consensus        62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~  123 (123)
                      .++.|+.|-.              .|+||++.+|.++++|+|++|||||||| ++||+||+|
T Consensus        32 ~~pkC~~cg~--------------~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~   78 (89)
T 3j21_d           32 KIAHCAMCGR--------------PLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRK   78 (89)
T ss_dssp             CCCBCSSSCC--------------BCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred             CCCCCCCCCC--------------ccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHH
Confidence            4568999998              9999999999999999999999999999 999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00