Psyllid ID: psy3946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPPVLVAE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEcccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHccccccEEcccccccccccHHHHHHHHHcccccccccccHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEcEcccccccccccccHHHEEHHcccHHccccHHHHcccccccccccccccccccccccEccHHHHHHHHHHHcccccccccccccHcccHHHHHHHHHHHcccccccccEEEEcccccEEEcc
Coil and Loop (DISEMBL)
makisrvsiqnptpsnglseeVLSVLDFEKEERMNDVYNRnmkknfndtgvfqcpvpncnrvysrrRSLSRhrqecgqlprfhcslcpykskRRDLLKSHMkhghklehitedqiivrkdppvlvae
Flexible Loop (DISEMBL)
makisrvsiqnptpsnglseevLSVLDFEKEERMNDVYNRNMKKnfndtgvfqcpvpNCNRVYSRRRSLSrhrqecgqlprfhcslcpyKSKRRDLLKSHMKHGHklehitedqiivrkdppvlvae
Low Complexity Region (SEG)
MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPPVLVAE
Disordered region (IsUnstruct)
************************************VYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSL*RHRQECGQLPRFHCSLCPYKSKRRDLL*********LEHITEDQIIV**********
Disordered Region (DISOPRED)
*****************************************************CPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL********************
Disordered Region (DISEMBL)
MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSR**********CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPPVLVAE
Disordered Region (DISPRO)
*******SIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPPVLV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPPVLVAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q7KQZ4	787	Longitudinals lacking pro	yes	N/A	0.464	0.074	0.4	7e-08
Q9BE73	1081	Zinc finger protein 827 O	N/A	N/A	0.417	0.049	0.428	0.0003
Q17R98	1081	Zinc finger protein 827 O	yes	N/A	0.417	0.049	0.428	0.0003
Q505G8	1078	Zinc finger protein 827 O	yes	N/A	0.417	0.049	0.428	0.0003
Q10096	585	Zinc finger protein C11D3	yes	N/A	0.464	0.100	0.305	0.0006
P18146	543	Early growth response pro	no	N/A	0.559	0.130	0.364	0.0009

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 55  PVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED 113
           P P C RVY  + SL  H++ ECG+ P+F C  C Y++K++  +  HM+  HK +   ED
Sbjct: 686 PCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMHKEKFKLED 745

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|Q9BE73|ZN827_MACFA Zinc finger protein 827 OS=Macaca fascicularis GN=ZNF827 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 52  FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHK 106
           FQCP+  C  V  R+    RH      L    C LCP++  R+D LKSHMK H H+
Sbjct: 374 FQCPI--CGLVIKRKSYWKRHMVIHTGLKSHQCPLCPFRCARKDNLKSHMKVHQHQ 427

May be involved in transcriptional regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q17R98|ZN827_HUMAN Zinc finger protein 827 OS=Homo sapiens GN=ZNF827 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 52  FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHK 106
           FQCP+  C  V  R+    RH      L    C LCP++  R+D LKSHMK H H+
Sbjct: 374 FQCPI--CGLVIKRKSYWKRHMVIHTGLKSHQCPLCPFRCARKDNLKSHMKVHQHQ 427

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q505G8|ZN827_MOUSE Zinc finger protein 827 OS=Mus musculus GN=Znf827 PE=2 SV=2

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 52  FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHK 106
           FQCP+  C  V  R+    RH      L    C LCP++  R+D LKSHMK H H+
Sbjct: 371 FQCPI--CGLVIKRKSYWKRHMVIHTGLKSHQCPLCPFRCARKDNLKSHMKVHQHQ 424

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q10096|YAOH_SCHPO Zinc finger protein C11D3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.17 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 55  PVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED 113
           P   C + ++R  +L+RH+    +     C  C  K KR+DLLK H++  H  + + E+
Sbjct: 32  PCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKSVIEE 90

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sapiens GN=EGR1 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 30  KEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCP 88
           K  RM    NR  K   ++   + CPV +C+R +SR   L+RH R   GQ P F C +C 
Sbjct: 317 KPSRMRKYPNRPSKTPPHERP-YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICM 374

Query: 89  YKSKRRDLLKSHMK 102
               R D L +H++
Sbjct: 375 RNFSRSDHLTTHIR 388

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
242016989	432	BTB domain transcription factor, putativ	0.692	0.203	0.371	3e-07
157121098	731	lola [Aedes aegypti] gi|108874717|gb|EAT	0.614	0.106	0.361	2e-06
307206177	179	Zinc finger protein 64-like protein, iso	0.543	0.385	0.428	2e-06
255522795	411	longitudinals lacking isoform 1 [Triboli	0.614	0.189	0.380	4e-06
255522797	482	longitudinals lacking isoform 2 [Triboli	0.401	0.105	0.461	4e-06
24652482	787	longitudinals lacking, isoform C [Drosop	0.464	0.074	0.4	5e-06
29539411	786	Lola protein isoform L [Drosophila melan	0.464	0.075	0.4	5e-06
322794742	90	hypothetical protein SINV_01050 [Solenop	0.401	0.566	0.480	8e-06
328718738	169	PREDICTED: zinc finger protein 786-like	0.771	0.579	0.326	9e-06
407926245	441	Thioesterase superfamily [Macrophomina p	0.417	0.120	0.415	1e-05

>gi|242016989|ref|XP_002428977.1| BTB domain transcription factor, putative [Pediculus humanus corporis] gi|212513806|gb|EEB16239.1| BTB domain transcription factor, putative [Pediculus humanus corporis]

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 18  LSEEVLSVLD------FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSR 71
           LSE+ L V++        K  ++ +V +++ + N +D  ++ C    C   YS RR+L  
Sbjct: 335 LSEKCLKVVNQLDKNYIVKRPKIQNVVSKDSRSNLDDKKIYICL--KCGNKYSHRRTLLH 392

Query: 72  HRQE-CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL 107
           H    C Q   + CSLCPY+ KR+  LKSHMKH H L
Sbjct: 393 HIHWICEQPATYSCSLCPYRGKRKFQLKSHMKHAHLL 429

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121098|ref|XP_001659824.1| lola [Aedes aegypti] gi|108874717|gb|EAT38942.1| AAEL009212-PC [Aedes aegypti]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 42  MKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSH 100
           M  N    G F CP  +C RVY  + SL  H++ ECG+ P+F C  C Y++K++  +  H
Sbjct: 640 MDANGGSAGGFACP--DCGRVYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIGRH 697

Query: 101 MKHGHK--LEHITEDQIIVRKDP 121
           M+  HK     +  D++I  +DP
Sbjct: 698 MERMHKERFFKLEGDKVIALEDP 720

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206177|gb|EFN84257.1| Zinc finger protein 64-like protein, isoforms 1 and 2 [Harpegnathos saltator]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 38  YNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDL 96
           +N+  + N +D   F CP  NC+R +S +R+L+RH + ECG  PRF C  C Y SK +  
Sbjct: 96  WNKFQRSNDDDRIRFSCPNYNCSRAFSWKRNLTRHLKYECGLQPRFKCPYCDYYSKLKGN 155

Query: 97  LKSHMKHGHK 106
           LK H+   HK
Sbjct: 156 LKKHLIRRHK 165

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522795|ref|NP_001157310.1| longitudinals lacking isoform 1 [Tribolium castaneum]

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 20  EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQ 78
           E V +  D + +ER    + RNMK        ++CP   C ++Y  +++LSRH RQECG 
Sbjct: 324 EAVGAHRDSQGDERK---WGRNMKYPLFHYSQYKCP--RCCKIYHHKKTLSRHLRQECGL 378

Query: 79  LPRFHCSLCPYKSKRRDLLKSHMK 102
            P   C  CPY+++R  +L SH+K
Sbjct: 379 EPVLQCPHCPYRARRAYVLASHVK 402

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522797|ref|NP_001157311.1| longitudinals lacking isoform 2 [Tribolium castaneum]

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 57  PNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL 107
           PNC +VY+ R++L+RH   ECG+ P++ C  C YK+ RR+ +K H K+ H L
Sbjct: 428 PNCQKVYNARKNLARHVNSECGKEPQYSCPYCEYKNYRRNEIKKHAKNKHHL 479

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24652482|ref|NP_724946.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|78711864|ref|NP_724949.2| longitudinals lacking, isoform B [Drosophila melanogaster] gi|73920870|sp|Q7KQZ4.1|LOLA3_DROME RecName: Full=Longitudinals lacking protein, isoforms A/B/D/L gi|7303724|gb|AAF58773.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|71911713|gb|AAF58776.3| longitudinals lacking, isoform B [Drosophila melanogaster]

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 55  PVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED 113
           P P C RVY  + SL  H++ ECG+ P+F C  C Y++K++  +  HM+  HK +   ED
Sbjct: 686 PCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMHKEKFKLED 745

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29539411|dbj|BAC67588.1| Lola protein isoform L [Drosophila melanogaster] gi|29539451|dbj|BAC67608.1| Lola protein isoform L [Drosophila melanogaster] gi|29539491|dbj|BAC67628.1| Lola protein isoform L [Drosophila melanogaster] gi|29539531|dbj|BAC67648.1| Lola protein isoform L [Drosophila melanogaster]

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 55  PVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED 113
           P P C RVY  + SL  H++ ECG+ P+F C  C Y++K++  +  HM+  HK +   ED
Sbjct: 685 PCPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMHKEKFKLED 744

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794742|gb|EFZ17689.1| hypothetical protein SINV_01050 [Solenopsis invicta]

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 55  PVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
           P  NC +VYS   SL+RH + ECG  P+FHC LCPY++K +  L +H+   H
Sbjct: 16  PCRNCGKVYSYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRH 67

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718738|ref|XP_003246562.1| PREDICTED: zinc finger protein 786-like [Acyrthosiphon pisum]

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 3   KISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRV 62
           KI+  S+  P   N   +    + D   +   +D Y R+ + N +   +FQCP  +C++ 
Sbjct: 61  KIAPASVGIPALMN---QNFYDMQDSGSDASGHDGYGRHRRHNRDKEPIFQCP--DCDKR 115

Query: 63  YSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
           Y  + SLS H R ECG+ P F C  CP K+ ++  L+ H+K  H
Sbjct: 116 YRSKTSLSLHKRLECGKEPAFQCPYCPLKTHQKGNLQVHIKKKH 159

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407926245|gb|EKG19214.1| Thioesterase superfamily [Macrophomina phaseolina MS6]

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 50  GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
            VFQC  P C   Y R+  L+RH Q+  + P+F C+ C  K  RRD+L+ H++
Sbjct: 17  AVFQCTYPGCGSSYRRKEHLNRHAQQHTKEPKFVCTYCARKFFRRDILRRHLE 69

Source: Macrophomina phaseolina MS6

Species: Macrophomina phaseolina

Genus: Macrophomina

Family: Botryosphaeriaceae

Order: Botryosphaeriales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
WB|WBGene00022592	386	ZC328.2 [Caenorhabditis elegan	0.590	0.194	0.320	5.7e-07
UNIPROTKB|F1NSR5	1034	ZNF827 "Uncharacterized protei	0.511	0.062	0.4	1.3e-06
UNIPROTKB|F1NG63	1073	ZNF827 "Uncharacterized protei	0.511	0.060	0.4	1.4e-06
WB|WBGene00013970	543	ZK337.2 [Caenorhabditis elegan	0.582	0.136	0.361	1.6e-06
ZFIN|ZDB-GENE-080728-3	1150	znf827 "zinc finger protein 82	0.566	0.062	0.376	2.6e-06
UNIPROTKB|G5E9Z1	731	ZNF827 "Putative uncharacteriz	0.779	0.135	0.359	1.4e-05
UNIPROTKB|F1RS54	961	ZNF827 "Uncharacterized protei	0.795	0.105	0.348	1.5e-05
UNIPROTKB|Q26364	296	hkb "Hkb protein" [Drosophila	0.401	0.172	0.411	1.5e-05
FB|FBgn0261434	297	hkb "huckebein" [Drosophila me	0.401	0.171	0.411	1.5e-05
UNIPROTKB|E2QUK4	1079	ZNF827 "Uncharacterized protei	0.795	0.093	0.348	1.7e-05

WB|WBGene00022592 ZC328.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 25/78 (32%), Positives = 43/78 (55%)

Query:    29 EKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCP 88
             EK+ R  D+ +R+ +++  +   F+C   +C R +SR   L  HR+       +HC +C 
Sbjct:   253 EKDFRRPDILSRHTRRHTGEKP-FKCE--DCGRFFSRSDHLRTHRRTHTDEKPYHCCVCN 309

Query:    89 YKSKRRDLLKSHMKHGHK 106
             Y ++RRD+L  HM   H+
Sbjct:   310 YSARRRDVLTRHMSTRHQ 327

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NSR5 ZNF827 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query:    46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HG 104
             FND  +F C V  C +V+ R+++LSRH     +  ++ C LCPY +K R  L  H+  H 
Sbjct:   804 FNDQ-LFPCEV--CGKVFGRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTVHS 860

Query:   105 HKLEHI-TED 113
              KL    TED
Sbjct:   861 VKLVSTDTED 870

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NG63 ZNF827 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 28/70 (40%), Positives = 39/70 (55%)

Query:    46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HG 104
             FND  +F C V  C +V+ R+++LSRH     +  ++ C LCPY +K R  L  H+  H 
Sbjct:   804 FNDQ-LFPCEV--CGKVFGRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTVHS 860

Query:   105 HKLEHI-TED 113
              KL    TED
Sbjct:   861 VKLVSTDTED 870

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00013970 ZK337.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 30/83 (36%), Positives = 45/83 (54%)

Query:    35 NDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKR 93
             +D+  R+M+ +   TG      P CN+V+SR   LS H R   G+ P + C +C Y + R
Sbjct:   381 SDMLTRHMRLH---TGAKPYSCPTCNQVFSRSDHLSTHLRTHTGEKP-YACPMCNYSASR 436

Query:    94 RDLLKSHMKHGHKLEHITEDQII 116
             RD++  HM+  H L   T+D  I
Sbjct:   437 RDMISRHMRT-HSL---TDDSSI 455

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080728-3 znf827 "zinc finger protein 827" [Danio rerio (taxid:7955)]

 Score = 122 (48.0 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query:    51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEH 109
             +F CPV  C +V+ R+++LSRH     +  ++ C LCPY +K R  L  H+  H  KL +
Sbjct:   872 LFPCPV--CGKVFGRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTIHSVKLVN 929

Query:   110 ITEDQII--VRKDPPVL 124
                +QI+  V  D P L
Sbjct:   930 TDVEQIVTAVTNDGPEL 946

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G5E9Z1 ZNF827 "Putative uncharacterized protein LOC152485" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 41/114 (35%), Positives = 58/114 (50%)

Query:    10 QNPTPSNGLSEEVL---SVLDF-----EKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNR 61
             Q+P  SN  S+E+L   SVL       E E+ + +  N      FND  +F C V  C +
Sbjct:   420 QSPFTSN--SKELLPSDSVLHGRISAPETEKIVLEAGNGLPSWKFNDQ-LFPCDV--CGK 474

Query:    62 VYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHI-TED 113
             V+ R+++LSRH     +  ++ C LCPY +K R  L  H+  H  KL    TED
Sbjct:   475 VFGRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTVHSVKLVSTDTED 528

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RS54 ZNF827 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 114 (45.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 39/112 (34%), Positives = 55/112 (49%)

Query:    10 QNPTPSNGL----SEEVLS--VLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVY 63
             Q+P  SN      SE VL   +   E E+ + +  N      FND  +F C V  C +V+
Sbjct:   771 QSPFTSNSKDLLPSESVLHGRISAPETEKIVLEAGNGLPSWKFNDQ-LFPCDV--CGKVF 827

Query:    64 SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHI-TED 113
              R+++LSRH     +  ++ C LCPY +K R  L  H+  H  KL    TED
Sbjct:   828 GRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTVHSVKLVSTDTED 879

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q26364 hkb "Hkb protein" [Drosophila sp. (taxid:7242)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:    52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
             F+C V  C + ++R   L+RH++    L  + CS C  K  RRD LK HMK
Sbjct:   222 FKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPCSACGKKFGRRDHLKKHMK 272

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001706 "endoderm formation" evidence=TAS

GO:0001708 "cell fate specification" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=NAS

GO:0007362 "terminal region determination" evidence=TAS

GO:0007369 "gastrulation" evidence=NAS

GO:0007374 "posterior midgut invagination" evidence=NAS

GO:0007400 "neuroblast fate determination" evidence=TAS

GO:0007417 "central nervous system development" evidence=IGI

GO:0007419 "ventral cord development" evidence=TAS

GO:0007431 "salivary gland development" evidence=TAS

GO:0007435 "salivary gland morphogenesis" evidence=IGI;IMP;TAS

GO:0007492 "endoderm development" evidence=IMP

GO:0007499 "ectoderm and mesoderm interaction" evidence=NAS

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008293 "torso signaling pathway" evidence=TAS

GO:0008354 "germ cell migration" evidence=IMP;TAS

GO:0009948 "anterior/posterior axis specification" evidence=TAS

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0016044 "cellular membrane organization" evidence=IMP;TAS

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0261434 hkb "huckebein" [Drosophila melanogaster (taxid:7227)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:    52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
             F+C V  C + ++R   L+RH++    L  + CS C  K  RRD LK HMK
Sbjct:   223 FKCDVNTCGKTFTRNEELTRHKRIHTGLRPYPCSACGKKFGRRDHLKKHMK 273

GO:0007375 "anterior midgut invagination" evidence=NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007374 "posterior midgut invagination" evidence=NAS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007417 "central nervous system development" evidence=IGI

GO:0008354 "germ cell migration" evidence=IMP;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=NAS

GO:0009948 "anterior/posterior axis specification" evidence=TAS

GO:0007369 "gastrulation" evidence=NAS

GO:0008293 "torso signaling pathway" evidence=TAS

GO:0007362 "terminal region determination" evidence=TAS

GO:0001708 "cell fate specification" evidence=TAS

GO:0007435 "salivary gland morphogenesis" evidence=IGI;IMP;TAS

GO:0007499 "ectoderm and mesoderm interaction" evidence=NAS

GO:0001706 "endoderm formation" evidence=TAS

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0016044 "cellular membrane organization" evidence=IMP;TAS

GO:0007431 "salivary gland development" evidence=TAS

GO:0007419 "ventral cord development" evidence=TAS

GO:0007400 "neuroblast fate determination" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0007492 "endoderm development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|E2QUK4 ZNF827 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 39/112 (34%), Positives = 55/112 (49%)

Query:    10 QNPTPSNGL----SEEVLS--VLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVY 63
             Q+P  SN      SE VL   +   E E+ + +  N      FND  +F C V  C +V+
Sbjct:   768 QSPFTSNSKDLLPSENVLHGRISAPETEKIVLEAGNGLPSWKFNDQ-LFPCDV--CGKVF 824

Query:    64 SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHI-TED 113
              R+++LSRH     +  ++ C LCPY +K R  L  H+  H  KL    TED
Sbjct:   825 GRQQTLSRHLSLHTEERKYKCHLCPYAAKCRANLNQHLTVHSVKLVSTDTED 876

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	127
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	1e-04

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 19/77 (24%)

Query: 48  DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFH-------------------CSLCP 88
           D   ++CPV  CN+ Y  +  L  H     Q  + H                   C +C 
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405

Query: 89  YKSKRRDLLKSHMKHGH 105
            + K  + LK H KH H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG2462|consensus	279		99.74
KOG2462|consensus	279		99.66
KOG3576|consensus	267		99.57
KOG3623|consensus	1007		99.43
KOG3623|consensus	1007		99.3
KOG3576|consensus	267		99.19
KOG1074|consensus	958		98.95
PHA02768	55	hypothetical protein; Provisional	98.87
KOG1074|consensus	958		98.84
PHA00733	128	hypothetical protein	98.82
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.73
KOG3608|consensus	467		98.67
PHA00616	44	hypothetical protein	98.64
KOG3608|consensus	467		98.55
PHA02768	55	hypothetical protein; Provisional	98.25
PLN03086	567	PRLI-interacting factor K; Provisional	98.22
KOG3993|consensus	500		98.17
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.16
PHA00616	44	hypothetical protein	98.07
PHA00732	79	hypothetical protein	98.02
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.99
PHA00733	128	hypothetical protein	97.91
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.84
PLN03086	567	PRLI-interacting factor K; Provisional	97.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.64
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.54
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.52
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.38
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.35
smart00355	26	ZnF_C2H2 zinc finger.	97.09
PRK04860	160	hypothetical protein; Provisional	96.74
KOG3993|consensus	500		96.74
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.69
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.56
PHA00732	79	hypothetical protein	96.3
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.13
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.83
smart00355	26	ZnF_C2H2 zinc finger.	95.73
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.43
KOG2893|consensus	341		94.84
PRK04860	160	hypothetical protein; Provisional	94.84
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.43
COG5048	467	FOG: Zn-finger [General function prediction only]	94.04
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.97
KOG1146|consensus	1406		92.79
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.62
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	91.26
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	87.5
KOG2186|consensus	276		86.17
COG4049	65	Uncharacterized protein containing archaeal-type C	85.12
COG5189	423	SFP1 Putative transcriptional repressor regulating	82.99
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.27
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	81.48
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	80.49

>KOG2462|consensus

Probab=99.74  E-value=1.6e-18  Score=119.49  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=80.7

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ....+..|.+.+..-..|+-|++. |+  -++.|  .+|||.|.+.=.|+.|+++|||+|||.|..|+|+|.-+++|+.|
T Consensus       160 ka~~C~~C~K~YvSmpALkMHirT-H~--l~c~C--~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH  234 (279)
T KOG2462|consen  160 KAFSCKYCGKVYVSMPALKMHIRT-HT--LPCEC--GICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH  234 (279)
T ss_pred             ccccCCCCCceeeehHHHhhHhhc-cC--CCccc--ccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence            345667788888888888888765 76  36899  99999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCchhhh
Q psy3946         101 MKHGHKLEHITEDQII  116 (127)
Q Consensus       101 ~~~h~g~k~~~c~~~~  116 (127)
                      +++|.+.|+|.|..+.
T Consensus       235 mQTHS~~K~~qC~~C~  250 (279)
T KOG2462|consen  235 MQTHSDVKKHQCPRCG  250 (279)
T ss_pred             HHhhcCCccccCcchh
Confidence            9999999999997654

>KOG2462|consensus

Probab=99.66  E-value=3.5e-17  Score=112.92  Aligned_cols=78  Identities=17%  Similarity=0.344  Sum_probs=71.2

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHH
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      ..+..|.+.|...=.|+.|++. |+|||||.|  ..|++.|...++|+.|+++|.+.++|+|..|+|+|...+.|++|..
T Consensus       188 c~C~iCGKaFSRPWLLQGHiRT-HTGEKPF~C--~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  188 CECGICGKAFSRPWLLQGHIRT-HTGEKPFSC--PHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cccccccccccchHHhhccccc-ccCCCCccC--CcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            3566799998877777888765 999999999  9999999999999999999999999999999999999999999987


Q ss_pred             h
Q psy3946         103 H  103 (127)
Q Consensus       103 ~  103 (127)
                      .
T Consensus       265 S  265 (279)
T KOG2462|consen  265 S  265 (279)
T ss_pred             h
Confidence            4

>KOG3576|consensus

Probab=99.57  E-value=1.1e-15  Score=101.66  Aligned_cols=97  Identities=21%  Similarity=0.335  Sum_probs=85.7

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ..+++..|.+.|....-|++|++. |...+.|.|  ..||+.|...-.|++|+++|+|.+||+|..|+|+|.++-+|..|
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kc-h~~vkr~lc--t~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcslesh  192 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKC-HSDVKRHLC--TFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESH  192 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhh-ccHHHHHHH--hhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHH
Confidence            446677799999999999999998 999999999  99999999999999999999999999999999999999999999


Q ss_pred             HHhcCC-----------CCCCCchhhhhcCC
Q psy3946         101 MKHGHK-----------LEHITEDQIIVRKD  120 (127)
Q Consensus       101 ~~~h~g-----------~k~~~c~~~~~~~~  120 (127)
                      ++.-+|           +|.|-|.++-.+..
T Consensus       193 l~kvhgv~~~yaykerr~kl~vcedcg~t~~  223 (267)
T KOG3576|consen  193 LKKVHGVQHQYAYKERRAKLYVCEDCGYTSE  223 (267)
T ss_pred             HHHHcCchHHHHHHHhhhheeeecccCCCCC
Confidence            987665           46666766655443

>KOG3623|consensus

Probab=99.43  E-value=5.5e-14  Score=107.72  Aligned_cols=77  Identities=16%  Similarity=0.352  Sum_probs=70.7

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHH
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      +.|..|.+.|.-..+|.||.=. |+|.+||+|  .+|.|.|..+.+|..|.+.|.|++||+|..|+|.|+...++..|+-
T Consensus       895 yaCDqCDK~FqKqSSLaRHKYE-HsGqRPyqC--~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  895 YACDQCDKAFQKQSSLARHKYE-HSGQRPYQC--IICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             chHHHHHHHHHhhHHHHHhhhh-hcCCCCccc--chhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            4566699999999999999755 999999999  9999999999999999999999999999999999999999999885

>KOG3623|consensus

Probab=99.30  E-value=7.4e-13  Score=101.66  Aligned_cols=69  Identities=20%  Similarity=0.519  Sum_probs=64.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      .+...+|.|  ..|.|.|...+.|.+|.--|+|.+||+|..|.|.|.....|.-|.|.|.|||||.|+.+.
T Consensus       889 kte~gmyaC--DqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKCl  957 (1007)
T KOG3623|consen  889 KTEDGMYAC--DQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCL  957 (1007)
T ss_pred             cCccccchH--HHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhh
Confidence            344568999  999999999999999999999999999999999999999999999999999999998775

>KOG3576|consensus

Probab=99.19  E-value=4.4e-12  Score=84.64  Aligned_cols=67  Identities=21%  Similarity=0.356  Sum_probs=62.5

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      +...|.|  .+|+|.|.....|.+|++.|..-+.+-|..|||.|...-.|++|.++|+|.+||+|..+.
T Consensus       114 d~d~ftC--rvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~  180 (267)
T KOG3576|consen  114 DQDSFTC--RVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCE  180 (267)
T ss_pred             CCCeeee--ehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhh
Confidence            3556999  999999999999999999999999999999999999999999999999999999997654

>KOG1074|consensus

Probab=98.95  E-value=2.4e-10  Score=89.09  Aligned_cols=58  Identities=26%  Similarity=0.336  Sum_probs=43.6

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      |-+|  .+|.+++...+.|+.|.++|+|++||+|+.||+.|.++.+|+.|+.+|.-.-++
T Consensus       605 PNqC--iiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~  662 (958)
T KOG1074|consen  605 PNQC--IICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA  662 (958)
T ss_pred             ccce--eeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccc
Confidence            5577  777777777777888877888888888888888888888888777777654443

>PHA02768 hypothetical protein; Provisional

Probab=98.87  E-value=1.1e-09  Score=58.62  Aligned_cols=42  Identities=26%  Similarity=0.578  Sum_probs=37.8

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHH
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLL   97 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l   97 (127)
                      |.|  ..||+.|....+|..|+++|+  ++++|..|++.|.+.+.|
T Consensus         6 y~C--~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YEC--PICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCc--chhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            789  999999999999999999998  689999999999877655

>KOG1074|consensus

Probab=98.84  E-value=7.8e-10  Score=86.34  Aligned_cols=85  Identities=15%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC----ceecC---CCCccC
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP----RFHCS---LCPYKS   91 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~----~~~C~---~C~k~f   91 (127)
                      ..+...|.-|.+.-.+...|+-|++. |+|++||+|  .+||+.|..+.+|+.|+.+|....    ++.|+   .|-+.|
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrt-HtGERPFkC--KiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf  678 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRT-HTGERPFKC--KICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF  678 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhc-ccCcCcccc--ccccchhccccchhhcccccccCccccccccCCchhhhcccc
Confidence            33445677788888899999999976 999999999  999999999999999999887654    46788   888999


Q ss_pred             CChHHHHHHHHhcCC
Q psy3946          92 KRRDLLKSHMKHGHK  106 (127)
Q Consensus        92 ~~~~~l~~H~~~h~g  106 (127)
                      ...-.|..|++.|.+
T Consensus       679 tn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  679 TNAVTLPQHIRIHLG  693 (958)
T ss_pred             cccccccceEEeecC
Confidence            999999999999983

>PHA00733 hypothetical protein

Probab=98.82  E-value=1e-08  Score=64.90  Aligned_cols=58  Identities=21%  Similarity=0.360  Sum_probs=51.5

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +.+.+||.|  ..|++.|.....|..|++.+  ..+|.|..|++.|.....|..|+...++.
T Consensus        68 ~~~~kPy~C--~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         68 SKAVSPYVC--PLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             cCCCCCccC--CCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            456889999  99999999999999999876  35799999999999999999999877653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.73  E-value=8.6e-09  Score=47.35  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             HHHHHHHHcCCCCceecCCCCccCC
Q psy3946          68 SLSRHRQECGQLPRFHCSLCPYKSK   92 (127)
Q Consensus        68 ~l~~h~~~h~~~~~~~C~~C~k~f~   92 (127)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3677778888888888888887775

...

>KOG3608|consensus

Probab=98.67  E-value=1.8e-08  Score=72.41  Aligned_cols=92  Identities=17%  Similarity=0.315  Sum_probs=54.1

Q ss_pred             ccccccchhhHhHhhHHHHHhHHh-hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKK-NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      +++-+..|..-|..+..|-.|+++ +-....+|+|  ..|.|.|.....|..|+..|..  .|+|+.|.-+....+.|..
T Consensus       206 KvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC--~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~  281 (467)
T KOG3608|consen  206 KVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQC--AQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTT  281 (467)
T ss_pred             eEEecchHHHHhccccHHHHHHHhhhhhcCCchHH--HHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHH
Confidence            334444455555555444444322 1222345555  5555666655556666555533  4677777777777788888


Q ss_pred             HHHh-cCCCCCCCchhhh
Q psy3946         100 HMKH-GHKLEHITEDQII  116 (127)
Q Consensus       100 H~~~-h~g~k~~~c~~~~  116 (127)
                      |+++ |...|||+|++..
T Consensus       282 H~r~rHs~dkpfKCd~Cd  299 (467)
T KOG3608|consen  282 HIRYRHSKDKPFKCDECD  299 (467)
T ss_pred             HHHhhhccCCCccccchh
Confidence            8774 5678888887665

>PHA00616 hypothetical protein

Probab=98.64  E-value=1.4e-08  Score=51.96  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ||+|..||+.|.+.+.|..|++.|+|++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            577777777777777778888777777777664

>KOG3608|consensus

Probab=98.55  E-value=1.7e-07  Score=67.58  Aligned_cols=86  Identities=16%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             cccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCCCCccCCChHHHHHH
Q psy3946          22 VLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      .+.+..|.+.|.....|..|+.+ |..  -|.|  +.|.-.....+.|..|++ .|..++||+|..|.+.|...+.|++|
T Consensus       237 ~fqC~~C~KrFaTeklL~~Hv~r-Hvn--~ykC--plCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLKSHVVR-HVN--CYKC--PLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHH-hhh--cccc--cccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence            45566677777777777777655 443  3667  777777777777777766 46667777777777777777777777


Q ss_pred             HHhcCCCCCCCch
Q psy3946         101 MKHGHKLEHITED  113 (127)
Q Consensus       101 ~~~h~g~k~~~c~  113 (127)
                      ..+|. +-.|.|+
T Consensus       312 ~~~HS-~~~y~C~  323 (467)
T KOG3608|consen  312 VQVHS-KTVYQCE  323 (467)
T ss_pred             HHhcc-ccceecC
Confidence            77666 4445554

>PHA02768 hypothetical protein; Provisional

Probab=98.25  E-value=8.5e-07  Score=47.55  Aligned_cols=34  Identities=15%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcC-CCCCCCchh
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGH-KLEHITEDQ  114 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~-g~k~~~c~~  114 (127)
                      -|.|+.||+.|...+.|..|+++|+ +.+...|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k   39 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHNTNLKLSNCKR   39 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcCCcccCCcccc
Confidence            3899999999999999999999999 444444443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.22  E-value=2.4e-06  Score=65.68  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCC---------
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKR---------   93 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~---------   93 (127)
                      +.|..|...+. ...+..|+.. ++  .++.|  . |++.+ ....|..|+.+|.+.+++.|..|++.|..         
T Consensus       454 ~~C~~Cgk~f~-~s~LekH~~~-~H--kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d  525 (567)
T PLN03086        454 VHCEKCGQAFQ-QGEMEKHMKV-FH--EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD  525 (567)
T ss_pred             ccCCCCCCccc-hHHHHHHHHh-cC--CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh
Confidence            34555766664 4667888766 43  78999  7 99755 56789999999999999999999988842         


Q ss_pred             -hHHHHHHHHhcCCCCCCCchhh
Q psy3946          94 -RDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        94 -~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                       ...|..|...+ |.+++.|..+
T Consensus       526 ~~s~Lt~HE~~C-G~rt~~C~~C  547 (567)
T PLN03086        526 RLRGMSEHESIC-GSRTAPCDSC  547 (567)
T ss_pred             hhhhHHHHHHhc-CCcceEcccc
Confidence             35789998886 8899988544

>KOG3993|consensus

Probab=98.17  E-value=1.5e-06  Score=64.02  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=56.7

Q ss_pred             hhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC--------C-------------------
Q psy3946          28 FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL--------P-------------------   80 (127)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~--------~-------------------   80 (127)
                      |...+.-.--|.+|.-. -.-...|.|  ..|+|.|....+|..|.++|..+        .                   
T Consensus       273 CK~kYeD~F~LAQHrC~-RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg  349 (500)
T KOG3993|consen  273 CKEKYEDAFALAQHRCP-RIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSG  349 (500)
T ss_pred             HHHhhhhHHHHhhccCC-eeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccC
Confidence            33333333345555321 333456999  99999999999999999998421        1                   


Q ss_pred             ------ceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          81 ------RFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        81 ------~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                            -|.|..|+|.|.....|+.|+.+|+..
T Consensus       350 ~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  350 DDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             CcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                  278999999999999999999988753

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.16  E-value=1.7e-06  Score=39.55  Aligned_cols=26  Identities=23%  Similarity=0.694  Sum_probs=22.7

Q ss_pred             HHHHhHHhhcCCCcceeCCCCCCCccccC
Q psy3946          37 VYNRNMKKNFNDTGVFQCPVPNCNRVYSR   65 (127)
Q Consensus        37 ~~~~~~~~~h~~~~p~~C~~~~C~~~f~~   65 (127)
                      +|.+|++. |++++||.|  ..|++.|..
T Consensus         1 ~l~~H~~~-H~~~k~~~C--~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT-HTGEKPYKC--PYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH-HSSSSSEEE--SSSSEEESS
T ss_pred             CHHHHhhh-cCCCCCCCC--CCCcCeeCc
Confidence            47889876 999999999  999999863

...

>PHA00616 hypothetical protein

Probab=98.07  E-value=1.7e-06  Score=44.31  Aligned_cols=34  Identities=12%  Similarity=0.487  Sum_probs=31.4

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      ||+|  ..||+.|...+.+..|++.|+++.++.|..
T Consensus         1 pYqC--~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQC--LRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCcc--chhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899  999999999999999999999999988764

>PHA00732 hypothetical protein

Probab=98.02  E-value=4.7e-06  Score=48.36  Aligned_cols=46  Identities=22%  Similarity=0.477  Sum_probs=37.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCCCCccCCChHHHHHHHHhc
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      ||.|  ..|++.|.....|..|++ .|.+   +.|..|++.|.   .+..|..+.
T Consensus         1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKC--PICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccC--CCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhccc
Confidence            5789  999999999999999998 4653   58999999997   467777543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.99  E-value=2.4e-06  Score=60.96  Aligned_cols=54  Identities=28%  Similarity=0.565  Sum_probs=46.5

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHH-cC------------------CCCceecCCCCccCCChHHHHHHHH
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQE-CG------------------QLPRFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~-h~------------------~~~~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      ++||.||...|.|.+..+.-|+.|+.. |.                  ..+||+|.+|+|.+.....|+.|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            599999999999999999999999862 30                  2389999999999999999988865

>PHA00733 hypothetical protein

Probab=97.91  E-value=6.4e-06  Score=52.17  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=48.8

Q ss_pred             CcceeCCCCCCCccccCchHHHHH--HH---HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRH--RQ---ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h--~~---~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .+++.|  ..|.+.|.....|..+  ..   .+.+.+||.|..|++.|.....|..|++.+  +.++.|...
T Consensus        38 ~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~C  105 (128)
T PHA00733         38 QKRLIR--AVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVC  105 (128)
T ss_pred             hhhHHH--HHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCC
Confidence            456889  8898888877766665  11   334578999999999999999999999976  456777654

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.84  E-value=1.3e-05  Score=35.26  Aligned_cols=22  Identities=27%  Similarity=0.700  Sum_probs=14.1

Q ss_pred             eecCCCCccCCChHHHHHHHHh
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      |.|..|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.76  E-value=4.7e-05  Score=58.77  Aligned_cols=60  Identities=15%  Similarity=0.368  Sum_probs=50.9

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .+.|.|  ..|++.|. ...+..|+..|.  +++.|+ |++.+ ....|..|+.+|-+++++.|.-+
T Consensus       451 ~~H~~C--~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC  510 (567)
T PLN03086        451 KNHVHC--EKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFC  510 (567)
T ss_pred             ccCccC--CCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCC
Confidence            456789  99999996 577999999874  789999 99755 67899999999999999999744

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.64  E-value=5.2e-05  Score=33.34  Aligned_cols=24  Identities=29%  Similarity=0.765  Sum_probs=15.6

Q ss_pred             eecCCCCccCCChHHHHHHHHhcC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      |.|..|++.|.....|..|++.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777653

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.54  E-value=6e-05  Score=34.48  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +|.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4667777777777777777776654

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.52  E-value=0.00026  Score=38.01  Aligned_cols=51  Identities=27%  Similarity=0.563  Sum_probs=39.4

Q ss_pred             ceeCCCCCCCccccCchHHHHHHH-HcCCC-CceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQ-ECGQL-PRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~-~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      .|.|  +.|++ ......|..|.. .|..+ +.+.|+.|...+.  .+|..|+..+++
T Consensus         2 ~f~C--P~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTC--PYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCC--CCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            4889  99999 455678999976 56654 5799999987544  489999988764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.38  E-value=0.00014  Score=31.86  Aligned_cols=23  Identities=30%  Similarity=0.879  Sum_probs=21.0

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHc
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      |.|  ..|++.|.....|..|++.|
T Consensus         1 y~C--~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKC--PICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHHHH
T ss_pred             CCC--CCCCCccCCHHHHHHHHhHC
Confidence            689  99999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.35  E-value=0.00026  Score=37.17  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=22.2

Q ss_pred             CCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          78 QLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        78 ~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      ...|-.|+.|+..+.+..+|.+|++++++.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45678899999888888999999988888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.09  E-value=0.00069  Score=29.97  Aligned_cols=24  Identities=29%  Similarity=0.570  Sum_probs=16.4

Q ss_pred             eecCCCCccCCChHHHHHHHHhcC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            456777777777777777776543

>PRK04860 hypothetical protein; Provisional

Probab=96.74  E-value=0.0016  Score=42.77  Aligned_cols=36  Identities=17%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSK   92 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~   92 (127)
                      +|.|  . |+.   ....+..|.++|++.++|.|..|+..|.
T Consensus       119 ~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEc--C-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            3555  4 554   3334555555555555555555555443

>KOG3993|consensus

Probab=96.74  E-value=0.00019  Score=53.17  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      .|.|  +.|.-.|-..-.|.+|....-...-|+|+.|+|.|+...+|..|+|-|.
T Consensus       267 dyiC--qLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  267 DYIC--QLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHH--HHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence            4889  9999999999999999875555667999999999999999999999774

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.69  E-value=0.0011  Score=30.10  Aligned_cols=25  Identities=24%  Similarity=0.671  Sum_probs=22.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      ||.|  ..|++.|.....|..|++.|.
T Consensus         1 ~~~C--~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFEC--DECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEE--TTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCC--CccCCccCChhHHHHHhHHhc
Confidence            5899  999999999999999998663

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.68  E-value=0.0013  Score=29.06  Aligned_cols=24  Identities=33%  Similarity=0.845  Sum_probs=16.9

Q ss_pred             eecCCCCccCCChHHHHHHHHhcCC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      |+|..|++... ...|..|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888887777 7788888887653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.56  E-value=0.0026  Score=27.57  Aligned_cols=23  Identities=30%  Similarity=0.821  Sum_probs=19.0

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHc
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      |.|  ..|++.|.....|..|+..+
T Consensus         1 ~~C--~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQC--PICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE---SSTS-EESSHHHHHHHHHHH
T ss_pred             CCC--cCCCCcCCcHHHHHHHHHhh
Confidence            689  99999999999999998864

...

>PHA00732 hypothetical protein

Probab=96.30  E-value=0.005  Score=35.70  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=23.5

Q ss_pred             ceecCCCCccCCChHHHHHHHHh-cCCC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKH-GHKL  107 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~-h~g~  107 (127)
                      ||.|..|++.|.+...|..|++. |.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~   28 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLT   28 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCC
Confidence            58999999999999999999985 6543

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.13  E-value=0.0067  Score=35.96  Aligned_cols=72  Identities=21%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             cchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          26 LDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      .-|...+.....+..|+...|.-..+-.       ..+.....+..+.... ....+.|..|++.|.....|..|++.+.
T Consensus         3 ~~C~~~f~~~~~l~~H~~~~H~~~~~~~-------~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    3 LFCDESFSSVDDLLQHMKKKHGFDIPDQ-------KYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccc-------cccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            3456666666777777766554432210       1111222222232211 1236999999999999999999999753

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.83  E-value=0.0063  Score=26.94  Aligned_cols=21  Identities=24%  Similarity=0.702  Sum_probs=13.1

Q ss_pred             eecCCCCccCCChHHHHHHHH
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      |.|..|.+.|.....|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            456666666666666666655

>smart00355 ZnF_C2H2 zinc finger

Probab=95.73  E-value=0.012  Score=25.74  Aligned_cols=24  Identities=25%  Similarity=0.851  Sum_probs=21.0

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      |.|  ..|++.|.....+..|++.|.
T Consensus         1 ~~C--~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRC--PECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCC--CCCcchhCCHHHHHHHHHHhc
Confidence            568  999999999999999998664

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.43  E-value=0.024  Score=29.85  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=23.7

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCc
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      +..+.|..|  +.|+..+....+|.+|+..+.+.+|
T Consensus        19 ~~S~~PatC--P~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATC--PICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE---TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCC--CcchhhccchhhHHHHHHHHhcccC
Confidence            566789999  9999999999999999986656554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2893|consensus

Probab=94.84  E-value=0.0062  Score=42.33  Aligned_cols=47  Identities=26%  Similarity=0.495  Sum_probs=36.1

Q ss_pred             CCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        47 ~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ...+|| |  ..|++.|.....|..|++    -+.|+|-.|-|.+-+...|..|
T Consensus         7 k~~kpw-c--wycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    7 KVDKPW-C--WYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ccCCce-e--eecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            345677 5  689999999999999987    4679999998765555555444

>PRK04860 hypothetical protein; Provisional

Probab=94.84  E-value=0.017  Score=37.94  Aligned_cols=33  Identities=9%  Similarity=0.102  Sum_probs=28.1

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      -+|.|. |+.   ....+.+|.++|+|+++|.|..+.
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~  150 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCG  150 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCC
Confidence            369998 987   677889999999999999997654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.43  E-value=0.026  Score=24.85  Aligned_cols=22  Identities=36%  Similarity=0.774  Sum_probs=19.9

Q ss_pred             eeCCCCCCCccccCchHHHHHHHH
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQE   75 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~   75 (127)
                      |.|  ..|+..|.....+..|++.
T Consensus         1 ~~C--~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYC--DICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHTT
T ss_pred             CCC--CCCCCCcCCHHHHHHHHCc
Confidence            679  9999999999999999874

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.04  E-value=0.012  Score=43.23  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=55.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHH--HcCCC--CceecC--CCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQ--ECGQL--PRFHCS--LCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~--~h~~~--~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .++.|  ..|...|.....+..|.+  .|+++  +++.|.  .|++.|.+...+..|..+|.+..+..+...
T Consensus       288 ~~~~~--~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (467)
T COG5048         288 LPIKS--KQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLL  357 (467)
T ss_pred             cCCCC--ccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccc
Confidence            36778  999999999999999999  89999  999999  799999999999999999998887765433

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.00  E-value=0.06  Score=24.03  Aligned_cols=19  Identities=37%  Similarity=0.641  Sum_probs=10.4

Q ss_pred             ecCCCCccCCChHHHHHHHH
Q psy3946          83 HCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        83 ~C~~C~k~f~~~~~l~~H~~  102 (127)
                      .|..||+.| ..+.|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455666666 4445555554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.97  E-value=0.016  Score=26.23  Aligned_cols=21  Identities=38%  Similarity=0.654  Sum_probs=14.0

Q ss_pred             eecCCCCccCCChHHHHHHHH
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      |-|..|++.|.....+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            556777777777777666654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1146|consensus

Probab=92.79  E-value=0.094  Score=44.45  Aligned_cols=74  Identities=18%  Similarity=0.300  Sum_probs=56.4

Q ss_pred             hhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHH-c------------------------CCCCce
Q psy3946          28 FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQE-C------------------------GQLPRF   82 (127)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~-h------------------------~~~~~~   82 (127)
                      ++..+.....+..++...+.--+.+.|  +.|+-.|.....|..|++. |                        .+.++|
T Consensus       442 ~e~~~~s~r~~~~~t~~L~S~~kt~~c--pkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~  519 (1406)
T KOG1146|consen  442 AEPLLESKRSLEGQTVVLHSFFKTLKC--PKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPY  519 (1406)
T ss_pred             hhhhhhhhcccccceeeeecccccccC--CccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcc
Confidence            444444444555555455666688999  9999999999999999986 1                        123678


Q ss_pred             ecCCCCccCCChHHHHHHHHh
Q psy3946          83 HCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        83 ~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      .|..|...+.....|.+|+..
T Consensus       520 ~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  520 PCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cceeeeeeeecchHHHHHHHH
Confidence            999999999999999999874

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.62  E-value=0.19  Score=23.80  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=15.9

Q ss_pred             ceecCCCCccCCChHHHHHHHH
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      +|.|..|+..|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4677778777777777777765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=91.26  E-value=0.47  Score=25.15  Aligned_cols=49  Identities=14%  Similarity=0.197  Sum_probs=34.5

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCC-cceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDT-GVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      +.+.-|.+ ......|..|....|..+ +.+.|  ++|...+.  ..|..|+..+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~C--PiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVC--PICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccC--CCchhhhh--hHHHHHHHHh
Confidence            34455666 344567888987778764 57899  99998655  3788888743

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=87.50  E-value=0.56  Score=22.27  Aligned_cols=24  Identities=25%  Similarity=0.891  Sum_probs=17.7

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCc
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPY   89 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k   89 (127)
                      |.|  ..||..+.-..            .++.|+.|+.
T Consensus         2 ~~C--~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVC--PVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EEC--CCCCCEECCCc------------CCCcCcCCCC
Confidence            788  89987655332            6789999975

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=86.17  E-value=0.71  Score=32.53  Aligned_cols=46  Identities=26%  Similarity=0.567  Sum_probs=33.3

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHH
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      |.|  ..||...... .+..|+....+ ..|.|..|++.|-. ..+..|..
T Consensus         4 FtC--nvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTC--NVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eeh--hhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            678  8888776655 46668876666 56888889988866 56666654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.12  E-value=0.42  Score=25.65  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=12.2

Q ss_pred             CCceecCCCCccCCChHHHHHHHHh
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      +.-++|+-|+..|.....+.+|...
T Consensus        15 E~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          15 EEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             ceeeeCCchhHHHHHhHHHHHHhhH
Confidence            3344555555555555555555443

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=82.99  E-value=0.41  Score=34.92  Aligned_cols=47  Identities=17%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             cchhhHhHhhHHHHHhHHhhcCC------------------CcceeCCCCCCCccccCchHHHHHHH
Q psy3946          26 LDFEKEERMNDVYNRNMKKNFND------------------TGVFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~h~~------------------~~p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      ..|++..+.+.-|+.|+...|..                  .+||.|  ..|+|.+....-|+.|+.
T Consensus       355 ~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrC--evC~KRYKNlNGLKYHr~  419 (423)
T COG5189         355 EGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRC--EVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceec--cccchhhccCccceeccc
Confidence            44888888888888887665511                  379999  999999999888888764

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.47  E-value=0.62  Score=29.67  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=14.0

Q ss_pred             eecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      ..|..||+.|...   ++|++.|+|.-|
T Consensus        73 i~clecGk~~k~L---krHL~~~~gltp   97 (132)
T PF05443_consen   73 IICLECGKKFKTL---KRHLRTHHGLTP   97 (132)
T ss_dssp             EE-TBT--EESBH---HHHHHHTT-S-H
T ss_pred             eEEccCCcccchH---HHHHHHccCCCH
Confidence            5677788776543   788888877654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.27  E-value=0.44  Score=32.80  Aligned_cols=41  Identities=17%  Similarity=0.463  Sum_probs=28.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHH---cC-------CCCc-----eecCCCCccCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQE---CG-------QLPR-----FHCSLCPYKSK   92 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~---h~-------~~~~-----~~C~~C~k~f~   92 (127)
                      +...|  +.|++.|..........+.   .+       +..|     +.|+.||.++.
T Consensus         4 k~~~C--PvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~   59 (214)
T PF09986_consen    4 KKITC--PVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAF   59 (214)
T ss_pred             CceEC--CCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccc
Confidence            56789  9999999988766655442   11       1222     47999998765

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=81.48  E-value=1.6  Score=25.40  Aligned_cols=24  Identities=33%  Similarity=0.859  Sum_probs=21.2

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      .+.|  ..|++.|.....|..|++.+
T Consensus        50 ~~~C--~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRC--PYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEB--SSSS-EESSHHHHHHHHHHT
T ss_pred             CCCC--CccCCCCcCHHHHHHHHcCc
Confidence            6999  99999999999999999854

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=80.49  E-value=1.5  Score=26.95  Aligned_cols=31  Identities=16%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCCh
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRR   94 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~   94 (127)
                      ...|  +.||+.|.-.           +..|..|+.||..|.-.
T Consensus         9 KR~C--p~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTC--PSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccC--CCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            4579  9999988743           35788999999887655

The function of members of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 52  FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
           + CPV +C+R +SR   L+RH R   GQ P F C +C     R D L +H++
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 70

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 52  FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
           ++CP   C++ +S    L RH +   G         C +  K   L   H+   H
Sbjct: 32  YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 52  FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
           ++C    C+  ++R   L+RH R+  G  P F C +C     R D L  HMK
Sbjct: 46  YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 52  FQCPVPNCNRVYSRRRSLSRHR----QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
            QC +  C     ++ SL+ H+    +    L  F C  C  + ++ D + +H    H
Sbjct: 8   LQCEI--CGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.79
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.74
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.71
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.69
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.69
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.69
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.68
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.68
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.67
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.66
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.66
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.65
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.65
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.64
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.63
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.62
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.61
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.61
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.61
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.59
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.58
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.57
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.56
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.56
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.56
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.55
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.55
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.54
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.54
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.54
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.53
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.53
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.52
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.52
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.5
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.5
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.49
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.48
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.47
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.47
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.47
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.46
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.43
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.43
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.43
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.42
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.41
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.39
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.37
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.35
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.34
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.34
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.34
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.33
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.31
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.29
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.29
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.28
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.27
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.27
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.25
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.25
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.24
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.19
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.18
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.18
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.17
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.17
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.17
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.16
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.14
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.1
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.09
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.06
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.03
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.02
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.01
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.0
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.0
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.99
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.99
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.98
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.97
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.97
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.96
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.95
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.95
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.92
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.9
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.88
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.87
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.85
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.83
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.83
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.81
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.79
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.77
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.76
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.7
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.7
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.67
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.66
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.66
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.65
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.64
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.63
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.62
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.61
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.61
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.61
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.6
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.6
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.6
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.6
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.58
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.56
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.55
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.55
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.53
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.52
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.52
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.52
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.5
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.47
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.43
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.41
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.41
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.4
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.76
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.4
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.39
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.36
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.33
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.31
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.27
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.25
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.21
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.2
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.17
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.46
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.16
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.15
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.15
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.13
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.11
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.08
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.07
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.06
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.04
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.98
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.2
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.16
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.91
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.88
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.85
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.84
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.92
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.68
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.81
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.99
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.79
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.17
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.09
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	92.67
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.79
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.25
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	81.22

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.79  E-value=7.7e-20  Score=100.66  Aligned_cols=59  Identities=22%  Similarity=0.371  Sum_probs=56.5

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      .|+||.|  ..|++.|.....|..|+++|++++||.|..|++.|.+.+.|..|+++|+|++
T Consensus         1 SEKpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEEC--TTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccC--CCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4799999  9999999999999999999999999999999999999999999999999986

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.77  E-value=2.6e-19  Score=113.28  Aligned_cols=89  Identities=13%  Similarity=0.243  Sum_probs=82.8

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ..+.+..|.+.|.....|.+|++. |++++||.|  ..|++.|.....|..|+++|++++||.|..|++.|.+...|..|
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H   97 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFNI-HSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH   97 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHHH-HHCCSCEEC--SSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHHH-cCCCCCeeC--CccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHH
Confidence            446788899999999999999976 999999999  99999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCc
Q psy3946         101 MKHGHKLEHITE  112 (127)
Q Consensus       101 ~~~h~g~k~~~c  112 (127)
                      +++|++++|+.+
T Consensus        98 ~~~hh~~~p~~~  109 (133)
T 2lt7_A           98 IKSVHSQDPSGD  109 (133)
T ss_dssp             HHHHTCCCTTSS
T ss_pred             hHHhcCCCCCCC
Confidence            999999877544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=2.4e-18  Score=104.08  Aligned_cols=90  Identities=14%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      ...+.+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHH-HCCSCCCBC--SSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH-cCCCCCcCC--CCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            4457788899999999999999876 999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCc
Q psy3946         100 HMKHGHKLEHITE  112 (127)
Q Consensus       100 H~~~h~g~k~~~c  112 (127)
                      |+++|+++++|..
T Consensus        92 H~~~H~~~~~~~~  104 (106)
T 2ee8_A           92 HKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHTTSCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            9999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=9.7e-18  Score=99.62  Aligned_cols=90  Identities=18%  Similarity=0.314  Sum_probs=83.7

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      +....+..|.+.|.....|..|++. |.++++|.|  ..|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGG-CCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHh-cCCCCCEeC--CCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            4557888999999999999999976 999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCc
Q psy3946         100 HMKHGHKLEHITE  112 (127)
Q Consensus       100 H~~~h~g~k~~~c  112 (127)
                      |+++|+++++..+
T Consensus        83 H~~~h~~~~~p~~   95 (96)
T 2dmd_A           83 HLRSHTGDSGPSS   95 (96)
T ss_dssp             HHTTCCSCCCCCC
T ss_pred             HHHHhcCCCCCCC
Confidence            9999999987643

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.6e-17  Score=95.16  Aligned_cols=65  Identities=18%  Similarity=0.373  Sum_probs=62.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      +.++++|.|  ..|++.|.....|..|+++|++.++|.|..|++.|.....|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEEC--CCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            677899999  99999999999999999999999999999999999999999999999999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=4.7e-17  Score=92.53  Aligned_cols=64  Identities=16%  Similarity=0.363  Sum_probs=61.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      .+.++++|.|  ..|++.|.....|..|+++|++.++|.|..|++.|.....|..|+++|++++||
T Consensus        11 ~~~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCC--TTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeEC--CCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3788999999  999999999999999999999999999999999999999999999999999986

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=1.8e-17  Score=97.27  Aligned_cols=85  Identities=22%  Similarity=0.353  Sum_probs=76.2

Q ss_pred             ccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          22 VLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        22 ~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      ...+.  .|...|.....|.+|++. |.++++|.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHH-HHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHH-hCCCCCccC--CCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            34454  689999999999999876 999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCC
Q psy3946         100 HMKHGHKLEH  109 (127)
Q Consensus       100 H~~~h~g~k~  109 (127)
                      |+++|+|++.
T Consensus        81 H~~~H~~~k~   90 (90)
T 1a1h_A           81 HTKIHLRQKD   90 (90)
T ss_dssp             HHGGGGC---
T ss_pred             HHHHhcccCC
Confidence            9999999863

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=95.11  Aligned_cols=84  Identities=19%  Similarity=0.375  Sum_probs=76.1

Q ss_pred             ccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          22 VLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        22 ~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      ...+.  .|.+.|.....|..|++. |.++++|.|++..|++.|.....|..|++.|+++++|.|..|++.|.....|..
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   93 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL   93 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHH-HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHH
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHH-hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHH
Confidence            35555  499999999999999976 999999999444799999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q psy3946         100 HMKHGHK  106 (127)
Q Consensus       100 H~~~h~g  106 (127)
                      |+++|++
T Consensus        94 H~~~H~~  100 (100)
T 2ebt_A           94 HMKRHQN  100 (100)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9999975

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=106.73  Aligned_cols=89  Identities=12%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcc--------eeCCCCCCCccccCchHHHHHHHHcCCCCceecCC--CCccCC
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGV--------FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSK   92 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p--------~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~   92 (127)
                      ..+..|.+.|.....|.+|++..|.+..+        |.|  ..|++.|.....|..|++.|.+.++|.|..  |++.|.
T Consensus        26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~  103 (155)
T 2rpc_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFA  103 (155)
T ss_dssp             SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTC--TTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEES
T ss_pred             cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCC--CCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccC
Confidence            34455555555555555555443444333        455  555555555555555555555555555554  555555


Q ss_pred             ChHHHHHHHHhcCCCCCCCch
Q psy3946          93 RRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        93 ~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ....|..|+++|+++++|.|.
T Consensus       104 ~~~~L~~H~~~h~~~~~~~C~  124 (155)
T 2rpc_A          104 RSENLKIHKRTHTGEKPFKCE  124 (155)
T ss_dssp             CHHHHHHHHTTTCSSCSBCCS
T ss_pred             CHHHHHHHHHhhCCCCCccCC
Confidence            555555555555555555554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.69  E-value=4.3e-18  Score=107.66  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             HHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          42 MKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        42 ~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      +...|.|+++|.|  ..|++.|.....|..|+++|+++++|.|..|++.|.+...|..|+++|+|++||.|....
T Consensus        13 ~~~~h~Gek~y~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~   85 (133)
T 2lt7_A           13 YELIVDGRVYYIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACG   85 (133)
T ss_dssp             EEEEETTEEEEEE--TTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSC
T ss_pred             ceeecCCCcCeEC--CCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCC
Confidence            3445899999999  999999999999999999999999999999999999999999999999999999997653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.68  E-value=2.7e-17  Score=101.06  Aligned_cols=91  Identities=22%  Similarity=0.370  Sum_probs=82.8

Q ss_pred             cccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHH
Q psy3946          21 EVLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLK   98 (127)
Q Consensus        21 ~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~   98 (127)
                      ....+.  +|.+.|.....|..|++. |.++++|.|++..|++.|.....|..|++.|.+.++|.|..|++.|.....|.
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   83 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK   83 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHH-HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHh-hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHH
Confidence            345665  499999999999999876 99999999922289999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCc
Q psy3946          99 SHMKHGHKLEHITE  112 (127)
Q Consensus        99 ~H~~~h~g~k~~~c  112 (127)
                      .|+++|+++++|.|
T Consensus        84 ~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           84 THTRTHTGEKPFSC   97 (119)
T ss_dssp             HHHHHHHTCCCEEC
T ss_pred             HHHHHhcCCCCeeC
Confidence            99999999999999

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=6.7e-17  Score=99.88  Aligned_cols=93  Identities=20%  Similarity=0.304  Sum_probs=84.3

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHH---cCCCCceecCCCCccCCChHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQE---CGQLPRFHCSLCPYKSKRRDL   96 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~---h~~~~~~~C~~C~k~f~~~~~   96 (127)
                      ...+.+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+..   +.+.++|.|..|++.|.....
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHHHHH-HSSCCSCBC--TTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCcCCCHHHHHHHHHh-CCCCCCeEC--CCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHH
Confidence            3457788899999999999999876 999999999  9999999999999999985   578899999999999999999


Q ss_pred             HHHHHHhcCCCCCCCchhh
Q psy3946          97 LKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        97 l~~H~~~h~g~k~~~c~~~  115 (127)
                      |..|+++|++++||.|...
T Consensus        82 l~~H~~~h~~~~~~~C~~C  100 (124)
T 2dlq_A           82 LRLHMVSHTGEMPYKCSSC  100 (124)
T ss_dssp             HHHHHHHHSSSCSEECSSS
T ss_pred             HHHHHHHcCCCCCccCCCc
Confidence            9999999999999998654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.67  E-value=6.1e-17  Score=93.31  Aligned_cols=80  Identities=13%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             cccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHh
Q psy3946          24 SVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      .+..|.+.|.....|..|++. |.++++|.|  ..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLI-HSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHH-HHTCCCEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             cCCCCcccccCchhHHHHHHH-cCCCCCeeC--CcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            456688888889999999976 999999999  99999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy3946         104 GHK  106 (127)
Q Consensus       104 h~g  106 (127)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            976

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.5e-16  Score=89.53  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=62.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHIT  111 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~  111 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++.++|.|..|++.|.....|..|+++|++++|..
T Consensus         3 s~~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            3788999999  9999999999999999999999999999999999999999999999999999864

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4.7e-17  Score=97.56  Aligned_cols=75  Identities=20%  Similarity=0.370  Sum_probs=67.1

Q ss_pred             HHhHHhhcCCCcceeCCCCCCCcccc-CchHHHHHHHHcCC-CCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          39 NRNMKKNFNDTGVFQCPVPNCNRVYS-RRRSLSRHRQECGQ-LPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        39 ~~~~~~~h~~~~p~~C~~~~C~~~f~-~~~~l~~h~~~h~~-~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      .+|++. |.++++|.|  ..|++.|. ....|..|+++|.+ +++|.|..|++.|.+...|..|+++|++++|.......
T Consensus        13 ~~h~~~-h~~~~~~~C--~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~~~~   89 (98)
T 2gqj_A           13 EQWQRA-IHERGEAVC--PTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASE   89 (98)
T ss_dssp             SHHHHT-TTTTSCCCC--TTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCCCCC
T ss_pred             HHHHHH-hccCCCcCC--CCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCCCCc
Confidence            345544 999999999  99999999 99999999999998 89999999999999999999999999999997654443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.66  E-value=4.7e-17  Score=107.79  Aligned_cols=91  Identities=14%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             cccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHH
Q psy3946          22 VLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~  101 (127)
                      .+.+..|.+.|.....|..|+.. |.++++|.|  ..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+
T Consensus        77 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           77 PYKCPECGKSFSQRANLRAHQRT-HTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ  153 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHTCCCEEC--TTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             CccCcccCCccCCHHHHHHHHHh-cCCCCCCcC--CCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHH
Confidence            35566677777777778877765 777778888  888888888888888888887888888888888888888888888


Q ss_pred             HhcCCCCCCCchhh
Q psy3946         102 KHGHKLEHITEDQI  115 (127)
Q Consensus       102 ~~h~g~k~~~c~~~  115 (127)
                      ++|+++++|.|...
T Consensus       154 ~~H~~~~~~~C~~C  167 (190)
T 2i13_A          154 RTHTGEKPYKCPEC  167 (190)
T ss_dssp             HHHHCCCCEECTTT
T ss_pred             HhcCCCCCeECCCC
Confidence            88888888877643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=9.8e-17  Score=97.07  Aligned_cols=69  Identities=20%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHH-Hc---CCCCceecCCCCccCCChHHHHHH-HHhcCCCCCCCchhhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-EC---GQLPRFHCSLCPYKSKRRDLLKSH-MKHGHKLEHITEDQII  116 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h---~~~~~~~C~~C~k~f~~~~~l~~H-~~~h~g~k~~~c~~~~  116 (127)
                      .+|++||.|  ..|++.|.....|..|++ .|   ++++||.|..|++.|.....|..| +++|+|++||.|....
T Consensus        13 ~~gekpy~C--~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEEC--SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCCcCcCC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            578999999  999999999999999997 59   668999999999999999999999 8999999999998643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.7e-16  Score=96.15  Aligned_cols=90  Identities=11%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      +....+..|.+.|.....|..|++. |  .++|.|  ..|++.|.....|..|+. |+++++|.|..|++.|.+...|..
T Consensus        14 ~~~~~C~~C~~~f~~~~~l~~H~~~-H--~~~~~C--~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           14 KEVYQCRLCNAKLSSLLEQGSHERL-C--RNAAVC--PYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHH-H--HHSBCC--TTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH-C--CCCccC--CCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHH
Confidence            4557788899999999999999876 6  478999  999999999999999996 999999999999999999999999


Q ss_pred             HHH-hcCCCCCCCchhh
Q psy3946         100 HMK-HGHKLEHITEDQI  115 (127)
Q Consensus       100 H~~-~h~g~k~~~c~~~  115 (127)
                      |++ .|.++++|.+...
T Consensus        88 H~~~~H~~~~~~~~~~p  104 (107)
T 1wjp_A           88 HQVEVHNQNNMAPTSGP  104 (107)
T ss_dssp             HHHHTSCCCCCCCCCCS
T ss_pred             HHHHHcCCCCCCCCCCC
Confidence            997 9999999987643

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.3e-16  Score=94.38  Aligned_cols=73  Identities=22%  Similarity=0.421  Sum_probs=63.1

Q ss_pred             hHHHHHhHHhhcCCCcceeCCCCCCCccc-cCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH-HHhcCCCCCCC
Q psy3946          35 NDVYNRNMKKNFNDTGVFQCPVPNCNRVY-SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH-MKHGHKLEHIT  111 (127)
Q Consensus        35 ~~~~~~~~~~~h~~~~p~~C~~~~C~~~f-~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H-~~~h~g~k~~~  111 (127)
                      ...+..+... +.++++|.|  ..|++.| .....|..|+++| ++++|.|..|++.|.....|..| +++|+++..+.
T Consensus        19 ~~~~~~~~~~-~~~~~~~~C--~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           19 GSLEEQWYLE-IVDKGSVSC--PTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP   93 (96)
T ss_dssp             TCHHHHHHHH-HHHTSCEEC--TTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCS
T ss_pred             chHHHHHHHH-hcCCCCcCC--CCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCC
Confidence            4445555544 778899999  9999999 9999999999999 99999999999999999999999 88888755444

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.64  E-value=3e-16  Score=97.13  Aligned_cols=88  Identities=16%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             ccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC--CCccCCChHHH
Q psy3946          22 VLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRDLL   97 (127)
Q Consensus        22 ~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l   97 (127)
                      .+.+.  .|.+.|.....|..|+.. | +.++|.|  ..|++.|.....|..|++.|.+.++|.|..  |++.|.....|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~-h-~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHT-H-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGG-G-SCCCEEC--TTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHH-c-CCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            45555  688888888889999865 7 7888999  999999999999999999999999999975  99999999999


Q ss_pred             HHHHHhcCCCCCCCch
Q psy3946          98 KSHMKHGHKLEHITED  113 (127)
Q Consensus        98 ~~H~~~h~g~k~~~c~  113 (127)
                      ..|+++|+++++|.|.
T Consensus        81 ~~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVCP   96 (124)
T ss_dssp             HHHHHHHHCCCCCCCC
T ss_pred             HHHHHHhCCCCceECC
Confidence            9999999999999884

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=7.2e-16  Score=91.24  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC--CceecCCCCccCCChHHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL--PRFHCSLCPYKSKRRDLL   97 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~--~~~~C~~C~k~f~~~~~l   97 (127)
                      +..+.+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|++.|.+.  ++|.|..|++.|.....|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLS-HSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHH-SCSSCSEEC--SSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHh-cCCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHH
Confidence            3457788899999999999999876 999999999  99999999999999999999987  899999999999999999


Q ss_pred             HHHHH-hcCCC
Q psy3946          98 KSHMK-HGHKL  107 (127)
Q Consensus        98 ~~H~~-~h~g~  107 (127)
                      ..|++ .|.++
T Consensus        82 ~~H~~~~H~~~   92 (95)
T 2yt9_A           82 NGHIKQVHSGP   92 (95)
T ss_dssp             HHHHHHTSCCC
T ss_pred             HHHHHHhcCCC
Confidence            99986 67664

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.63  E-value=1.7e-16  Score=105.10  Aligned_cols=92  Identities=14%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ....+..|.+.|.....|.+|+.. |.++++|.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|
T Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H  124 (190)
T 2i13_A           48 KPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH  124 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH-HHCCCCEEC--TTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCccCCCcCchhCCHHHHHHHHHh-cCCCCCccC--cccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHH
Confidence            345566677777777777777755 777777777  77777777777777777777777777777777777777777777


Q ss_pred             HHhcCCCCCCCchhh
Q psy3946         101 MKHGHKLEHITEDQI  115 (127)
Q Consensus       101 ~~~h~g~k~~~c~~~  115 (127)
                      +++|+++++|.|...
T Consensus       125 ~~~h~~~~~~~C~~C  139 (190)
T 2i13_A          125 QRTHTGEKPYKCPEC  139 (190)
T ss_dssp             HHHHHCCCCEECTTT
T ss_pred             HHHhCCCCCeECCCC
Confidence            777777777777543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4.1e-16  Score=90.63  Aligned_cols=75  Identities=15%  Similarity=0.370  Sum_probs=67.0

Q ss_pred             HHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC----CceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          38 YNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL----PRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        38 ~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~----~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +.+|++. |+++++|.|  ..|++.|.....|..|++.|...    ++|.|..|++.|.....|..|+++|++++++.|.
T Consensus         3 ~~~H~~~-H~~~k~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~   79 (86)
T 1x6h_A            3 SGSSGRT-HTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGE   79 (86)
T ss_dssp             TTCCSTT-CCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCC
T ss_pred             cccccce-ecCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccC
Confidence            4556654 999999999  99999999999999999876654    7899999999999999999999999999999886


Q ss_pred             hh
Q psy3946         114 QI  115 (127)
Q Consensus       114 ~~  115 (127)
                      ..
T Consensus        80 ~~   81 (86)
T 1x6h_A           80 NS   81 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=8.7e-16  Score=88.02  Aligned_cols=70  Identities=23%  Similarity=0.432  Sum_probs=63.0

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCC--CCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSL--CPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .+++++|.|.+..|++.|.....|..|++ .|++.++|.|..  |++.|.....|..|+++|++++||.|...
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   74 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS   74 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSS
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCC
Confidence            46788999944459999999999999999 799999999998  99999999999999999999999999753

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=7.7e-16  Score=87.04  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=59.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|.++++|.|..|++.|.+...|..|+++|+++.+
T Consensus         8 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            8 IHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             TTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCccC--CCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            4899999999  99999999999999999999999999999999999999999999999987653

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.61  E-value=4.9e-16  Score=96.21  Aligned_cols=89  Identities=20%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC--CCCccCCChHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS--LCPYKSKRRDLLK   98 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~k~f~~~~~l~   98 (127)
                      ....+..|.+.|.....|..|+.. |.++++|.|++..|++.|.....|..|+++|.++++|.|.  .|++.|.+...|.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~  111 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK  111 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG-TSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTH
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH-cCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHH
Confidence            446778899999999999999876 9999999992224999999999999999999999999996  5999999999999


Q ss_pred             HHHHhcCCCCCC
Q psy3946          99 SHMKHGHKLEHI  110 (127)
Q Consensus        99 ~H~~~h~g~k~~  110 (127)
                      .|+++|++++++
T Consensus       112 ~H~~~H~~~k~~  123 (124)
T 1ubd_C          112 SHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHHcccccC
Confidence            999999999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1e-15  Score=93.01  Aligned_cols=83  Identities=16%  Similarity=0.343  Sum_probs=77.8

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKS   99 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~   99 (127)
                      +..+.+ .|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+++|.+.++|.|..|++.|.....|..
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMSM-HLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHH-HSCCCSEEC--TTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCEec-cCCCccCCHHHHHHHHHH-cCCCcCccC--CCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            455778 899999999999999976 999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q psy3946         100 HMKHGHK  106 (127)
Q Consensus       100 H~~~h~g  106 (127)
                      |+++|++
T Consensus        84 H~~~~~~   90 (110)
T 2csh_A           84 HVTSCTK   90 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHccc
Confidence            9999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.61  E-value=8.1e-16  Score=89.91  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             ccccc--hhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHH
Q psy3946          23 LSVLD--FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSH  100 (127)
Q Consensus        23 ~~~~~--~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H  100 (127)
                      ..+..  |.+.|.....|.+|++. |.++++|.|++..|++.|.....|..|++.|+++++|.|..|++.|.....|..|
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            6 HTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHTT-SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             eeCCCCCCCCcCCCHHHHHHHHHh-cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            34444  88899999999999876 9999999993336999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q psy3946         101 MKHGH  105 (127)
Q Consensus       101 ~~~h~  105 (127)
                      +++|.
T Consensus        85 ~~~H~   89 (89)
T 2wbs_A           85 MKRHF   89 (89)
T ss_dssp             GGGGC
T ss_pred             HHhhC
Confidence            99873

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=97.37  Aligned_cols=88  Identities=16%  Similarity=0.278  Sum_probs=82.7

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCC--CCccccCchHHHHHHHHcCCCCceecCC--CCccCCChHHHH
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPN--CNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRDLLK   98 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l~   98 (127)
                      ..+..|.+.|.....|..|++. |.++++|.|  ..  |++.|.....|..|+++|+++++|.|..  |++.|.+...|.
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~  139 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRV-HTGEKPFPC--PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRK  139 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHH-HHCCCSEEC--SCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHH
T ss_pred             cCCCCcccccCCHHHHHHHHHh-cCCCCcccC--CcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHH
Confidence            4677789999999999999976 999999999  77  9999999999999999999999999997  999999999999


Q ss_pred             HHHHhcCCCCCCCch
Q psy3946          99 SHMKHGHKLEHITED  113 (127)
Q Consensus        99 ~H~~~h~g~k~~~c~  113 (127)
                      .|+++|+|++||.|.
T Consensus       140 ~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          140 KHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HSSTTTTSCCCSCSC
T ss_pred             HHHHHhcCCCCCCCC
Confidence            999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.5e-15  Score=84.27  Aligned_cols=62  Identities=24%  Similarity=0.515  Sum_probs=57.4

Q ss_pred             hhcCCCcceeCCCCCCCccccCchHHHHHHHH-c-CCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          44 KNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQE-C-GQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        44 ~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~-h-~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .+|++++||.|  ..|++.|.....|..|++. | ++.++|.|..|++.|.+...|..|++++++.
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEETTEEEC--TTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCCcceEC--CCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            35899999999  9999999999999999997 7 6899999999999999999999999999873

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.4e-15  Score=86.02  Aligned_cols=69  Identities=26%  Similarity=0.515  Sum_probs=59.7

Q ss_pred             HHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          37 VYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        37 ~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      .+..+....+.++++|.|++..|++.|.....|..|+++|.+.++|.|..|++.|.....|..|+++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            345566666899999999333699999999999999999999999999999999999999999999874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.1e-15  Score=81.25  Aligned_cols=57  Identities=19%  Similarity=0.526  Sum_probs=51.0

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      |+++|.|  ..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+++|++
T Consensus         1 g~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSREC--SYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBC--TTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccC--CCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4689999  99999999999999999999999999999999999999999999999875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=4.2e-15  Score=87.05  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=56.4

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHH-hcCCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLE  108 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k  108 (127)
                      +.+.++|.|  ..|++.|.....|..|+++|++++||.|..|++.|.+...|..|++ .|.+|.
T Consensus        23 ~~~~~~h~C--~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLC--PVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEEC--TTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEEC--CCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            667889999  9999999999999999999999999999999999999999999975 677664

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.56  E-value=3.4e-15  Score=87.41  Aligned_cols=69  Identities=26%  Similarity=0.465  Sum_probs=61.7

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      |++||.|++..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+++++|.|....
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   69 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG   69 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            468999933379999999999999999999999999999999999999999999999999999997543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.56  E-value=6.9e-15  Score=79.19  Aligned_cols=56  Identities=21%  Similarity=0.517  Sum_probs=54.1

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ||.|  ..|++.|.....|..|+++|++.++|.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBC--TTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcC--CCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6899  9999999999999999999999999999999999999999999999999886

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=4.9e-15  Score=84.82  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=58.5

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCC---CCceecCCCCccCCChHHHHHHHH-hcCCCCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQ---LPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHIT  111 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~---~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k~~~  111 (127)
                      +|++++||.|  ..|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|++ .|.++++..
T Consensus         1 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEEC--SSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeEC--CCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            3889999999  9999999999999999999986   899999999999999999999995 566666654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.2e-15  Score=96.51  Aligned_cols=86  Identities=13%  Similarity=0.205  Sum_probs=69.0

Q ss_pred             hhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC--CCccCCChHHHHHHH-Hhc
Q psy3946          28 FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRDLLKSHM-KHG  104 (127)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l~~H~-~~h  104 (127)
                      |.+.|.....|.+|++. |.++++|.|++..|++.|.....|..|++.|.+.++|.|..  |++.|.+...|..|+ ++|
T Consensus        45 c~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H  123 (155)
T 2gli_A           45 ELRPFKAQYMLVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH  123 (155)
T ss_dssp             TTCCCSSHHHHHHHTHH-HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             hhhhhhhHHHHHHHHHh-cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            34777778888888766 88888888822248888888888888888888888888887  888888888888887 788


Q ss_pred             CCCCCCCchh
Q psy3946         105 HKLEHITEDQ  114 (127)
Q Consensus       105 ~g~k~~~c~~  114 (127)
                      .++++|.|..
T Consensus       124 ~~~~~~~C~~  133 (155)
T 2gli_A          124 SNEKPYVCKL  133 (155)
T ss_dssp             CSCCCEECCS
T ss_pred             CCCCCeeCCC
Confidence            8888888863

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=1.3e-14  Score=89.44  Aligned_cols=86  Identities=19%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             ccccccchhhHhHhhHHHHHhHHh--hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHH
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKK--NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLK   98 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~   98 (127)
                      ..+.+..|.+.|.....|.+|+..  .+.++++|.|  ..|++.|.....|..|++.|.++++|.|..|++.|.+...|.
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  111 (124)
T 2dlq_A           34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC--SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ  111 (124)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEEC--SSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHH
T ss_pred             CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHH
Confidence            446778899999999999999875  3678899999  999999999999999999999999999999999999999999


Q ss_pred             HHHHh-cCCCC
Q psy3946          99 SHMKH-GHKLE  108 (127)
Q Consensus        99 ~H~~~-h~g~k  108 (127)
                      .|++. |.++.
T Consensus       112 ~H~~~~H~~~~  122 (124)
T 2dlq_A          112 SHMIKLHSGPS  122 (124)
T ss_dssp             HHHHHTSSCSS
T ss_pred             HHHHHHCCCCC
Confidence            99985 65543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=5.1e-15  Score=84.62  Aligned_cols=67  Identities=16%  Similarity=0.419  Sum_probs=59.5

Q ss_pred             HHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCC-CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          39 NRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQL-PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        39 ~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~-~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      .+|++. |++++||.|  ..|++.|.....|..|++ .|.+. ++|.|..|++.|.....|..|++++++..
T Consensus         4 ~~H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            4 GSSGRT-HSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCC-CSCCCSEEC--TTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             Cccccc-cCCCCCeEC--CCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            355554 999999999  999999999999999997 78875 89999999999999999999999877544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.54  E-value=5.5e-15  Score=90.62  Aligned_cols=80  Identities=26%  Similarity=0.418  Sum_probs=74.1

Q ss_pred             ccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec--CCCCccCCChHHH
Q psy3946          22 VLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC--SLCPYKSKRRDLL   97 (127)
Q Consensus        22 ~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C--~~C~k~f~~~~~l   97 (127)
                      ...+.  .|.+.|.....|..|++. |.++++|.|  ..|++.|.....|..|+++|+++++|.|  ..|++.|.+...|
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L  112 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL  112 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH-HHCCCCEEC--TTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHH-cCCCCCccC--CccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHH
Confidence            35565  799999999999999876 999999999  9999999999999999999999999999  7899999999999


Q ss_pred             HHHHHhc
Q psy3946          98 KSHMKHG  104 (127)
Q Consensus        98 ~~H~~~h  104 (127)
                      ..|+++|
T Consensus       113 ~~H~~~H  119 (119)
T 2jp9_A          113 VRHHNMH  119 (119)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9999876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.54  E-value=1e-14  Score=96.48  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             cccc--cchhhHhHhhHHHHHhHHhhcCCCcceeCCCC--CCCccccCchHHHHHH-HHc-CCCCceec--CCCCccCCC
Q psy3946          22 VLSV--LDFEKEERMNDVYNRNMKKNFNDTGVFQCPVP--NCNRVYSRRRSLSRHR-QEC-GQLPRFHC--SLCPYKSKR   93 (127)
Q Consensus        22 ~~~~--~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~--~C~~~f~~~~~l~~h~-~~h-~~~~~~~C--~~C~k~f~~   93 (127)
                      ...+  ..|.+.|.....|.+|++. |.++++|.|  .  .|++.|.....|..|+ ..| .+.++|.|  ..|++.|..
T Consensus        42 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~  118 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTC--DSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK  118 (190)
T ss_dssp             SSCCSSTTCCCCCSSHHHHHHHHTT-TTTCCCEEC--CSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSS
T ss_pred             CccCCCCCCChhhCCHHHHHHHHHH-ccCCCceeC--CCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCC
Confidence            3455  5677888888888888755 888888888  6  7888888888888887 566 45677888  778888888


Q ss_pred             hHHHHHHHHhcCCCCCCCchh
Q psy3946          94 RDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        94 ~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      ...|..|+++|++++||.|..
T Consensus       119 ~~~L~~H~~~H~~~~~~~C~~  139 (190)
T 1tf6_A          119 HNQLKVHQFSHTQQLPYECPH  139 (190)
T ss_dssp             HHHHHHHHGGGSSSCSSBCCS
T ss_pred             HHHHHHHHHHhCCCCCccCCC
Confidence            888888888888888888853

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=2.1e-14  Score=84.86  Aligned_cols=69  Identities=16%  Similarity=0.357  Sum_probs=64.3

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCC--CCCCchhhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL--EHITEDQII  116 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~--k~~~c~~~~  116 (127)
                      .+++++|.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|++.|+++  ++|.|....
T Consensus         2 s~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A            2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             CCCCSCEEC--SSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCCCeEC--CCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            367899999  999999999999999999999999999999999999999999999999997  999997543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.1e-14  Score=86.16  Aligned_cols=69  Identities=17%  Similarity=0.403  Sum_probs=64.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      +.++++|.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+++++|.|....
T Consensus         3 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCCB--TTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSS
T ss_pred             CCCCcCeEC--CCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCC
Confidence            567899999  999999999999999999999999999999999999999999999999999999997543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.6e-14  Score=92.40  Aligned_cols=92  Identities=14%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             ccccchhhHhHhhHHHHHhHHh--hcCCCcceeCCCCCC---CccccCchHHHHHHHHcCCCCceecCC--CCccCCChH
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKK--NFNDTGVFQCPVPNC---NRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRD   95 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~~p~~C~~~~C---~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~   95 (127)
                      ..+..|.+.|.....|..|+..  .|.+.++|.|++..|   ++.|.....|..|++.|.+.++|.|..  |++.|....
T Consensus         4 ~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   83 (155)
T 2gli_A            4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE   83 (155)
T ss_dssp             CCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHH
T ss_pred             CCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHH
Confidence            4567799999999999999874  488899999833234   489999999999999999999999985  999999999


Q ss_pred             HHHHHHHhcCCCCCCCchh
Q psy3946          96 LLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        96 ~l~~H~~~h~g~k~~~c~~  114 (127)
                      .|..|+++|+++++|.|..
T Consensus        84 ~l~~H~~~h~~~~~~~C~~  102 (155)
T 2gli_A           84 NLKTHLRSHTGEKPYMCEH  102 (155)
T ss_dssp             HHHHHHHHTTTCCCEECCS
T ss_pred             HHHHHHHHcCCCCCeeCCC
Confidence            9999999999999999983

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.52  E-value=3.3e-14  Score=85.68  Aligned_cols=69  Identities=19%  Similarity=0.338  Sum_probs=64.5

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      ...+++|.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+++++|.|....
T Consensus        12 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   80 (106)
T 2ee8_A           12 SKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECG   80 (106)
T ss_dssp             CCCCCCCBC--SSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSC
T ss_pred             cCCCcCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcC
Confidence            456788999  999999999999999999999999999999999999999999999999999999997643

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=83.81  Aligned_cols=61  Identities=16%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHH-cCCCCc--------eecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQE-CGQLPR--------FHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~-h~~~~~--------~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      .+.|  ..|++.|.....|..|++. |++.++        |.|..|++.|.....|..|+++|++++||.|.
T Consensus        25 ~~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSC--CCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcc--cccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4678  8999999999999999997 999887        99999999999999999999999999999996

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.50  E-value=3.3e-14  Score=93.97  Aligned_cols=91  Identities=14%  Similarity=0.250  Sum_probs=79.5

Q ss_pred             cccccc--chhhHhHhhHHHHHhHHhhc-CCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC--CCccCCChH
Q psy3946          21 EVLSVL--DFEKEERMNDVYNRNMKKNF-NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRD   95 (127)
Q Consensus        21 ~~~~~~--~~~~~~~~~~~~~~~~~~~h-~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~   95 (127)
                      ..+.+.  .|.+.|.....|.+|+...| .+.++|.|++..|++.|.....|..|+++|+++++|.|..  |++.|.+..
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~  150 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPS  150 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHH
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHH
Confidence            345666  79999999999999996667 5788999966779999999999999999999999999988  999999999


Q ss_pred             HHHHHHHhcCCCCCCCchh
Q psy3946          96 LLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        96 ~l~~H~~~h~g~k~~~c~~  114 (127)
                      .|..|+++|+|   |.|..
T Consensus       151 ~L~~H~~~H~~---~~C~~  166 (190)
T 1tf6_A          151 RLKRHEKVHAG---YPCKK  166 (190)
T ss_dssp             HHHHHHTSSCS---CCCCS
T ss_pred             HHHHHHHHhCC---CcCCC
Confidence            99999999998   54443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.8e-14  Score=85.99  Aligned_cols=68  Identities=19%  Similarity=0.383  Sum_probs=64.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .|+++++|.|  . |++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+++++|.|...
T Consensus         4 ~h~~~k~~~C--~-C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            4 GSSGDKLYPC--Q-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCCEEC--T-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCCEec--c-CCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            4889999999  5 999999999999999999999999999999999999999999999999999999754

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=6.1e-14  Score=76.21  Aligned_cols=56  Identities=32%  Similarity=0.574  Sum_probs=52.3

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHH-HhcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM-KHGHKL  107 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~-~~h~g~  107 (127)
                      +||.|  ..|++.|.....|..|+++|++.++|.|..|++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcC--CCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            57999  999999999999999999999999999999999999999999997 577765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.47  E-value=8.7e-14  Score=86.69  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=61.1

Q ss_pred             hHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          35 NDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        35 ~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ...+..|+ . |++++||.|  ..|++.|.....|..|+++|  .+||.|..|++.|.+...|..|+++|+|+-
T Consensus        60 ~~~l~~h~-~-h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           60 SSYLYRLL-A-SKAISQFVC--PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHH-H-HHHHCSEEC--TTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHH-H-hCCCCCeEC--CCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            44555555 3 888999999  99999999999999999999  889999999999999999999999999863

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.47  E-value=3.6e-14  Score=81.48  Aligned_cols=64  Identities=17%  Similarity=0.293  Sum_probs=60.6

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      ||.|  ..|++.|.....|..|++.|.+.++|.|..|++.|.....|..|+++|+++++|.|....
T Consensus         1 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   64 (82)
T 2kmk_A            1 SFDC--KICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG   64 (82)
T ss_dssp             CEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTS
T ss_pred             CccC--CCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcc
Confidence            6899  999999999999999999999999999999999999999999999999999999997643

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=5.1e-14  Score=80.51  Aligned_cols=65  Identities=15%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             cchhhHhHhhHHHHHhHHhhcCCCcceeCCCCC--CCccccCchHHHHHHHHcCCCCceecCCCCccCC
Q psy3946          26 LDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPN--CNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSK   92 (127)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~   92 (127)
                      ..|.+.|.....|.+|++..|.++++|.|  ..  |++.|.....|..|+++|+++++|.|..|++.|.
T Consensus        13 ~~C~~~f~~~~~L~~H~~~~H~~~~~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSC--PEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             TTTCCEESSHHHHHHHHHHGGGSCCCEEC--SCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCcCccCCHHHHHHHHHHHhCCCCCeEC--CCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            35999999999999999856999999999  77  9999999999999999999999999999999884

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.46  E-value=6e-14  Score=80.99  Aligned_cols=74  Identities=19%  Similarity=0.423  Sum_probs=67.9

Q ss_pred             cchhhHhHhhHHHHHhHHhhcCCCcceeCCCCC--CCccccCchHHHHHHHHcCCCCceecCC---CCccCCChHHHHHH
Q psy3946          26 LDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPN--CNRVYSRRRSLSRHRQECGQLPRFHCSL---CPYKSKRRDLLKSH  100 (127)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~---C~k~f~~~~~l~~H  100 (127)
                      ..|.+.|.....|..|++. |.++++|.|  ..  |++.|.....|..|+++|++   |.|..   |++.|.....|..|
T Consensus         7 ~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H   80 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFS-HTQQLPYEC--PHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKH   80 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHH-HHTTCCEEC--CSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHH-hCCCCCeeC--CCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHH
Confidence            6688888889999999865 999999999  77  99999999999999999988   99999   99999999999999


Q ss_pred             HHhcC
Q psy3946         101 MKHGH  105 (127)
Q Consensus       101 ~~~h~  105 (127)
                      +++|+
T Consensus        81 ~~~hh   85 (85)
T 2j7j_A           81 VAECH   85 (85)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.2e-14  Score=86.98  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhh-cCCCccee-CCCCCCCccc--cCchHHHHHHHHcCCCCceecCCCCccCCChH
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKN-FNDTGVFQ-CPVPNCNRVY--SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRD   95 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~p~~-C~~~~C~~~f--~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~   95 (127)
                      +....+..|.+.|.....|..|++.. |.+.+++. |  ..|++.|  .....|..|+++|+++++|.|..|++.|....
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C--~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~   94 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETD--NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQ   94 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCC--CCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHH
T ss_pred             CCCEECCccCchhcCHHHHHHHHHHhCccccCCCccC--CCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHH
Confidence            45577888999999999999998641 55556554 9  9999998  88899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCC
Q psy3946          96 LLKSHMKHGHKLEHIT  111 (127)
Q Consensus        96 ~l~~H~~~h~g~k~~~  111 (127)
                      .|..|+++|+......
T Consensus        95 ~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           95 DLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             HHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHhCCcccCC
Confidence            9999999988766554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.43  E-value=3.5e-14  Score=83.04  Aligned_cols=54  Identities=33%  Similarity=0.520  Sum_probs=29.3

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +||.|  ..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+++|+
T Consensus         2 k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~   55 (88)
T 1llm_C            2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH   55 (88)
T ss_dssp             CCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCcC--CCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC
Confidence            44555  5555555555555555555555555555555555555555555555554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=6.9e-15  Score=89.98  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=67.1

Q ss_pred             HHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHH--cCCCCce-ecCCCCccC--CChHHHHHHHHhcCCCCCCC
Q psy3946          37 VYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQE--CGQLPRF-HCSLCPYKS--KRRDLLKSHMKHGHKLEHIT  111 (127)
Q Consensus        37 ~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~--h~~~~~~-~C~~C~k~f--~~~~~l~~H~~~h~g~k~~~  111 (127)
                      .|.+|++. |++++||.|  ..|++.|.....|..|+++  |.+.+++ .|..|++.|  .....|..|+++|++++||.
T Consensus         6 ~l~~H~~~-H~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            6 SGKLYGSI-FTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCC-CCCCCSEEB--SSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             hhhhheee-eCCCCCEEC--CccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            35566644 999999999  9999999999999999998  7777665 499999998  89999999999999999999


Q ss_pred             chhhh
Q psy3946         112 EDQII  116 (127)
Q Consensus       112 c~~~~  116 (127)
                      |....
T Consensus        83 C~~C~   87 (115)
T 2dmi_A           83 CMYCG   87 (115)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            97643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.3e-13  Score=83.34  Aligned_cols=67  Identities=19%  Similarity=0.350  Sum_probs=62.0

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      .|+++++|.|  ..|++.|.....|..|++.|  .++|.|..|++.|.....|..|+. |+++++|.|....
T Consensus        10 ~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~   76 (107)
T 1wjp_A           10 PVENKEVYQC--RLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECM   76 (107)
T ss_dssp             CCCCCCCCBC--TTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGT
T ss_pred             ccCCCcCeEC--CCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCcccc
Confidence            3889999999  99999999999999999998  479999999999999999999996 9999999997654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3.3e-13  Score=74.90  Aligned_cols=60  Identities=15%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC-CCCccCCChHHHHHHHHhcCCCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS-LCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~-~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      ..+.+||.|  ..|++.|. ...|..|+++ ++++||.|. .|++.|.....|..|+++|-...+
T Consensus         5 ~C~~~~~~C--~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPC--TYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEEC--SSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeec--cccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            467899999  99999999 9999999999 999999999 999999999999999999887765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.39  E-value=1e-12  Score=78.13  Aligned_cols=70  Identities=19%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             CCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC--CCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS--LCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        47 ~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      ...++|.|.+..|++.|.....|..|++.|.+.++|.|.  .|++.|.....|..|+++|+++++|.|....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            446789994345999999999999999999999999996  5999999999999999999999999997643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.37  E-value=5.2e-13  Score=77.74  Aligned_cols=67  Identities=21%  Similarity=0.430  Sum_probs=60.3

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC--CCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS--LCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      ..+|.|++..|++.|.....|..|++.|.+.++|.|.  .|++.|.....|..|+++|+++++|.|...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC   71 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCC
Confidence            4679993333999999999999999999999999997  599999999999999999999999999754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.35  E-value=3.5e-13  Score=73.77  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      ||.+..+..|.+.|.....|.+|++. |+|++||.|  ..|++.|.....|..|+++|+|++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~-Ht~ekp~~C--~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSC--PECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH-HHTCCCEEC--TTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHH-hCCCcCeEC--CCCCCCcCCHHHHHHHhCccCCCC
Confidence            46778899999999999999999976 999999999  999999999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.34  E-value=1.7e-14  Score=84.41  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=73.1

Q ss_pred             cccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHH
Q psy3946          22 VLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~  101 (127)
                      ...+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|++.|.+ .+|.|..|++.|.....|..|+
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C--~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHCCCCEEC--TTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCCCCCccC--CCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHH
Confidence            45677899999999999999876 999999999  9999999999999999998875 7899999999999999999999


Q ss_pred             HhcC
Q psy3946         102 KHGH  105 (127)
Q Consensus       102 ~~h~  105 (127)
                      +.++
T Consensus        79 ~~~h   82 (88)
T 1llm_C           79 ARLK   82 (88)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=73.14  Aligned_cols=57  Identities=23%  Similarity=0.440  Sum_probs=52.4

Q ss_pred             cCCCcceeCCCCC--CCccccCchHHHHHHHHcCCCCceecCC--CCccCCChHHHHHHHHhc
Q psy3946          46 FNDTGVFQCPVPN--CNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        46 h~~~~p~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h  104 (127)
                      ....++|.|  ..  |++.|.....|..|+++|+++++|.|..  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHIC--SHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEEC--SSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeC--CCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            566789999  66  9999999999999999999999999975  999999999999998875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.34  E-value=8e-13  Score=76.17  Aligned_cols=61  Identities=20%  Similarity=0.395  Sum_probs=55.6

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC--CCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL--CPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      ||.|+|..|++.|.....|..|+++|.++++|.|..  |++.|.....|..|+++|++   |.|..
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCC
Confidence            578877889999999999999999999999999988  99999999999999999998   55543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.33  E-value=4e-13  Score=71.70  Aligned_cols=52  Identities=12%  Similarity=0.162  Sum_probs=47.3

Q ss_pred             CccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCC
Q psy3946          60 NRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHIT  111 (127)
Q Consensus        60 ~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~  111 (127)
                      ++.|.....|..|+++|+++++|.|..|++.|.+.+.|..|+++|+|++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4567777888899999999999999999999999999999999999999873

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.9e-13  Score=67.12  Aligned_cols=42  Identities=12%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            345677888888888888888888888888888888888774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.6e-13  Score=68.15  Aligned_cols=43  Identities=9%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567888888888888888888888888888888888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.31  E-value=6.4e-13  Score=67.04  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=30.8

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            45677777777777777777777777777777777777763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=5.5e-13  Score=68.69  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=34.3

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            4566777888888888888888888888888888888888764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-15  Score=83.48  Aligned_cols=68  Identities=18%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             HHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          37 VYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        37 ~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      .|..|++. |.++++|.|  ..|++.|.....|..       .++|.|..|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~l~~H~~~-h~~~~~~~C--~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A            5 SSGKRQKI-HLGDRSQKC--SKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             SCCCCCCC-CCCCSEEEC--SSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             hHHHHHHH-hCCCCCeeC--CcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            34556654 999999999  999999999887765       789999999999999999999999999999999964

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.1e-13  Score=68.04  Aligned_cols=43  Identities=14%  Similarity=0.134  Sum_probs=32.9

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777778888888888888888888888888888887753

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.29  E-value=4.2e-12  Score=67.66  Aligned_cols=47  Identities=15%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCCCCccCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLCPYKSKR   93 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C~k~f~~   93 (127)
                      .|.+++||.|  ..|++.|.....|..|++ +|+++++|.|..|++.|.+
T Consensus         6 ~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeEC--CCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3788999999  999999999999999997 9999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=9.3e-13  Score=67.82  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=31.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=67.40  Aligned_cols=42  Identities=12%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            455677777777777887777777788887777777777775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.28  E-value=1e-12  Score=67.65  Aligned_cols=42  Identities=12%  Similarity=0.095  Sum_probs=31.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=66.56  Aligned_cols=42  Identities=10%  Similarity=0.114  Sum_probs=32.9

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            455677788888888888888888888888888888888773

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=67.55  Aligned_cols=43  Identities=12%  Similarity=0.120  Sum_probs=32.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4556777777888888888888888888888888888877753

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=67.40  Aligned_cols=43  Identities=9%  Similarity=0.136  Sum_probs=34.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4567788888888888888888888888888888888888863

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.5e-12  Score=66.99  Aligned_cols=42  Identities=17%  Similarity=0.106  Sum_probs=25.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555566666666666666666666666666666666554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=67.54  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=33.9

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4566777888888888888888888888888888888888753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1e-12  Score=67.59  Aligned_cols=43  Identities=9%  Similarity=0.083  Sum_probs=33.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556777888888888888888888888888888888887753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.4e-12  Score=67.09  Aligned_cols=42  Identities=12%  Similarity=0.111  Sum_probs=34.2

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556777888888888888888888888888888888888875

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=1.4e-12  Score=67.12  Aligned_cols=42  Identities=10%  Similarity=0.071  Sum_probs=24.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555556666666666666666666666666666666554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=67.33  Aligned_cols=43  Identities=9%  Similarity=0.040  Sum_probs=33.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4556777888888888888888888888888888888887753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=67.21  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=33.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456677788888888888888888888888888888888775

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=67.19  Aligned_cols=42  Identities=12%  Similarity=0.175  Sum_probs=24.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555555666666666666666666666666666665554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.1e-12  Score=66.78  Aligned_cols=42  Identities=10%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            556777888888888888888888888888888888888773

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=66.83  Aligned_cols=42  Identities=12%  Similarity=0.083  Sum_probs=25.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence            344556666666666666666666666666666666666654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.2e-12  Score=67.39  Aligned_cols=42  Identities=14%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            445566666666666666666666666666666666666664

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.2e-12  Score=66.67  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|++++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            455667777777777777777777777777777777777663

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=67.18  Aligned_cols=42  Identities=12%  Similarity=0.174  Sum_probs=30.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445666777777777777777777777777777777777764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=67.61  Aligned_cols=43  Identities=9%  Similarity=0.118  Sum_probs=33.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566777788888888888888888888888888888887753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.4e-12  Score=67.10  Aligned_cols=42  Identities=10%  Similarity=0.075  Sum_probs=34.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456777888888888888888888888888888888888875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=67.19  Aligned_cols=42  Identities=10%  Similarity=0.049  Sum_probs=33.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            455677788888888888888888888888888888888875

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=66.71  Aligned_cols=42  Identities=12%  Similarity=0.122  Sum_probs=32.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455677777888888888888888888888888888888775

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=66.93  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            556778888888888888888888888888888888888773

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.27  E-value=1.6e-12  Score=65.48  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            34567777788888888888888888888888888887766

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.3e-12  Score=67.17  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445677777777777777777777777777777777777775

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=66.98  Aligned_cols=42  Identities=10%  Similarity=0.055  Sum_probs=25.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence            344555666666666666666666666666666666666654

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=66.48  Aligned_cols=40  Identities=20%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         5 H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEEC--SSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             cCCCcCccC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444444555  4455555554445555444444444444443

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-12  Score=67.64  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=24.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344555556666666666666666666666666666666554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=66.62  Aligned_cols=42  Identities=12%  Similarity=0.019  Sum_probs=27.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666666666666666666666666666666666664

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=67.03  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=21.4

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eml_A            4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred             cCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.26  E-value=1.6e-12  Score=66.87  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ely_A            5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCC
T ss_pred             CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3444555555555555555555555555555555555543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=67.04  Aligned_cols=42  Identities=10%  Similarity=0.086  Sum_probs=32.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            455677777788888888888888888888888888887775

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=66.57  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=23.5

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoq_A            4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCC
T ss_pred             CCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=66.79  Aligned_cols=41  Identities=10%  Similarity=0.020  Sum_probs=21.5

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=67.25  Aligned_cols=42  Identities=10%  Similarity=0.082  Sum_probs=31.4

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|++.++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            455677777777777777777777777777777777777775

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=1.6e-12  Score=66.88  Aligned_cols=42  Identities=17%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555555666666666666666666666666666666554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=66.61  Aligned_cols=42  Identities=10%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555566666666666666666666666666666666554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=66.11  Aligned_cols=42  Identities=12%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            456788888888888888888888888888888888888763

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=66.85  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emy_A            5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCS
T ss_pred             CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCC
Confidence            344444555555555555555555555555555555544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=66.54  Aligned_cols=42  Identities=10%  Similarity=-0.009  Sum_probs=25.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344556666666666666666666666666666666666654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.4e-12  Score=67.13  Aligned_cols=42  Identities=10%  Similarity=0.081  Sum_probs=33.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455677788888888888888888888888888888888875

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-12  Score=66.24  Aligned_cols=41  Identities=12%  Similarity=0.208  Sum_probs=33.9

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            45677888888888888888888888888888888888876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.25  E-value=1.5e-12  Score=66.93  Aligned_cols=41  Identities=12%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.4e-13  Score=66.40  Aligned_cols=41  Identities=12%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            44567788888888888888888888888888888888876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=66.92  Aligned_cols=42  Identities=10%  Similarity=0.098  Sum_probs=31.3

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=66.58  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=26.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344566666666666666666666666666666666666664

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2e-12  Score=66.50  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=24.6

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS   44 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence            34555566666666666666666666666666666666554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.4e-12  Score=65.83  Aligned_cols=41  Identities=17%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      |+++|+++++|.|..|++.|.+.+.|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            44567788888888888888888888888888888888876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.6e-12  Score=66.93  Aligned_cols=43  Identities=9%  Similarity=0.128  Sum_probs=33.2

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3456777788888888888888888888888888888887753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-12  Score=66.01  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=33.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            456677888888888888888888888888888888888773

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-12  Score=66.63  Aligned_cols=42  Identities=10%  Similarity=0.038  Sum_probs=24.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence            344555555666666666666666666666666666666554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=66.89  Aligned_cols=43  Identities=12%  Similarity=0.106  Sum_probs=35.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|++.++|.|..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567788888888888888888888888888888888888854

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=66.65  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=22.8

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq0_A            4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS   44 (46)
T ss_dssp             CCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred             CcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.5e-12  Score=67.01  Aligned_cols=41  Identities=15%  Similarity=0.121  Sum_probs=23.4

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emh_A            4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred             CCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=66.66  Aligned_cols=40  Identities=10%  Similarity=0.125  Sum_probs=20.8

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytk_A            5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred             ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3444555555555555555555555555555555555543

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.9e-12  Score=66.61  Aligned_cols=41  Identities=10%  Similarity=0.122  Sum_probs=21.2

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.7e-12  Score=65.44  Aligned_cols=42  Identities=12%  Similarity=0.074  Sum_probs=34.0

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            445677888888888888888888888888888888888773

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=66.46  Aligned_cols=42  Identities=10%  Similarity=0.090  Sum_probs=25.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555666666666666666666666666666666666654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=66.67  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=24.2

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS   44 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            34555556666666666666666666666666666666554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=1.1e-11  Score=70.46  Aligned_cols=63  Identities=10%  Similarity=0.174  Sum_probs=57.9

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .+....+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+++|++++||.|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT-TCCSCSEEC--SSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHH-cCCCcCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34567888899999999999999976 999999999  9999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2e-12  Score=66.51  Aligned_cols=41  Identities=12%  Similarity=0.018  Sum_probs=23.1

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em7_A            4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred             CCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.7e-12  Score=65.94  Aligned_cols=41  Identities=17%  Similarity=0.170  Sum_probs=21.6

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS   44 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.3e-12  Score=66.23  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=19.2

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytd_A            5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP   43 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCS
T ss_pred             cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCC
Confidence            344444445555555555555555555555555555444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.8e-12  Score=66.68  Aligned_cols=39  Identities=10%  Similarity=0.063  Sum_probs=20.0

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emp_A            5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSC
T ss_pred             cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            344445555555555555555555555555555555544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.7e-12  Score=65.98  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=21.0

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            3445555555555555555555555555555555555543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.24  E-value=2.1e-12  Score=66.34  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=22.3

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2e-12  Score=66.43  Aligned_cols=41  Identities=10%  Similarity=0.011  Sum_probs=22.0

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en8_A            4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS   44 (46)
T ss_dssp             CCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred             cccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=66.24  Aligned_cols=40  Identities=13%  Similarity=0.161  Sum_probs=20.8

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         7 H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEEC--SSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCCCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455555555  5555555555555555555555555555443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.9e-12  Score=65.87  Aligned_cols=40  Identities=10%  Similarity=-0.017  Sum_probs=21.4

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455555555555555555555555555555555555553

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.6e-12  Score=66.91  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=21.2

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+.+.|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=66.36  Aligned_cols=42  Identities=14%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344555555666666666666666666666666666666554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3e-12  Score=65.74  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=21.2

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            33445555555555555555555555555555555555543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.6e-12  Score=66.92  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677788888888888888888888888888888888775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.6e-12  Score=66.15  Aligned_cols=41  Identities=7%  Similarity=0.023  Sum_probs=25.1

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS   44 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            34555666666666666666666666666666666666654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.22  E-value=3.5e-12  Score=65.59  Aligned_cols=40  Identities=13%  Similarity=0.170  Sum_probs=20.9

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2el6_A            5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS   44 (46)
T ss_dssp             CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3445555555555555555555555555555555555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-12  Score=66.10  Aligned_cols=41  Identities=10%  Similarity=0.092  Sum_probs=21.0

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|++.++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em5_A            4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred             cCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444555555555555555555555555555555555543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.4e-12  Score=66.42  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677777788888888887777888888788777777763

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-12  Score=67.21  Aligned_cols=42  Identities=12%  Similarity=0.158  Sum_probs=32.0

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677777778877888787777788887777777777775

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.9e-12  Score=65.88  Aligned_cols=41  Identities=10%  Similarity=0.186  Sum_probs=22.5

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence            33455555555555555555555555555555555555553

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.2e-12  Score=66.31  Aligned_cols=41  Identities=12%  Similarity=0.059  Sum_probs=22.5

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS   44 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34455555555555555555555555555555555555553

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-12  Score=66.76  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=20.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         7 H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEEC--SSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCCeEC--CcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455555555  5555555555555555555555555555443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2.7e-12  Score=66.04  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCC-CCCCCch
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHK-LEHITED  113 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g-~k~~~c~  113 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44566777777777777777777777777777777 7777764

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4.6e-12  Score=65.26  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=23.7

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHH-hcCCCCCCCch
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHITED  113 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k~~~c~  113 (127)
                      +++|+++++|.|..|++.|.+...|..|++ +|++++||.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~   45 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS   45 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCC
Confidence            344555555666666666666666666655 55566655554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=8.2e-12  Score=64.07  Aligned_cols=44  Identities=11%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSS-GTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSC-SSCCCSEEC--SSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCC-cCCCCCeeC--CCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4433 999999999  9999999999999999999999999999987

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=8.9e-12  Score=64.07  Aligned_cols=40  Identities=10%  Similarity=-0.031  Sum_probs=31.5

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            4567777888888888888888888888888888888775

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.6e-12  Score=65.57  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=19.9

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS   44 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            444455555555555555555555555555555555443

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.9e-12  Score=63.99  Aligned_cols=44  Identities=20%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGS-SGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEEC--SSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccC-CcCCCCCeeC--CCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            444 3999999999  9999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.19  E-value=8.4e-12  Score=64.12  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGS-SGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSSCSCBC--SSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCC-ccCCCCceEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 4999999999  9999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.3e-12  Score=63.91  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSS-GTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCT-TSSCCSEEC--SSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccC-CCCCcCeEC--CCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4444 999999999  9999999999999999999999999999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-12  Score=66.34  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         7 H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEC--TTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555  5555555555555555555555555555443

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.6e-12  Score=63.86  Aligned_cols=44  Identities=16%  Similarity=0.258  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGS-SGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCCSSCCEEC--SSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCC-CCCCCcCcCC--CCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            443 3999999999  9999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=9.2e-12  Score=63.87  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSS-GTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCC-SSCCCCCCB--TTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             Cccc-CCCCCCeEC--CCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            4433 999999999  9999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=62.72  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=39.7

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567899999999999999999999999999999999999964

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.1e-11  Score=63.57  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGS-SGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCC-CSCCCCSEEC--SSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             Ccc-ccCCCcCeEC--CCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            443 3899999999  9999999999999999999999999999987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-11  Score=62.27  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            466777777777777777777777777777777777774

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=63.46  Aligned_cols=44  Identities=11%  Similarity=0.178  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSS-GTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCC-CSSCCSCBC--SSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCC-CCCCCCccC--CccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4444 999999999  9999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=9.9e-12  Score=63.80  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=40.4

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGS-SGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSS-CSSCCCSEEC--SSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCC-CCCCCcCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            443 3999999999  9999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.18  E-value=1.6e-11  Score=63.01  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=39.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            6 SGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSBCC--SSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCccc--CccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4999999999  9999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.4e-11  Score=63.16  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSS-GSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCT-TCCCCSEEC--SSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCC-CCCCCCeEC--CCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4433 999999999  9999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.18  E-value=8.8e-12  Score=63.94  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSS-GTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCC-SCCCCSEEC--SSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccC-CCCCCceEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4433 999999999  9999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=9.2e-12  Score=63.97  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSS-GSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCC-CCCSCSEEC--SSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCC-CCCCCCeEC--CcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4443 999999999  9999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.5e-11  Score=63.07  Aligned_cols=43  Identities=12%  Similarity=0.065  Sum_probs=40.2

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999964

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.17  E-value=1e-11  Score=63.78  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGS-SGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCS-SCTTSCCEEC--SSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             Ccc-CCCCCcCcCC--CCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            444 3999999999  9999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.4e-12  Score=63.88  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBC--TTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCCCcCeEC--CCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            3999999999  9999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9e-12  Score=63.96  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=40.6

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGS-SGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCS-CSSCCCSEEC--SSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccc-ccCCCcCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 4999999999  9999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.2e-11  Score=63.54  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGS-SGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSSSSCSEEC--SSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             Ccc-cCCCCCCEeC--CcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            443 3899999999  9999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=63.38  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGS-SGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCC-CSSSSCSCCC--SSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCC-CCCCCCCcCC--CcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            443 4899999999  9999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=6.9e-12  Score=64.44  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGS-SGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCC-CCSCCCCEEC--SSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCC-CCCCCCCEEc--cccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            444 3999999999  9999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.6e-12  Score=63.81  Aligned_cols=44  Identities=14%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGS-SGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSS-CCCCCCSSEE--TTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCC-CCCCCCCeEC--CCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            443 3999999999  9999999999999999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.7e-11  Score=61.33  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=27.5

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      +|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            46667777777777777777777777777777777765

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=63.62  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGS-SGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCC-SCCCCCSCBC--TTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             Ccc-ccCCCCCeeC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            443 3999999999  9999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=63.60  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGS-SGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCSSEEC--TTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccc-cCCCCCCeEC--CCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            443 3999999999  9999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.17  E-value=9.5e-12  Score=63.88  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSS-GMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCC-SCCCCCCCC--SSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCc-cCCCcCeEC--CCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            4433 899999999  9999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=9.2e-12  Score=63.93  Aligned_cols=44  Identities=14%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSS-GTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCS-CSCCCSEEC--TTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCC-CCCCCCcCC--CCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4443 999999999  9999999999999999999999999999987

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=1.8e-11  Score=73.85  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhc---CCCcceeCCCCCCCccccCchHHHHH-HHHcCCCCceecCCCC
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNF---NDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCP   88 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~~p~~C~~~~C~~~f~~~~~l~~h-~~~h~~~~~~~C~~C~   88 (127)
                      +..+.+..|.+.|.....|.+|++..|   .+++||.|  ..|++.|.....|..| +++|++++||.|..+.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C--~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVC--VECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEE--TTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            456788999999999999999987558   66899999  9999999999999999 8999999999998754

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.6e-11  Score=63.04  Aligned_cols=41  Identities=20%  Similarity=0.273  Sum_probs=39.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEEC--SSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCCCeEC--CCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            3999999999  9999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.16  E-value=1.3e-11  Score=63.35  Aligned_cols=44  Identities=11%  Similarity=0.154  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSS-GTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCS-CCCCCSEEC--SSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCC-CCCCcCeEC--CccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4443 999999999  9999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=63.46  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEEC--TTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.16  E-value=1.7e-11  Score=62.96  Aligned_cols=41  Identities=15%  Similarity=0.217  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.16  E-value=3.7e-11  Score=67.73  Aligned_cols=63  Identities=11%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             CCccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCce
Q psy3946          17 GLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRF   82 (127)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~   82 (127)
                      ...+....+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHH-HCCCCSEEC--TTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHH-cCCCCCEEC--CCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3345567888999999999999999976 999999999  99999999999999999999999876

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=2.3e-11  Score=63.11  Aligned_cols=42  Identities=12%  Similarity=0.232  Sum_probs=35.4

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCc
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPY   89 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k   89 (127)
                      +.++++|.|  ..|++.|.....|..|+++|+++++|.|..|++
T Consensus         7 ~~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEE--TTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeC--CCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            677788888  888888888888888888888888888888875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.5e-11  Score=63.15  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=39.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEEC--SSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccCCCCCeEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3899999999  9999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.1e-11  Score=63.57  Aligned_cols=44  Identities=16%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGS-SGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSC-CCSSCCTTCC--TTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCc-CCCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            444 4999999999  9999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=2.7e-11  Score=61.90  Aligned_cols=41  Identities=15%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCP   88 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~   88 (127)
                      |++++||.|  ..|++.|.....|..|+++|+++++|.|+.||
T Consensus         5 h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEE--TTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcC--CCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            666667777  77777777777777777777777777776664

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=62.86  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCC--TTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeEC--CCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.5e-11  Score=62.22  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCC--CCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=1.9e-11  Score=62.74  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEEC--SSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccC--CCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=63.61  Aligned_cols=44  Identities=14%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGS-SGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STT-CCCCCCSEEE--TTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccc-CCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 4999999999  9999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=63.73  Aligned_cols=43  Identities=9%  Similarity=0.068  Sum_probs=40.1

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999963

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.5e-11  Score=62.28  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQC--RECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEEC--TTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccCCCCCEEc--cccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4999999999  9999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2e-11  Score=62.65  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBC--SSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCC--CccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=62.89  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBC--SSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeC--cccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=63.20  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEE--TTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ccCCCcCeEC--CCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            4999999999  9999999999999999999999999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=62.13  Aligned_cols=40  Identities=13%  Similarity=0.166  Sum_probs=30.7

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      ++|+++++|.|..|++.|.+...|..|+++|++++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            3567777788888888888888888888888888887774

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=62.71  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=40.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSS-GTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSS-SSCCCSEEC--SSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCC-CCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4443 999999999  9999999999999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.6e-12  Score=63.85  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      |+++|+++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5678999999999999999999999999999999999999964

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.9e-11  Score=62.70  Aligned_cols=41  Identities=15%  Similarity=0.202  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEE--TTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeEC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=63.14  Aligned_cols=39  Identities=10%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            344555555555555555555555555555555555553

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=62.67  Aligned_cols=41  Identities=12%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSB--TTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCCcCC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.2e-11  Score=60.77  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEEC--SSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCeEC--cccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4e-11  Score=61.63  Aligned_cols=41  Identities=17%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C   87 (127)
                      .|++++||.|  ..|++.|.....|..|++ +|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCC--SSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEEC--CccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3899999999  999999999999999999 9999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=62.87  Aligned_cols=39  Identities=13%  Similarity=0.093  Sum_probs=21.6

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      +|+++++|.|..|++.|.+...|..|+++|++++||.|.
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS   44 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            345555555555555555555555555555555555553

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=7.4e-11  Score=60.42  Aligned_cols=41  Identities=15%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         6 ~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEEC--SSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCeeC--cccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.5e-11  Score=60.69  Aligned_cols=41  Identities=15%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            6 SGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCEEC--CcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=1.4e-10  Score=64.71  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=35.7

Q ss_pred             cCCCCceecCC--CCccCCChHHHHHHH-HhcCCCCCCCchhhhh
Q psy3946          76 CGQLPRFHCSL--CPYKSKRRDLLKSHM-KHGHKLEHITEDQIIV  117 (127)
Q Consensus        76 h~~~~~~~C~~--C~k~f~~~~~l~~H~-~~h~g~k~~~c~~~~~  117 (127)
                      +++++||+|..  |+++|.+.+.|..|+ ++|+++||+.|.+...
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~~~   66 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEVEE   66 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccccc
Confidence            56889999975  999999999999997 6899999999877543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.08  E-value=1.1e-10  Score=57.68  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCc
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITE  112 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c  112 (127)
                      |+++++|.|..|++.|...+.|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567788888888888888888888888888888765

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.4e-11  Score=61.00  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=39.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus         6 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCC--SSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4899999999  9999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=2.8e-10  Score=65.54  Aligned_cols=70  Identities=19%  Similarity=0.419  Sum_probs=62.0

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCC---cceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccC
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDT---GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKS   91 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f   91 (127)
                      +..+.+..|.+.|.....|.+|+...|...   ++|.|  ..|++.|.....|..|++.|.+.+++.|..|+.++
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEEC--SSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceEC--CCCCChhCCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            456788889999999999999987744443   79999  99999999999999999999999999999998765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.06  E-value=1.3e-10  Score=59.23  Aligned_cols=40  Identities=15%  Similarity=0.315  Sum_probs=37.7

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      .|+++++|.|..|++.|.....|..|+++|+++++|.|..
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   43 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS   43 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence            5889999999999999999999999999999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.8e-10  Score=59.33  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             cCCCcceeCCCC--CCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          46 FNDTGVFQCPVP--NCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        46 h~~~~p~~C~~~--~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      |+++++|.|  .  .|++.|.....|..|+++|++++||.|..|
T Consensus         7 H~~~k~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFAC--TWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEEC--CSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeEC--CCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444455555  3  455555555555555555555455554443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.04  E-value=1e-10  Score=59.97  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGS-SGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCSEEC--SSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCC-CCCCCCCEEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            443 3999999999  999999999999999999999999999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.04  E-value=1.1e-11  Score=67.90  Aligned_cols=52  Identities=13%  Similarity=0.399  Sum_probs=43.6

Q ss_pred             HhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHH
Q psy3946          40 RNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLL   97 (127)
Q Consensus        40 ~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l   97 (127)
                      .|++ .|++++||.|  ..|++.|.....|.   ++|+++++|.|..|++.|....++
T Consensus         4 ~h~~-~H~~~k~~~C--~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            4 TDER-DSTNRASFKC--PVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCSS-SCCSSSEEEC--SSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hHHH-HcCCCCCccC--CCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            3443 3999999999  99999999877765   789999999999999999766543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.2e-10  Score=59.62  Aligned_cols=43  Identities=12%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGS-SGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCSSCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCC-CCCCCcCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            444 4999999999  999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=9.6e-11  Score=60.04  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=37.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            6 SGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcCCCCCeEC--CcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3999999999  999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=59.39  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            6 SGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSEEC--SSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             ccCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=59.51  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGS-SGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CSCCCCCEEC--TTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccC-CCCCCCCeec--cccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            443 3899999999  999999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.03  E-value=1.7e-10  Score=57.83  Aligned_cols=39  Identities=13%  Similarity=0.402  Sum_probs=36.9

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         4 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEEC--SSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccC--CCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4899999999  99999999999999999999999999884

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=56.86  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      +|+++++|.|..|++.|.+...|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            57778888888888888888888888888888775

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=59.37  Aligned_cols=40  Identities=15%  Similarity=0.278  Sum_probs=37.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEEC--SSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.1e-10  Score=59.76  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=37.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            6 SGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCBC--SSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCCcCeEC--CCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.8e-10  Score=58.41  Aligned_cols=42  Identities=19%  Similarity=0.418  Sum_probs=38.2

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGS-SGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSC-CCSCCCSEEC--SSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             Ccc-ccCCCCCeEC--CCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            444 3999999999  99999999999999999999999999884

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=59.41  Aligned_cols=40  Identities=18%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            6 SGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCBC--TTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCEEC--CccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3999999999  999999999999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=9.3e-11  Score=60.49  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             HHHcCCCCceecC--CCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          73 RQECGQLPRFHCS--LCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        73 ~~~h~~~~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      .++|+++++|.|.  .|++.|.....|..|+++|++++||.|..
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3578899999998  89999999999999999999999999964

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.1e-10  Score=59.75  Aligned_cols=43  Identities=19%  Similarity=0.267  Sum_probs=39.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGS-SGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-SSSSSCSSSC--CSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccc-ccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            443 3999999999  999999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=59.31  Aligned_cols=43  Identities=12%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++. |+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSS-GTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCC-CSSCCSSCC--SSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccC-CCCCCCcCC--CCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4433 899999999  999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=59.48  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGS-SGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSC-CCCSCCSEEC--SSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCC-CCCCCcCEEC--CCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            443 4899999999  999999999999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.2e-10  Score=59.66  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=39.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSS-GTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCC-CSSCCSEEE--TTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             cccc-CCCCCCeEC--cccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4443 999999999  999999999999999999999999999874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=58.39  Aligned_cols=42  Identities=10%  Similarity=0.260  Sum_probs=38.2

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGS-SGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSS-CCSCCCSEEC--TTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             Ccc-CCCCCCCeEC--CCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            443 4999999999  99999999999999999999999999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=58.52  Aligned_cols=40  Identities=15%  Similarity=0.271  Sum_probs=37.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         6 ~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            6 SGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCEEC--SSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             ccCCCCCCCC--CCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4899999999  999999999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=59.45  Aligned_cols=43  Identities=16%  Similarity=0.228  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGS-SGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCS-CCCCSSSBCC--SSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             ccc-CCCCCcCCCC--CCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            444 3899999999  999999999999999999999999999874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.2e-10  Score=57.38  Aligned_cols=39  Identities=13%  Similarity=0.302  Sum_probs=36.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         4 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSCSCCSCBC--TTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CcCCCCCeEC--CCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4899999999  99999999999999999999999999874

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=59.38  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            6 SGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCBC--SSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.2e-10  Score=59.66  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=37.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            6 SGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCTTCC--SSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCCcCeEC--CCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.3e-10  Score=59.47  Aligned_cols=43  Identities=12%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGS-SGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSS-SSSCCCSEEC--TTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCc-CcCCCcCccC--CCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            443 3899999999  999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=59.12  Aligned_cols=43  Identities=12%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGS-SGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCCCCEEC--SSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             Ccc-CCCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            443 4899999999  999999999999999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.4e-10  Score=59.42  Aligned_cols=43  Identities=16%  Similarity=0.294  Sum_probs=38.9

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++. |++++||.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         3 H~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSS-GTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCC-CCSCCCEEC--SSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccc-cCCCCCEEC--cccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            4444 999999999  999999999999999999999999999863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.4e-10  Score=58.54  Aligned_cols=40  Identities=13%  Similarity=0.238  Sum_probs=37.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            6 SGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             SCCCSCSCCC--SSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.00  E-value=3.6e-10  Score=54.21  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      |+++++|.|..|++.|.+...|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677778888888888888888888888877764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.9e-10  Score=58.87  Aligned_cols=40  Identities=18%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            6 SGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCSCCSCBC--TTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCEEC--CccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=4.3e-10  Score=56.79  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=37.5

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         4 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFC--NECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCC--SSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEEC--CCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            4889999999  999999999999999999999999999863

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=59.24  Aligned_cols=43  Identities=12%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGS-SGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCCCC--TTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccc-ccCCCCCeEC--CcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            443 3899999999  999999999999999999999999999874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=4.6e-10  Score=62.49  Aligned_cols=63  Identities=13%  Similarity=0.073  Sum_probs=56.6

Q ss_pred             CCccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCce
Q psy3946          17 GLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRF   82 (127)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~   82 (127)
                      +..+..+.+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|++.|.+++|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG-GCCSCSEEC--SSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH-cCCCCCEeC--CCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4445668889999999999999999976 999999999  99999999999999999999888764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=58.52  Aligned_cols=42  Identities=10%  Similarity=0.177  Sum_probs=38.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++ .|+++++|.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGS-SGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCC-CSSSSSSSCC--TTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCc-CCCCCcCeEC--CCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            443 3899999999  99999999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4e-10  Score=56.20  Aligned_cols=38  Identities=16%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEEC--SSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeEC--CCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4899999999  9999999999999999999999999987

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.97  E-value=4.7e-10  Score=53.89  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      |+++++|.|..|++.|.+...|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5667777777777777777777777777777664

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3.7e-10  Score=58.39  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=37.1

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchh
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQ  114 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~  114 (127)
                      .|.++++|.|..|++.|.+...|..|+++|++++||.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP   45 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCC
Confidence            4677899999999999999999999999999999999964

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.97  E-value=3.6e-10  Score=56.55  Aligned_cols=38  Identities=21%  Similarity=0.480  Sum_probs=36.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEEC--SSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeEC--CCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            4899999999  9999999999999999999999999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.9e-10  Score=58.26  Aligned_cols=42  Identities=12%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGS-SGHTRKRYEC--SKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCS-CCCCCSSEEC--TTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccc-ccCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            443 3899999999  99999999999999999999999999884

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=58.76  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=37.7

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            6 SGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCSSCCSCBC--SSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCcccCC--CCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4899999999  999999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6.1e-10  Score=56.97  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=37.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCC--SSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCC--CCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.96  E-value=2.8e-10  Score=55.40  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      |+++|++++||.|..|++.|.+...|..|+++|+|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            455678888888888888888888888888888764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=4.1e-10  Score=66.13  Aligned_cols=59  Identities=8%  Similarity=0.022  Sum_probs=54.2

Q ss_pred             ccchhhHhHhhHHHHHhHHhhcCCCcc--------eeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          25 VLDFEKEERMNDVYNRNMKKNFNDTGV--------FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~h~~~~p--------~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      +..|.+.|.....|.+|++..|.++++        |.|  ..|++.|.....|..|+++|++++||.|.
T Consensus        28 C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTC--SSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             ccccccccCCHHHHHHHHHHhccCCCCCCccceeccCC--CCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            557999999999999998765888887        999  99999999999999999999999999986

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.2e-10  Score=57.31  Aligned_cols=40  Identities=15%  Similarity=0.244  Sum_probs=37.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         6 ~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            6 SGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCSCCSEEE--TTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCcCccC--CCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            4899999999  999999999999999999999999999863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=58.01  Aligned_cols=39  Identities=18%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            6 SGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSSSCCSCEE--TTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             ccCCCcCeeC--CCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4999999999  99999999999999999999999999984

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=7.2e-10  Score=61.80  Aligned_cols=41  Identities=10%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHH-HHcCCCCceecCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHR-QECGQLPRFHCSL   86 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~-~~h~~~~~~~C~~   86 (127)
                      +++++||.|++..|++.|.....|..|+ ++|++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            7899999995556999999999999997 6899999998864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.95  E-value=9.9e-10  Score=65.27  Aligned_cols=55  Identities=24%  Similarity=0.230  Sum_probs=49.6

Q ss_pred             CccccCchHHHHHHHHcCCCCceecCCCCccC-CChHHHHHHHHhcCCCCCCCchhh
Q psy3946          60 NRVYSRRRSLSRHRQECGQLPRFHCSLCPYKS-KRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        60 ~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f-~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      ...|.....+..|+..+.+.++|.|..|++.| .....|..|+++| ++++|.|...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~C   68 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHC   68 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSS
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCC
Confidence            34667778899999999999999999999999 9999999999999 9999999764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.3e-10  Score=58.18  Aligned_cols=38  Identities=16%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCC--TTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeC--CCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4899999999  9999999999999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.4e-10  Score=57.49  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCC-CCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQ-LPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~-~~~~~C~   85 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++ +++|.|.
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            6 SGQKEKCFKC--NKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCSCCEEC--SSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccCCCCCEEC--cCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3899999999  9999999999999999999999 9999986

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=63.34  Aligned_cols=59  Identities=17%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCC
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLP   80 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~   80 (127)
                      +++...+..|.+.|.....|.+|++. |++++||.|  ..|++.|.....|..|++ .|+++.
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~-H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRL-LHAAQVFPC--KYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHT-TSCSSSEEC--TTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhh-ccCCCccCC--CCCCCEeCCHHHHHHhCcccCcCCC
Confidence            34556788899999999999999976 999999999  999999999999999975 787764

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.5e-10  Score=58.33  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGS-SGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCSSEE--TTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ccc-CCCCCCCeEC--CCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            443 3899999999  999999999999999999999999999863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.3e-10  Score=56.64  Aligned_cols=40  Identities=18%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBC--TTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3899999999  999999999999999999999999999863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=57.31  Aligned_cols=38  Identities=11%  Similarity=0.140  Sum_probs=36.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEEC--TTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeC--CCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            4899999999  9999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.2e-10  Score=58.68  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|..
T Consensus         3 h~~-~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            3 SGS-SGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCS-CSSCCCSCCC--SSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCc-CCCCCCCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            443 3999999999  999999999999999999999999999873

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=9.1e-10  Score=55.74  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      .|+++++|.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         6 ~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSEC--QECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCC--TTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcCeEC--CCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3899999999  99999999999999999999999999984

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.1e-10  Score=58.65  Aligned_cols=42  Identities=21%  Similarity=0.213  Sum_probs=38.3

Q ss_pred             hHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          41 NMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        41 ~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++ .|++++||.|  ..|++.|.....|..|+++|+++++|.|.
T Consensus         3 H~~-~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGS-SGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCC-CSCCCCSEEC--SSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccc-ccCCCCCeeC--cccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            443 3899999999  99999999999999999999999999986

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.2e-10  Score=58.05  Aligned_cols=39  Identities=18%  Similarity=0.405  Sum_probs=36.8

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|.
T Consensus         6 ~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            6 SGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCEEE--TTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCCCeEC--cccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4999999999  99999999999999999999999999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=2.9e-10  Score=57.02  Aligned_cols=38  Identities=11%  Similarity=0.162  Sum_probs=36.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCC--SSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEEC--CCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            4899999999  9999999999999999999999999987

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.3e-10  Score=69.15  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             cccCchHHHHHHHHcCCCCceecCCCCccCC-ChHHHHHHHHhcCC-CCCCCchhh
Q psy3946          62 VYSRRRSLSRHRQECGQLPRFHCSLCPYKSK-RRDLLKSHMKHGHK-LEHITEDQI  115 (127)
Q Consensus        62 ~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~-~~~~l~~H~~~h~g-~k~~~c~~~  115 (127)
                      .+.....+..|+++|+++++|.|..|++.|. ....|..|+++|++ +++|.|...
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C   60 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHC   60 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSS
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCC
Confidence            4555566788999999999999999999999 99999999999999 999999654

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.90  E-value=1.7e-09  Score=51.44  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=25.5

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLEHIT  111 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~  111 (127)
                      +||.|..|++.|...+.|..|+++|+|++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46788888888888888888888888888774

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=7.3e-10  Score=56.14  Aligned_cols=38  Identities=11%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceec
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC   84 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   84 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++||.|
T Consensus         6 ~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            6 SGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCSEEC--SSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ccCCCcCeEC--CCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            3999999999  9999999999999999999999999986

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.4e-10  Score=65.95  Aligned_cols=66  Identities=15%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             HHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          38 YNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        38 ~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      |..|.. ++.+.+|+.|  ..|++.|. ...|..|+ .|.+.+++.|..|++.|. ...|..|+++|.+++.
T Consensus         5 L~~H~~-~~c~~r~~~C--~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A            5 SSGHEE-TECPLRLAVC--QHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             CSCCCC-CCCCCCCEEC--SSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             HHhhCc-ccCCCcccCC--cccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            344543 3899999999  99999995 88899999 899999999999999877 5899999999998754

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.7e-09  Score=52.88  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=27.3

Q ss_pred             cCCCCceecC--CCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          76 CGQLPRFHCS--LCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        76 h~~~~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      |+++++|.|.  .|++.|.+.+.|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567788887  4888888888888888888888776

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=6.3e-11  Score=69.52  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      +|++++||.|  ..|++.|.....|..|+++|++++||+|..|.    ....|..|.++|.|
T Consensus        19 ~H~~~kpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQC--KHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEEC--SSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcC--CCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            3888999999  99999999999999999999999999998764    34455566777766

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=2.5e-09  Score=56.59  Aligned_cols=41  Identities=17%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHH-hcCCCCCCCchhh
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHITEDQI  115 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k~~~c~~~  115 (127)
                      .|+++++|.|..|++.|.....|..|++ +|++++||.|...
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   47 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW   47 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCC
Confidence            4678899999999999999999999997 9999999999754

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=2.7e-09  Score=51.39  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +|+++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3566677777777777777777777777777654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.83  E-value=3.5e-09  Score=56.27  Aligned_cols=55  Identities=11%  Similarity=0.339  Sum_probs=49.3

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      ..+..|.+.|.....|..|++. |.++++|.|  ..|++.|.....|..|+++|.+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSCCCEEC--SSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCCCCCccC--CCCCchhcCHHHHHHHHHHhcccC
Confidence            3466788899999999999976 999999999  999999999999999999988765

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=3.5e-09  Score=52.36  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=23.0

Q ss_pred             cCCCCceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          76 CGQLPRFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        76 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +++++||+|..  |+++|.+.+.|..|+++|+|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            45667777765  777777777777777777765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=4.1e-09  Score=50.71  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=26.4

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      .|+++++|.|..|++.|.+...|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3567778888888888888888888888887764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.7e-09  Score=51.00  Aligned_cols=34  Identities=29%  Similarity=0.566  Sum_probs=23.9

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      .|+++++|.|..|++.|.+...|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3566677777777777777777777777776653

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.81  E-value=3.8e-09  Score=51.97  Aligned_cols=38  Identities=13%  Similarity=0.183  Sum_probs=34.3

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |++++||.|  ..|++.|.....|..|+++|+++++|.+.
T Consensus         1 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTC--SFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEEC--TTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceEC--CCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            578899999  99999999999999999999999998753

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=51.13  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=24.2

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      .|+++++|.|..|++.|.+...|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3566677777777777777777777777776653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.79  E-value=3.7e-09  Score=54.67  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHH-hcCCCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHI  110 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k~~  110 (127)
                      +|+++++|.|..|++.|.+...|..|++ +|+++..-
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            3677778888888888888888888887 77776544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.2e-09  Score=51.55  Aligned_cols=34  Identities=12%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             HcCCCCceecCCCCccCCCh-HHHHHHHHhcCCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRR-DLLKSHMKHGHKLE  108 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~-~~l~~H~~~h~g~k  108 (127)
                      +|+++++|.|..|++.|.+. ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            45666777777777777777 77777777776653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=6.8e-09  Score=50.01  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=23.6

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      |.++++|.|..|++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            556677777777777777777777777777654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.77  E-value=6.7e-10  Score=58.85  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             HHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCcee
Q psy3946          36 DVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFH   83 (127)
Q Consensus        36 ~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~   83 (127)
                      ..+..|++. |+++++|.|  ..|++.|.....|..|+++|++++||.
T Consensus        10 ~~l~~h~~~-H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           10 PGTEKPRSR-SQSEQPATC--PICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             SCCCCCHHH-HTSSCCEEC--TTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cchhhHHHh-cCCCCCccC--CCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            345556655 999999999  999999999999999999999998873

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=4.9e-09  Score=58.57  Aligned_cols=59  Identities=14%  Similarity=0.324  Sum_probs=53.2

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .+..+.+..|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+++|+++.
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHG-GGCSCCEEC--SSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHh-cCCCCCeEC--CCCCcccCCHHHHHHHHHhcCCCC
Confidence            34567888899999999999999876 999999999  999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.5e-09  Score=52.11  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHH-HHhcCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSH-MKHGHKL  107 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H-~~~h~g~  107 (127)
                      +|++++||.|..|++.|.+...|..| +++|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            45566666666666666666666666 6666553

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.70  E-value=1.2e-09  Score=67.62  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=50.9

Q ss_pred             CcceeCCCCCCCcccc------CchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          49 TGVFQCPVPNCNRVYS------RRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~------~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      .+++.|  ..|.+.|.      ....|..|+ .|++.+||.|..|++.|.....|..|+++|  ++||.|....
T Consensus        39 ~~~~~c--~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~  107 (129)
T 2wbt_A           39 QKRLIR--AIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCK  107 (129)
T ss_dssp             HHHHHH--HHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTC
T ss_pred             hCcccc--hhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCC
Confidence            345667  66666555      556677776 588899999999999999999999999998  8999997643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.70  E-value=9.4e-09  Score=54.57  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      ....+..|.+.|.....|.+|++. |++++||.|  ..|++.|.....|..|++.|.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKC--EFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHH-HHCCCCEEC--SSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHH-cCCCCCcCC--CCCcchhCCHHHHHHHHHHhc
Confidence            356778899999999999999876 999999999  999999999999999998774

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.68  E-value=2.2e-08  Score=47.69  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCc
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      |+++++|.|  ..|++.|.....|..|+++|++++|
T Consensus         2 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVC--ALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEEC--SSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeEC--CCCcchhCCHHHHHHHHHHHcCCCC
Confidence            789999999  9999999999999999999998764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.67  E-value=2.4e-08  Score=47.62  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCc
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      +|++++||.|  ..|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVC--RICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeC--CCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3789999999  9999999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.66  E-value=6.9e-09  Score=50.67  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=16.0

Q ss_pred             CCCCceecCCCCccCCChHHHHHHH
Q psy3946          77 GQLPRFHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        77 ~~~~~~~C~~C~k~f~~~~~l~~H~  101 (127)
                      ++++||.|..|+++|.+.+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4556666666666666666666665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=49.01  Aligned_cols=33  Identities=15%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             cCCCCceecCC--CCccCCChHHHHHHHHhcCCCC
Q psy3946          76 CGQLPRFHCSL--CPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        76 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      |+++++|.|..  |++.|.+.+.|..|+++|+|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            45566666663  7777777777777776666653

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.65  E-value=5.4e-10  Score=61.06  Aligned_cols=43  Identities=7%  Similarity=0.107  Sum_probs=37.7

Q ss_pred             HHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          71 RHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        71 ~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      .|+++|++++||.|..|++.|.+...|.   ++|++++||.|....
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~   46 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCH   46 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSC
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCC
Confidence            4677899999999999999999988886   899999999997654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=1.8e-08  Score=49.01  Aligned_cols=35  Identities=20%  Similarity=0.544  Sum_probs=32.2

Q ss_pred             cCCCcceeCCCC--CCCccccCchHHHHHHHHcCCCCce
Q psy3946          46 FNDTGVFQCPVP--NCNRVYSRRRSLSRHRQECGQLPRF   82 (127)
Q Consensus        46 h~~~~p~~C~~~--~C~~~f~~~~~l~~h~~~h~~~~~~   82 (127)
                      |++++||.|  .  .|++.|.....|..|+++|+++++|
T Consensus         1 H~~~k~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLC--TAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEEC--CCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceEC--CCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            578999999  7  6999999999999999999998876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.63  E-value=2.5e-08  Score=53.48  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=48.2

Q ss_pred             ccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHH-HHcCCC
Q psy3946          23 LSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHR-QECGQL   79 (127)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~-~~h~~~   79 (127)
                      ..+..|.+.|.....|.+|++. |+++++|.|  ..|++.|.....|..|+ ..|++.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHT-TTSSCSEEC--TTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCCCCccccCCHHHHHHHHHH-hCCCCCccC--CCCCCccCCHHHHHHHHHHHcCCc
Confidence            4567789999999999999876 999999999  99999999999999997 588764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.62  E-value=2.5e-08  Score=55.62  Aligned_cols=55  Identities=20%  Similarity=0.331  Sum_probs=48.9

Q ss_pred             ccccccc--chhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          20 EEVLSVL--DFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        20 ~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +..+.+.  .|.+.|.....|.+|++. |.++++|.|  ..|++.|.....|..|+++|+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~~~~~~C--~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQC--RICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHH-HHCCCCEEC--TTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHh-hCCCCCeEC--CCCCchhCCHHHHHHHHHhcC
Confidence            4556775  699999999999999866 999999999  999999999999999998874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=2.6e-08  Score=48.13  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCc
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++|
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSC--PVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEE--TTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCC--CCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4899999999  9999999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.61  E-value=1.2e-09  Score=51.59  Aligned_cols=31  Identities=29%  Similarity=0.565  Sum_probs=25.0

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      +||.|..|++.|.+.+.|..|+++|++++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4678888888888888888888888888876

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.61  E-value=3.5e-08  Score=53.89  Aligned_cols=57  Identities=14%  Similarity=0.314  Sum_probs=50.1

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhc-CCCcceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNF-NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      +....+..|.+.|.....|.+|+...| .++++|.|  ..|++.|.....|..|++.+.+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEEC--TTTCCEESCHHHHHHHHHHHTC
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeEC--CCCCCccCCHHHHHHHHHHHcC
Confidence            345678889999999999999987757 68999999  9999999999999999987654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=2.7e-08  Score=54.58  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCC-CCCccccCchHHHHHHHHcCCCCc
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVP-NCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~-~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      ..+.+..|.+.|. ...|..|++.  ++++||.|  . .|++.|.....|..|+++|.+.++
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~--~~~~p~~C--~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ--CPRLPVAC--PNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH--CSSSEEEC--TTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCeeccccCCccC-HHHHHHHHHH--cCCcCccC--CcccCcccccHHHHHHHHHhhcccCc
Confidence            4467888999999 9999999865  89999999  9 999999999999999999877654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=7.3e-08  Score=53.35  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +.+++||.|..|++.|.+...|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            455667777777777777777777777776654

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.60  E-value=3.7e-08  Score=46.61  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCCcee
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFH   83 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~   83 (127)
                      +||.|  ..|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFAC--PECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCC--SSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccC--CCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            57999  999999999999999999999999885

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.60  E-value=4.3e-08  Score=44.73  Aligned_cols=29  Identities=10%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ++|.|..|++.|.....|..|+++|++++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            57778888888888888888887777654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=2.7e-09  Score=62.47  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=39.9

Q ss_pred             HHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          73 RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        73 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      ..+|+++++|.|..|++.|.+...|..|+++|++++||.|....
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            35789999999999999999999999999999999999996644

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=5.3e-08  Score=48.04  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +++++||.|++..|++.|.....|..|+++|++.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            7889999992224999999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.58  E-value=6e-08  Score=43.96  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            36788888888888888888888887764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.56  E-value=6e-08  Score=44.21  Aligned_cols=30  Identities=30%  Similarity=0.689  Sum_probs=23.5

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      ++|.|..|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            367888888888888888888888877664

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.55  E-value=6e-08  Score=53.90  Aligned_cols=57  Identities=19%  Similarity=0.291  Sum_probs=47.1

Q ss_pred             ccccccccc--hhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          19 SEEVLSVLD--FEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        19 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      ......+..  |.+.|.....|.+|++. |+++++|.|++..|++.|.....|..|+++|
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHH-HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHh-cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            344566655  99999999999999966 9999999993234999999999999998765

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.55  E-value=4.3e-08  Score=44.53  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=20.8

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            36777777777777777777777777653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=5.9e-09  Score=53.59  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=23.8

Q ss_pred             HHcCCCCceecC--CCCccCCChHHHHHHHHhcCCCC
Q psy3946          74 QECGQLPRFHCS--LCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        74 ~~h~~~~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ..|++++||.|.  .|++.|.+.+.|..|+++|+|++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            346667777774  57777777777777777777654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=6.7e-08  Score=54.55  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCC---CcceeCCCCCCCccccCchHHHHHH-HHcCCCCceecC
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFND---TGVFQCPVPNCNRVYSRRRSLSRHR-QECGQLPRFHCS   85 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~~p~~C~~~~C~~~f~~~~~l~~h~-~~h~~~~~~~C~   85 (127)
                      +..+.+..|.+.|.....|.+|++. |.+   +++|.|  ..|++.|.....|..|+ ..|.+.++....
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH-HHHHTTTCCEEC--TTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHH-hhccCCCcccCC--CCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            4567788899999999999999876 775   899999  99999999999999999 578887765543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.52  E-value=1.1e-07  Score=44.33  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CceecC--CCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCS--LCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            567777  67777777777777777777654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.52  E-value=6.3e-08  Score=43.82  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ++|.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            36778888888888888888888777664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.52  E-value=9.4e-08  Score=44.22  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             CceecC--CCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCS--LCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|.  .|++.|...+.|..|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            467776  78888888888888888887764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-07  Score=45.37  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .|.+++||.|  ..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKC--PQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEEC--SSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCC--CCCCcccCCHHHHHHHHHHccCCC
Confidence            4889999999  999999999999999999998763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.50  E-value=6.6e-08  Score=43.71  Aligned_cols=29  Identities=24%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|++.|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46777788888887788888887777654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.50  E-value=1.3e-07  Score=53.18  Aligned_cols=61  Identities=15%  Similarity=0.306  Sum_probs=51.8

Q ss_pred             ccccccccchhhHhHhhHHHHHhHHhhcCCC-cceeCCCCCCCccccCchHHHHHHHH-cCCCCc
Q psy3946          19 SEEVLSVLDFEKEERMNDVYNRNMKKNFNDT-GVFQCPVPNCNRVYSRRRSLSRHRQE-CGQLPR   81 (127)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~p~~C~~~~C~~~f~~~~~l~~h~~~-h~~~~~   81 (127)
                      .+..+.+..|.+.|.....|.+|+...|.++ ++|.|  ..|++.|.....|..|++. |....|
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEEC--SSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCC--CCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            3456788899999999999999997658875 89999  9999999999999999996 554444

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.3e-07  Score=45.26  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKC--SLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEEC--SSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccC--CCCCchhCCHHHHHHHHHHhccCC
Confidence            4889999999  999999999999999999998753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.47  E-value=7.3e-08  Score=46.46  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=30.5

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      .|++++||.|  ..|++.|.....|..|+++|+++
T Consensus         5 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            5 GSTGIKPFQC--PDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             TTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             cCCCCCCccC--CCCCcccCcHHHHHHHHHHhccC
Confidence            3899999999  99999999999999999998763

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.3e-07  Score=45.25  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.0

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .|++++||.|  ..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDC--HICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeEC--CCCCCccCCHHHHHHHHHHhcCCC
Confidence            3789999999  999999999999999999998753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.6e-07  Score=45.26  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             hcCCCcceeCCCCCCCccccCc-hHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRR-RSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~-~~l~~h~~~h~~~~   80 (127)
                      .|++++||.|  ..|++.|... ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKC--PYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEEC--SSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeEC--CCCChhhccCHHHHHHHHHhcCCCC
Confidence            4889999999  9999999999 99999999998753

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.5e-08  Score=45.45  Aligned_cols=29  Identities=14%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            36777777777777777777777777653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=2.1e-07  Score=44.41  Aligned_cols=34  Identities=12%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .|.++++|.|  ..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLC--DMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBC--TTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeec--CcCCCCcCchHHHHHHHHHhcCCC
Confidence            3788999999  999999999999999999998763

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.43  E-value=1.5e-07  Score=42.33  Aligned_cols=27  Identities=15%  Similarity=0.432  Sum_probs=18.9

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      ++|.|..|++.|.+...|..|+++|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            567777777777777777777776653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2.7e-07  Score=44.13  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .|.+++||.|  ..|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEEC--TTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEEC--CCCCceeCCHHHHHHHHHHhCCCC
Confidence            3788999999  999999999999999999998753

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.41  E-value=1.7e-07  Score=45.34  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             cCCCcceeCCCC--CCCccccCchHHHHHHHHcCCCC
Q psy3946          46 FNDTGVFQCPVP--NCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        46 h~~~~p~~C~~~--~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      |++++||.|  .  .|++.|.....|..|+++|++++
T Consensus         3 ~~~~k~~~C--~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHIC--HIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEEC--CSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCC--CCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            789999999  7  59999999999999999998763

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.41  E-value=1.7e-07  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHH-HcCCCCc
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPR   81 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~   81 (127)
                      +|++++||.|  ..|++.|.....|..|++ +|+++..
T Consensus         1 ~Ht~~kp~~C--~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYAC--DICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEEC--TTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEEC--CCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            3889999999  999999999999999999 9988753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.40  E-value=1.6e-07  Score=42.82  Aligned_cols=29  Identities=34%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             CceecCCCCccCCChHHHHHH-HHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSH-MKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H-~~~h~g~k  108 (127)
                      +||.|..|++.|.+...|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            367788888888888888888 56777654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.76  E-value=3.5e-08  Score=45.14  Aligned_cols=29  Identities=14%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            46777777777777777777777777653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=2.4e-07  Score=41.37  Aligned_cols=25  Identities=32%  Similarity=0.754  Sum_probs=16.8

Q ss_pred             CceecCCCCccCCChHHHHHHHHhc
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      +||.|..|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4666666666666666666666665

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.39  E-value=1.8e-07  Score=41.66  Aligned_cols=27  Identities=19%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      ||.|..|++.|.+...|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            467777888887777788887777653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=3.7e-07  Score=44.07  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHH-HHHcCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRH-RQECGQL   79 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h-~~~h~~~   79 (127)
                      .|++++||.|  ..|++.|.....|..| ++.|++.
T Consensus         3 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYC--SQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEEC--SSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeEC--CCCCcccCCHHHHHHHHHHHccCc
Confidence            4899999999  9999999999999999 8888764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.36  E-value=2e-07  Score=41.76  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=18.1

Q ss_pred             CceecCCCCccCCChHHHHHHHHhc
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      +||.|..|++.|.+.+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5677777777777777777777665

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.33  E-value=2e-07  Score=45.35  Aligned_cols=32  Identities=25%  Similarity=0.570  Sum_probs=28.5

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSL   86 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   86 (127)
                      +.+++||.|  ..|++.|.....|..|+       ||.|..
T Consensus         3 ~~gekp~~C--~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMC--LPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEE--TTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeEC--CCCCCccCCHhHccCcC-------CeECcC
Confidence            578999999  99999999999999998       677654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.9e-06  Score=47.22  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=45.8

Q ss_pred             eeCCCCCCCccccCchHHHHHHH-HcCCCC------ceecC--CCCccCCChHHHHHHHHhcC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQ-ECGQLP------RFHCS--LCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~------~~~C~--~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +.|.|..|++.|.....|..|+. .|.+.+      +|.|.  .|++.+.....|..|+++.+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            46788999999999999999984 788765      79997  59998888899999998653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=4.8e-07  Score=46.17  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      |++++||.|.+..|++.|.....|..|+++|++++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            89999999933379999999999999999998864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.25  E-value=1e-06  Score=40.80  Aligned_cols=30  Identities=20%  Similarity=0.615  Sum_probs=26.9

Q ss_pred             CcceeCCCC--CCCccccCchHHHHHHHHcCCCC
Q psy3946          49 TGVFQCPVP--NCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        49 ~~p~~C~~~--~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      ++||.|  .  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSC--DHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCC--CCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcC--cCCCCCCccCCHHHHHHHHHHccCCC
Confidence            468999  7  89999999999999999998763

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=3.1e-09  Score=59.11  Aligned_cols=58  Identities=9%  Similarity=0.011  Sum_probs=49.5

Q ss_pred             cccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCC
Q psy3946          20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC   87 (127)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   87 (127)
                      +....+..|.+.|.....|..        +++|.|  ..|++.|.....|..|+++|+++++|.|..|
T Consensus        16 ~~~~~C~~C~k~f~~~~~l~~--------~~~~~C--~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           16 DRSQKCSKCGIIFIRRSTLSR--------RKTPMC--EKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSEEECSSSCCEEECCCCCCC--------SSSCCC--HHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCeeCCcccchhCCHHHhCc--------CCCCCC--CCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            455677778888877666543        789999  9999999999999999999999999999987

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=1.4e-06  Score=39.39  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=27.0

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      ++||.|  ..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C--~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQC--DYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHHhccCC
Confidence            468999  999999999999999999998753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.17  E-value=1.2e-06  Score=40.27  Aligned_cols=31  Identities=23%  Similarity=0.506  Sum_probs=26.4

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|++..|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            4799933399999999999999999998763

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.46  E-value=2.4e-07  Score=40.95  Aligned_cols=25  Identities=20%  Similarity=0.502  Sum_probs=16.7

Q ss_pred             CceecCCCCccCCChHHHHHHHHhc
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      +||.|..|++.|.+...|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3566777777777777777766655

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.16  E-value=6e-08  Score=45.49  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=28.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCCce
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRF   82 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~   82 (127)
                      +||.|  ..|++.|.....|..|+++|++++||
T Consensus         1 kp~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFAC--PACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSS--SSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCC--CCCCcccCCHHHHHHHHHHHccCCCC
Confidence            47999  99999999999999999999999876

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.15  E-value=1.7e-06  Score=47.80  Aligned_cols=40  Identities=18%  Similarity=0.536  Sum_probs=33.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCP   88 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~   88 (127)
                      +.+++||.|  ..|++.|.....|..|+++|++.. ..+..+.
T Consensus         8 ~~~ekpy~C--~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPC--GLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCC--TTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCC--CCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            678899999  999999999999999999999864 3444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.15  E-value=1.6e-06  Score=39.02  Aligned_cols=29  Identities=24%  Similarity=0.444  Sum_probs=26.3

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..|+++|++++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFAC--PECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEEC--SSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccC--CCCCchhCCHHHHHHHHHHhcCCC
Confidence            57999  999999999999999999998753

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.13  E-value=2.2e-06  Score=38.44  Aligned_cols=29  Identities=28%  Similarity=0.590  Sum_probs=26.2

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..|+++|++++
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBC--TTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeEC--CCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999  999999999999999999998753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.11  E-value=1.8e-06  Score=38.71  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=17.2

Q ss_pred             ceecC--CCCccCCChHHHHHHHHhcCC
Q psy3946          81 RFHCS--LCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        81 ~~~C~--~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      +|.|.  .|++.|...+.|..|+++|+|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            56666  677777666677777666653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=3.2e-06  Score=37.43  Aligned_cols=27  Identities=19%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      ++||.|  ..|++.|.....|..|+++|+
T Consensus         1 ek~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSC--SLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEEC--SSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccC--CCcChhhCCHHHHHHHHHHcc
Confidence            468999  999999999999999999874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.08  E-value=3.3e-06  Score=38.01  Aligned_cols=30  Identities=17%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCCc
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLPR   81 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   81 (127)
                      ++|.|  ..|++.|.....|..|+++|+++++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQC--QYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccC--CCCCCccCCHHHHHHHHHHHccCCC
Confidence            47999  9999999999999999999987653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.07  E-value=2.3e-06  Score=38.34  Aligned_cols=29  Identities=21%  Similarity=0.519  Sum_probs=26.2

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C--~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKC--RECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEEC--TTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccC--CCCCCccCChhHHHHHHHHhcCCC
Confidence            47999  999999999999999999998753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=2.7e-06  Score=37.96  Aligned_cols=28  Identities=14%  Similarity=0.430  Sum_probs=25.3

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      ++||.|  ..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSC--SVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEEC--SSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccC--CCCCcccCCHHHHHHHHHhcCC
Confidence            468999  9999999999999999998864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.04  E-value=2.7e-06  Score=38.04  Aligned_cols=29  Identities=17%  Similarity=0.384  Sum_probs=26.1

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..|+++|++++
T Consensus         1 k~~~C--~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKC--PHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCC--SSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcC--CCCCcccCCHHHHHHHHHHhccCC
Confidence            57999  999999999999999999987753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.98  E-value=3e-06  Score=37.69  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      ++||.|  ..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRC--PLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEE--TTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCC--CCCCcccCCHHHHHHHHHhcC
Confidence            468999  999999999999999998774

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.20  E-value=1.1e-06  Score=39.70  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +||.|  ..|++.|.....|..|+++|+++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQC--VMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            47999  99999999999999999998875

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=39.57  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=26.1

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      ++||.|  ..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVC--IHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            368999  99999999999999999998765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.91  E-value=6.1e-06  Score=36.33  Aligned_cols=26  Identities=27%  Similarity=0.695  Sum_probs=23.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      ||.|  ..|++.|.....|..|+++|++
T Consensus         1 ~~~C--~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKC--GLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBC--SSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccC--CCCCCcCCCHHHHHHHHHHcCC
Confidence            5889  9999999999999999999876

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.88  E-value=6.7e-06  Score=37.11  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=25.5

Q ss_pred             cceeCCCCCCCccccCchHHHHH-HHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRH-RQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h-~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..| +++|++++
T Consensus         1 k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYAC--GLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBC--TTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCC--cccCcccCChHHHHHHHHHHccCCC
Confidence            47999  9999999999999999 67888753

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=3e-07  Score=51.96  Aligned_cols=46  Identities=17%  Similarity=0.052  Sum_probs=40.3

Q ss_pred             HHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCCCchhh
Q psy3946          68 SLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQI  115 (127)
Q Consensus        68 ~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~  115 (127)
                      .|..|+..+.+.+++.|..|++.| ....|..|+ .+.+++|+.|...
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C   49 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNC   49 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSS
T ss_pred             HHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccC
Confidence            456777789999999999999999 589999999 8999999988754

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.84  E-value=9.6e-06  Score=36.20  Aligned_cols=27  Identities=37%  Similarity=0.768  Sum_probs=24.2

Q ss_pred             cceeCCCC--CCCccccCchHHHHHHHHcCC
Q psy3946          50 GVFQCPVP--NCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        50 ~p~~C~~~--~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      ++|.|  .  .|++.|.....|..|+++|++
T Consensus         1 k~~~C--~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVC--HFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEE--CSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCC--cCCcCcCccCCHHHHHHHHHHhCC
Confidence            47899  7  999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.92  E-value=4.3e-06  Score=36.65  Aligned_cols=26  Identities=15%  Similarity=0.510  Sum_probs=23.4

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +||.|  ..|++.|.....|..|+++|+
T Consensus         1 kp~~C--~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVC--ERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999  999999999999999998763

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.68  E-value=5e-05  Score=41.44  Aligned_cols=52  Identities=12%  Similarity=0.151  Sum_probs=44.8

Q ss_pred             cccchhhHhHhhHHHHHhHHhhcCCCc------ceeCCCCCCCccccCchHHHHHHHH
Q psy3946          24 SVLDFEKEERMNDVYNRNMKKNFNDTG------VFQCPVPNCNRVYSRRRSLSRHRQE   75 (127)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~h~~~~------p~~C~~~~C~~~f~~~~~l~~h~~~   75 (127)
                      .+.+|.+.|...+.|..|+...|.+.+      +|.|.|..|++.+.....|..|+++
T Consensus         5 ~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            5 KWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             eeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            356788899999999999876698766      8999999999999998999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.81  E-value=0.00023  Score=43.80  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=15.4

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHH
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      |+|.++|.|..|++.|.....|..|++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHh
Confidence            445555666666666666655555544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.99  E-value=0.0013  Score=40.52  Aligned_cols=29  Identities=21%  Similarity=0.540  Sum_probs=26.5

Q ss_pred             hhcCCCcceeCCCCCCCccccCchHHHHHHH
Q psy3946          44 KNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        44 ~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      ..|+|+++|.|  ..|++.|.+...|..|++
T Consensus        43 ed~tGekpfyC--~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           43 PDLPGGGLHRC--LACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSSGGGGCSEE--TTTTEECSSHHHHHHHTT
T ss_pred             ccCCCCcceEc--ccCcchhCCHHHHHHHHh
Confidence            34899999999  999999999999999976

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.61  E-value=0.017  Score=29.18  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=12.9

Q ss_pred             ceecCCCCccCCChHHHHHHHH
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      +|.|+.|+..|.....|+.|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4555556555555555665555

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.79  E-value=0.094  Score=32.14  Aligned_cols=52  Identities=21%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHH--Hc-------------------------------CCCCceecCCCCccCCChH
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQ--EC-------------------------------GQLPRFHCSLCPYKSKRRD   95 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~--~h-------------------------------~~~~~~~C~~C~k~f~~~~   95 (127)
                      -+++.|  ..|.-.|.+...+..|..  .|                               .+...|-|..|...|....
T Consensus        30 ~~~~~C--~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~  107 (127)
T 1zu1_A           30 FSDTQC--KVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPV  107 (127)
T ss_dssp             BCSSEE--TTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHH
T ss_pred             CCCCcC--cCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHH
Confidence            356889  999998888888887762  22                               2345678999999999999


Q ss_pred             HHHHHHH
Q psy3946          96 LLKSHMK  102 (127)
Q Consensus        96 ~l~~H~~  102 (127)
                      .+..|..
T Consensus       108 ~~~~H~~  114 (127)
T 1zu1_A          108 VAESHYI  114 (127)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9998875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.17  E-value=0.061  Score=34.39  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      .-++..|  ..|+..+. ...|..|....-+.+...|..|+..+ ....+..|..++.|+.++
T Consensus       107 ~~~~v~C--~~C~~~~~-r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          107 EFALMDC--PQCQRPFQ-KFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TTSEEEC--TTTCCEEE-GGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHHTTCCC----
T ss_pred             CceeeEC--CCCChHHH-HHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHHHhCcChhhh
Confidence            3456789  89988774 55688998777778888999998876 445789999999988765

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.09  E-value=0.1  Score=26.34  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=23.4

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      .+|.|  +.|+..|.....|+.|++..-+
T Consensus        11 ~~~~C--PrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKIC--PRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCC--TTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeC--CcccccccchHHHHhhhhhcCc
Confidence            57899  9999999999999999985433

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=92.67  E-value=0.026  Score=32.38  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             eecCCCCccCCChHHHHHHHHhcCCCCCCCchhhh
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQII  116 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~g~k~~~c~~~~  116 (127)
                      ..|..||+.|.   .|.+|+.+++|..|....+.+
T Consensus        22 iiClecGK~fK---~LkRHL~~~hgltpeeYR~kw   53 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHHSMTPEEYREKW   53 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTTCSCHHHHHHHT
T ss_pred             eEecccchhhH---HHHHHHHHccCCCHHHHHHHh
Confidence            56777777766   366777777777666555544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.79  E-value=0.71  Score=21.53  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=12.9

Q ss_pred             eecCCCCccCCChHHHHHHHHh
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      |.|+.|-+.|.....|..|-..
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHHHh
Confidence            5566666666666666665543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.25  E-value=0.59  Score=26.18  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=36.6

Q ss_pred             CCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHH
Q psy3946          47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        47 ~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~  101 (127)
                      ...--|.|  ..|+..+... .+..|.....+...|.|..|++.|.. ..++.|.
T Consensus         6 ~~MV~F~C--~~Cgd~lKK~-kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A            6 SGMVFFTC--NACGESVKKI-QVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             CCCCEEEE--SSSCCEEETT-HHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             CceeEEEc--CCCCCeeecc-cchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            34456899  9999877755 58888766555557999999999974 4455553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=81.22  E-value=3.1  Score=19.57  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=16.5

Q ss_pred             CceecCCCCccCCChHHHHHHHHh
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      ..+.|..|.-+|.....+..|.+.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            346677777777777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	4e-04

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (77), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 52  FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
           + C    C + ++ +    RH      L  + C +C  K K +  L  HMK
Sbjct: 4   YPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.39
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.28
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.25
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.21
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.21
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.19
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.08
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.08
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.06
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.04
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.03
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.98
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.98
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.98
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.97
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.96
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.92
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.9
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.89
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.8
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.74
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.72
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.65
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.55
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.35
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.3
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.1
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.03
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.02
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.92
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.87
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.82
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.8
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.72
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.71
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.64
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.63
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.62
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.4
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.35
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.27
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.24
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.19
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.16
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.15
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.12
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.08
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.07
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.8
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.78
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.77
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.73
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.58
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.53
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.43
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.33
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.0
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.87
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.85
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.74
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.49
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.42
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.28
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.72
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.67
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.13
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.75
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.31
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.1
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.09
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.82
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.2
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	92.13
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	91.83
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.68
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	91.63
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.63
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	89.09
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.44
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	84.84
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.32
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	81.06

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-17  Score=87.52  Aligned_cols=53  Identities=25%  Similarity=0.518  Sum_probs=51.3

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCccCCChHHHHHHHHhc
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      ++||.|  . ||+.|.....|..|+++|++++||.|..|+++|.+.+.|..|+++|
T Consensus         1 EK~y~C--~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC--Q-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC--T-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC--C-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999  8 9999999999999999999999999999999999999999999886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-14  Score=69.94  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             HHHHHcCCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          71 RHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        71 ~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +|+.+|++++||.|..|||+|.+.+.|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            3667899999999999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=67.46  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=25.8

Q ss_pred             CCceecCCCCccCCChHHHHHHHH-hcCCCCCCCch
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMK-HGHKLEHITED  113 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~-~h~g~k~~~c~  113 (127)
                      ++||+|..||++|.+.+.|..|++ +|+|+|||.|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            567777777777777777777764 57777777774

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-13  Score=65.29  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=27.1

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +|++++||.|..|+++|.+.+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888888888888888888888888888876

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.5e-13  Score=63.34  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             HHcCCCCceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          74 QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        74 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      ++|+|++||+|..|+++|.+.+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            36778888888888888888888888888877653

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=6.7e-13  Score=64.29  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             HHHHcCCCCceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          72 HRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        72 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      |.++|+|++||+|..|+++|.+.+.|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45678888888888888888888888888888764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.25  E-value=2.5e-12  Score=58.75  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=25.2

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|+++|.+.+.|.+|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888988888886

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.3e-12  Score=61.84  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=34.2

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHH-HcCCCCceecCC
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQLPRFHCSL   86 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~   86 (127)
                      .++||.|  ..|++.|....+|..|++ +|++++||+|.+
T Consensus         2 ~~Kpy~C--~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccC--CCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999  999999999999999986 799999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.9e-12  Score=60.16  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             cCCCCceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          76 CGQLPRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        76 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      |+|++||+|..|++.|.+.+.|.+|+++|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4555666666666666666666666665554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.4e-12  Score=57.52  Aligned_cols=29  Identities=31%  Similarity=0.638  Sum_probs=25.0

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|..|+++|.+.+.|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888876

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.3e-12  Score=60.57  Aligned_cols=33  Identities=15%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             HcCCCCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          75 ECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        75 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +|+|++||+|..|++.|.+.+.|..|++.++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            578888888888888888888888887655543

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8e-12  Score=59.83  Aligned_cols=34  Identities=24%  Similarity=0.715  Sum_probs=21.1

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcCCCCceecC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCS   85 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   85 (127)
                      |.|++..|++.|.....|..|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            4555555666666666666666666666666654

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=8.3e-12  Score=56.35  Aligned_cols=28  Identities=25%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             CCceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      ++||+|..|++.|.+.+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4677777777777777777777777765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.1e-11  Score=57.16  Aligned_cols=32  Identities=19%  Similarity=0.444  Sum_probs=30.9

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      |+|++||.|  ..|++.|...+.|..|+++|+|+
T Consensus         2 HTgekpy~C--~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGC--VECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeC--CCCCCEeCchHHhHhhccccCCC
Confidence            899999999  99999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=3.7e-12  Score=64.72  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=18.4

Q ss_pred             cCCCCceecCC--CCccCCChHHHHHHHHhcCCCC
Q psy3946          76 CGQLPRFHCSL--CPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        76 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      |++++||.|.+  |++.|.+.+.|..|+++|+|||
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            55555555544  5555555555555555555553

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-11  Score=63.16  Aligned_cols=52  Identities=13%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             ccccccchhhHhHhhHHHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          21 EVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      ....+ +|.+.|.....|..|++. |+|++||.|  ..|++.|.....|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~-Ht~ekpy~C--~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSM-HLGLRPYGC--GVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHH-HSCCCSEEC--TTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhc-cccccCCcC--CCcCCEecCHHHHHHHHhcC
Confidence            45667 599999999999999865 999999999  99999999999999999876

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4e-11  Score=57.32  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             eecCC--CCccCCChHHHHHHHHhcCCCCCCCch
Q psy3946          82 FHCSL--CPYKSKRRDLLKSHMKHGHKLEHITED  113 (127)
Q Consensus        82 ~~C~~--C~k~f~~~~~l~~H~~~h~g~k~~~c~  113 (127)
                      |.|..  |++.|.+.+.|.+|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            77876  999999999999999999999999995

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.4e-11  Score=58.99  Aligned_cols=33  Identities=21%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      .|++++||.|  ..|++.|...+.|..|+++|+|+
T Consensus         6 ~Ht~ekpy~C--~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           6 QQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCCCCCEec--CCCCceeeCHHHHHHhCccCCCC
Confidence            4999999999  99999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.4e-11  Score=54.71  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=16.5

Q ss_pred             CceecC--CCCccCCChHHHHHHHHhcCCCC
Q psy3946          80 PRFHCS--LCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        80 ~~~~C~--~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +||.|.  .|+++|.+.+.|..|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            355553  36666666666666666666554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.1e-10  Score=55.28  Aligned_cols=32  Identities=16%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             cCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          46 FNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        46 h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      |+|++||.|  ..|++.|....+|..|+++|+..
T Consensus         2 ~TGekPy~C--~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccC--CCCCCcccChHHHHHHccccCCc
Confidence            799999999  99999999999999999999875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.8e-10  Score=52.66  Aligned_cols=28  Identities=21%  Similarity=0.446  Sum_probs=17.1

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +||+|.+  |+++|.+.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            3566655  666666666666666666654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.4e-11  Score=51.63  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=18.1

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +||+|..|||+|.+.+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            46777777777777777777777663

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.3e-10  Score=52.32  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=27.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +||.|++.+|++.|.....|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            689997777999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=1.3e-10  Score=58.80  Aligned_cols=42  Identities=21%  Similarity=0.420  Sum_probs=35.8

Q ss_pred             HHHHhHHhhcCCCcceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          37 VYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        37 ~~~~~~~~~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      .+.+++ . |++++||.|.+..|++.|....+|..|+++|+|++
T Consensus         6 ~l~~h~-~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYV-K-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSC-E-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchh-h-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            345555 3 99999999955569999999999999999999975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.9e-10  Score=54.39  Aligned_cols=33  Identities=12%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +|+|++||.|  ..|++.|.....|..|+++|.++
T Consensus         2 ~HTgekPy~C--~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEEC--CCCCCCcCCHhHHHHhCcccCCC
Confidence            4999999999  99999999999999999999765

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.7e-10  Score=52.80  Aligned_cols=28  Identities=18%  Similarity=0.346  Sum_probs=15.2

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +||.|..  |+++|.+.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            3555544  555555555555555555554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.93  E-value=3e-10  Score=51.61  Aligned_cols=29  Identities=28%  Similarity=0.590  Sum_probs=27.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|.....|..|+++|+|++
T Consensus         1 kp~~C--~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCC--TTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCC--CCCCCCCCCchHcccccCcccCCC
Confidence            68999  999999999999999999999975

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.8e-10  Score=52.08  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +||.|++..|++.|....+|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            689998888999999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=2.8e-10  Score=51.19  Aligned_cols=28  Identities=32%  Similarity=0.532  Sum_probs=26.7

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      ++||.|  ..|++.|....+|..|+++|+|
T Consensus         1 EKPy~C--~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQC--RICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccC--CCCcCEecccccccccCCCccC
Confidence            689999  9999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.7e-10  Score=51.43  Aligned_cols=31  Identities=23%  Similarity=0.506  Sum_probs=29.1

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|++.+|++.|....+|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6899988999999999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.3e-10  Score=54.09  Aligned_cols=32  Identities=34%  Similarity=0.662  Sum_probs=30.2

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      .|+|++||.|  ..|++.|.....|..|+++|.+
T Consensus         5 ~HTgeKPy~C--~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           5 GSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             ccCCccCeEe--CCCCCEecCHHHHHHHHhcCcC
Confidence            4999999999  9999999999999999999865

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.5e-10  Score=50.41  Aligned_cols=29  Identities=28%  Similarity=0.605  Sum_probs=27.5

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +||.|  ..|++.|..++.|..|+++|+|++
T Consensus         1 Kpy~C--~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFAC--PECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCC--TTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEEC--CcCCCeecchHHhhhhcCccCCcC
Confidence            68999  999999999999999999999975

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=6e-10  Score=50.46  Aligned_cols=29  Identities=34%  Similarity=0.716  Sum_probs=16.3

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      +||.|++++|++.|.....|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            35555555566666555555555555543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1e-09  Score=49.19  Aligned_cols=28  Identities=21%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +||.|++++|++.|....+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4666766667777777777777766664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.3e-09  Score=49.57  Aligned_cols=28  Identities=25%  Similarity=0.726  Sum_probs=15.7

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +||.|++++|++.|....+|..|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4555544555555555555555555554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.8e-09  Score=50.31  Aligned_cols=32  Identities=9%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             hcCCCcceeCCCCCCCccccCchHHHHHHH-HcCC
Q psy3946          45 NFNDTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQ   78 (127)
Q Consensus        45 ~h~~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~   78 (127)
                      +|+|++||.|  ..|++.|....+|..|++ .|+.
T Consensus         2 ~HTgekP~~C--~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYEC--YICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEEC--TTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeC--CCCcccccchHHHHHHcccccCC
Confidence            4999999999  999999999999999976 5543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.6e-09  Score=46.88  Aligned_cols=26  Identities=19%  Similarity=0.567  Sum_probs=24.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +||.|  ..||+.|...+.|..|+++|+
T Consensus         1 KPy~C--~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKC--LECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEEC--SSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccC--CCCcCeeccCcccccCccCCC
Confidence            69999  999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.7e-09  Score=47.76  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=25.4

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~g  106 (127)
                      +||.|.+  |+++|...+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899987  99999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.3e-08  Score=46.95  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             CCceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          79 LPRFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        79 ~~~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      ++||.|..  |++.|...+.|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999988  999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-08  Score=45.28  Aligned_cols=26  Identities=27%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~  105 (127)
                      +||.|..  |+|+|...+.|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999985

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-07  Score=42.59  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCCCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI  110 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~~  110 (127)
                      +...|..||+.|..-..|++|.-.|.|||||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            4456777777777777777777777777776

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.1e-07  Score=40.27  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             CCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      ++||.|..||+.|...+..++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            367777777777777777777777764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.8e-07  Score=40.21  Aligned_cols=29  Identities=28%  Similarity=0.638  Sum_probs=23.5

Q ss_pred             CCceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      ++||+|..|++.-...+.|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            46888888888888888888888888874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.5e-07  Score=38.76  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=16.2

Q ss_pred             eecCCCCccCCChHHHHHHHHhcCC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      .+|..|++.|+..+.|+.|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4566666666666666666666654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.10  E-value=1.3e-06  Score=37.59  Aligned_cols=27  Identities=26%  Similarity=0.609  Sum_probs=22.2

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      .||.||+.+|++.|...+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            378888888888888888888888766

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-06  Score=36.65  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      |+.|  ..|++.|.++..|..|++.|+|
T Consensus         1 phkc--~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKC--EVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCB--TTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCcc--chhhhHhcchhHHHHHhhccCC
Confidence            5789  9999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.5e-06  Score=36.21  Aligned_cols=26  Identities=23%  Similarity=0.666  Sum_probs=16.7

Q ss_pred             eecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      |.|..|+......+.|+.|.+.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666655

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.1e-06  Score=36.60  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=14.5

Q ss_pred             ecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          83 HCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        83 ~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .|..|||+|...+.|++|.-+|+||
T Consensus         4 vc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4555666666666666665555553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.6e-06  Score=38.83  Aligned_cols=32  Identities=16%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCCCce
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRF   82 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~   82 (127)
                      .+...|  ..||+.|....+|.+|...|++++||
T Consensus         3 rk~~~c--e~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEE--TTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhH--HHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            345779  99999999999999999999999997

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=6.5e-06  Score=34.53  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=20.8

Q ss_pred             ecCCCCccCCChHHHHHHHHhcCCCC
Q psy3946          83 HCSLCPYKSKRRDLLKSHMKHGHKLE  108 (127)
Q Consensus        83 ~C~~C~k~f~~~~~l~~H~~~h~g~k  108 (127)
                      +|+.|.+.|.+...|+.|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888888888888888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.3e-06  Score=36.26  Aligned_cols=27  Identities=22%  Similarity=0.605  Sum_probs=13.7

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g  106 (127)
                      +||.|+.|...|...+.+..|.+.|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            445555555555555555555555443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=6.1e-06  Score=35.52  Aligned_cols=27  Identities=26%  Similarity=0.480  Sum_probs=24.9

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      ++||.|  ..||+.|..+....+|.++|.
T Consensus         1 EkPf~C--~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFAC--DICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEEC--TTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCccc--chhhhhhhcchhhhhhhhhcc
Confidence            589999  999999999999999999884

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.9e-06  Score=35.64  Aligned_cols=25  Identities=28%  Similarity=0.763  Sum_probs=13.4

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHH
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQE   75 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~   75 (127)
                      ||.|.+.+|++.+...+.|..|++.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            4555555555555555555555553

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.3e-06  Score=36.55  Aligned_cols=29  Identities=14%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHH-HHcCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHR-QECGQ   78 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~-~~h~~   78 (127)
                      +||.|++.+|.+.|...+....|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            578887777888888888777886 56653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.4e-06  Score=38.64  Aligned_cols=28  Identities=18%  Similarity=0.497  Sum_probs=23.9

Q ss_pred             CCCCceecCCCCccCCChHHHHHHHHhc
Q psy3946          77 GQLPRFHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        77 ~~~~~~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      +|-+||.|..|+|.|-+++++.+|....
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            4678999999999999999999987543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1e-05  Score=35.25  Aligned_cols=27  Identities=26%  Similarity=0.540  Sum_probs=24.5

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGHK  106 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~g  106 (127)
                      +||.|..  |++++...++|.+|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899987  99999999999999998876

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.3e-05  Score=33.96  Aligned_cols=26  Identities=19%  Similarity=0.563  Sum_probs=22.5

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +||+|..|.+.-...++|+.|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68899999988888889999998875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.7e-05  Score=33.99  Aligned_cols=27  Identities=15%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      |.|  ..|+......+.|..|++.|++++
T Consensus         2 YvC--~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YIC--EECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBC--TTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccc--cccCcccCCHHHHHHHHHHhcCCC
Confidence            789  999999999999999999999864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.2e-05  Score=34.14  Aligned_cols=27  Identities=22%  Similarity=0.495  Sum_probs=24.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      -+.|  ..||+.|.-++.|++|+.+|+|+
T Consensus         2 ~hvc--~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVC--AECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEEC--TTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchH--HHHhHHHHHHHHHHHHhhcccCC
Confidence            3679  99999999999999999999874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.8e-05  Score=33.78  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      ++||+|  +.|...-..++.|.-|.+.|+|+
T Consensus         1 erpfkc--qlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKC--QICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEEC--SSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCccee--eecccccCCchheEEeeecccCc
Confidence            579999  99999999999999999999874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.7e-05  Score=34.64  Aligned_cols=29  Identities=21%  Similarity=0.502  Sum_probs=26.7

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      ++||.|  +.|+..|.++..+..|.+.|-|.
T Consensus         1 ekp~~c--pic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSC--PVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEE--TTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCccc--chHHHHhhccccceEeeecccCc
Confidence            589999  99999999999999999999775

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.64  E-value=2.3e-05  Score=33.53  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhc
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h  104 (127)
                      .||.|+.  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4899976  999999999999999987

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.63  E-value=2.4e-05  Score=33.66  Aligned_cols=30  Identities=20%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +||.|...+|.+.|....+|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            467776677777777777777777777653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.62  E-value=3.1e-05  Score=36.09  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=14.2

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .|.|..|++.|.+...|-.|++.|..+
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             ccCCCCCCCccCCcccccchHhhhcch
Confidence            355555555555555555555555443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.4e-05  Score=32.52  Aligned_cols=28  Identities=32%  Similarity=0.625  Sum_probs=23.2

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +||+|..|.....+.++|..|.+.-+|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999988888999999998876553

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=7.9e-05  Score=30.63  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=10.9

Q ss_pred             ecCCCCccCCChHHHHHHHHhc
Q psy3946          83 HCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        83 ~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      +|..|.++|...+.|.+|++.|
T Consensus         2 kcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGT
T ss_pred             cccchHHHHHHHHHHHHHHHhh
Confidence            4444555555555555555444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=0.00013  Score=33.97  Aligned_cols=29  Identities=17%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +.|.|  ..|++.|.+.+.|..|++.|..++
T Consensus         4 r~~~C--~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTC--SFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEEC--TTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCC--CCCCCccCCcccccchHhhhcchH
Confidence            56999  999999999999999999886543

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00017  Score=33.35  Aligned_cols=28  Identities=21%  Similarity=0.635  Sum_probs=17.6

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      ++||.|...+|+..|.+...|..|..-|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            5666666666666666666666665543

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00022  Score=30.62  Aligned_cols=26  Identities=31%  Similarity=0.766  Sum_probs=17.4

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +||+|+.|.+.....++|+.|.++-+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            46777777766666677777776544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=8.1e-05  Score=33.70  Aligned_cols=17  Identities=24%  Similarity=0.210  Sum_probs=8.6

Q ss_pred             CCChHHHHHHHHhcCCC
Q psy3946          91 SKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        91 f~~~~~l~~H~~~h~g~  107 (127)
                      |.....|..|+|.|+||
T Consensus        17 f~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          17 FKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CSSHHHHHHHTHHHHCC
T ss_pred             chhHHHHHHHHhhcCCC
Confidence            44455555555555543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.16  E-value=0.00015  Score=31.76  Aligned_cols=25  Identities=40%  Similarity=0.712  Sum_probs=18.5

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      ||.|..|++.|..++-|-+|.+..+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            5777888888888887777776544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.15  E-value=0.00014  Score=31.20  Aligned_cols=28  Identities=18%  Similarity=0.179  Sum_probs=25.1

Q ss_pred             CceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      +||.|..  |.|.|.....|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788865  999999999999999999886

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=9.7e-05  Score=32.39  Aligned_cols=27  Identities=11%  Similarity=0.237  Sum_probs=23.5

Q ss_pred             CceecCC--CCccCCChHHHHHHH-HhcCC
Q psy3946          80 PRFHCSL--CPYKSKRRDLLKSHM-KHGHK  106 (127)
Q Consensus        80 ~~~~C~~--C~k~f~~~~~l~~H~-~~h~g  106 (127)
                      +||.|..  |.|.|+..+....|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5899987  999999999999997 77754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00027  Score=29.45  Aligned_cols=26  Identities=19%  Similarity=0.528  Sum_probs=23.9

Q ss_pred             eCCCCCCCccccCchHHHHHHHHcCCCC
Q psy3946          53 QCPVPNCNRVYSRRRSLSRHRQECGQLP   80 (127)
Q Consensus        53 ~C~~~~C~~~f~~~~~l~~h~~~h~~~~   80 (127)
                      +|  +.|.+.|.++..|.-|-+.|+|++
T Consensus         2 qc--p~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 EC--PTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CC--TTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cC--cchHHHHHHhHhhhhccccccCCC
Confidence            68  999999999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.07  E-value=0.00019  Score=29.43  Aligned_cols=24  Identities=29%  Similarity=0.740  Sum_probs=21.9

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      |.|  ..|.+.|.-++.|.+|+++|.
T Consensus         1 ykc--glcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKC--GLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBC--SSSCCBCSSHHHHHHHGGGTC
T ss_pred             Ccc--cchHHHHHHHHHHHHHHHhhc
Confidence            679  999999999999999999874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00029  Score=33.02  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             CCCcceeCCCCCCCccccCchHHHHHHH
Q psy3946          47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        47 ~~~~p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      +|-+||.|  .+|++.|-....+.+|..
T Consensus         1 TGiKPYeC--~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYEC--NICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEEC--SSSCCEESCHHHHHHHHH
T ss_pred             CCCCceec--cchhhhhhhHHHHHHhhh
Confidence            57899999  999999999999999975

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.80  E-value=0.00043  Score=30.26  Aligned_cols=26  Identities=38%  Similarity=0.694  Sum_probs=22.8

Q ss_pred             ceeCCCCCCCccccCchHHHHHHH-HcCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQ-ECGQ   78 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~-~h~~   78 (127)
                      ||.|  ..|++.|.+...|.+|+. .|.|
T Consensus         1 Pf~C--~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPC--GLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEEC--TTTCCEESSHHHHHHHHTTTSCC
T ss_pred             Cccc--ccccchhhHHHHHHHHHHHHhcC
Confidence            7999  999999999999999976 6654

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00052  Score=29.26  Aligned_cols=23  Identities=35%  Similarity=0.819  Sum_probs=19.1

Q ss_pred             ceecCCCCccCCChHHHHHHHHh
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      ||.|..|..+|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            67888888888888888888874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00095  Score=28.39  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .-|.|..|...|..+-.|..|+-.|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3466666766676666677777666664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00084  Score=30.93  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             CCCceecC--CCCccCCChHHHHHHHHhcC
Q psy3946          78 QLPRFHCS--LCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        78 ~~~~~~C~--~C~k~f~~~~~l~~H~~~h~  105 (127)
                      .++||.|.  -|+.+|.....|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999995  59999999999999998874

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00095  Score=28.12  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      |-+|..|.++.+....|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5678889888888889999988874

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0015  Score=27.36  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=24.2

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      +||.|  ..|...-...+.|..|+++|.
T Consensus         2 kp~kc--k~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKC--KTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEEC--SSSCCEESSHHHHHHHHHHSC
T ss_pred             CCccc--ccccchhcchhhHhhhhhccc
Confidence            68999  999999999999999999885

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0016  Score=26.60  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=14.2

Q ss_pred             ceecCCCCccCCChHHHHHHHH
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      ||+|..|...|-+...|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0017  Score=28.94  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcCCC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .|.|..|+|.|..+..+.+|.....|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            478999999999999999998877764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0028  Score=27.03  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHc
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQEC   76 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h   76 (127)
                      +||+|  +.|......+++|..|+++-
T Consensus         1 kpy~c--qyc~yrsadssnlkthiktk   25 (30)
T d1klra_           1 KTYQC--QYCEFRSADSSNLKTHIKTK   25 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHH
T ss_pred             CCccc--cccccccccchhhhhhhhcc
Confidence            58999  99999999999999999853

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0027  Score=26.51  Aligned_cols=22  Identities=36%  Similarity=0.963  Sum_probs=16.8

Q ss_pred             ceeCCCCCCCccccCchHHHHHHH
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      ||.|  ..||+.+.++.+|..|..
T Consensus         1 pf~c--~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFEC--PKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBC--TTTCCBCSSHHHHHHHHH
T ss_pred             CCcc--ccchhhhhhHhHHHHHHH
Confidence            5778  888888888888777765

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0041  Score=26.18  Aligned_cols=25  Identities=20%  Similarity=0.724  Sum_probs=19.3

Q ss_pred             eCCCCCCCccccCchHHHHHHHHcC
Q psy3946          53 QCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        53 ~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      .||+.+|++-|...+.+..|+-+|.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            4677888888888888888876663

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0045  Score=26.24  Aligned_cols=23  Identities=22%  Similarity=0.690  Sum_probs=21.5

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHH
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQE   75 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~   75 (127)
                      ||.|  ..|+-.|....+|..|+++
T Consensus         1 py~C--~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHC--TYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEEC--SSSSCEESSHHHHHHHHHS
T ss_pred             Cccc--ceeeeeEeeccchhHhhhh
Confidence            7899  9999999999999999984

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.74  E-value=0.0038  Score=25.93  Aligned_cols=26  Identities=19%  Similarity=0.589  Sum_probs=15.9

Q ss_pred             eeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          52 FQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        52 ~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      |.|.+..|++.|.....|.-|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45555666666666666666665553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.011  Score=25.01  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=25.5

Q ss_pred             CcceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        49 ~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +.-|.|  ..|...|.+.-.|.-|+-.|+|+
T Consensus         2 eqvftc--s~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTC--SVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEEC--SSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEe--HHHHHHHHHHHhheeeeecccCC
Confidence            345889  99999999999999999999874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0043  Score=27.79  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             ceeCCCCCCCc---cccCchHHHHHHHHcCCC
Q psy3946          51 VFQCPVPNCNR---VYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        51 p~~C~~~~C~~---~f~~~~~l~~h~~~h~~~   79 (127)
                      .|.|.|..|.+   .|.....|..|+++|||+
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            47788888875   588889999999999985

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.011  Score=24.51  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             ceecCCCCccCCChHHHHHHHHh
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      ||+|..||+.+-...+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999998888888888653

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.011  Score=28.55  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             ceecCCCCccCCChHHHHHHHHhcC
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      -|.|..|+|.|.....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4778889999998888988888774

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.72  E-value=0.018  Score=23.41  Aligned_cols=22  Identities=27%  Similarity=0.662  Sum_probs=12.1

Q ss_pred             eecCCCCccCCChHHHHHHHHh
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKH  103 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~  103 (127)
                      |.|+.|-+-|...+++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4555555555555555555543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.014  Score=23.67  Aligned_cols=22  Identities=18%  Similarity=0.720  Sum_probs=20.3

Q ss_pred             ceeCCCCCCCccccCchHHHHHHH
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      ||.|  ..|...|-....|+.|+.
T Consensus         2 pykc--sscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKC--SSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEEC--SSSCCEESSHHHHHHHHH
T ss_pred             CCcc--cHHHHHHHHHHHHHHHHH
Confidence            7999  999999999999999974

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.13  E-value=0.019  Score=24.65  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=15.6

Q ss_pred             ceecCC--CCccCCChHHHHHHHHhcCCC
Q psy3946          81 RFHCSL--CPYKSKRRDLLKSHMKHGHKL  107 (127)
Q Consensus        81 ~~~C~~--C~k~f~~~~~l~~H~~~h~g~  107 (127)
                      .|.|..  |+-.|.....|..|+-.|+||
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            455543  555666666666666666554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.033  Score=23.12  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=16.6

Q ss_pred             eecCCCCccCCChHHHHHHHHhc
Q psy3946          82 FHCSLCPYKSKRRDLLKSHMKHG  104 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~~~h  104 (127)
                      |+|+.|.-.....+.|..|++..
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            67777777777777777777643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.027  Score=27.04  Aligned_cols=25  Identities=24%  Similarity=0.721  Sum_probs=22.3

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      -|.|  ..|+|.|.....|+.|..-|.
T Consensus         6 l~pC--G~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPC--GLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCC--TTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeec--cccccccCCHHHHhHhHHhcC
Confidence            4789  999999999999999998774

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.061  Score=22.65  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             cceeCCCCCCCccccCchHHHHHHH
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      +||.|  ..|.-.-...++|..|++
T Consensus         1 rPFkC--~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           1 RPFKC--NYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             CSEEC--SSSSCEESSHHHHHHHHH
T ss_pred             CCccc--ceecccccCcchHHHHHH
Confidence            58999  999988888899999987

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.09  E-value=0.069  Score=25.50  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             CCceecCCCCccCCChHHHHHHHHhcCCCCC
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKHGHKLEH  109 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~h~g~k~  109 (127)
                      +.|-.|+.|+-...+..+|.+|+...+=.||
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            5667788887777777788888776554443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.82  E-value=0.038  Score=23.67  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             cceeCCCCCCCccccCchHHHHHHHHcCCC
Q psy3946          50 GVFQCPVPNCNRVYSRRRSLSRHRQECGQL   79 (127)
Q Consensus        50 ~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~   79 (127)
                      +.|.|.+..|+-.|...--|..|...|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            468888899999999988899999888874

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.096  Score=21.72  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECG   77 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~   77 (127)
                      |-.|  ..|.....+...|.-|.++|.
T Consensus         2 pekc--~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKC--SECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEEC--SSSSCEESSHHHHHHHHGGGC
T ss_pred             CccC--cccccccCcHHHHHHhhcccc
Confidence            4579  999999999999999999884

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.13  E-value=0.062  Score=23.78  Aligned_cols=27  Identities=15%  Similarity=0.328  Sum_probs=18.8

Q ss_pred             CCceecCCCCccCCChHHHHHHHHhcC
Q psy3946          79 LPRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        79 ~~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      +.-|+|..|.+.+...+++-+|.-+.+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            345777777777777777777766544

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.14  Score=21.43  Aligned_cols=20  Identities=25%  Similarity=0.511  Sum_probs=12.2

Q ss_pred             eecCCCCccCCChHHHHHHH
Q psy3946          82 FHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~  101 (127)
                      |.|..|+|++.+...++.|.
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            45666666666666666554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.68  E-value=0.066  Score=23.38  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=18.2

Q ss_pred             ceecCCCCccCCChHHHHHHHH
Q psy3946          81 RFHCSLCPYKSKRRDLLKSHMK  102 (127)
Q Consensus        81 ~~~C~~C~k~f~~~~~l~~H~~  102 (127)
                      .|.|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4788888888988888888865

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.083  Score=22.13  Aligned_cols=20  Identities=35%  Similarity=0.911  Sum_probs=14.1

Q ss_pred             CCCCCCccccCchHHHHHHH
Q psy3946          55 PVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        55 ~~~~C~~~f~~~~~l~~h~~   74 (127)
                      -+.+|++.|...+.|..|.+
T Consensus         4 df~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           4 DFPGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             SSTTTCCEESSHHHHHHHHH
T ss_pred             CCCCchhhhccHHHHHhHHH
Confidence            34777777777777776655

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.1  Score=22.95  Aligned_cols=26  Identities=31%  Similarity=0.993  Sum_probs=22.6

Q ss_pred             ceeCCCCCCCccccCchHHHHHHHHcCC
Q psy3946          51 VFQCPVPNCNRVYSRRRSLSRHRQECGQ   78 (127)
Q Consensus        51 p~~C~~~~C~~~f~~~~~l~~h~~~h~~   78 (127)
                      .|.|  ..|++.|.+...+.+|-...+|
T Consensus         4 afvc--skcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVC--SKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEEC--SSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeee--cccccchhcchHHHHHhhhcCC
Confidence            4889  9999999999999999876655

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.09  E-value=0.16  Score=22.08  Aligned_cols=22  Identities=18%  Similarity=0.546  Sum_probs=18.7

Q ss_pred             eCCCCCCCccccCchHHHHHHH
Q psy3946          53 QCPVPNCNRVYSRRRSLSRHRQ   74 (127)
Q Consensus        53 ~C~~~~C~~~f~~~~~l~~h~~   74 (127)
                      .|.|..|+..|..+..|..|+.
T Consensus         3 nChW~~C~~eFdtQd~LV~Hin   24 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHIN   24 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHH
T ss_pred             cccccccccccCCHHHHHHHcc
Confidence            3678999999999998988876

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.44  E-value=0.088  Score=27.38  Aligned_cols=20  Identities=25%  Similarity=0.409  Sum_probs=10.2

Q ss_pred             eecCCCCccCCChHHHHHHH
Q psy3946          82 FHCSLCPYKSKRRDLLKSHM  101 (127)
Q Consensus        82 ~~C~~C~k~f~~~~~l~~H~  101 (127)
                      |-|..|.|.|.+...|..|.
T Consensus        16 fYCv~C~K~F~se~~l~~H~   35 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHF   35 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHT
T ss_pred             EecccccCccCCHHHHHHHH
Confidence            44555555555555555443

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.84  E-value=0.69  Score=22.40  Aligned_cols=31  Identities=16%  Similarity=0.301  Sum_probs=18.8

Q ss_pred             CCcceeCCCCCCCccccCchHHHHHHH-HcCC
Q psy3946          48 DTGVFQCPVPNCNRVYSRRRSLSRHRQ-ECGQ   78 (127)
Q Consensus        48 ~~~p~~C~~~~C~~~f~~~~~l~~h~~-~h~~   78 (127)
                      .-+||.|-+++|...|.-..+|.-|-+ +|..
T Consensus        17 pyrpyrcvhqgc~aaftiq~nlilhy~avh~s   48 (61)
T d1x3ca1          17 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKS   48 (61)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             CCCceeeeccchhhhhhhhhhHHHHHHHHhhh
Confidence            345666666666666666666666644 4543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.84  Score=23.07  Aligned_cols=38  Identities=18%  Similarity=0.567  Sum_probs=25.4

Q ss_pred             CCCcceeCCCCCCCccccCchHHHHHHHHcCCCCceecCCCCc
Q psy3946          47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPY   89 (127)
Q Consensus        47 ~~~~p~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~k   89 (127)
                      +...-|.|  +.|++.|.....   -+........|.|..|+-
T Consensus        10 ~~~~~y~C--p~C~~~ys~Lda---~~L~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          10 TNRASFKC--PVCSSTFTDLEA---NQLFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             CSSSEEEC--SSSCCEEEHHHH---HHHEETTTTEEBCSSSCC
T ss_pred             ccCCceEC--CCCCCCcchhhH---HHhcCcCCCeEEecCCCC
Confidence            44556999  999999885443   333333445689998874

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=0.42  Score=24.35  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             CceecCCCCccCCChHHHHHHHHhcC
Q psy3946          80 PRFHCSLCPYKSKRRDLLKSHMKHGH  105 (127)
Q Consensus        80 ~~~~C~~C~k~f~~~~~l~~H~~~h~  105 (127)
                      .-|+|..|.-.|.....|..|+-.|+
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45888888888888888888877764