Psyllid ID: psy3954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MVKHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEccccccccccccccccccEEEEEEEEEEccccccccccccEEEEccccccccccEEccEEEEEEccccEEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEccccccccccccEEEEEEEEEccEEEEEEEEccccccccccccccEEEEEEEccccccEEEccccccccccccccEEEEcccccccEEEEEEEEcccccccEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHcccEEEEEccccccccccEEEEEHHHHHccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEEHHHHcccccccHHHHccccccccccccEEEEEEEEcccEEEEEEEEEccccccccccccEEEEEEEccccccEEEEEEEEEccccccccEEEEEEccccccEEEEEEEEcccccccccEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MVKHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYylqprkrlTANQIIQDLGTLRIRIQYTADhilqphyyedlctqilnspsvnpvtspffgeefqfdiprRFRHLAVYAydrdrtsktdrvlgkvtiqrsdlhrisnkehwfpltpvtqdsevqgkiqigvlstptslmvnvneasgltqvngqcdptaMVTVHYThnksdvqkskvkkkshspvfnesfmfdrslgdpIELVVSLHHDISGLNVFLgevhiplnnketsssww
Flexible Loop (DISEMBL)
mvkhttyklmvkhtTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVyaydrdrtsktdrvlgkvtiqrsdlhrisnkehwfpltpvtqdsevQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHnksdvqkskvkkkshspVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHiplnnketsssww
Low Complexity Region (SEG)
MVKHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNksdvqkskvkkkshspvFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW
Disordered region (IsUnstruct)
****TTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYT*******************FNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPL**********
Disordered Region (DISOPRED)
****TTY*LMVKHTTYKLMVNHATYKLMVKHTAYKYY********************IRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP********GKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHY************KKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHI************
Disordered Region (DISEMBL)
MVKHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHN**************SPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW
Disordered Region (DISPRO)
**KHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKHTTYKLMVKHTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q14644	834	Ras GTPase-activating pro	yes	N/A	0.697	0.224	0.361	4e-28
Q9QYJ2	834	Ras GTPase-activating pro	yes	N/A	0.697	0.224	0.365	2e-24
Q60790	834	Ras GTPase-activating pro	yes	N/A	0.697	0.224	0.365	3e-24
Q28013	834	Ras GTPase-activating pro	yes	N/A	0.694	0.223	0.346	5e-23
Q15283	849	Ras GTPase-activating pro	no	N/A	0.798	0.252	0.345	8e-23
Q63713	847	Ras GTPase-activating pro	no	N/A	0.794	0.251	0.335	3e-22
P58069	848	Ras GTPase-activating pro	no	N/A	0.761	0.240	0.344	8e-22
P48423	1163	GTPase-activating protein	yes	N/A	0.388	0.089	0.452	1e-21
O43374	803	Ras GTPase-activating pro	no	N/A	0.638	0.212	0.340	3e-13
C9J798	803	Putative Ras GTPase-activ	no	N/A	0.638	0.212	0.340	3e-13

>sp|Q14644|RASA3_HUMAN Ras GTPase-activating protein 3 OS=Homo sapiens GN=RASA3 PE=1 SV=3

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 118/216 (54%), Gaps = 29/216 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct: 46  EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQK 104

Query: 139 ISNKEHWFPLTPVTQDSEVQGKI----QIGVLSTPTS-----LMVNVNEASGLTQVNGQC 189
             N++ WF L  V  DSEVQGK+    ++  + T T      L   + E  GL  VNGQC
Sbjct: 105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLATRIVECQGLPIVNGQC 164

Query: 190 DPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG----------------DP 233
           DP A VT+     +S+ +K+KVK+K+++P F+E F F+ +                  D 
Sbjct: 165 DPYATVTLAGPF-RSEAKKTKVKRKTNNPQFDEVFYFEVTRPCSYSKKSHFDFEEEDVDK 223

Query: 234 IELVVSLHH--DISGLNVFLGEVHIPLNNKETSSSW 267
           +E+ V L +  ++   + FLGE+ IPL     SSS+
Sbjct: 224 LEIRVDLWNASNLKFGDEFLGELRIPLKVLRQSSSY 259

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4) with high affinity. Might be a specific IP4 receptor.
Homo sapiens (taxid: 9606)

>sp|Q9QYJ2|RASA3_RAT Ras GTPase-activating protein 3 OS=Rattus norvegicus GN=Rasa3 PE=2 SV=2

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 29/216 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL R
Sbjct: 46  EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQR 104

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGV----LSTPTS-----LMVNVNEASGLTQVNGQC 189
             N++ WF L  V  DSEVQGK+ + +    + T T      L   + E  GL  VNGQC
Sbjct: 105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARIFECQGLPIVNGQC 164

Query: 190 DPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG----------------DP 233
           DP A VT+     +S+ +K+KVKKK+++P F+E F F+ +                  D 
Sbjct: 165 DPYATVTLAGPF-RSEAKKTKVKKKTNNPQFDEVFYFEVTRPCSYSKKSHFDFEEEDVDK 223

Query: 234 IELVVSLHH--DISGLNVFLGEVHIPLNNKETSSSW 267
           +E+ V L +  ++   + FLGE+ IPL+    +SS+
Sbjct: 224 LEIRVDLWNASNLKFGDEFLGELRIPLHVLRYASSY 259

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4).

Rattus norvegicus (taxid: 10116)

>sp|Q60790|RASA3_MOUSE Ras GTPase-activating protein 3 OS=Mus musculus GN=Rasa3 PE=1 SV=2

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 29/216 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL R
Sbjct: 46  EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQR 104

Query: 139 ISNKEHWFPLTPVTQDSEVQGKI----QIGVLSTPTS-----LMVNVNEASGLTQVNGQC 189
             N++ WF L  V  DSEVQGK+    ++  + T T      L   + E  GL  VNGQC
Sbjct: 105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARIFECQGLPIVNGQC 164

Query: 190 DPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG----------------DP 233
           DP A VT+     +S+ +K+KVKKK+++P F+E F F+ +                  D 
Sbjct: 165 DPYATVTLAGPF-RSEAKKTKVKKKTNNPQFDEVFYFEVTRPCSYSKKSHFDFEEEDVDK 223

Query: 234 IELVVSLHH--DISGLNVFLGEVHIPLNNKETSSSW 267
           +E+ V L +  ++   + FLGE+ +PL     SSS+
Sbjct: 224 LEIRVDLWNASNLKFGDEFLGELRLPLKILRHSSSY 259

Inhibitory regulator of the Ras-cyclic AMP pathway. May bind inositol tetrakisphosphate (IP4).

Mus musculus (taxid: 10090)

>sp|Q28013|RASA3_BOVIN Ras GTPase-activating protein 3 OS=Bos taurus GN=RASA3 PE=2 SV=1

 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 36/222 (16%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV I++ DL +
Sbjct: 46  EVFRTKVVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIKKEDLQK 104

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQI-----------GVLSTPTSLMVNVNEASGLTQVNG 187
             N++ WF L  V  DSEVQGK+ +           GV+     L   + E  GL  VNG
Sbjct: 105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDSGVVC--HKLATRILECQGLPIVNG 162

Query: 188 QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG---------------- 231
           QCDP A VT+     +S+ +K+KVKKK+++P F+E F F+ +                  
Sbjct: 163 QCDPYATVTLA-GPCRSEAKKTKVKKKTNNPQFDEVFYFEVTRPCSYSRKSHFDFEDEDV 221

Query: 232 DPIELVVSLHH--DISGLNVFLGEVHIPLNNKETSS---SWW 268
           D +E+ V L +  ++   + FLGE+ +PL     SS   +W+
Sbjct: 222 DKLEIRVDLWNASNLKFGDEFLGELRVPLKVLRQSSPHEAWY 263

Inhibitory regulator of the Ras-cyclic AMP pathway. May bind inositol tetrakisphosphate (IP4).

Bos taurus (taxid: 9913)

>sp|Q15283|RASA2_HUMAN Ras GTPase-activating protein 2 OS=Homo sapiens GN=RASA2 PE=2 SV=2

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 137/255 (53%), Gaps = 41/255 (16%)

Query: 53  LGTLRIRIQYTADHI--LQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIP 103
           L +LR +I    + +  L PH   D  CT      ++  +  V    SPFF EEF F+IP
Sbjct: 37  LQSLRGKICEAKNLLPYLGPHKMRDCFCTINLDQEEVYRTQVVEKSLSPFFSEEFYFEIP 96

Query: 104 RRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQI 163
           R F++L+ Y YD++   +  R+ GKV I++ DL   S KE WF L PV  +SEVQGK+ +
Sbjct: 97  RTFQYLSFYVYDKNVLQRDLRI-GKVAIKKEDLCNHSGKETWFSLQPVDSNSEVQGKVHL 155

Query: 164 GVL---------STPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDVQKSKVKK 213
            +          +    L+V++    GL  +NGQ CDP A V++    +++D +K+KVKK
Sbjct: 156 ELKLNELITENGTVCQQLVVHIKACHGLPLINGQSCDPYATVSL-VGPSRNDQKKTKVKK 214

Query: 214 KSHSPVFNESFMFD--RSLG--------------DPIELVVSLHHDISGL-NVFLGEVHI 256
           K+ +P FNE F F+  RS                + +E+ + L ++ + + +VFLGE+ +
Sbjct: 215 KTSNPQFNEIFYFEVTRSSSYTRKSQFQVEEEDIEKLEIRIDLWNNGNLVQDVFLGEIKV 274

Query: 257 PLNNKETSSS---WW 268
           P+N   T SS   W+
Sbjct: 275 PVNVLRTDSSHQAWY 289

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4).

Homo sapiens (taxid: 9606)

>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus norvegicus GN=Rasa2 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 139/256 (54%), Gaps = 43/256 (16%)

Query: 53  LGTLRIRIQYTADHIL---QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDI 102
           L +LR RI Y A ++L    P+   D  CT      ++  +  V    SP+F EEF F+I
Sbjct: 36  LQSLRGRI-YEAKNLLPYLGPNKMRDCFCTINLDQEEVYRTQVVEKSLSPYFSEEFYFEI 94

Query: 103 PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162
           PR F++L+ Y YD++   +  R+ GKV I++ DL   S KE WF L P+  +SEVQGK+ 
Sbjct: 95  PRTFQYLSFYVYDKNVLQRDLRI-GKVAIKKEDLCSHSGKETWFSLQPIDSNSEVQGKVH 153

Query: 163 IGVL---------STPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDVQKSKVK 212
           + +          +    L+V++    GL  +NGQ CDP A V++    +++D +K+KVK
Sbjct: 154 LELKLNELITENGTVCQQLVVHIKACHGLPLINGQSCDPYATVSL-VGPSRNDQKKTKVK 212

Query: 213 KKSHSPVFNESFMFD--RSLG--------------DPIELVVSLHHDISGL-NVFLGEVH 255
           KK+ +P FNE F F+  RS                + +E+ + L ++ + + +VFLGE+ 
Sbjct: 213 KKTSNPQFNEVFYFEVTRSSSYTRKSQFQVEEEDIEKLEIRIDLWNNENLVQDVFLGEIK 272

Query: 256 IPLN---NKETSSSWW 268
           +P+N   N  +  +W+
Sbjct: 273 VPVNVLRNDSSHQAWY 288

Inhibitory regulator of the Ras-cyclic AMP pathway. May bind inositol tetrakisphosphate (IP4) and phospholipids.

Rattus norvegicus (taxid: 10116)

>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus musculus GN=Rasa2 PE=1 SV=1

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 40/244 (16%)

Query: 53  LGTLRIRIQYTADHIL---QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDI 102
           L +LR RI Y A ++L    P+   D  CT      ++  +  V    SP+F EEF F+I
Sbjct: 37  LQSLRGRI-YEAKNLLPYLGPNKMRDCFCTINLDQEEVYRTQVVEKSLSPYFSEEFYFEI 95

Query: 103 PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162
           PR F++L+ Y YD++   +  R+ GKV I++ DL   S KE WF L P+  +SEVQGK+ 
Sbjct: 96  PRTFQYLSFYVYDKNVLQRDLRI-GKVAIKKEDLCSHSGKETWFSLQPIDSNSEVQGKVH 154

Query: 163 IGVL---------STPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDVQKSKVK 212
           + +          +    L+V++    GL  +NGQ CDP A V++    +++D +K+KVK
Sbjct: 155 LELRLNELITENGTVCQQLVVHIKACHGLPLINGQSCDPYATVSL-VGPSRNDQKKTKVK 213

Query: 213 KKSHSPVFNESFMFD--RSLG--------------DPIELVVSLHHDISGL-NVFLGEVH 255
           KK+ +P FNE F F+  RS                + +E+ + L ++ + + +VFLGE+ 
Sbjct: 214 KKTSNPQFNEVFYFEVTRSSSYSRKSQFQVEEEDIEKLEIRIDLWNNENLVQDVFLGEIK 273

Query: 256 IPLN 259
           +P+N
Sbjct: 274 VPVN 277

Inhibitory regulator of the Ras-cyclic AMP pathway. Binds inositol tetrakisphosphate (IP4) and phospholipids.

Mus musculus (taxid: 10090)

>sp|P48423|GAP1_DROME GTPase-activating protein OS=Drosophila melanogaster GN=Gap1 PE=2 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  +P++    +PFFGEE QF IPRRFR+L +Y +DRD   K D+ +GK+ I+R +LH 
Sbjct: 83  EICRTPTIERTLTPFFGEEHQFKIPRRFRYLTIYLWDRDM--KQDKPIGKIAIKREELHM 140

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQ 184
            ++K+HWF L PV QDSEVQG + + V  T      +++E   L Q
Sbjct: 141 YNHKDHWFSLRPVDQDSEVQGMVNVEVAFTEAQQTQSLSEGIDLGQ 186

Inhibitory regulator of the Ras-cyclic AMP pathway. May function as a negative regulator of RAS1 in the Sev signaling pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 80  ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR- 138
           I+ + +V     PF+GEE+Q  +P  F  +A Y  D D  S+ D V+GKV + R  +   
Sbjct: 39  IIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDD-VIGKVCLTRDTIASH 97

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTS----LMVNVNEASGLT--QVNGQCDPT 192
                 W  LT V  D EVQG+I + +   P +    L  +V EA  L     NG  DP 
Sbjct: 98  PKGFSGWAHLTEVDPDEEVQGEIHLRLEVWPGARACRLRCSVLEARDLAPKDRNGTSDP- 156

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVV-SLHHDISGLNVFL 251
             V V Y   K   +++ + KKS  P +NE+F F+   G    L V +   D+   N FL
Sbjct: 157 -FVRVRY---KGRTRETSIVKKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFL 212

Query: 252 GEVHI 256
           G+V I
Sbjct: 213 GKVVI 217

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 80  ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR- 138
           I+ + +V     PF+GEE+Q  +P  F  +A Y  D D  S+ D V+GKV + R  +   
Sbjct: 39  IIRTATVWKTLCPFWGEEYQVHLPPTFHAVAFYVMDEDALSRDD-VIGKVCLTRDTIASH 97

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTS----LMVNVNEASGLT--QVNGQCDPT 192
                 W  LT V  D EVQG+I + +   P +    L  +V EA  L     NG  DP 
Sbjct: 98  PKGFSGWAHLTEVDPDEEVQGEIHLRLEVWPGARACRLRCSVLEARDLAPKDRNGTSDP- 156

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVV-SLHHDISGLNVFL 251
             V V Y   K   +++ + KKS  P +NE+F F+   G    L V +   D+   N FL
Sbjct: 157 -FVRVRY---KGRTRETSIVKKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFL 212

Query: 252 GEVHI 256
           G+V I
Sbjct: 213 GKVVI 217

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
383849362	987	PREDICTED: GTPase-activating protein-lik	0.708	0.192	0.429	5e-42
328793288	1014	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.708	0.187	0.429	1e-41
328718620	821	PREDICTED: GTPase-activating protein-lik	0.682	0.222	0.442	2e-41
380026757	906	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.708	0.209	0.424	3e-41
322791351	988	hypothetical protein SINV_11004 [Solenop	0.708	0.192	0.429	5e-41
332019906	1000	Ras GTPase-activating protein 3 [Acromyr	0.708	0.19	0.424	8e-41
307194252	965	Ras GTPase-activating protein 3 [Harpegn	0.664	0.184	0.449	2e-40
307166396	1010	Ras GTPase-activating protein 3 [Campono	0.708	0.188	0.425	5e-40
340720458	1014	PREDICTED: LOW QUALITY PROTEIN: GTPase-a	0.708	0.187	0.410	2e-39
242013028	950	Ras GTPase-activating protein, putative	0.660	0.186	0.441	4e-39

>gi|383849362|ref|XP_003700314.1| PREDICTED: GTPase-activating protein-like [Megachile rotundata]

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    SPFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL +
Sbjct: 47  EIFRTATMERTLSPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLAK 106

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTS------LMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK  + +   P S      L V V E + LT  NG CDP 
Sbjct: 107 YHNKEHWFPLGPVDADSEVQGKAHLELALQPQSGHVQSKLTVRVIECNDLTLKNGGCDPF 166

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A VTV Y++ K  ++++K+KKK+ SP FNE+F F+  +               G+  E+V
Sbjct: 167 ATVTVIYSNGKQILKRTKIKKKTVSPYFNETFTFEPEITESKEKDISQCPLEHGEVGEVV 226

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H   G+     FLGEV I L   +      +++W+
Sbjct: 227 VGLWHASPGMGEQPAFLGEVRITLRGLQKQPTNATTAWY 265

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793288|ref|XP_395469.4| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein [Apis mellifera]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL  
Sbjct: 47  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLTT 106

Query: 139 ISNKEHWFPLTPVTQDSEVQGK------IQIGVLSTPTSLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK      +Q  +    + L V V E S LT  NG CDP 
Sbjct: 107 YHNKEHWFPLRPVDADSEVQGKAHLELSLQSQIGHAQSKLTVRVIECSELTIKNGGCDPF 166

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A+VTV Y++ K  ++++K+KKK+ SP FNE+F+F+  +               G+  E+V
Sbjct: 167 AIVTVIYSNGKQVLKRTKIKKKTVSPYFNETFIFEPEITESKEKDISHYSLEHGEVNEVV 226

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H  SG+     FLGEV I L   +     ++++W+
Sbjct: 227 VGLWHASSGMGEQPAFLGEVRITLRGLQKQSTNSTTAWY 265

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718620|ref|XP_001943934.2| PREDICTED: GTPase-activating protein-like [Acyrthosiphon pisum]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 130/208 (62%), Gaps = 25/208 (12%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++     PF+GEEF+F+IPRRFR+L V  Y+RDR       LG+VT++R  L  
Sbjct: 46  EIFRTATIEKAIDPFWGEEFEFEIPRRFRYLGVCVYERDRP------LGRVTVRRDQLTS 99

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVL--STPTSLMVNVNEASGLTQVNGQCDPTAMVT 196
            ++K+HWFPL P+  +SEVQGKI I +        L V +NEA  L   NG CDP A VT
Sbjct: 100 FNDKDHWFPLRPLNVESEVQGKIHIEIEFGENRGRLGVRLNEACELAITNGNCDPFADVT 159

Query: 197 VHYTHNKSDVQKSKVKKKSHSPVFNESFMF---------------DRSLGDPIELVVSLH 241
           V YT++K++ Q++KVKKK++SPVF+E+F F                 +  D  EL+V+L+
Sbjct: 160 VRYTNDKTETQRTKVKKKTNSPVFDEAFAFTLPGLSGIHKQHIAGQTTTADWAELIVTLY 219

Query: 242 HDISGLN-VFLGEVHIPLNNKETSSSWW 268
           H+IS  N VFLG+V IPL  + T S+W+
Sbjct: 220 HEISSSNTVFLGQVTIPLQGR-TVSAWY 246

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026757|ref|XP_003697110.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein-like [Apis florea]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL  
Sbjct: 47  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLTT 106

Query: 139 ISNKEHWFPLTPVTQDSEVQGK------IQIGVLSTPTSLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK      +Q  +    + L V V E S LT  NG CDP 
Sbjct: 107 YHNKEHWFPLRPVDADSEVQGKAHLELSLQSQIGHAQSKLTVRVIECSELTIKNGGCDPF 166

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A+VTV Y++ K  ++++K+ KK+ SP FNE+F+F+  +               G+  E+V
Sbjct: 167 AIVTVIYSNGKQVLKRTKIXKKTISPYFNETFIFEPEITESKEKDISHYSLEHGEVNEVV 226

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H  SG+     FLGEV I L   +     ++++W+
Sbjct: 227 VGLWHASSGMGEQPAFLGEVRITLRGLQKQSTNSTTAWY 265

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791351|gb|EFZ15838.1| hypothetical protein SINV_11004 [Solenopsis invicta]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL  
Sbjct: 28  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLAT 87

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPT------SLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK  + +   P        L V + E S LT  NG CDP 
Sbjct: 88  YHNKEHWFPLKPVDADSEVQGKTHLELALQPQVEHAQPKLTVRIIECSELTIKNGSCDPF 147

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A VTV Y++ K   +++KVKKK+ SP FNE+F+F+  L                +  E+V
Sbjct: 148 ATVTVIYSNGKQISKRTKVKKKTASPYFNETFVFEPELTETRDKDVSHYSIEGAEVGEVV 207

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H   G+    VFLGEV + L   +     T+++W+
Sbjct: 208 VGLWHASPGMGEQPVFLGEVRVTLKGLQKQPTSTTTAWY 246

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019906|gb|EGI60367.1| Ras GTPase-activating protein 3 [Acromyrmex echinatior]

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL  
Sbjct: 29  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLAT 88

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPT------SLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK  + +   P        L V + E S LT  NG CDP 
Sbjct: 89  YHNKEHWFPLKPVDADSEVQGKAHLELALQPQVEHAQPKLTVRIIECSELTIKNGSCDPF 148

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A VTV Y++ K   +++KVKKK+ SP FNE+F+F+  L                +  E+V
Sbjct: 149 ATVTVIYSNGKQISKRTKVKKKTASPRFNETFVFEPELTETRDKDVSHYSIEGAEVGEVV 208

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H   G+    VFLGE+ + L   +     T+++W+
Sbjct: 209 VGLWHASPGMGEQPVFLGEIRVTLKGLQKQPTSTTTAWY 247

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194252|gb|EFN76648.1| Ras GTPase-activating protein 3 [Harpegnathos saltator]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 124/207 (59%), Gaps = 29/207 (14%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
           +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL    NKEHWFPL P
Sbjct: 6   NPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLATYHNKEHWFPLKP 65

Query: 151 VTQDSEVQGKIQIGVLSTPT------SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKS 204
           V  DSEVQGK  + +   P        L V + E S LT  NG CDP A VTV Y++ K 
Sbjct: 66  VDADSEVQGKAHLELALQPQVEHAQPKLTVRIIECSELTIKNGSCDPFATVTVIYSNGKQ 125

Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELVVSLHHDISGL-- 247
             +++KVKKK+ SP FNE+F+F+  L                +  E+VV L H   G+  
Sbjct: 126 ISKRTKVKKKTSSPQFNETFVFEPELTETKDKDVSHYSIEGAEVGEVVVGLWHASPGMGE 185

Query: 248 -NVFLGEVHIPLNNKE-----TSSSWW 268
            +VFLGEV + L   +     T+++W+
Sbjct: 186 QSVFLGEVRVTLRGLQRQPTSTTTAWY 212

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166396|gb|EFN60533.1| Ras GTPase-activating protein 3 [Camponotus floridanus]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 26/216 (12%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R +L  
Sbjct: 47  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREELAS 106

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPT------SLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL PV  DSEVQGK  + +   P        L V V E S LT  N  CDP 
Sbjct: 107 YHNKEHWFPLKPVDADSEVQGKAHLELALQPQVEHAQPKLTVRVIECSELTIKNSSCDPF 166

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A VTV Y++ K   +++KV+KK+ SP FNE+F+F+  L                +  E+V
Sbjct: 167 ATVTVIYSNGKQISKRTKVRKKTSSPYFNETFIFEPELIETKDKDISHYSMEGAEVGEVV 226

Query: 238 VSLHHDISGL---NVFLGEVHIPLNNKETS--SSWW 268
           V L H   G+   +VFLGE+ + L    TS  ++W+
Sbjct: 227 VGLWHASPGMGEQSVFLGEIRVTLKGLPTSTTTAWY 262

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720458|ref|XP_003398654.1| PREDICTED: LOW QUALITY PROTEIN: GTPase-activating protein-like [Bombus terrestris]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 29/219 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + ++    +PFFGEEFQF++PR+FR+L +Y YDRDR  K D++LGKV I+R DL  
Sbjct: 47  EIFRTTTMERTLNPFFGEEFQFEVPRKFRYLGIYVYDRDRHLKQDKILGKVAIKREDLAT 106

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPT------SLMVNVNEASGLTQVNGQCDPT 192
             NKEHWFPL  V  DSEVQGK  + +   P        L V + E S LT  N  CDP 
Sbjct: 107 YHNKEHWFPLRLVDADSEVQGKAHLELALQPQIGYAQPKLTVRIIECSELTVKNSGCDPF 166

Query: 193 AMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL---------------GDPIELV 237
           A VTV+Y++ K  ++++K+ KK+ SP FNE+F+F+  +               G+  E+V
Sbjct: 167 ATVTVNYSNGKQVLKRTKIXKKTISPYFNETFVFEPEITESKEKDISHYPLERGEVGEVV 226

Query: 238 VSLHHDISGLN---VFLGEVHIPLNNKE-----TSSSWW 268
           V L H  SG+     FLGEV + L   +     T+++W+
Sbjct: 227 VGLWHASSGMGEQPAFLGEVRVTLKGLQKQPTNTTTAWY 265

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013028|ref|XP_002427223.1| Ras GTPase-activating protein, putative [Pediculus humanus corporis] gi|212511527|gb|EEB14485.1| Ras GTPase-activating protein, putative [Pediculus humanus corporis]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 127/204 (62%), Gaps = 27/204 (13%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           +I  + +V    +PFFGEEFQF+IPRRFR+L+VY YDRD   K ++V+GKV I+R DL  
Sbjct: 48  EIFRTTTVERTLNPFFGEEFQFEIPRRFRYLSVYVYDRD---KNEKVIGKVAIKREDLTS 104

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-------LSTPTSLMVNVNEASGLTQVNGQCDP 191
            +NK+HWF L  V  DSEVQGK Q+GV        +    ++V + E S LT   G CDP
Sbjct: 105 YNNKDHWFQLKNVDCDSEVQGKCQVGVKLESSLDANGDDKVVVRLLECSDLTLKGGSCDP 164

Query: 192 TAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG---------------DPIEL 236
            A VT+ Y++ K D++++KVKKK++SP F+E+F F+                   +  E+
Sbjct: 165 FATVTMVYSNGKQDLKRTKVKKKTNSPKFDETFTFEVCQNHDRDTYQVHNTERDVEFSEV 224

Query: 237 VVSLHHDISGL--NVFLGEVHIPL 258
           +V+L HD  G+  N+FLGEV IP+
Sbjct: 225 LVTLWHDSPGMSDNLFLGEVRIPV 248

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
FB|FBgn0004390	1163	RasGAP1 "Ras GTPase activating	0.388	0.089	0.452	5.3e-26
UNIPROTKB|E2QUY1	834	RASA3 "Uncharacterized protein	0.440	0.141	0.429	5.7e-23
UNIPROTKB|F8W6X8	802	RASA3 "cDNA FLJ58396" [Homo sa	0.440	0.147	0.429	1e-22
MGI|MGI:1197013	834	Rasa3 "RAS p21 protein activat	0.440	0.141	0.437	1.1e-22
RGD|69365	834	Rasa3 "RAS p21 protein activat	0.440	0.141	0.437	1.1e-22
UNIPROTKB|F1LSI5	834	Rasa3 "Ras GTPase-activating p	0.440	0.141	0.437	1.1e-22
UNIPROTKB|Q14644	834	RASA3 "Ras GTPase-activating p	0.440	0.141	0.429	1.2e-22
UNIPROTKB|Q5ZHM9	820	RASA2 "Uncharacterized protein	0.649	0.212	0.353	4.6e-22
UNIPROTKB|F1P4A4	835	RASA3 "Uncharacterized protein	0.440	0.141	0.437	4.9e-22
UNIPROTKB|F1RN30	834	RASA3 "Uncharacterized protein	0.440	0.141	0.421	1e-21

FB|FBgn0004390 RasGAP1 "Ras GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
 Identities = 48/106 (45%), Positives = 69/106 (65%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             +I  +P++    +PFFGEE QF IPRRFR+L +Y +DRD   K D+ +GK+ I+R +LH 
Sbjct:    83 EICRTPTIERTLTPFFGEEHQFKIPRRFRYLTIYLWDRDM--KQDKPIGKIAIKREELHM 140

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQ 184
              ++K+HWF L PV QDSEVQG + + V  T      +++E   L Q
Sbjct:   141 YNHKDHWFSLRPVDQDSEVQGMVNVEVAFTEAQQTQSLSEGIDLGQ 186

GO:0005099 "Ras GTPase activator activity" evidence=ISS;NAS;IMP

GO:0007265 "Ras protein signal transduction" evidence=NAS;IMP

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA;NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008293 "torso signaling pathway" evidence=NAS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=TAS

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0005543 "phospholipid binding" evidence=IEA

GO:0045678 "positive regulation of R7 cell differentiation" evidence=IGI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IBA

UNIPROTKB|E2QUY1 RASA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 246 (91.7 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
 Identities = 55/128 (42%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLPK 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARILECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F8W6X8 RASA3 "cDNA FLJ58396" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
 Identities = 55/128 (42%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct:    14 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQK 72

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:    73 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLATRIVECQGLPIVNGQC 132

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   133 DPYATVTL 140

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

MGI|MGI:1197013 Rasa3 "RAS p21 protein activator 3" [Mus musculus (taxid:10090)]

 Score = 251 (93.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 56/128 (43%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL R
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQR 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARIFECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0007165 "signal transduction" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO;IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

RGD|69365 Rasa3 "RAS p21 protein activator 3" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 56/128 (43%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL R
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQR 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARIFECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0015278 "calcium-release channel activity" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO;IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSI5 Rasa3 "Ras GTPase-activating protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 56/128 (43%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL R
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQR 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLAARIFECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q14644 RASA3 "Ras GTPase-activating protein 3" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 55/128 (42%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQK 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLATRIVECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0005096 "GTPase activator activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IDA

GO:0015278 "calcium-release channel activity" evidence=IDA

UNIPROTKB|Q5ZHM9 RASA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
 Identities = 69/195 (35%), Positives = 102/195 (52%)

Query:    50 IQDLGTLRIRIQYTADHILQPHYYEDL-CT------QILNSPSVNPVTSPFFGEEFQFDI 102
             ++ L +LR +I Y A H++ P+   D  CT      ++  +  V    SP+FGEEF F+I
Sbjct:    10 VRVLQSLRGKI-YDAKHLI-PNKMRDFFCTINLDQEEVFRTQVVEKSLSPYFGEEFYFEI 67

Query:   103 PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162
             PR F+ L+ Y YD+    K  R+ GKV I++ DL   + KE+WF L PV  +SEVQGK+ 
Sbjct:    68 PRTFQWLSFYIYDKSVLQKDLRI-GKVAIKKEDLCNYTGKENWFTLQPVDSNSEVQGKVH 126

Query:   163 IGV----LSTPTS-----LMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNXXXXXXXXXX 212
             + +    L T        L+V++ E  GL  +NGQ CDP A V++    +          
Sbjct:   127 LELKLNELITDNGSVCQQLVVHIKECHGLPLINGQNCDPYATVSL-VGPSRNDQKKTKVK 185

Query:   213 XXXXXXXFNESFMFD 227
                    FNE+F F+
Sbjct:   186 KKTSNPQFNETFYFE 200

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IBA

GO:0032320 "positive regulation of Ras GTPase activity" evidence=IBA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IBA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|F1P4A4 RASA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
 Identities = 56/128 (43%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRTFRHLSFYIFDRD-VFRRDSIIGKVAIQKEDLQK 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T T      L   V E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVVCHKLATRVLECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

UNIPROTKB|F1RN30 RASA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 54/128 (42%), Positives = 75/128 (58%)

Query:    79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
             ++  +  V     PF+GE+F  +IPR FRHL+ Y +DRD   + D ++GKV IQ+ DL +
Sbjct:    46 EVFRTKIVEKSLCPFYGEDFYCEIPRSFRHLSFYVFDRD-VFRRDSIIGKVAIQKEDLQK 104

Query:   139 ISNKEHWFPLTPVTQDSEVQGKIQIGV-LS---TPTS-----LMVNVNEASGLTQVNGQC 189
               N++ WF L  V  DSEVQGK+ + + LS   T +      L   + E  GL  VNGQC
Sbjct:   105 YHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDSGVVCHKLAARILECQGLPIVNGQC 164

Query:   190 DPTAMVTV 197
             DP A VT+
Sbjct:   165 DPYATVTL 172

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=IEA

GO:0015278 "calcium-release channel activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	268
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	5e-33
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	9e-26
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	9e-23
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	8e-20
pfam00168	85	pfam00168, C2, C2 domain	1e-13
cd00030	102	cd00030, C2, C2 domain	5e-13
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-11
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	6e-11
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	9e-10
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-09
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-08
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	3e-07
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-07
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	8e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-06
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-06
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-05
cd00030	102	cd00030, C2, C2 domain	2e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-05
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	5e-05
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	6e-05
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-04
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	4e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	5e-04
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	5e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	5e-04
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	6e-04
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-04
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.001
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	0.002
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	0.002
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.004
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	0.004
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	0.004

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score =  116 bits (293), Expect = 5e-33
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 79  QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138
           ++  + +V     PFFGE+F F+IPR FRHL+ Y YDRD   + D V+GKV I++ DLH+
Sbjct: 34  EVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRR-DSVIGKVAIKKEDLHK 92

Query: 139 ISNKEHWFPLTPVTQDSEVQGKIQIGV 165
              K+ WFPL PV  DSEVQGK+ + +
Sbjct: 93  YYGKDTWFPLQPVDADSEVQGKVHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 98.6 bits (246), Expect = 9e-26
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 16/111 (14%)

Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL- 230
           L V V E S L   NG CDP A VT+ Y++ K D +++KVKKK+++P F+E+F FD ++ 
Sbjct: 2   LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTID 61

Query: 231 --------------GDPIELVVSLHHDISGLN-VFLGEVHIPLNNKETSSS 266
                          + +EL V L H   G   VFLGEV IPL   +  + 
Sbjct: 62  SSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG 112

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 90.5 bits (225), Expect = 9e-23
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 18/112 (16%)

Query: 172 LMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL 230
           L V V E   L    NG CDP A VT++Y+ +K+D +++KVKKK+++P F+E+F F+ ++
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 231 G---------------DPIELVVSLHHDISGL-NVFLGEVHIPLNNKETSSS 266
           G               +  EL V L H      + FLGEV IPL   + + S
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGS 111

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 81.9 bits (203), Expect = 8e-20
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 6/76 (7%)

Query: 91  SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           +PF+GEEF FD P     F  L+ Y  D+    + D V+GKV + + DL +   K+ WFP
Sbjct: 41  NPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR-DIVIGKVALSKLDLGQ--GKDEWFP 97

Query: 148 LTPVTQDSEVQGKIQI 163
           LTPV  DSEVQG +++
Sbjct: 98  LTPVDPDSEVQGSVRL 113

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V V  A  L    +NG+ DP   V V     K D +K+KV K + +PV+NE+F F+ +
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDP--YVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVT 58

Query: 230 LGDPIELVVSL-HHDISGLNVFLGEVH 255
           L +  EL + +  +D  G + F+GEV 
Sbjct: 59  LPELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V V EA  L    +NG+ DP   V++          K+KV K + +PV+NE+F F   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL----GGKQKFKTKVVKNTLNPVWNETFEFPVL 56

Query: 230 LGDPIELVVSL-HHDISGLNVFLGEVHIPLNNKETSS 265
             +   L V +   D    + FLGEV IPL+    S 
Sbjct: 57  DPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSG 93

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)

Query: 171 SLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR 228
           +L V +  A  L      G+ DP   V V    +  + +K+KV K + +PV+NE+F F+ 
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDP--YVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV 58

Query: 229 SLGDPIELVVSL-HHDISGLNVFLGEVHIPLNN 260
              +  EL + +   D  G + F+G+V IPL++
Sbjct: 59  PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK----EHWF 146
           +PF+GEE+   +P  F  ++ Y  D D  S+ D V+GKV++ R     IS      + W 
Sbjct: 45  NPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDD-VIGKVSLTR---EVISAHPRGIDGWM 100

Query: 147 PLTPVTQDSEVQGKIQIGV 165
            LT V  D EVQG+I + +
Sbjct: 101 NLTEVDPDEEVQGEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G++ + +   PT+  L V V +A  L  +   G  DP   V++     K   +K+ VKK 
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 215 SHSPVFNESFMFDRSLG--DPIELVVSLHHDISGL-NVFLGEVHIPLNNKETSSSWW 268
           + +PVFNE+F FD      + + LV+++    S   N  +G+V +  ++       W
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHW 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 159 GKIQIGVL--STPTSLMVNVNEASGLTQVNGQ--CDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G+IQ+ +   S    L+V V++   L   +     DP   + +    +KS  +K+ VKK 
Sbjct: 3   GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62

Query: 215 SHSPVFNESFMFDRSLGDPIE--LVVSLHHD---ISGLNVFLGEVHIPL---NNKETSSS 266
           + +PVF+E+F F  SL +     L V++ +    +S     LG+V I L   +  +  + 
Sbjct: 63  NLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQ 122

Query: 267 W 267
           W
Sbjct: 123 W 123

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 167 STPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDV--QKSKVKKKSHSPVFNE 222
           ++  SL V +  A  L     NG  DP   V +   H   DV   K++VKKK+  P+F+E
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDE 72

Query: 223 SFMFD-----RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
           SF F+      S+   + L     +D+ G N F GE  +PLN+
Sbjct: 73  SFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLND 115

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 170 TSLMVNVNEASGLTQVNG---QCDPTAMVTVHYTHNKSDVQKSK--VKKKSHSPVFNESF 224
            SL V++ E   L   +    + +P   V V+   +KS   K K  VKK + +PVFNE+ 
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNP--YVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETL 71

Query: 225 MFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLN 259
            +  S        + L   HHD  G N FLGEV IPL+
Sbjct: 72  KYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 159 GKIQIGVLSTPTSLMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH 216
           G+I + +      L V V EA  L  +  NG  DP   + +         QK+K  KK+ 
Sbjct: 2   GRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTL 61

Query: 217 SPVFNESFMFDRSLGD 232
           +PV+NE+F FD    D
Sbjct: 62  NPVWNETFTFDLKPAD 77

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 151 VTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKSDVQK 208
           V  +SE   K +     +   L V V EA  L  +   G  D      +    +K   QK
Sbjct: 11  VPPESEGALKSK---KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67

Query: 209 SKVKKKSHSPVFNESFMFDR-SLGDPIELVVSL---HHDISGLNVFLG 252
           + V KKS +PV+N +F++D  S  D  +  + L    HD    N FLG
Sbjct: 68  TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 167 STPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESF 224
            T   L V V +A  L    V+G  DP   V ++Y   +   +K+ VKK + +PVFNESF
Sbjct: 12  PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESF 71

Query: 225 MFD--RSLGDPI--ELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           +FD      + I  E +V L  D    N  +G + +      +    W
Sbjct: 72  VFDIPSEELEDISVEFLV-LDSDRVTKNEVIGRLVLGPKASGSGGHHW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 168 TPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFM 225
           T   + VN+ +A  L    +NG  DP   V + Y   + + +K+ +KK++ +PVFNESF+
Sbjct: 13  TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFI 72

Query: 226 FD---RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           F+     L +   ++  +  D    N  +G++++   +       W
Sbjct: 73  FNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPL 258
           +K+ VKKK+ +PVFNE+  +     +    V++L   H D  G N FLGEV + L
Sbjct: 55  RKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 25/99 (25%)

Query: 172 LMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V+V  A  L     NG+ DP   V  +   N   V K+K  KK+ +PV+NESF     
Sbjct: 1   LTVDVISAENLPSADRNGKSDP--FVKFYL--NGEKVFKTKTIKKTLNPVWNESFEVP-- 54

Query: 230 LGDPIELVVSLHH----------DISGLNVFLGEVHIPL 258
                  V S             D  G +  LG  +I L
Sbjct: 55  -------VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDL 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF---DR 228
           L+V V +A  L   +GQ   +A V + +   K   ++++ K K  +PV+NE  +F   D 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58

Query: 229 SLGDPIELVVSLHHDIS--GLNVFLGEVHIPLNN 260
           S    + L V +++D        FLG V I   +
Sbjct: 59  SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTS 92

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 90  TSPFFGEEFQFDI-PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFP 147
            +P + E F+F +       L V  +D+DR SK D  LG+V I  S+L     + E W P
Sbjct: 43  LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSK-DDFLGEVEIPLSELLDSGKEGELWLP 101

Query: 148 L 148
           L
Sbjct: 102 L 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 169 PTS--LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSK--VKKKSHSPVFNE 222
           PT+  L V + EA  L +  V G  DP   V +H   N   ++K K  +KK++ +P +NE
Sbjct: 12  PTAGKLTVVILEAKNLKKMDVGGLSDP--YVKIHLMQNGKRLKKKKTTIKKRTLNPYYNE 69

Query: 223 SFMFDRSLG--DPIELVVS-LHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           SF F+        + L+V+ L +D  G N  +G+V +  N        W
Sbjct: 70  SFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 22/122 (18%)

Query: 159 GKIQ--IGVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G+IQ  +      ++L + + +A  L     +G  DP   V ++   +K    ++KVK+K
Sbjct: 3   GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDP--FVKIYLLPDKKHKLETKVKRK 60

Query: 215 SHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVF----------LGEVHIPLNNKETS 264
           + +P +NE+F+F+   G P E    L   +  L V           +GEV +PLN  + +
Sbjct: 61  NLNPHWNETFLFE---GFPYE---KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLT 114

Query: 265 SS 266
             
Sbjct: 115 EE 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 160 KIQIGV--LSTPTSLMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKSDVQKSKVKKKS 215
           KI + +   +    L+V +     L  +  NG  DP   + +     K    K++VKKK+
Sbjct: 1   KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60

Query: 216 HSPVFNESFMFDRSLGD----PIELVVSLHHDISGLNVFLGEVHIPLNNK 261
            +P FNE F +D    D     +E+ V    DI   N ++G + + +N K
Sbjct: 61  LNPEFNEEFFYDIKHSDLAKKTLEITV-WDKDIGKSNDYIGGLQLGINAK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 91  SPFFGEEFQFDIPRRF-RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHW 145
           +P + E F+F++P      L +  YD+DR  + D  +G+VTI  SDL      E  
Sbjct: 47  NPVWNETFEFEVPPPELAELEIEVYDKDRFGR-DDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 155 SEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNG-QCDPTAMVTVHYTHNKSDVQKSKVK- 212
           S   G IQ+G+      L V V  A GL Q  G +  P   V V+    K  + K K K 
Sbjct: 14  SPSMGDIQLGLYDKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKI 73

Query: 213 -KKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLN--VFLGEVHIPLNNKETSS---S 266
            +K+  P++ +  +FD S      L V +  D   ++  VF+G   I L++ + S+    
Sbjct: 74  ARKTLDPLYQQQLVFDVSPTGKT-LQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIG 132

Query: 267 WW 268
           W+
Sbjct: 133 WY 134

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF 226
           L V ++ A  L       +P+  V +         QKSKVK+++++PV+ E F F
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKERTNNPVWEEGFTF 53

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 166 LSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSK--VKKKSHSPVFNES 223
           L T   L V V +A  L   NG+      V V+   +   + K K  VK+   +P+FNE+
Sbjct: 11  LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEA 70

Query: 224 FMF 226
            +F
Sbjct: 71  MIF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%)

Query: 158 QGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVH---YTHNKSDVQKSKVKKK 214
            G++++ +     +L V V  A  L  ++G  DP   V  +        +  +K+KV +K
Sbjct: 1   GGQVKLSISYKNGTLFVMVMHAKNLPLLDGS-DPDPYVKTYLLPDPQKTTK-RKTKVVRK 58

Query: 215 SHSPVFNESFMFDRSLGDPIELVVSLH-------HDISGLNVFLGEVHIPLNN 260
           + +P FNE  ++D   G P+E +           HD    N FLG V IPL  
Sbjct: 59  TRNPTFNEMLVYD---GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V + +A  L     +G  DP     V    ++S+ ++SK+ KK+ +P F+ESF+F+  
Sbjct: 18  LNVKLIQARNLQPRDFSGTADPYC--KVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 230 LGDPIEL------VVSLHHDISGLNVFLGEVHIPLNN 260
              P EL      V+    D    +  +G V +PL  
Sbjct: 76  ---PQELPKRTLEVLLYDFDQFSRDECIGVVELPLAE 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L  +V EA  L     NG  DP   V V Y        ++ V KKS  P +NE F F+  
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDP--FVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELM 56

Query: 230 LGDPIELVVSL-HHDISGLNVFLGEVHIPLN 259
            G    L V +   D+   N FLG+V   + 
Sbjct: 57  EGADSPLSVEVWDWDLVSKNDFLGKVVFSIQ 87

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 18/93 (19%)

Query: 70  PHYYEDLCTQILNSPSV---------NPVTSPFFGEEFQF-DIPRRFRHLAVYAYDRDRT 119
           PH Y   C   LN   V         NPV S    EEF F D+P       +   ++ + 
Sbjct: 22  PHPY---CVISLNEVKVARTKVREGPNPVWS----EEFVFDDLPPDVNSFTISLSNKAKR 74

Query: 120 SKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT 152
           SK D  + +VT+Q S L      + W+PL+  +
Sbjct: 75  SK-DSEIAEVTVQLSKLQNGQETDEWYPLSSAS 106

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 207 QKSKVKKKSHSPVFNES--FMFDRSLGDPIELVVSL-HHDISGLNVFLGEVHIPLN 259
           +K+ +K+ + +PV+NE+  +    S  +   L +S+ H+D  G N FLGEV IPL+
Sbjct: 55  RKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLD 110

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 19/99 (19%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V + +A+ L    + G  DP   V V+   +K    ++KV +K+ +PVFNE+F F   
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDP--YVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 230 LGDPIE--LVVSLH-------HDISGLNVFLGEVHIPLN 259
             +     LV S++       HD+      +GEV +PL 
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDL------IGEVRVPLL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 186 NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH-HDI 244
              CDP   V V    ++    +SKVK+K+ +P F+E+F+F  S  +     + L  +D+
Sbjct: 33  VAHCDP--FVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90

Query: 245 SGLNV--FLGEVHIPLNNKETSSS--WW 268
              +    +G V  PL + +       W
Sbjct: 91  DRFSRHCIIGHVLFPLKDLDLVKGGVVW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 174 VNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR 228
           V V EA  L  V G  DP   V V         + + VKK ++ P +NE F F+ 
Sbjct: 8   VRVIEARQL--VGGNIDPVVKVEV-----GGQKKYTSVKKGTNCPFYNEYFFFNF 55

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 15/77 (19%)

Query: 186 NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLGDPIE--------L 236
           +G  DP A V+       +  Q+++V K++ SP ++++ +FD   L    E        +
Sbjct: 19  SGLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLV 73

Query: 237 VVSLH-HDISGLNVFLG 252
           VV L   D  G + FLG
Sbjct: 74  VVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 178 EASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL-GDPI 234
            A  L     NG+ DP   + +     K +  +      + +PVF + F  + +L G+ I
Sbjct: 8   RARNLQPKDPNGKSDP--YLKIKLGKKKIND-RDNYIPNTLNPVFGKMFELEATLPGNSI 64

Query: 235 ELVVSL-HHDISGLNVFLGEVHIPLNNKETSSSWW 268
            L +S+  +D+ G +  +GE  I L ++  S    
Sbjct: 65  -LKISVMDYDLLGSDDLIGETVIDLEDRFFSKHRA 98

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
KOG1028|consensus	421		100.0
KOG2059|consensus	800		99.97
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.94
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.93
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.92
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.91
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.9
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.9
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.9
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.9
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.9
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.89
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.89
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.89
KOG1328|consensus	1103		99.89
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.89
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.88
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.88
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.87
KOG1013|consensus	362		99.87
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.87
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.87
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.87
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.87
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.87
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.86
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.86
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.86
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.86
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.86
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.86
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.86
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.86
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.85
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.85
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.85
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.85
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.85
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.85
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.85
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.85
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.85
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.85
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.85
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.85
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.85
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.85
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.85
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.84
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.84
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.84
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.84
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.84
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.84
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.83
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.83
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.83
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.83
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.83
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.83
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.82
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.82
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.82
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.82
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.82
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.82
KOG1030|consensus	168		99.82
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.82
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.81
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.81
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.81
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.81
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.81
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.81
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.81
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.8
KOG0696|consensus	683		99.8
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.8
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.79
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.79
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.79
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.79
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.79
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.79
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.79
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.79
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.79
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.78
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.78
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.78
KOG1011|consensus	1283		99.78
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.77
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.77
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.77
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.77
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.77
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.77
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.76
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.76
KOG1030|consensus	168		99.76
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.76
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.76
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.76
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.75
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.75
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.75
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.75
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.75
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.75
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.74
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.74
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.74
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.74
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.73
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.73
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.73
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.73
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.73
KOG1028|consensus	421		99.73
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.73
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.73
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.73
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.72
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.72
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.72
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.72
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.72
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.72
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.71
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.71
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.71
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.71
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.71
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.7
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.7
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.69
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.68
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.68
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.68
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.68
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.68
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.68
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.67
KOG0696|consensus	683		99.67
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.67
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.66
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.66
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.66
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.66
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.66
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.65
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.65
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.65
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.65
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.65
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.64
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.64
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.64
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.63
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.63
PLN03008	868	Phospholipase D delta	99.63
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.62
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.61
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.61
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.6
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.6
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.59
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.59
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.58
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.57
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.53
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.53
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.45
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.45
KOG1326|consensus	1105		99.43
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.42
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.4
PLN02952	599	phosphoinositide phospholipase C	99.4
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.4
PLN02223	537	phosphoinositide phospholipase C	99.39
PLN02223	537	phosphoinositide phospholipase C	99.38
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.37
KOG0905|consensus	1639		99.37
PLN03008	868	Phospholipase D delta	99.36
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.34
KOG1326|consensus	1105		99.34
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.32
PLN02222	581	phosphoinositide phospholipase C 2	99.3
PLN02270	808	phospholipase D alpha	99.3
PLN02230	598	phosphoinositide phospholipase C 4	99.29
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.29
KOG1327|consensus	529		99.29
KOG1264|consensus	1267		99.28
PLN02230	598	phosphoinositide phospholipase C 4	99.27
PLN02952	599	phosphoinositide phospholipase C	99.27
PLN02228	567	Phosphoinositide phospholipase C	99.25
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.22
PLN02222	581	phosphoinositide phospholipase C 2	99.22
KOG0169|consensus	746		99.21
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.18
KOG1328|consensus	1103		99.15
PLN02228	567	Phosphoinositide phospholipase C	99.14
KOG1011|consensus	1283		99.13
KOG0169|consensus	746		99.12
KOG1264|consensus	1267		99.08
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.97
KOG1031|consensus	1169		98.93
KOG2059|consensus	800		98.88
KOG1031|consensus	1169		98.87
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.86
PLN02270	808	phospholipase D alpha	98.72
KOG0905|consensus	1639		98.68
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.6
PLN02352	758	phospholipase D epsilon	98.58
KOG2060|consensus	405		98.53
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.5
KOG1013|consensus	362		98.49
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.14
PLN02964	644	phosphatidylserine decarboxylase	98.03
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	98.03
KOG3837|consensus	523		97.96
PLN02964	644	phosphatidylserine decarboxylase	97.74
PLN02352	758	phospholipase D epsilon	97.73
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.68
KOG2060|consensus	405		97.67
KOG1265|consensus	1189		97.67
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.65
KOG1265|consensus	1189		97.54
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.46
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.4
PF15627	156	CEP76-C2: CEP76 C2 domain	97.31
KOG3837|consensus	523		97.1
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.08
KOG1327|consensus	529		97.03
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.85
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.84
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.74
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.65
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.58
KOG1452|consensus	442		96.37
PF15627	156	CEP76-C2: CEP76 C2 domain	96.3
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.15
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	96.15
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.01
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.92
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.75
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.54
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.15
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.05
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.92
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	94.89
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.49
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.35
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.31
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.23
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	94.03
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	93.94
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	93.65
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.43
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.16
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	92.83
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	92.34
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	91.1
KOG4269|consensus	1112		90.67
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	90.53
PF14186	147	Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A	85.22
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	84.5
KOG0694|consensus	694		83.82
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	82.9
KOG0904|consensus	1076		81.9

>KOG1028|consensus

Probab=100.00  E-value=1.7e-40  Score=293.71  Aligned_cols=231  Identities=24%  Similarity=0.374  Sum_probs=207.7

Q ss_pred             cccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCC
Q psy3954          23 ATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTS   91 (268)
Q Consensus        23 ~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~n   91 (268)
                      ....+|.++.++.|..+             ...|.|+|+ +|++|+  +..|.+| ||+        .+.+|++.++|+|
T Consensus       149 ~~~~~G~l~fsl~Yd~~-------------~~~L~V~V~-qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tln  214 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDFE-------------LNLLTVRVI-QAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLN  214 (421)
T ss_pred             cceeeeeEEEEEEeccc-------------CCEEEEEEE-EecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcC
Confidence            45788999999999998             899999999 999999  7677899 999        6889999999999


Q ss_pred             CccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcc-cceEEEEEEEE
Q psy3954          92 PFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSE-VQGKIQIGVLS  167 (268)
Q Consensus        92 P~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~v~l~~  167 (268)
                      |+|||+|.|.|+..   ...|.|.|||.| .++++++||++.++|..+........|.+|.+...... ..|+|.++++|
T Consensus       215 P~fnEtf~f~v~~~~l~~~~L~l~V~~~d-rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y  293 (421)
T KOG1028|consen  215 PVFNETFRFEVPYEELSNRVLHLSVYDFD-RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY  293 (421)
T ss_pred             CccccceEeecCHHHhccCEEEEEEEecC-CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe
Confidence            99999999997776   789999999999 79999999999999999987777889999988654422 23799999999


Q ss_pred             c--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEE
Q psy3954         168 T--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLH  241 (268)
Q Consensus       168 ~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~  241 (268)
                      .  .++|+|.|++|++|+  +..+.+||||++++..+..+..+++|.+++++.||+|||+|.|.++...+++  |.|+||
T Consensus       294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~  373 (421)
T KOG1028|consen  294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW  373 (421)
T ss_pred             ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence            9  799999999999997  6677799999999997777788999999999999999999999999988888  999999


Q ss_pred             ecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         242 HDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       242 d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      |++.+ ++++||++.++..+-..+..||
T Consensus       374 d~d~~~~~~~iG~~~lG~~~~~~~~~hW  401 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCILGSDSTGEEVRHW  401 (421)
T ss_pred             EcccccccceeeEEEecCCCCchHHHHH
Confidence            99999 8889999999998855555555

>KOG2059|consensus

Probab=99.97  E-value=9e-32  Score=239.40  Aligned_cols=207  Identities=41%  Similarity=0.686  Sum_probs=185.2

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d  123 (268)
                      ...|.|+|. +|+|||  +..|+.| ||.      +..||.++.+++.|.|.|+|.|.+|...+.|.|.|||.|  +++|
T Consensus         4 ~~sl~vki~-E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d--~~~D   80 (800)
T KOG2059|consen    4 EQSLKVKIG-EAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD--LKRD   80 (800)
T ss_pred             ccceeEEEe-ecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc--cccc
Confidence            568999999 999999  8899999 999      789999999999999999999999999999999999999  8899


Q ss_pred             ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc----CCeEEEEEceecCC-CCCCCCCCCEEEEEEE
Q psy3954         124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST----PTSLMVNVNEASGL-TQVNGQCDPTAMVTVH  198 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~----~~~L~v~v~~a~~L-~~~~g~~dpyv~v~l~  198 (268)
                      +.||++.|.-+++...++.+.|+.|++.+++.+++|+|++++.+.    ...+...++++|++ |-.++.+|||+.+.+.
T Consensus        81 ~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~  160 (800)
T KOG2059|consen   81 DIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLC  160 (800)
T ss_pred             cccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeec
Confidence            999999999999998889999999999999999999999999987    66677888888877 5566779999999997


Q ss_pred             ecCCcceeeeceeccCCCCCccceEEEEEccCC---------------CCceEEEEEEe-cCCC-CCeeeEEEEEeCCcc
Q psy3954         199 YTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG---------------DPIELVVSLHH-DISG-LNVFLGEVHIPLNNK  261 (268)
Q Consensus       199 ~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~---------------~~~~l~i~V~d-~~~~-~~~~lG~~~l~l~~~  261 (268)
                       ++.+....+|++++++.+|.|+|.|.|.+..+               +.-.|.+++|+ ++.. ++.|+|++.+++...
T Consensus       161 -g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~  239 (800)
T KOG2059|consen  161 -GPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVL  239 (800)
T ss_pred             -ccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhh
Confidence             55555568999999999999999999998654               33349999999 4455 899999999999887


Q ss_pred             CC
Q psy3954         262 ET  263 (268)
Q Consensus       262 ~~  263 (268)
                      ..
T Consensus       240 ~~  241 (800)
T KOG2059|consen  240 RQ  241 (800)
T ss_pred             hh
Confidence            63

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.94  E-value=8.7e-27  Score=169.73  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=97.3

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-  235 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-  235 (268)
                      |+|++++.|.  .+.|+|+|++|+||+ ..|.+||||++++.++.+ ..+++|+++++|+||+|||+|.|.++.+++.. 
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~   78 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS-VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESLDG   78 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence            5799999998  899999999999999 567799999999985433 45779999999999999999999999988887 


Q ss_pred             -EEEEEEecCCC-CCeeeEEEEEeCCcc--CCCCCCC
Q psy3954         236 -LVVSLHHDISG-LNVFLGEVHIPLNNK--ETSSSWW  268 (268)
Q Consensus       236 -l~i~V~d~~~~-~~~~lG~~~l~l~~~--~~~~~~w  268 (268)
                       |.|+|||+|++ ++++||++.++++++  ..+..||
T Consensus        79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W  115 (118)
T cd08677          79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW  115 (118)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence             99999999999 999999999999976  6688888

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.93  E-value=2.3e-25  Score=168.32  Aligned_cols=111  Identities=22%  Similarity=0.266  Sum_probs=99.8

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCCCC----CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLTQV----NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~~~----~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      .|+|.+++.|.  .++|.|.|++|+||+..    .+.+||||++++.++..+..++||+++++++||+|||+|.|.++..
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            39999999996  99999999999999732    2559999999999766666789999999999999999999999988


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ++++  |.|+|||++.+ ++++||++.+++.+.+.+..||
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW  120 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHW  120 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHH
Confidence            8877  99999999998 9999999999999987787777

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.92  E-value=1.2e-24  Score=164.48  Aligned_cols=110  Identities=24%  Similarity=0.293  Sum_probs=99.1

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      |+|.+++.|.  .++|.|.|++|+||+  +..|.+||||++++.+++.+..++||+++++++||+|||+|.|.++..++.
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~   81 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ   81 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence            9999999998  789999999999997  556789999999998766656678999999999999999999999887776


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      +  |.|+|||++.. ++++||++.|+..+.+.+..||
T Consensus        82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW  118 (136)
T cd08406          82 DLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHW  118 (136)
T ss_pred             CcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHH
Confidence            6  99999999988 9999999999998888777777

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.91  E-value=7.3e-24  Score=157.81  Aligned_cols=106  Identities=30%  Similarity=0.415  Sum_probs=94.7

Q ss_pred             ceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-cCCCCc
Q psy3954         158 QGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLGDPI  234 (268)
Q Consensus       158 ~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~~~~~~  234 (268)
                      .|+|.+++.|..+.|.|.|++|+||+  + .+.+||||++++.+++.+..+++|++++++.||+|||+|.|.+ +..++.
T Consensus         1 ~G~l~~~l~y~~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~   79 (122)
T cd08381           1 GGQVKLSISYKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ   79 (122)
T ss_pred             CCeEEEEEEEeCCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence            38999999999999999999999997  5 6779999999998666556789999999999999999999997 555555


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      .  |.|+|||++.+ ++++||++.|+|+++..+
T Consensus        80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             CCEEEEEEEeCCCCcCCcEEEEEEEeccccccC
Confidence            4  99999999988 899999999999999774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.90  E-value=3.8e-23  Score=152.87  Aligned_cols=111  Identities=15%  Similarity=0.298  Sum_probs=96.7

Q ss_pred             eEEEEEEEcccCccc-cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          54 GTLRIRIQYTADHIL-QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|.|+|+ +|++|+ ...|.+| ||+     +++||+++.+ +.||+|||+|.|.++.....|.|+|||+| .+++|++
T Consensus         2 g~L~v~v~-~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d-~~~~dd~   79 (121)
T cd04016           2 GRLSITVV-QAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDER-AFTMDER   79 (121)
T ss_pred             cEEEEEEE-EccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCC-CCcCCce
Confidence            68999999 999998 3368999 998     7789999876 79999999999999877678999999999 8999999


Q ss_pred             eEEEEEecc-ccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         126 LGKVTIQRS-DLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       126 iG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ||++.+++. .+..++..+.|++|.+... ....|+|+++++|
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence            999999996 5666777899999987553 3457999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.90  E-value=3.7e-23  Score=154.26  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=95.1

Q ss_pred             EEEEEEEEc--CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCC-CCccceEEEEEccCCCCc
Q psy3954         160 KIQIGVLST--PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH-SPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       160 ~i~v~l~~~--~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~-nP~~ne~f~f~v~~~~~~  234 (268)
                      +|+++++|.  .++|+|.|++|+||+.  ..+.+||||||.+.+++++..++||+++++++ +|+|||+|.|+++.+..+
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~   81 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG   81 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence            789999999  9999999999999974  34557999999999888878899999999995 699999999999986554


Q ss_pred             e-EEEEEEecCCC-CCeeeEEEEEeCCccCC-CCCCC
Q psy3954         235 E-LVVSLHHDISG-LNVFLGEVHIPLNNKET-SSSWW  268 (268)
Q Consensus       235 ~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~-~~~~w  268 (268)
                      - |.|+|||++.. ++++||++.|+.++... +..||
T Consensus        82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW  118 (135)
T cd08692          82 IQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQW  118 (135)
T ss_pred             eEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhH
Confidence            3 99999999988 99999999999988554 57777

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.90  E-value=3.6e-23  Score=154.90  Aligned_cols=107  Identities=29%  Similarity=0.355  Sum_probs=94.0

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      +|+|++++.|.  .+.|.|+|++|+||+  +.. |.+||||++++.+++....+++|+++++++||+|||+|.|.++..+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            59999999999  569999999999997  333 6799999999986655456789999999999999999999998766


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +..  |.|+|||++.+ ++++||++.++|.++..+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC
Confidence            664  99999999988 899999999999998663

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.90  E-value=5.4e-23  Score=154.16  Aligned_cols=106  Identities=27%  Similarity=0.412  Sum_probs=94.6

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      .|+|.+++.|.  .+.|.|.|++|+||+  +.. |.+||||++++.++.....++||++++++.||+|||+|.|.++..+
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            49999999999  689999999999997  333 7899999999987665566889999999999999999999998777


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +..  |.++|||++.+ ++++||++.|+|+++..
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~  114 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF  114 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence            665  99999999988 99999999999999865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.90  E-value=3.1e-23  Score=151.08  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=93.9

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE---------EEeeecccCCCCCCccCcE
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT---------QILNSPSVNPVTSPFFGEE   97 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~---------~~~~T~~~~~t~nP~wne~   97 (268)
                      +.++.++.|...             .+.|.|+|+ +|++|+ ..|.+| ||+         .+.+|+++++|+||+|||+
T Consensus         1 ~~l~fsL~Y~~~-------------~~~L~V~vi-kA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~   65 (118)
T cd08677           1 PKLHYSLSYDKQ-------------KAELHVNIL-EAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEE   65 (118)
T ss_pred             CeEEEEEEEcCc-------------CCEEEEEEE-EecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccE
Confidence            367888899988             899999999 999999 456699 999         4778999999999999999


Q ss_pred             EEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          98 FQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        98 f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      |.|.++.+   ...|.|.|||+| .++++++||++.++++++....+.++|.+|
T Consensus        66 f~F~v~~~~l~~~tL~~~V~d~D-rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          66 LVFPLPEEESLDGTLTLTLRCCD-RFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEEeCCHHHhCCcEEEEEEEeCC-CCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999887   678999999999 799999999999999998777778888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.89  E-value=1.2e-22  Score=151.14  Aligned_cols=104  Identities=23%  Similarity=0.283  Sum_probs=93.1

Q ss_pred             EEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         160 KIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       160 ~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      +|++++.|.  .+.|.|+|++|+||+  +..|.+||||++++.++..+ ..+++|++++++.||+|||+|.|+++.+++.
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            688999997  789999999999997  45677999999999966554 3588999999999999999999999988888


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .  |.|+|||++.. ++++||++.|+|+++..
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence            6  99999999988 89999999999999855

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.89  E-value=2e-22  Score=153.42  Aligned_cols=106  Identities=25%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             cceEEEEEEEEcCCeEEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         157 VQGKIQIGVLSTPTSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       157 ~~G~i~v~l~~~~~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      ..|+|++++.|..+.|.|.|++|+||+.   ..|.+||||++++.+++++..++||+++++++||+|||+|.|.+. ..-
T Consensus        16 ~~G~l~lsl~y~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~   94 (146)
T cd04028          16 SMGDIQLGLYDKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTG   94 (146)
T ss_pred             CcceEEEEEEeCCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCC
Confidence            4799999999999999999999999963   457799999999986655566899999999999999999999987 222


Q ss_pred             ceEEEEEE-ecCCC-CCeeeEEEEEeCCccCC
Q psy3954         234 IELVVSLH-HDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       234 ~~l~i~V~-d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ..|.|+|| |++.+ ++++||++.|+|+++..
T Consensus        95 ~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~  126 (146)
T cd04028          95 KTLQVIVWGDYGRMDKKVFMGVAQILLDDLDL  126 (146)
T ss_pred             CEEEEEEEeCCCCCCCCceEEEEEEEcccccC
Confidence            23999999 57777 89999999999999865

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.89  E-value=1.5e-22  Score=149.89  Aligned_cols=107  Identities=22%  Similarity=0.372  Sum_probs=93.8

Q ss_pred             eEEEEEEEEcCCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-E
Q psy3954         159 GKIQIGVLSTPTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-L  236 (268)
Q Consensus       159 G~i~v~l~~~~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l  236 (268)
                      |+|.+++.|..+.|.|+|++|+||+.. .|.+||||++++.+++.+..+++|++++++.||+|||+|.|.++..++.. |
T Consensus         1 G~l~l~~~~~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l   80 (119)
T cd08685           1 GQLKLSIEGQNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRL   80 (119)
T ss_pred             CEEEEEEEEcCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEE
Confidence            889999999999999999999999632 67799999999997665566789999999999999999999998766655 8


Q ss_pred             EEEEEecCCC--CCeeeEEEEEeCCccCCCC
Q psy3954         237 VVSLHHDISG--LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       237 ~i~V~d~~~~--~~~~lG~~~l~l~~~~~~~  265 (268)
                      .|+|||++..  ++++||++.|++.++..+.
T Consensus        81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~  111 (119)
T cd08685          81 LVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK  111 (119)
T ss_pred             EEEEECCCCCcCCCEEEEEEEecHHHhccCc
Confidence            9999999877  4799999999999997643

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>KOG1328|consensus

Probab=99.89  E-value=6.8e-24  Score=189.64  Aligned_cols=95  Identities=26%  Similarity=0.342  Sum_probs=82.5

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC--cceeeeceeccCCCCCccceEEEEEccCCCCce----EEEEE
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN--KSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE----LVVSL  240 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~----l~i~V  240 (268)
                      ...|.|.|+.|+++.  |.+|.+||||.|.+.+...  ....++|.|+++|+||+|+|+|+|.|+.+....    |.|+|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            667889999999994  8999999999999984333  245789999999999999999999998765542    99999


Q ss_pred             EecCCC-CCeeeEEEEEeCCccCC
Q psy3954         241 HHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       241 ~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +|+|-. .|+|-|++.+.|.++..
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eccceecccccchHHHHhhCCCCC
Confidence            999999 99999999999988865

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.89  E-value=2.8e-22  Score=149.90  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=94.2

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      .|+|++++.|.  .+.|.|.|++|+||+  +. .|.+||||++++.+++.+..++||++++++.||+|||+|.|.++..+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   80 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ   80 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence            39999999996  889999999999997  33 46799999999986555556789999999999999999999998766


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +..  |.|+|||++.. ++++||++.+++.++...
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~  115 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFD  115 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccccc
Confidence            654  99999999988 999999999999999764

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.88  E-value=3.2e-22  Score=148.75  Aligned_cols=110  Identities=46%  Similarity=0.914  Sum_probs=97.8

Q ss_pred             EEEEEEcccCccc---cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          56 LRIRIQYTADHIL---QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        56 L~V~v~~~a~~L~---~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|+|+ +|+||+   +..|.+| ||+      ..++|+++++|+||+|||+|.|.++.....|.|.|||++ ..++|++
T Consensus         2 l~v~v~-~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~-~~~~~~~   79 (121)
T cd08401           2 LKIKIG-EAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRD-VLRRDSV   79 (121)
T ss_pred             eEEEEE-EccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECC-CCCCCce
Confidence            789999 999999   2357889 999      468999999999999999999999876789999999999 7889999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ||++.++++++......+.|++|++........|+|++++.+
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            999999999998777789999999876666678999998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.88  E-value=6.2e-22  Score=148.55  Aligned_cols=108  Identities=23%  Similarity=0.441  Sum_probs=93.7

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC------CCcEEEEEEEeCCCCCC
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR------RFRHLAVYAYDRDRTSK  121 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~------~~~~l~~~v~d~d~~~~  121 (268)
                      ++|+|+ +|+||+  +..|.+| ||+     .++||+++++++||+|||+|.|.++.      ....|.|+|||++ .++
T Consensus         1 ~~V~V~-~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~-~~~   78 (126)
T cd08682           1 VQVTVL-QARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN-LLG   78 (126)
T ss_pred             CEEEEE-ECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc-ccC
Confidence            479999 999999  7788999 999     78899999999999999999999877      3688999999999 788


Q ss_pred             CCceeEEEEEeccccc--cccCccceecCcccC-CCcccceEEEEEE
Q psy3954         122 TDRVLGKVTIQRSDLH--RISNKEHWFPLTPVT-QDSEVQGKIQIGV  165 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~--~~~~~~~w~~L~~~~-~~~~~~G~i~v~l  165 (268)
                      +|++||++.++++++.  .+.....|++|.+.. ......|+|++++
T Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence            8999999999999987  455678999998543 2344689999886

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.88  E-value=3.6e-22  Score=151.64  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=96.1

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      |+|.+++.|.  .++|.|+|++|+||+  +..|.+||||++++.++.+ ...++||++++++.||+|||+|.|+++..++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            7899999998  699999999999997  5677899999999985433 3457899999999999999999999988777


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCC-CCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKET-SSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~-~~~~w  268 (268)
                      ..  |.|+|||++.+ ++++||++.+++...+. +..||
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW  120 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHW  120 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHH
Confidence            75  99999999988 99999999999998875 44666

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.87  E-value=1.4e-21  Score=148.78  Aligned_cols=112  Identities=14%  Similarity=0.223  Sum_probs=98.2

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc---cCCCCCC-ceE----------EEeeecccCCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL---QPHYYED-LCT----------QILNSPSVNPVTS   91 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~---~~~~~~d-yv~----------~~~~T~~~~~t~n   91 (268)
                      .+|.+..++.|  +             .+.|.|+|+ +|+||+   +..|.+| ||+          .+.||+++++|+|
T Consensus        16 ~~G~l~lsl~y--~-------------~~~L~V~Vi-~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktln   79 (146)
T cd04028          16 SMGDIQLGLYD--K-------------KGQLEVEVI-RARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLD   79 (146)
T ss_pred             CcceEEEEEEe--C-------------CCEEEEEEE-EeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCC
Confidence            57899999888  3             478999999 999998   3567899 999          3789999999999


Q ss_pred             CccCcEEEEEecCCCcEEEEEEE-eCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC
Q psy3954          92 PFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD  154 (268)
Q Consensus        92 P~wne~f~f~v~~~~~~l~~~v~-d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  154 (268)
                      |+|||+|.|.++.....|.|+|| |.+ .++++++||++.|+|+++........|++|.+....
T Consensus        80 PvfNE~F~f~v~l~~~~L~v~V~~d~~-~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~  142 (146)
T cd04028          80 PLYQQQLVFDVSPTGKTLQVIVWGDYG-RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL  142 (146)
T ss_pred             CccCCeEEEEEcCCCCEEEEEEEeCCC-CCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence            99999999999866889999999 577 788899999999999999877778899999876543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG1013|consensus

Probab=99.87  E-value=4.8e-23  Score=169.85  Aligned_cols=215  Identities=19%  Similarity=0.252  Sum_probs=177.9

Q ss_pred             CCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEE-ecCC---CcEEEEEE
Q psy3954          51 QDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYA  113 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v  113 (268)
                      .....+..+|. .|.+|.  +.++..| |++          .+.||++..+++||.|||.-.+. +..+   ...+++.|
T Consensus        90 ~~~~~~~~tl~-~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~v  168 (362)
T KOG1013|consen   90 SESRMLDTTLD-RAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVV  168 (362)
T ss_pred             hhhhhcceeec-hhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheee
Confidence            33677899999 999998  8899999 998          66899999999999999877766 3333   56789999


Q ss_pred             EeCCCCCCCCceeEEEEEeccccccccCc--cceecCccc----C-CCcccceEEEEEEEEc--CCeEEEEEceecCCC-
Q psy3954         114 YDRDRTSKTDRVLGKVTIQRSDLHRISNK--EHWFPLTPV----T-QDSEVQGKIQIGVLST--PTSLMVNVNEASGLT-  183 (268)
Q Consensus       114 ~d~d~~~~~d~~iG~~~i~l~~l~~~~~~--~~w~~L~~~----~-~~~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~-  183 (268)
                      +|.+ .+..++++|+..+++..+...+..  ..|+.-..+    + ..-+.+|+|.+++.|.  ...+.|++++|+.|. 
T Consensus       169 cdn~-~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~s  247 (362)
T KOG1013|consen  169 CDND-KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLAS  247 (362)
T ss_pred             ccCc-ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeec
Confidence            9999 788899999999999888755432  344433222    1 1236789999999998  788999999999996 


Q ss_pred             -CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-CCeeeEEEEEeCC
Q psy3954         184 -QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLN  259 (268)
Q Consensus       184 -~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~  259 (268)
                       |.+|.+||||+.++..+..+..++||.+.+++++|+||+.|.|.+...++..  +.|+|||++.. .++++|.+..+..
T Consensus       248 sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  248 SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence             7899999999999996666777899999999999999999999999988876  99999999999 9999999888776


Q ss_pred             ccCCCCCC
Q psy3954         260 NKETSSSW  267 (268)
Q Consensus       260 ~~~~~~~~  267 (268)
                      ....-.-|
T Consensus       328 rr~~v~~h  335 (362)
T KOG1013|consen  328 RRGEVHKH  335 (362)
T ss_pred             ccchhhcC
Confidence            66553333

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.87  E-value=1.3e-21  Score=146.44  Aligned_cols=107  Identities=19%  Similarity=0.380  Sum_probs=94.9

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      |.+..+++|...             .+.|.|+|+ +|+||+  +.. |.+| ||+          .++||+++++++||+
T Consensus         2 G~i~~sl~y~~~-------------~~~L~V~vi-~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~   67 (125)
T cd08393           2 GSVQFALDYDPK-------------LRELHVHVI-QCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPV   67 (125)
T ss_pred             cEEEEEEEEECC-------------CCEEEEEEE-EeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCc
Confidence            678888888876             789999999 999999  554 7899 998          347999999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |||+|.|.++.+   ...|.|+|||.+ .++++++||++.++|+++........|++|+
T Consensus        68 ~nE~f~f~v~~~~l~~~~L~~~V~d~~-~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          68 FNETLRYKVEREELPTRVLNLSVWHRD-SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             cCceEEEECCHHHhCCCEEEEEEEeCC-CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            999999998764   578999999999 7889999999999999998777788999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.87  E-value=9.5e-22  Score=149.48  Aligned_cols=111  Identities=25%  Similarity=0.384  Sum_probs=95.9

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|.+++.|.  .+.|.|.|++|+||+  +..|.+||||++++..+.....+++|++++++.||.|||+|.|.++...+
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence            49999999997  789999999999997  55778999999999754444457899999999999999999999987666


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..  |.|+|||++.. ++++||++.+++.+...+..+|
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w  118 (136)
T cd08404          81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHW  118 (136)
T ss_pred             CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHH
Confidence            54  89999999998 8999999999999966566665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.87  E-value=3.4e-21  Score=143.50  Aligned_cols=111  Identities=21%  Similarity=0.258  Sum_probs=98.5

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      +|+|+|+ +|++|+  +..+.+| ||+      ..++|+++++++||+|||+|.|.+......|.|+|||++ ..++|++
T Consensus         1 ~L~v~v~-~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d-~~~~~~~   78 (121)
T cd04042           1 QLDIHLK-EGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYD-RGLTDDF   78 (121)
T ss_pred             CeEEEEE-EeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCC-CCCCCcc
Confidence            4899999 999998  7778999 998      578999999999999999999998776789999999999 7888999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ||++.++++++..+...+.|++|.+... ....|+|++.+.|.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~  120 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDPNS-DEDLGYISLVVTLT  120 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence            9999999999998888899999976543 34589999998863

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.87  E-value=2.1e-21  Score=145.19  Aligned_cols=108  Identities=16%  Similarity=0.245  Sum_probs=96.1

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cC-CCCCC-ceE----------EEeeecccCCCCCC
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QP-HYYED-LCT----------QILNSPSVNPVTSP   92 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~-~~~~d-yv~----------~~~~T~~~~~t~nP   92 (268)
                      .|.++.+++|..+             .+.|.|+|+ +|+||+  +. .+.+| ||+          .+.||+++++++||
T Consensus         1 ~G~i~~sl~y~~~-------------~~~L~V~Vi-~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd04029           1 SGEILFSLSYDYK-------------TQSLNVHVK-ECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP   66 (125)
T ss_pred             CcEEEEEEEEECC-------------CCeEEEEEE-EecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence            4788999999766             789999999 999998  43 57899 998          35789999999999


Q ss_pred             ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      +|||+|.|.++.+   ...|.|+|||++ ..+++++||++.+++.++...+..+.|++|+
T Consensus        67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~-~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          67 VYNETLKYSISHSQLETRTLQLSVWHYD-RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             cccceEEEECCHHHhCCCEEEEEEEECC-CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9999999998764   578999999999 7889999999999999999888899999884

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.87  E-value=1.2e-21  Score=148.84  Aligned_cols=111  Identities=25%  Similarity=0.282  Sum_probs=94.4

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      .|+|++++.|.  .++|.|.|++|+||+.. .+.+||||++.+.+++....+++|++++++.||+|||+|.|.++..+++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~   80 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD   80 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC
Confidence            39999999998  78999999999999722 6679999999998655445678999999999999999999999887776


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccC--CCCCCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKE--TSSSWW  268 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~--~~~~~w  268 (268)
                      .  |.|+|||++.. ++++||++.|+.....  .+..||
T Consensus        81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW  119 (137)
T cd08409          81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW  119 (137)
T ss_pred             ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHH
Confidence            5  99999999988 9999999999976443  345555

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.86  E-value=1.3e-21  Score=148.71  Aligned_cols=111  Identities=24%  Similarity=0.349  Sum_probs=96.5

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++.+..++....+++|++++++.||.|||.|.|.++..++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   80 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI   80 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence            49999999997  889999999999997  45678999999999754444567899999999999999999999887666


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      +.  |.|+|||++.+ ++++||++.|++.+.+.+..+|
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W  118 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHW  118 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHH
Confidence            54  99999999988 8999999999999877666665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.86  E-value=3e-21  Score=144.23  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=97.8

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w   94 (268)
                      ++|.+..++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+        ++.||+++++ +||+|
T Consensus         1 ~~G~l~~sl~Y~~~-------------~~~L~V~Vi-~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~f   65 (124)
T cd08389           1 KCGDLDVAFEYDPS-------------ARKLTVTVI-RAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVF   65 (124)
T ss_pred             CCEEEEEEEEECCC-------------CCEEEEEEE-EecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcc
Confidence            46889999999977             789999999 999999  7778889 987        6789999988 99999


Q ss_pred             CcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          95 GEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        95 ne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||+|.|. ++.+   ...|.|+|||++ .++++++||++.++|+++........|++|+|
T Consensus        66 nE~F~f~~i~~~~l~~~~L~~~V~~~~-~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          66 NETFTFSRVEPEELNNMALRFRLYGVE-RMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cCEEEECCCCHHHhccCEEEEEEEECC-CcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            9999998 6654   688999999999 78899999999999999988888999999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.86  E-value=2.9e-21  Score=143.78  Aligned_cols=103  Identities=24%  Similarity=0.356  Sum_probs=90.7

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..+++|. .              +.|.|+|+ +|++|+  + .+.+| ||+          .++||+++++++||+|
T Consensus         2 G~l~~~l~y~-~--------------~~L~V~Vi-~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~w   64 (122)
T cd08381           2 GQVKLSISYK-N--------------GTLFVMVM-HAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTF   64 (122)
T ss_pred             CeEEEEEEEe-C--------------CEEEEEEE-EeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCc
Confidence            5677777777 2              68999999 999999  6 88999 999          3678999999999999


Q ss_pred             CcEEEEEe-cCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          95 GEEFQFDI-PRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        95 ne~f~f~v-~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      ||+|.|.+ +..   ...|.|+|||++ ..+++++||++.++|+++...+..+.|++|
T Consensus        65 nE~F~f~~~~~~~l~~~~L~~~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          65 NEMLVYDGLPVEDLQQRVLQVSVWSHD-SLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             ccEEEEecCChHHhCCCEEEEEEEeCC-CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            99999997 433   689999999999 788999999999999999977778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=4.3e-21  Score=144.17  Aligned_cols=111  Identities=20%  Similarity=0.289  Sum_probs=96.1

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCCCCCC-
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSK-  121 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~-  121 (268)
                      .|+|+|+ +|++|+  +..+.+| ||+     +.+||+++++++||+|||.|.|.+...    ...|.|+|||.+ .++ 
T Consensus         1 ~L~V~vi-~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~-~~~~   78 (127)
T cd04022           1 KLVVEVV-DAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR-RSGR   78 (127)
T ss_pred             CeEEEEE-EeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC-CCcC
Confidence            3899999 999998  6778899 999     788999999999999999999998754    368999999999 665 


Q ss_pred             CCceeEEEEEeccccc-cccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         122 TDRVLGKVTIQRSDLH-RISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      .|++||++.++++++. .+.....|++|+........+|+|++++.+
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            7999999999999987 456678999998765445578999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.86  E-value=2.2e-21  Score=147.53  Aligned_cols=111  Identities=25%  Similarity=0.474  Sum_probs=95.1

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|.+++.|.  .+.|.|+|++|+||+  +..|.+||||++.+..++....+++|++++++.||.|||+|.|.++.+.+
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~   80 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence            49999999997  689999999999997  56778999999999754444457899999999999999999999876655


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..  |.|+|||++.. ++++||++.+++.+.+....+|
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w  118 (136)
T cd08405          81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW  118 (136)
T ss_pred             CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHH
Confidence            43  99999999988 8999999999999876555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.86  E-value=2.3e-21  Score=147.03  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      |+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..+.....+++|++++++.||.|||+|.|.++..+++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            8999999995  889999999999997  567789999999997444445678999999999999999999999877676


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .  |.|+|||++.. ++++||++.|+..+...
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~  112 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP  112 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc
Confidence            5  99999999988 99999999998876655

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=6.5e-21  Score=142.63  Aligned_cols=109  Identities=28%  Similarity=0.405  Sum_probs=93.3

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|.+++.|.  .+.|.|+|++|+||+  +..|.+||||++++.++  ...+++|++++++.||+|||+|.|.++..++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   79 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETFTFKVPYSEL   79 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence            59999999996  789999999999997  45677999999999733  2347899999999999999999999876555


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCC--CCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKET--SSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~--~~~~w  268 (268)
                      ..  |.|+|||++.+ ++++||++.++++++..  ....|
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W  119 (124)
T cd08385          80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW  119 (124)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceE
Confidence            43  99999999988 89999999999999855  34444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.86  E-value=3.3e-21  Score=146.18  Aligned_cols=110  Identities=20%  Similarity=0.353  Sum_probs=95.3

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      |+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..++....+++|++++++.||.|||+|.|.++.+.+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            8899999998  789999999999997  456789999999997544445678999999999999999999998766665


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      .  |.|+|||++.. ++++||++.+++.....+..+|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w  117 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHW  117 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHH
Confidence            4  99999999988 8999999999998776666665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.86  E-value=6.9e-21  Score=142.72  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=94.0

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE----------EEeeecccCCCCCC
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT----------QILNSPSVNPVTSP   92 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~----------~~~~T~~~~~t~nP   92 (268)
                      .|.+..+++|...             .+.|.|+|+ +|+||+  +.. |.+| ||+          .+.||+++++++||
T Consensus         1 ~G~i~~sl~Y~~~-------------~~~L~V~V~-~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP   66 (128)
T cd08392           1 TGEIEFALHYNFR-------------TSCLEITIK-ACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP   66 (128)
T ss_pred             CcEEEEEEEEeCC-------------CCEEEEEEE-ecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence            3788889999977             789999999 999998  544 8899 999          36799999999999


Q ss_pred             ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc---cCccceecC
Q psy3954          93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI---SNKEHWFPL  148 (268)
Q Consensus        93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~---~~~~~w~~L  148 (268)
                      +|||+|.|.++..   ...|.+.|||.+ .++++++||++.|+|+++...   .....||+|
T Consensus        67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          67 VFNETLKYVVEADLLSSRQLQVSVWHSR-TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             ccceEEEEEcCHHHhCCcEEEEEEEeCC-CCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            9999999998775   579999999999 788999999999999998753   356789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.85  E-value=1.7e-20  Score=140.51  Aligned_cols=112  Identities=18%  Similarity=0.364  Sum_probs=95.0

Q ss_pred             CeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCc
Q psy3954          53 LGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~  124 (268)
                      ...|+|+|+ +|++|+. .+.+| ||+      +..||++. +++||.|||+|.|.+... ...+.|.|||.+ ..++|+
T Consensus         3 ~~~L~V~Vi-~A~~L~~-~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~-~~~~d~   78 (126)
T cd08400           3 VRSLQLNVL-EAHKLPV-KHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA-KRSKDS   78 (126)
T ss_pred             eeEEEEEEE-EeeCCCC-CCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC-CCCCCC
Confidence            457999999 9999993 45789 999      45789875 689999999999986554 467999999999 788999


Q ss_pred             eeEEEEEeccccccccCccceecCcccCC-CcccceEEEEEEEEc
Q psy3954         125 VLGKVTIQRSDLHRISNKEHWFPLTPVTQ-DSEVQGKIQIGVLST  168 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~~G~i~v~l~~~  168 (268)
                      +||++.+|++++..+...+.|++|.+... .....|+|++++.|.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~  123 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS  123 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence            99999999999988777899999988754 345679999999985

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=4.6e-21  Score=145.20  Aligned_cols=109  Identities=27%  Similarity=0.463  Sum_probs=93.5

Q ss_pred             EEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954         160 KIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE  235 (268)
Q Consensus       160 ~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~  235 (268)
                      .|++++.|.  .+.|.|+|++|++|+  +..|.+||||++.+.++.....+++|++++++.||+|||+|.|.+...++..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            378899997  799999999999997  5567899999999985544456789999999999999999999988766653


Q ss_pred             --EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         236 --LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       236 --l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                        |.|+|||++.. ++++||++.+++++......+|
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W  116 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHW  116 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHH
Confidence              99999999988 8999999999999866655555

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=7.4e-21  Score=141.54  Aligned_cols=107  Identities=21%  Similarity=0.363  Sum_probs=92.0

Q ss_pred             EEEEEEEcccCc---cc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC---
Q psy3954          55 TLRIRIQYTADH---IL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS---  120 (268)
Q Consensus        55 ~L~V~v~~~a~~---L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~---  120 (268)
                      .|.|+|+ +|++   |+  +..|.+| ||+     ++.||+++++++||+|||+|.|.+......|.|+|||.+ ..   
T Consensus         1 ~L~v~v~-~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d-~~~~~   78 (126)
T cd08379           1 ILEVGIL-GAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNS-QSHWK   78 (126)
T ss_pred             CeEEEEE-EeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECC-Ccccc
Confidence            3889999 9999   66  7789999 999     788999999999999999999999877679999999999 55   


Q ss_pred             ---CCCceeEEEEEeccccccccCccceecCcccCCC-cccceEEEE
Q psy3954         121 ---KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD-SEVQGKIQI  163 (268)
Q Consensus       121 ---~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~v  163 (268)
                         .+|++||++.++++.+..+.....|++|.+.... ....|+|+.
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence               3899999999999999887778999999865432 335677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.85  E-value=1.2e-20  Score=141.68  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=90.0

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEE-EccCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF-DRSLG  231 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f-~v~~~  231 (268)
                      .|+|.+++.|.  .+.|.|+|++|+||+  +.. |.+||||++.+.++  ..++.+|++++++.||.|||+|.| .++..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~   79 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYDETFTFYGIPYN   79 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence            69999999998  789999999999997  343 77999999999733  345679999999999999999999 46555


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++..  |.++|||++.+ ++++||++.++|+++..+
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence            5443  99999999988 999999999999999664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.85  E-value=9.3e-21  Score=141.54  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=90.9

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~  232 (268)
                      .|+|++++.|.  .++|.|+|++|+||+  +..|.+||||++.+.+.  +..+++|+++++ .||+|||+|.|+ ++..+
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~   78 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQRAKTKVQRG-PNPVFNETFTFSRVEPEE   78 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC--CcceeecccccC-CCCcccCEEEECCCCHHH
Confidence            59999999999  589999999999997  45677999999988743  345789999988 999999999998 77666


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +..  |.|+|||++.+ ++++||++.|+|+.+..+
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~  113 (124)
T cd08389          79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLE  113 (124)
T ss_pred             hccCEEEEEEEECCCcccCceEEEEEEeccccCCC
Confidence            665  99999999988 899999999999999764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=1.3e-20  Score=141.11  Aligned_cols=111  Identities=25%  Similarity=0.350  Sum_probs=92.2

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC-CC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL-GD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~-~~  232 (268)
                      .|+|.+++.|.  .+.|.|+|++|++|+  +..+.+||||++++..++....+++|++++++.||+|||+|.|.+.. .+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            69999999999  689999999999997  45677999999999754444567899999999999999999998533 44


Q ss_pred             Cc--eEEEEEEecCCC-CCeeeEEEEEeCCccC-CCCCCC
Q psy3954         233 PI--ELVVSLHHDISG-LNVFLGEVHIPLNNKE-TSSSWW  268 (268)
Q Consensus       233 ~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~-~~~~~w  268 (268)
                      +.  .|.|+|||++.. ++++||++.+++++.. .+...|
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W  121 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHW  121 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcce
Confidence            43  399999999988 8999999999999832 244444

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.85  E-value=1.5e-20  Score=140.57  Aligned_cols=105  Identities=27%  Similarity=0.361  Sum_probs=92.3

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|++++.|.  .+.|.|.|++|+||+  +..|.+||||++++.++.  ..+++|++++++.||+|||+|.|.++..++
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   79 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SNTKQSKIHKKTLNPEFDESFVFEVPPQEL   79 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence            59999999999  789999999999997  557789999999996332  346899999999999999999999887665


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ..  |.|+|||++.+ ++++||++.++++++..+
T Consensus        80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  113 (124)
T cd08387          80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLS  113 (124)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEEecccccCC
Confidence            54  99999999988 899999999999999753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.85  E-value=1.6e-20  Score=140.91  Aligned_cols=111  Identities=21%  Similarity=0.380  Sum_probs=97.2

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG  127 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG  127 (268)
                      |.|+|+ +|++|+...+.+| ||+       ..+||+++++++||+|||+|.|.+......|.|+|||.+ ..++|++||
T Consensus         1 l~v~v~-~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~~~~~~~lG   78 (126)
T cd08678           1 LLVKNI-KANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNG-KKSDSKFLG   78 (126)
T ss_pred             CEEEEE-EecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECC-CCCCCceEE
Confidence            579999 9999986567899 998       457999999999999999999999776788999999999 788899999


Q ss_pred             EEEEeccccccccCccceecCcccCC-CcccceEEEEEEEEc
Q psy3954         128 KVTIQRSDLHRISNKEHWFPLTPVTQ-DSEVQGKIQIGVLST  168 (268)
Q Consensus       128 ~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~~G~i~v~l~~~  168 (268)
                      ++.+++.++........|++|.+... .....|+|.+++.|.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence            99999999987777789999987642 345689999999885

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.85  E-value=1.3e-20  Score=141.03  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=97.2

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w   94 (268)
                      +.|.+..+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ..+||+++++++||+|
T Consensus         1 ~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~w   66 (124)
T cd08385           1 KLGKLQFSLDYDFQ-------------SNQLTVGII-QAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF   66 (124)
T ss_pred             CccEEEEEEEEeCC-------------CCEEEEEEE-EeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCce
Confidence            46888888889877             789999999 999998  6778899 998        3569999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      ||+|.|.++..   ...|.|+|||.+ .++++++||++.++++++..+...+.|++|.
T Consensus        67 ne~f~f~i~~~~l~~~~l~~~V~d~d-~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          67 NETFTFKVPYSELGNKTLVFSVYDFD-RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             eeeEEEeCCHHHhCCCEEEEEEEeCC-CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999998764   578999999999 7888999999999999998778889999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.85  E-value=1.2e-20  Score=139.89  Aligned_cols=108  Identities=20%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d  123 (268)
                      |.|.|+|+ +|++|+  +..+.+| ||+     ...+|+++.+ ++||+|||.|.|.++.. .+.|.|+|||++ ..+ |
T Consensus         1 g~L~V~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~-~~~-~   77 (118)
T cd08681           1 GTLVVVVL-KARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD-KRK-P   77 (118)
T ss_pred             CEEEEEEE-EccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC-CCC-C
Confidence            57999999 999999  6778899 998     6788998754 79999999999999875 688999999999 665 8


Q ss_pred             ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ++||++.++++++..+.....|++|....   ...|+|++++.|
T Consensus        78 ~~iG~~~~~l~~~~~~~~~~~w~~L~~~~---~~~G~i~l~l~f  118 (118)
T cd08681          78 DLIGDTEVDLSPALKEGEFDDWYELTLKG---RYAGEVYLELTF  118 (118)
T ss_pred             cceEEEEEecHHHhhcCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence            89999999999987666789999997533   457999999876

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.85  E-value=1.4e-20  Score=140.88  Aligned_cols=108  Identities=22%  Similarity=0.369  Sum_probs=96.9

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFG   95 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wn   95 (268)
                      .|.++.++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ..+||+++++++||+||
T Consensus         2 ~G~l~~sl~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   67 (124)
T cd08387           2 RGELHFSLEYDKD-------------MGILNVKLI-QARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD   67 (124)
T ss_pred             CCEEEEEEEECCC-------------CCEEEEEEE-EeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence            4788888888776             789999999 999999  7788899 998        46899999999999999


Q ss_pred             cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |+|.|.++..   ...|.|+|||.+ .+++|++||++.++++++......+.|++|+
T Consensus        68 e~f~f~v~~~~l~~~~l~i~V~d~~-~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          68 ESFVFEVPPQELPKRTLEVLLYDFD-QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             cEEEEeCCHHHhCCCEEEEEEEECC-CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9999998775   578999999999 7888999999999999998777889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.85  E-value=1.2e-20  Score=141.69  Aligned_cols=110  Identities=17%  Similarity=0.208  Sum_probs=94.3

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE--------EEeeecccCCCCCCc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT--------QILNSPSVNPVTSPF   93 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~--------~~~~T~~~~~t~nP~   93 (268)
                      ++|.+..+++|...             .+.|.|+|+ +|++|+  +.. +.+| ||+        ++.||+++++++||+
T Consensus         1 ~~G~l~~~l~y~~~-------------~~~L~V~Vi-~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~   66 (128)
T cd08388           1 KLGTLFFSLRYNSE-------------KKALLVNII-ECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPV   66 (128)
T ss_pred             CCeEEEEEEEEECC-------------CCEEEEEEE-EeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCc
Confidence            36888899989887             789999999 999999  554 8899 998        466999999999999


Q ss_pred             cCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc--cCccceecCcc
Q psy3954          94 FGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI--SNKEHWFPLTP  150 (268)
Q Consensus        94 wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~  150 (268)
                      |||+|.|. ++..   ...|.|+|||+| .+++|++||++.++|+++...  .+...|.+|+|
T Consensus        67 wnE~F~f~~~~~~~~~~~~L~~~V~d~d-~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          67 YDETFTFYGIPYNQLQDLSLHFAVLSFD-RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             eeeEEEEcccCHHHhCCCEEEEEEEEcC-CCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999994 5543   467999999999 788999999999999999754  55778998865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.85  E-value=1.9e-20  Score=145.95  Aligned_cols=106  Identities=29%  Similarity=0.404  Sum_probs=90.6

Q ss_pred             ceEEEEEEEEcC--------------CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccc
Q psy3954         158 QGKIQIGVLSTP--------------TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN  221 (268)
Q Consensus       158 ~G~i~v~l~~~~--------------~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~n  221 (268)
                      .|+|.+++.|..              +.|.|+|++|+||+  +..|.+||||++++..+.....+++|++++++.||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            489999999985              78999999999997  45677999999999755545668999999999999999


Q ss_pred             eEEEEEc-cCCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         222 ESFMFDR-SLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       222 e~f~f~v-~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      |.|.|.+ ...++..  |.|+|||++.+ ++++||++.++++++..
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~  126 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS  126 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence            9999984 3444443  99999999988 89999999999998753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.85  E-value=2.1e-20  Score=139.63  Aligned_cols=106  Identities=30%  Similarity=0.433  Sum_probs=91.8

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      |+|++++.|.  .+.|.|+|++|+||+  + ..+.+||||++++.++.....+++|++++++.||+|||+|.|.++..++
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            8999999996  799999999999997  3 4577999999999754443457899999999999999999999887665


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ..  |.|+|||++.. ++++||++.++++++..+
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~  114 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLD  114 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEeccccccc
Confidence            43  99999999988 899999999999999553

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.85  E-value=3.5e-20  Score=140.47  Aligned_cols=115  Identities=19%  Similarity=0.274  Sum_probs=95.9

Q ss_pred             ccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCC
Q psy3954          47 NQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRD  117 (268)
Q Consensus        47 ~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d  117 (268)
                      +....+.|.|+|+|+ +|++|+  +..+.+| ||+     ..+||+++++++||.|||+|.|.+... ...|.|+|||.+
T Consensus         8 ~~~~~~~G~L~V~Vi-~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d   86 (136)
T cd08375           8 SQRASGIGRLMVVIV-EGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD   86 (136)
T ss_pred             ccCCCCcEEEEEEEE-EeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence            344566899999999 999998  6788999 999     789999999999999999999998765 678999999999


Q ss_pred             CCCCCCceeEEEEEecccccc-----ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHR-----ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                       ..++|++||++.+++.++..     ......|..+.     ....|+|++++.+.
T Consensus        87 -~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~~~g~i~l~~~~~  136 (136)
T cd08375          87 -FFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EVPTGEVVVKLDLQ  136 (136)
T ss_pred             -CCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cccceeEEEEEEeC
Confidence             78889999999999999875     22233555553     23379999998763

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.84  E-value=3e-20  Score=139.61  Aligned_cols=106  Identities=29%  Similarity=0.393  Sum_probs=92.8

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      .|+|.+++.|.  .+.|.|+|++|+||+  +..+.+||||++++..++....+++|++++++.||+|||+|.|.+...++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l   81 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL   81 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence            69999999999  599999999999997  45677999999999855444668899999999999999999999877666


Q ss_pred             ce--EEEEEEecCCC---CCeeeEEEEEeCCccCC
Q psy3954         234 IE--LVVSLHHDISG---LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       234 ~~--l~i~V~d~~~~---~~~~lG~~~l~l~~~~~  263 (268)
                      ..  |.|+|||++..   ++++||++.+++.++..
T Consensus        82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~  116 (127)
T cd04030          82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL  116 (127)
T ss_pred             cCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence            54  99999998863   78999999999999865

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.84  E-value=2.3e-20  Score=138.78  Aligned_cols=104  Identities=15%  Similarity=0.278  Sum_probs=91.6

Q ss_pred             EeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccC
Q psy3954          30 KHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFG   95 (268)
Q Consensus        30 ~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wn   95 (268)
                      ++.++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+           .++||+++++++||+||
T Consensus         3 i~~sL~Y~~~-------------~~~L~V~V~-~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfn   68 (124)
T cd08680           3 VQIGLRYDSG-------------DSSLVISVE-QLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN   68 (124)
T ss_pred             EEEEEEECCC-------------CCEEEEEEe-EecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccc
Confidence            5667788877             789999999 999998  6778899 999           27899999999999999


Q ss_pred             cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc-cCccceecC
Q psy3954          96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI-SNKEHWFPL  148 (268)
Q Consensus        96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L  148 (268)
                      |+|.|.++.+   ...|.|.|||.+ ..+++++||++.++|+++... .....|++|
T Consensus        69 E~F~f~v~~~~L~~~~L~~~V~~~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          69 EVFRVPISSTKLYQKTLQVDVCSVG-PDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             cEEEEECCHHHhhcCEEEEEEEeCC-CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999998876   789999999999 788999999999999999654 357789875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.84  E-value=3.1e-20  Score=138.26  Aligned_cols=109  Identities=32%  Similarity=0.578  Sum_probs=95.8

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCcee
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVL  126 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~i  126 (268)
                      |.|+|+ +|++|+  +..|.+| ||+      ...||+++++++||+|||.|.|.++.....|.|+|||.+ ..++|++|
T Consensus         2 l~v~vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~-~~~~d~~i   79 (121)
T cd04054           2 LYIRIV-EGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDED-TLSRDDVI   79 (121)
T ss_pred             EEEEEE-EeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECC-CCCCCCEE
Confidence            789999 999998  7788999 998      357999999999999999999999877789999999999 78899999


Q ss_pred             EEEEEeccccccc-cCccceecCcccCCCcccceEEEEEEE
Q psy3954         127 GKVTIQRSDLHRI-SNKEHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       127 G~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                      |++.++++++... ...+.|++|.+..+.....|+|++.+.
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            9999999888743 347899999987666667899998864

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=4.5e-20  Score=136.41  Aligned_cols=105  Identities=18%  Similarity=0.263  Sum_probs=94.4

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~  125 (268)
                      .|+|+|+ +|++|+  +..+.+| ||+     ...+|+++++|+||.|||+|.|.+... ...|.|+|||.+ ..++|++
T Consensus         1 ~~~V~v~-~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~-~~~~~~~   78 (116)
T cd08376           1 VVTIVLV-EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD-TGKKDEF   78 (116)
T ss_pred             CEEEEEE-EEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC-CCCCCCe
Confidence            3789999 999999  6678899 999     678999999999999999999998776 789999999999 7888999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ||++.++++++..+...+.|++|.+.      .|+|++.+.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~------~G~~~~~~~~  114 (116)
T cd08376          79 IGRCEIDLSALPREQTHSLELELEDG------EGSLLLLLTL  114 (116)
T ss_pred             EEEEEEeHHHCCCCCceEEEEEccCC------CcEEEEEEEe
Confidence            99999999999887888999999764      4999888776

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.84  E-value=3.3e-20  Score=140.47  Aligned_cols=110  Identities=19%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-----E-------EeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-----Q-------ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS  120 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~  120 (268)
                      |+|+|+ +|++|+  +..+.+| ||+     .       ..+|+++++|.||.|||+|.|.+......|.|+|||.+ ..
T Consensus         2 L~v~Vi-~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~~   79 (133)
T cd04033           2 LRVKVL-AGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN-RL   79 (133)
T ss_pred             EEEEEE-EeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC-CC
Confidence            789999 999999  6678899 998     2       46899999999999999999999876788999999999 78


Q ss_pred             CCCceeEEEEEeccccccccC------ccceecCcccCCCcccceEEEEEEEE
Q psy3954         121 KTDRVLGKVTIQRSDLHRISN------KEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~~~~~------~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ++|++||++.+++.++.....      ...|++|++........|+|++++.|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            889999999999999885432      45899999776556679999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=4.4e-20  Score=137.26  Aligned_cols=107  Identities=21%  Similarity=0.332  Sum_probs=92.1

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEE
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGK  128 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~  128 (268)
                      |.|+|+ +|++|+..  .+| ||+     +..||+++++++||+|||+|.|.+... ...|.|+|||++ .. ++++||+
T Consensus         2 L~V~Vi-~a~~L~~~--~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d-~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVV-KARGLPAN--SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD-KA-KDDFLGG   76 (121)
T ss_pred             EEEEEE-EecCCCcc--cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC-CC-cCceeee
Confidence            789999 99999944  789 999     788999999999999999999998764 789999999999 56 7889999


Q ss_pred             EEEecccccccc-----CccceecCcccCCCcccceEEEEEEEEc
Q psy3954         129 VTIQRSDLHRIS-----NKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       129 ~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +.++++++....     ....|++|.+... ....|+|++++.|.
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~  120 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG  120 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence            999999987432     2568999988764 55689999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=3.7e-20  Score=137.48  Aligned_cols=105  Identities=22%  Similarity=0.309  Sum_probs=92.0

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d  123 (268)
                      |.|+|+ +|++|+  +..+.+| ||+        ...||++++++.||+|||+|.|.+... ...|.|+|||++ .. +|
T Consensus         2 L~V~vi-~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d-~~-~~   78 (119)
T cd04036           2 LTVRVL-RATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED-YV-MD   78 (119)
T ss_pred             eEEEEE-EeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC-CC-CC
Confidence            789999 999999  6678899 998        357999999999999999999998776 568999999999 67 88


Q ss_pred             ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++||++.++++++..+.....|++|.+..     .|++.+++.++
T Consensus        79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~~-----~g~l~~~~~~~  118 (119)
T cd04036          79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQG-----KEELEVEFLLE  118 (119)
T ss_pred             cccEEEEEEHHHCCCCCcEEEEEECCCCC-----CceEEEEEEee
Confidence            99999999999999888889999997642     68888887653

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=2.6e-20  Score=137.45  Aligned_cols=96  Identities=21%  Similarity=0.315  Sum_probs=83.9

Q ss_pred             EEEEEEEcccCccc-cCCCCCC-ceE-E-----------EeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeC
Q psy3954          55 TLRIRIQYTADHIL-QPHYYED-LCT-Q-----------ILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDR  116 (268)
Q Consensus        55 ~L~V~v~~~a~~L~-~~~~~~d-yv~-~-----------~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~  116 (268)
                      .|+|+|+ +|++|+ ...|.+| ||+ .           +++|+++++|+||+|||+|.|.++.+    ...|.|.|||+
T Consensus         1 kL~V~Vi-~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVV-AANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEE-ECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999 999999 3358999 999 1           46899999999999999999998754    46799999999


Q ss_pred             CCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      | ..++|++||++.+|+.++..++....|++|.+..
T Consensus        80 d-~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~  114 (120)
T cd08395          80 C-FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI  114 (120)
T ss_pred             c-ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence            9 7888999999999999999888889999997654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.83  E-value=5.4e-20  Score=137.83  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=96.3

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFG   95 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wn   95 (268)
                      +|.++.+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ...||++++++.||.||
T Consensus         2 ~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn   67 (125)
T cd08386           2 LGRIQFSVSYDFQ-------------ESTLTLKIL-KAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN   67 (125)
T ss_pred             ccEEEEEEEECCC-------------CCEEEEEEE-EecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence            5889999999877             789999999 999998  6778899 998        46799999999999999


Q ss_pred             cEEEEEe-cCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          96 EEFQFDI-PRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        96 e~f~f~v-~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      |+|.|.+ +.+   ...|.|+|||++ ..+++++||++.++++++......+.|++|.|
T Consensus        68 e~f~f~~~~~~~l~~~~l~~~v~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          68 ETFLFEGFPYEKLQQRVLYLQVLDYD-RFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             eeEEEcccCHHHhCCCEEEEEEEeCC-CCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            9999984 332   467999999999 78889999999999999998888899999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=6.2e-20  Score=141.21  Aligned_cols=111  Identities=21%  Similarity=0.361  Sum_probs=94.9

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|+|+ +|++|+  +..|.+| ||+     +..+|+++.+ ++||+|||.|.|.++.. .+.|.|+|+|.+ ..++|++
T Consensus         2 L~V~Vi-~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~-~~~~dd~   79 (150)
T cd04019           2 LRVTVI-EAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV-GPNKDEP   79 (150)
T ss_pred             EEEEEE-EeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec-CCCCCCe
Confidence            789999 999998  7788999 999     7889999876 69999999999998765 579999999999 7778999


Q ss_pred             eEEEEEeccccccc----cCccceecCcccCC------CcccceEEEEEEEEc
Q psy3954         126 LGKVTIQRSDLHRI----SNKEHWFPLTPVTQ------DSEVQGKIQIGVLST  168 (268)
Q Consensus       126 iG~~~i~l~~l~~~----~~~~~w~~L~~~~~------~~~~~G~i~v~l~~~  168 (268)
                      ||++.++|.++..+    ...+.|++|.+...      .....|+|++.+.|.
T Consensus        80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999998643    34689999987642      234579999999886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=167.34  Aligned_cols=208  Identities=23%  Similarity=0.299  Sum_probs=171.9

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS  120 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~  120 (268)
                      ....|.++|.|. .|.+|.  ...+.+| |++      .++||-..-.++||+|||.....+....+.|.+++.|.. ..
T Consensus       707 ~~pIg~irv~v~-~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~-~s  784 (1227)
T COG5038         707 DTPIGAIRVSVR-KANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYE-ES  784 (1227)
T ss_pred             cCccceEEEEee-hhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecch-hc
Confidence            566899999999 999998  6788999 998      789999999999999999999888888888999999999 88


Q ss_pred             CCCceeEEEEEeccccccccCccc----------eecCcccCCCcccceEEEEEEEEc----------------------
Q psy3954         121 KTDRVLGKVTIQRSDLHRISNKEH----------WFPLTPVTQDSEVQGKIQIGVLST----------------------  168 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~~~~~~~~----------w~~L~~~~~~~~~~G~i~v~l~~~----------------------  168 (268)
                      +.|..+|++.++.+++....+...          --.|...  .....|.+.+.+.|.                      
T Consensus       785 gddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~--~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~  862 (1227)
T COG5038         785 GDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLT--GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKR  862 (1227)
T ss_pred             cccceeceeeeeeeeeeecCCCcceEEeecCcccccccccc--cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHH
Confidence            999999999999988775221110          0011110  123345555555553                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy3954         169 --------------------------------------------------------------------------------  168 (268)
Q Consensus       169 --------------------------------------------------------------------------------  168 (268)
                                                                                                      
T Consensus       863 ~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~  942 (1227)
T COG5038         863 KSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASH  942 (1227)
T ss_pred             HhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy3954         169 --------------------------------------------------------------------------------  168 (268)
Q Consensus       169 --------------------------------------------------------------------------------  168 (268)
                                                                                                      
T Consensus       943 ~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~ 1022 (1227)
T COG5038         943 PQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVS 1022 (1227)
T ss_pred             ceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEE
Confidence                                                                                            


Q ss_pred             ----------------CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         169 ----------------PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       169 ----------------~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                                      +|.|.|.+..|.||+  +.+|.+||||++.+.    ....++|+++++++||+|||.+..++..
T Consensus      1023 ~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln----~k~vyktkv~KktlNPvwNEe~~i~v~~ 1098 (1227)
T COG5038        1023 YTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN----EKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098 (1227)
T ss_pred             EeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec----ceecccccchhccCCCCccccceEeeec
Confidence                            888999999999998  678889999999997    2348999999999999999999999988


Q ss_pred             CCCceEEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954         231 GDPIELVVSLHHDISG-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       231 ~~~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~  265 (268)
                      ...+.+.+.|+|||.. +++.||.+.++|..+..+.
T Consensus      1099 r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038        1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred             cccceEEEEEeecccCCCccccccccccHhhcCcCC
Confidence            7777799999999999 9999999999999998753

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=8e-20  Score=134.82  Aligned_cols=95  Identities=22%  Similarity=0.262  Sum_probs=78.6

Q ss_pred             eEEEEEceecCCCCC-CCCCCCEEEEEEEe--cCCcceeeeceeccCCCCCccceEEEEEccCC-CCce--EEEEEEecC
Q psy3954         171 SLMVNVNEASGLTQV-NGQCDPTAMVTVHY--THNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-DPIE--LVVSLHHDI  244 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~--~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-~~~~--l~i~V~d~~  244 (268)
                      +|+|.|++|++|+.. .|.+||||+|++..  .+.+.++++|+++.+++||+|||+|.|.++.. .+..  |.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            489999999999732 47899999999962  12334567999999999999999999999754 3333  999999998


Q ss_pred             CC-CCeeeEEEEEeCCccCCCC
Q psy3954         245 SG-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       245 ~~-~~~~lG~~~l~l~~~~~~~  265 (268)
                      .. ++++||++.+|++++..+.
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~  102 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAG  102 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCC
Confidence            77 7999999999999998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.83  E-value=9.8e-20  Score=136.78  Aligned_cols=108  Identities=21%  Similarity=0.320  Sum_probs=95.8

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      +|.+..+++|..+             .+.|.|+|+ +|+||+  +..+.+| ||+          ..+||++++++.||+
T Consensus         2 ~G~l~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~   67 (127)
T cd04030           2 LGRIQLTIRYSSQ-------------RQKLIVTVH-KCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV   67 (127)
T ss_pred             CeEEEEEEEEeCC-------------CCEEEEEEE-EEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence            5888899999877             789999999 999999  6678899 998          367999999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCC--CCCceeEEEEEeccccccccCccceecCc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTS--KTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~--~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |||+|.|.++..   ...|.+.|||.+ ..  +++++||++.+++.++..+.....|++|+
T Consensus        68 wne~f~f~i~~~~l~~~~l~i~v~~~~-~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          68 FDETFEFPVSLEELKRRTLDVAVKNSK-SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ECeEEEEecCHHHhcCCEEEEEEEECC-cccCCCCceEEEEEEecccccccCCccceEECc
Confidence            999999998765   578999999999 54  68999999999999998777888999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.83  E-value=6.7e-20  Score=135.74  Aligned_cols=93  Identities=17%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d  117 (268)
                      .+.|.|+|+ +|+||+  + .+.+| ||+          .+.||+++++++||+|||+|.|.++.+  ...|.|.|||.+
T Consensus        11 ~~~L~V~Vi-~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          11 NRKLTLHVL-EAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             CCEEEEEEE-EEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            578999999 999998  5 78899 999          366899999999999999999998775  467999999999


Q ss_pred             CCCC-CCceeEEEEEeccccccccCccceecC
Q psy3954         118 RTSK-TDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus       118 ~~~~-~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                       ... ++++||.+.+++.++..+...+.||.|
T Consensus        89 -~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 -SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             -CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence             554 578999999999999877778899975

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=2.2e-19  Score=133.26  Aligned_cols=110  Identities=23%  Similarity=0.390  Sum_probs=96.1

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|.|+|+ +|++|+  +..+.+| ||+     ...+|++++++.||.|||+|.|.+......|.|+|||.+ ..+++++
T Consensus         1 g~l~v~v~-~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~-~~~~~~~   78 (119)
T cd08377           1 GFLQVKVI-RASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDED-KDKKPEF   78 (119)
T ss_pred             CEEEEEEE-eeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECC-CCCCCce
Confidence            57899999 999999  6678899 998     567999999999999999999998776789999999999 7788999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ||++.+++.++..+  ...|++|.+........|+|.+++.+
T Consensus        79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            99999999998643  46899998766555679999999875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.82  E-value=1.2e-19  Score=136.02  Aligned_cols=104  Identities=27%  Similarity=0.389  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-cCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~~~~  232 (268)
                      .|+|++++.|.  .+.|.|.|++|+||+  +..+.+||||++.+..+  ...+.+|++++++.||.|||+|.|.+ +.+.
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~   79 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKHKLETKVKRKNLNPHWNETFLFEGFPYEK   79 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence            59999999998  889999999999997  45778999999999632  23468999999999999999999974 3333


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +..  |.++|||++.. ++++||++.++++++..
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~  113 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL  113 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence            333  99999999988 89999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=1.3e-19  Score=136.36  Aligned_cols=112  Identities=19%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             eEEEEEEEcccCccc--cC--CCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC-CCcEEEEEEEeCCCCCCC
Q psy3954          54 GTLRIRIQYTADHIL--QP--HYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR-RFRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~--~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~-~~~~l~~~v~d~d~~~~~  122 (268)
                      |.|+|+|+ +|++|+  +.  .+.+| ||+     ...+|+++++++||.|||+|.|.+.. ..+.|.|+|||.+ ..++
T Consensus         1 g~l~v~v~-~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~-~~~~   78 (128)
T cd04024           1 GVLRVHVV-EAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD-RFAG   78 (128)
T ss_pred             CEEEEEEE-EeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC-CCCC
Confidence            57999999 999998  66  78899 998     77899999999999999999999887 3789999999999 7888


Q ss_pred             CceeEEEEEecccccc---ccCccceecCcccCCC--cccceEEEEEEEE
Q psy3954         123 DRVLGKVTIQRSDLHR---ISNKEHWFPLTPVTQD--SEVQGKIQIGVLS  167 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~--~~~~G~i~v~l~~  167 (268)
                      +++||++.++++++..   ......|++|.+....  ....|+|++++.+
T Consensus        79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999999873   2346789999876432  4468999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=1.6e-19  Score=134.82  Aligned_cols=109  Identities=25%  Similarity=0.402  Sum_probs=94.0

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~  125 (268)
                      +|+|+|+ +|++|+  +..+.+| ||+     ...+|+++++++||.|||+|.|.+... ...|.|+|||++ ..+++++
T Consensus         1 ~L~v~vi-~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~-~~~~~~~   78 (123)
T cd04025           1 RLRCHVL-EARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD-LVSKNDF   78 (123)
T ss_pred             CEEEEEE-EeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC-CCCCCcE
Confidence            4899999 999998  6678899 998     678999999999999999999998876 688999999999 7888999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCC----cccceEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQD----SEVQGKIQIGV  165 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~----~~~~G~i~v~l  165 (268)
                      ||++.++++++......+.|+.|.+....    ....|.|.+.+
T Consensus        79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            99999999999876677899999874422    34578888765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.82  E-value=5.4e-20  Score=139.11  Aligned_cols=107  Identities=16%  Similarity=0.201  Sum_probs=92.7

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      +|.+..++.|...             .+.|.|+|+ +|+||+  +..|.+| ||+          .+.||+++++++||+
T Consensus         1 ~G~i~~sL~Y~~~-------------~~~L~V~Vi-~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~   66 (136)
T cd08406           1 VGEILLSLSYLPT-------------AERLTVVVV-KARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI   66 (136)
T ss_pred             CcEEEEEEEEcCC-------------CCEEEEEEE-EeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence            4889999999877             789999999 999999  7788999 999          366899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      |||+|.|.++..   ...|.|.|||+| ..+++++||++.++...  .+.+.++|..+..
T Consensus        67 ~nE~f~F~v~~~~l~~~~l~~~V~~~d-~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          67 FNEAMIFSVPAIVLQDLSLRVTVAEST-EDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             eceeEEEECCHHHhCCcEEEEEEEeCC-CCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence            999999998875   688999999999 78899999999997653  4566788877643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.82  E-value=2.1e-19  Score=134.56  Aligned_cols=107  Identities=20%  Similarity=0.338  Sum_probs=91.3

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      .|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          .++||+++++++||+
T Consensus         2 ~G~l~~~l~~~~~-------------~~~L~V~vi-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   67 (125)
T cd04031           2 TGRIQIQLWYDKV-------------TSQLIVTVL-QARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE   67 (125)
T ss_pred             cEEEEEEEEEeCC-------------CCEEEEEEE-EecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence            4788888888876             789999999 999998  6778899 998          367899999999999


Q ss_pred             cCcEEEEEecC----CCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          94 FGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        94 wne~f~f~v~~----~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |||+|.|.+..    ....|.|+|||++ ..+++++||++.++|++.. ......|++|+
T Consensus        68 wne~f~f~~~~~~~l~~~~l~~~V~d~~-~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          68 WNQTFEYSNVRRETLKERTLEVTVWDYD-RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             cccEEEEcccCHHHhCCCEEEEEEEeCC-CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            99999998544    2578999999999 7888999999999999833 34557899884

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=1.5e-19  Score=134.95  Aligned_cols=106  Identities=19%  Similarity=0.370  Sum_probs=93.2

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c-CCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q-PHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      |.++.+++|..+             .+.|.|+|+ +|+||+  + ..+.+| ||+          ...+|++++++.||+
T Consensus         1 G~i~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (123)
T cd08521           1 GEIEFSLSYNYK-------------TGSLEVHIK-ECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV   66 (123)
T ss_pred             CeEEEEEEEeCC-------------CCEEEEEEE-EecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence            567788888766             789999999 999999  5 578899 998          357899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      |||+|.|.++..   ...|.|+|||.+ ..+++++||++.++++++......+.|++|
T Consensus        67 wne~f~f~i~~~~l~~~~l~i~v~d~~-~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          67 FNETLKYHISKSQLETRTLQLSVWHHD-RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEeCC-CCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999998774   578999999999 788899999999999999877778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.82  E-value=1.2e-19  Score=138.99  Aligned_cols=109  Identities=20%  Similarity=0.348  Sum_probs=89.8

Q ss_pred             EEEEEEEcccCccccCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEec-------------CC---Cc
Q psy3954          55 TLRIRIQYTADHILQPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIP-------------RR---FR  107 (268)
Q Consensus        55 ~L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~-------------~~---~~  107 (268)
                      .|.|+|+ +|++|+..+|.+| ||+          ...||+++++|+||+|||+|.|.+.             .+   ..
T Consensus         1 kL~V~Vi-~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVI-ECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEE-eCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            3899999 9999996678899 998          2568999999999999999999984             11   36


Q ss_pred             EEEEEEEeCCCCCCCCceeEEEEEeccccccc-cCccceecCcccCCCc----------ccceEEEEEE
Q psy3954         108 HLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI-SNKEHWFPLTPVTQDS----------EVQGKIQIGV  165 (268)
Q Consensus       108 ~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~----------~~~G~i~v~l  165 (268)
                      .|.|.|||++ ..++|++||++.|++..+... .....|++|.+.+...          ...|.|.+.+
T Consensus        80 ~L~i~V~d~~-~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          80 ELRVDLWHAS-MGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEcCC-CCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            7999999999 778899999999999999876 5678999998765332          2356666654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG1030|consensus

Probab=99.82  E-value=7.3e-20  Score=138.57  Aligned_cols=85  Identities=27%  Similarity=0.383  Sum_probs=80.5

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~  124 (268)
                      .|.|+|+|. +|.+|.  |..+++| ||.     ++.||+++++++||+|||+|.|.+.+....|.++|||+| .+++||
T Consensus         5 vGLL~v~v~-~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D-~fs~dD   82 (168)
T KOG1030|consen    5 VGLLRVRVK-RGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKD-TFSSDD   82 (168)
T ss_pred             ceEEEEEEE-eecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCC-CCCccc
Confidence            689999999 999999  7778999 999     899999999999999999999999999999999999999 899999


Q ss_pred             eeEEEEEeccccccc
Q psy3954         125 VLGKVTIQRSDLHRI  139 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~  139 (268)
                      +||.+.|++..+...
T Consensus        83 ~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   83 FMGEATIPLKPLLEA   97 (168)
T ss_pred             ccceeeeccHHHHHH
Confidence            999999999988744

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.82  E-value=1.7e-19  Score=134.73  Aligned_cols=108  Identities=22%  Similarity=0.303  Sum_probs=95.7

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c-CCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q-PHYYED-LCT--------QILNSPSVNPVTSPFFG   95 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~--------~~~~T~~~~~t~nP~wn   95 (268)
                      |.+..+++|...             .+.|.|+|+ +|++|+  + ..+.+| ||+        ...+|+++++++||+||
T Consensus         1 G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn   66 (123)
T cd08390           1 GRLWFSVQYDLE-------------EEQLTVSLI-KARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD   66 (123)
T ss_pred             CEEEEEEEECCC-------------CCEEEEEEE-EecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence            577888888877             789999999 999999  5 577889 998        35789999999999999


Q ss_pred             cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      |.|.|.++..   ...|.|+|||.+ ..+++++||++.++|.++........|++|.|
T Consensus        67 e~f~f~i~~~~l~~~~l~i~v~d~~-~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          67 ETFVFQVSFKELQRRTLRLSVYDVD-RFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             eEEEEEcCHHHhcccEEEEEEEECC-cCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9999998775   468999999999 67789999999999999998888889999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.82  E-value=2e-19  Score=134.31  Aligned_cols=104  Identities=26%  Similarity=0.377  Sum_probs=90.4

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      |+|.+++.|.  .+.|.|.|++|+||+  + ..+.+||||++++.+..  ....+|++++++.||+|||.|.|.++...+
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P~wne~f~f~i~~~~l   78 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNPNFDETFVFQVSFKEL   78 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence            8999999999  789999999999997  3 45679999999997433  345789999999999999999999877665


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ..  |.|+|||++.. ++++||++.++|+++...
T Consensus        79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~  112 (123)
T cd08390          79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV  112 (123)
T ss_pred             cccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence            43  99999999888 899999999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.81  E-value=3.4e-19  Score=132.65  Aligned_cols=106  Identities=21%  Similarity=0.404  Sum_probs=92.3

Q ss_pred             eEEEEEEEcccCccc--cC------CCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCC
Q psy3954          54 GTLRIRIQYTADHIL--QP------HYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDR  118 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~------~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~  118 (268)
                      |.|.|+|+ +|++|+  +.      .+.+| ||+     ..++|++++++.||+|||+|.|.+... .+.|.|+|||.+ 
T Consensus         1 g~l~v~v~-~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~-   78 (121)
T cd08391           1 GVLRIHVI-EAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED-   78 (121)
T ss_pred             CeEEEEEE-EccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC-
Confidence            57999999 999999  32      36789 999     789999999999999999999998764 789999999999 


Q ss_pred             CCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         119 TSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       119 ~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      .. +|++||++.++++++......+.|++|.+.     ..|+|++++.|
T Consensus        79 ~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~~~~~~~~  121 (121)
T cd08391          79 PD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV-----KSGRLHLKLEW  121 (121)
T ss_pred             CC-CCCcEEEEEEEHHHhcccCccceEEECcCC-----CCceEEEEEeC
Confidence            66 889999999999999877778899999764     36999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.81  E-value=1.4e-19  Score=137.11  Aligned_cols=110  Identities=28%  Similarity=0.369  Sum_probs=93.6

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      |+|++++.|.  .+.|.|.|++|+||+.  ..+.+||||++++...+....+++|++++++.||.|||+|.|.++...+.
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            8999999997  6899999999999974  46779999999998554445678999999999999999999998876643


Q ss_pred             e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      .  |.|+|||.+.. ++++||++.+++++...+..+|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W  117 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHW  117 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHH
Confidence            3  99999999987 8999999999999944454444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.81  E-value=5.1e-19  Score=137.47  Aligned_cols=113  Identities=21%  Similarity=0.348  Sum_probs=95.9

Q ss_pred             CeEEEEEEEcccCccc--c------------------------------CCCCCC-ceE------EEeeecccCCCCCCc
Q psy3954          53 LGTLRIRIQYTADHIL--Q------------------------------PHYYED-LCT------QILNSPSVNPVTSPF   93 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~------------------------------~~~~~d-yv~------~~~~T~~~~~t~nP~   93 (268)
                      .|.|.|+|+ +|++|+  |                              ..|.+| ||+      ...||++++++.||+
T Consensus         6 hG~L~v~I~-eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~   84 (158)
T cd04015           6 HGTLDVTIY-EADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV   84 (158)
T ss_pred             eeeeEEEEE-EeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence            489999999 999998  4                              246689 999      457999999999999


Q ss_pred             cCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC-cccceEEEEEEEEc
Q psy3954          94 FGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD-SEVQGKIQIGVLST  168 (268)
Q Consensus        94 wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~v~l~~~  168 (268)
                      |||+|.|.+....+.|.|.|+|.| ..+ +++||++.++++++..+...+.|++|.+.... ....|+|++++.|.
T Consensus        85 WnE~F~~~~~~~~~~l~~~V~d~d-~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          85 WNESFHIYCAHYASHVEFTVKDND-VVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             cceEEEEEccCCCCEEEEEEEeCC-CcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            999999998877788999999999 665 57999999999999887888999999764322 23468999999883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.81  E-value=4e-19  Score=134.47  Aligned_cols=106  Identities=29%  Similarity=0.349  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC--cceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN--KSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      .|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++++.....  ...+++|+++++++||+|||.|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            59999999999  489999999999997  4567899999999973332  24578999999999999999999998753


Q ss_pred             CC--c--eEEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         232 DP--I--ELVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       232 ~~--~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ..  .  .|.|+|||++.. ++++||++.++|+++..
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            22  2  399999999988 79999999999998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.81  E-value=1.2e-19  Score=137.25  Aligned_cols=104  Identities=13%  Similarity=0.219  Sum_probs=90.5

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c--CCCCCC-ceE----------EEeeecccCCCCCC
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q--PHYYED-LCT----------QILNSPSVNPVTSP   92 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~--~~~~~d-yv~----------~~~~T~~~~~t~nP   92 (268)
                      |.+..++.|...             .+.|.|+|+ +|+||+  +  ..+.+| ||+          .+.||+++++++||
T Consensus         2 Gel~~sL~Y~~~-------------~~~L~V~V~-karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nP   67 (138)
T cd08407           2 GEVLLSISYLPA-------------ANRLLVVVI-KAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINP   67 (138)
T ss_pred             CEEEEEEEEeCC-------------CCeEEEEEE-EecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCC
Confidence            788899999877             789999999 999998  4  235589 999          46799999999999


Q ss_pred             ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      +|||.|.|.++.+   ...|.|+|||.| .++++++||++.+++..  .+.+.++|..+
T Consensus        68 vfNE~f~F~v~~~~L~~~~L~~~V~d~d-~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          68 VWNEMIMFELPSELLAASSVELEVLNQD-SPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             ccccEEEEECCHHHhCccEEEEEEEeCC-CCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            9999999999886   678999999999 78999999999999874  45567788776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.81  E-value=5.6e-19  Score=132.59  Aligned_cols=107  Identities=21%  Similarity=0.422  Sum_probs=93.0

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC------
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS------  120 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~------  120 (268)
                      .|+|+|+ +|++|+  +..+.+| ||+     ...+|+++++++||.|||+|.|.+......|.|+|||+| ..      
T Consensus         2 ~L~V~vi-~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d-~~~~~~~~   79 (127)
T cd04027           2 KISITVV-CAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED-DDIKSRLK   79 (127)
T ss_pred             eEEEEEE-ECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECC-CCcccccc
Confidence            6899999 999999  7778899 998     678999999999999999999998766678999999998 32      


Q ss_pred             -----CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEE
Q psy3954         121 -----KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGV  165 (268)
Q Consensus       121 -----~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l  165 (268)
                           +.+++||++.+++.++.  ...+.|+.|.+.+.....+|+|++++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                 46899999999999875  44679999998876677899999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.81  E-value=2.8e-19  Score=136.87  Aligned_cols=94  Identities=46%  Similarity=0.698  Sum_probs=80.8

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc-------------CCCCce--
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS-------------LGDPIE--  235 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~-------------~~~~~~--  235 (268)
                      +|.|.|++|+||+..+|.+||||+|++.....+..+++|+++++++||+|||+|.|.+.             ..+++.  
T Consensus         1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T cd04010           1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE   80 (148)
T ss_pred             CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence            48999999999987778899999999985444446789999999999999999999984             234443  


Q ss_pred             EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         236 LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      |.|.|||++.. ++++||++.|++.++..+
T Consensus        81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             EEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            99999999988 999999999999999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.80  E-value=7.3e-19  Score=137.08  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=98.0

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..++.|..+.. ..+...+....+.|.|+|+ +|+||+  +..+.+| ||+          .++||+++++++||.|
T Consensus         2 G~l~~~l~y~~~~~-~~~~~~~~~~~g~L~V~Vi-~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W   79 (162)
T cd04020           2 GELKVALKYVPPES-EGALKSKKPSTGELHVWVK-EAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW   79 (162)
T ss_pred             ceEEEEEEecCccc-cccccccCCCCceEEEEEE-eeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence            67888888876532 2222334556789999999 999999  6678899 998          4689999999999999


Q ss_pred             CcEEEEEec-CC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          95 GEEFQFDIP-RR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        95 ne~f~f~v~-~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||+|.|.+. ..   ...|.|+|||++ .+++|++||++.+++.++......+.|+.+..
T Consensus        80 nE~f~f~~~~~~~l~~~~L~i~V~d~d-~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          80 NHTFVYDGVSPEDLSQACLELTVWDHD-KLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCEEEEecCCHHHhCCCEEEEEEEeCC-CCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999999843 32   468999999999 78889999999999999987667788888854

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>KOG0696|consensus

Probab=99.80  E-value=5.5e-20  Score=157.04  Aligned_cols=109  Identities=24%  Similarity=0.343  Sum_probs=101.7

Q ss_pred             cccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      .+.+|+|.+.+......|.|.|.+|+||.  |.+|.+||||++.|.+++....++||++++.++||+|||+|+|.+...+
T Consensus       165 tE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D  244 (683)
T KOG0696|consen  165 TERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD  244 (683)
T ss_pred             hhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence            55689999999999999999999999994  8899999999999998777778899999999999999999999998888


Q ss_pred             Cce-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIE-LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .+. |.|+|||||+. +++++|..+++++++..
T Consensus       245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K  277 (683)
T KOG0696|consen  245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK  277 (683)
T ss_pred             ccceeEEEEecccccccccccceecccHHHHhh
Confidence            877 99999999999 99999999999999876

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.80  E-value=8.3e-19  Score=130.98  Aligned_cols=110  Identities=25%  Similarity=0.344  Sum_probs=92.3

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGD  232 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~  232 (268)
                      .|+|.+++.|.  .+.|.|+|++|++|+  +..+.+||||++.+..+.....+.+|++++++.||.|||.|.|. +...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            48999999997  679999999999997  44577999999999755444567899999999999999999996 44344


Q ss_pred             Cc--eEEEEEEecCCCCCeeeEEEEEeCCccCCCCCC
Q psy3954         233 PI--ELVVSLHHDISGLNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       233 ~~--~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      +.  .|.|+|||++..++++||++.++++++..+..+
T Consensus        81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~  117 (123)
T cd04035          81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTK  117 (123)
T ss_pred             hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcce
Confidence            43  399999998876889999999999999876543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.79  E-value=5e-19  Score=128.72  Aligned_cols=90  Identities=12%  Similarity=0.230  Sum_probs=77.3

Q ss_pred             CeEEEEEceecCCCCC-----C-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEe
Q psy3954         170 TSLMVNVNEASGLTQV-----N-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHH  242 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~-----~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d  242 (268)
                      |.|.|+|++|++|+..     . +.+||||++.+.     ..++||+++++++||+|||.|.|.+.....+. |.|+|||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D   75 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLD   75 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEE
Confidence            5789999999999742     1 348999999985     45679999999999999999999987655444 9999999


Q ss_pred             cCCC-CCeeeEEEEEeCCccCCC
Q psy3954         243 DISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       243 ~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++.. ++++||++.++|+++..+
T Consensus        76 ~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          76 KDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             CCCCCCCcceEEEEEEHHHHHhh
Confidence            9988 999999999999998654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.79  E-value=4.5e-18  Score=160.06  Aligned_cols=208  Identities=20%  Similarity=0.283  Sum_probs=159.8

Q ss_pred             ccCCCeEEEEEEEcccCccc--c--CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCC
Q psy3954          49 IIQDLGTLRIRIQYTADHIL--Q--PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRD  117 (268)
Q Consensus        49 ~~~~~~~L~V~v~~~a~~L~--~--~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d  117 (268)
                      ...+.|.|.|+|. +|++|.  +  .++..| |++      ...||+++++++||+|||+|...+..-++.|.++|||.+
T Consensus       431 s~~aIGVv~vkI~-sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n  509 (1227)
T COG5038         431 SGTAIGVVEVKIK-SAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFN  509 (1227)
T ss_pred             cCCeeEEEEEEEe-eccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecc
Confidence            4566899999999 999999  4  478899 998      567999999999999999999998887999999999988


Q ss_pred             CCCCCCceeEEEEEeccccccccCcc--------------------ceecCcccCCC--------cc-cceEEEEEEEEc
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKE--------------------HWFPLTPVTQD--------SE-VQGKIQIGVLST  168 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~--------------------~w~~L~~~~~~--------~~-~~G~i~v~l~~~  168 (268)
                       ...+|+.+|.+.++|..+.......                    +||+.-..+..        .+ ..|-+.+.+.-.
T Consensus       510 -~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~  588 (1227)
T COG5038         510 -SFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREV  588 (1227)
T ss_pred             -ccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeecc
Confidence             6888999999999998776432211                    23322111000        00 113233222210


Q ss_pred             --------------------------------------------------------------------------------
Q psy3954         169 --------------------------------------------------------------------------------  168 (268)
Q Consensus       169 --------------------------------------------------------------------------------  168 (268)
                                                                                                      
T Consensus       589 ~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~  668 (1227)
T COG5038         589 KALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDR  668 (1227)
T ss_pred             ccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhc
Confidence                                                                                            


Q ss_pred             -----------------------------------------CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcce
Q psy3954         169 -----------------------------------------PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSD  205 (268)
Q Consensus       169 -----------------------------------------~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~  205 (268)
                                                               .|.++|.|..|.+|.+  ..+.+|||+++.+.    ...
T Consensus       669 t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~  744 (1227)
T COG5038         669 TLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLV  744 (1227)
T ss_pred             cccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec----cee
Confidence                                                     6789999999999973  46679999999987    367


Q ss_pred             eeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         206 VQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       206 ~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +++|-....++||.||+....++..+ .+.|.+.++|.... .|+.||++.+..++...
T Consensus       745 k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~  802 (1227)
T COG5038         745 KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSK  802 (1227)
T ss_pred             EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeee
Confidence            89999999999999999887776542 33488889998877 99999999999887644

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.79  E-value=1.3e-18  Score=129.94  Aligned_cols=107  Identities=18%  Similarity=0.318  Sum_probs=90.6

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC--Cc
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT--DR  124 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~--d~  124 (268)
                      |+|+|+ +|++|+  +..+.+| ||+      +.+||+++++++||.|||+|.|.++. .+.|.|+|||++ ..++  |+
T Consensus         2 l~v~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~-~~~~~~d~   78 (123)
T cd08382           2 VRLTVL-CADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQK-KFKKKDQG   78 (123)
T ss_pred             eEEEEE-EecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECC-CCCCCCCc
Confidence            789999 999998  6778899 998      57899999999999999999999977 589999999999 6654  58


Q ss_pred             eeEEEEEecccccccc-CccceecCcccCC--CcccceEEEEEE
Q psy3954         125 VLGKVTIQRSDLHRIS-NKEHWFPLTPVTQ--DSEVQGKIQIGV  165 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~--~~~~~G~i~v~l  165 (268)
                      +||++.+++.++.... ....|++|.+...  .....|+|.+++
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            9999999999987544 3478999976554  344589998875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.79  E-value=4.5e-19  Score=134.69  Aligned_cols=107  Identities=21%  Similarity=0.316  Sum_probs=93.9

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      +|.++.+++|...             .+.|.|+|+ +|+||+  + .+.+| ||+          .+++|+++++++||+
T Consensus         1 ~G~i~~sl~y~~~-------------~~~L~V~V~-~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~   65 (137)
T cd08409           1 LGDIQISLTYNPT-------------LNRLTVVVL-RARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPS   65 (137)
T ss_pred             CcEEEEEEEECCC-------------CCeEEEEEE-EecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence            5889999999977             789999999 999999  6 77799 999          366899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |||+|.|.++.+   ...|.|+|||.+ ..+++++||++.++......+.+.++|..+.
T Consensus        66 fnE~F~f~i~~~~l~~~~L~~~V~~~~-~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          66 FNESFSFKVTSRQLDTASLSLSVMQSG-GVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             ccceEEEECCHHHhCccEEEEEEEeCC-CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            999999999765   578999999999 7889999999999977666677788898764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.79  E-value=1.7e-18  Score=130.78  Aligned_cols=106  Identities=27%  Similarity=0.369  Sum_probs=92.9

Q ss_pred             ceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954         158 QGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE  235 (268)
Q Consensus       158 ~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~  235 (268)
                      +|+|.+++.|..+.|.|+|++|++|+  +..+.+||||++.+...+.....++|++++++.||.|||+|.|.+...+...
T Consensus         1 ~g~~~~~~~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~   80 (131)
T cd04026           1 RGRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR   80 (131)
T ss_pred             CcEEEEEEEECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence            49999999999999999999999997  4567799999999975444456789999999999999999999987654444


Q ss_pred             -EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         236 -LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       236 -l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                       |.|+|||++.. ++++||++.++++++..
T Consensus        81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~  110 (131)
T cd04026          81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIK  110 (131)
T ss_pred             EEEEEEEECCCCCCcceeEEEEEeHHHhCc
Confidence             99999999887 89999999999998864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.79  E-value=2.3e-18  Score=130.23  Aligned_cols=106  Identities=25%  Similarity=0.377  Sum_probs=91.8

Q ss_pred             CeEEEEEEEcccCccc--cC----------CCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEE
Q psy3954          53 LGTLRIRIQYTADHIL--QP----------HYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYA  113 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~----------~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v  113 (268)
                      .|.|+|+|+ +|++|+  +.          .+.+| ||+      ...+|+++++++||.|||+|.|.++. ...|.|.|
T Consensus         3 ~g~l~V~v~-~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v   80 (132)
T cd04014           3 TGTLKIKIC-EAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV   80 (132)
T ss_pred             ceEEEEEEE-EecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence            478999999 999998  43          25789 999      45799999999999999999999974 48999999


Q ss_pred             EeCCCCCCCCceeEEEEEecccccc--ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         114 YDRDRTSKTDRVLGKVTIQRSDLHR--ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       114 ~d~d~~~~~d~~iG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ||.+ ..+++++||++.++|+++..  ....+.|++|.+       .|+|++++.|.
T Consensus        81 ~d~~-~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~  129 (132)
T cd04014          81 FHDA-AIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELK  129 (132)
T ss_pred             EeCC-CCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEe
Confidence            9999 78889999999999999886  456789999973       69999998874

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.79  E-value=1.8e-18  Score=131.43  Aligned_cols=116  Identities=19%  Similarity=0.322  Sum_probs=96.0

Q ss_pred             ccCCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCC
Q psy3954          49 IIQDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSK  121 (268)
Q Consensus        49 ~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~  121 (268)
                      ..+....|.|.|+ +|++||.   ..+ ||.      ..+||+++.++.||.|+|+|.|........|.|.|++.+...+
T Consensus         6 ~~R~~~sL~v~V~-EAk~Lp~---~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~   81 (146)
T cd04013           6 SRRTENSLKLWII-EAKGLPP---KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK   81 (146)
T ss_pred             ceEEEEEEEEEEE-EccCCCC---cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence            3455688999999 9999982   236 998      5679999999999999999999866666889999987652232


Q ss_pred             ---CCceeEEEEEeccccccccCccceecCcccCCCc--------ccceEEEEEEEEc
Q psy3954         122 ---TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDS--------EVQGKIQIGVLST  168 (268)
Q Consensus       122 ---~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~--------~~~G~i~v~l~~~  168 (268)
                         ++.+||.+.||++++..+...+.||+|.+.+...        ...+.|++++.|.
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~  139 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ  139 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence               5789999999999999888899999998777553        4457999999886

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.79  E-value=6.7e-19  Score=129.03  Aligned_cols=96  Identities=20%  Similarity=0.309  Sum_probs=80.9

Q ss_pred             CeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC---ceEEEEEEec
Q psy3954         170 TSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP---IELVVSLHHD  243 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~---~~l~i~V~d~  243 (268)
                      |.|.|+|++|++|+  +.. |.+||||++++...+  ....+|+++++++||+|||.|.|.+...++   ..|.|+|||+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~   78 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS   78 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence            67999999999997  455 789999999986322  346899999999999999999998866543   2399999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      +.. ++++||++.+++.++...+.|
T Consensus        79 d~~~~dd~lG~~~i~l~~l~~~~~~  103 (111)
T cd04041          79 DRFTADDRLGRVEIDLKELIEDRNW  103 (111)
T ss_pred             CCCCCCCcceEEEEEHHHHhcCCCC
Confidence            998 899999999999999766555

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.79  E-value=5.2e-18  Score=127.14  Aligned_cols=110  Identities=19%  Similarity=0.243  Sum_probs=92.1

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~  124 (268)
                      ...|+|+|+ +|++|+  +..|.+| ||+     +..||++++++.||+|||.|.|.+......|.|+|||++ ..+ |+
T Consensus         2 ~~~~~V~v~-~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~-~~~-d~   78 (126)
T cd04046           2 QVVTQVHVH-SAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSN-LLC-DE   78 (126)
T ss_pred             cEEEEEEEE-eCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECC-CCC-CC
Confidence            368999999 999998  6788999 999     788999999999999999999998877889999999999 564 88


Q ss_pred             eeEEEEEeccccccccCccceecCccc--CCCcccceEEEEEEEE
Q psy3954         125 VLGKVTIQRSDLHRISNKEHWFPLTPV--TQDSEVQGKIQIGVLS  167 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~~G~i~v~l~~  167 (268)
                      +||++.+++.++.  .....|++|...  .......|+|.+++.+
T Consensus        79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~  121 (126)
T cd04046          79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS  121 (126)
T ss_pred             ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence            9999999998754  344567777532  2445678999988765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.78  E-value=3.3e-18  Score=126.47  Aligned_cols=89  Identities=13%  Similarity=0.171  Sum_probs=76.0

Q ss_pred             CeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      |.|.|+|++|++|++. .|.+||||++.+.     ..+.+|++..+ +.||+|||+|.|.+... ...|.|+|||+|.+ 
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~   75 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT   75 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence            7899999999999754 4889999999997     56779999875 79999999999998653 34599999999999 


Q ss_pred             CCeeeEEEEEeCC-ccCCC
Q psy3954         247 LNVFLGEVHIPLN-NKETS  264 (268)
Q Consensus       247 ~~~~lG~~~l~l~-~~~~~  264 (268)
                      +|++||++.+++. .+..+
T Consensus        76 ~dd~iG~~~i~l~~~~~~g   94 (121)
T cd04016          76 MDERIAWTHITIPESVFNG   94 (121)
T ss_pred             CCceEEEEEEECchhccCC
Confidence            8999999999996 45443

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.78  E-value=1.1e-18  Score=132.53  Aligned_cols=108  Identities=20%  Similarity=0.302  Sum_probs=93.0

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      +|.++.+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ...+|+++++++||.
T Consensus         1 ~G~l~~~l~y~~~-------------~~~l~V~Vi-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   66 (136)
T cd08402           1 LGDICFSLRYVPT-------------AGKLTVVIL-EAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY   66 (136)
T ss_pred             CcEEEEEeEEcCC-------------CCeEEEEEE-EeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence            5888999999877             789999999 999999  7788999 998          256799999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      |||+|.|.++..   ...|.|+|||.+ .+++|++||++.+++...  +.+..+|+++...
T Consensus        67 wne~f~f~i~~~~l~~~~l~~~v~d~~-~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          67 YNESFSFEVPFEQIQKVHLIVTVLDYD-RIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             ccceEEEECCHHHhCCCEEEEEEEeCC-CCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            999999998765   358999999999 788999999999999754  4567889887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.78  E-value=4.8e-18  Score=127.40  Aligned_cols=105  Identities=20%  Similarity=0.363  Sum_probs=90.1

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCC
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~  122 (268)
                      .|+|+|+ +|++|+  +..+.+| ||+        ..+||+++++++||.|||+|.|.+... ...|.|+|||.+ ..++
T Consensus         2 ~~~V~v~-~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d-~~~~   79 (126)
T cd04043           2 LFTIRIV-RAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS-FVGK   79 (126)
T ss_pred             EEEEEEE-EeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC-CCCC
Confidence            5889999 999999  6778899 998        357999999999999999999998885 688999999999 7778


Q ss_pred             CceeEEEEEecccccc---ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         123 DRVLGKVTIQRSDLHR---ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +++||++.++++++..   +...+.|++|.+       .|++++.+.+.
T Consensus        80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~  121 (126)
T cd04043          80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSME  121 (126)
T ss_pred             CceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEe
Confidence            9999999999987643   234678999965       58888887764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>KOG1011|consensus

Probab=99.78  E-value=7.2e-18  Score=150.02  Aligned_cols=113  Identities=19%  Similarity=0.384  Sum_probs=97.0

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC----
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS----  120 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~----  120 (268)
                      ...++++|+ +|.+|.  |..|.+| ||.     .+.||+++-..+||+|||.|+|+..+....+.+.|||.|..+    
T Consensus       294 sakitltvl-caqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  294 SAKITLTVL-CAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             ceeeEEeee-ecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence            467899999 999998  8999999 999     577899999999999999999999999999999999998322    


Q ss_pred             ------CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         121 ------KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       121 ------~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                            ..|+|+|+..|.+..+.  .+.+-|+.|..+...+.+.|-|++.+..+
T Consensus       373 rqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEE
Confidence                  36899999999888775  56889999998887777788776655543

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=3.1e-18  Score=124.21  Aligned_cols=91  Identities=20%  Similarity=0.293  Sum_probs=80.9

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCcee
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVL  126 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~i  126 (268)
                      |.|+|+ +|++|+  +..+.+| ||+     +.++|++++++.||+|||+|.|.+... .+.|.|+|+|.+ .   |++|
T Consensus         2 L~V~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~-~---~~~i   76 (105)
T cd04050           2 LFVYLD-SAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK-T---GKSL   76 (105)
T ss_pred             EEEEEe-eecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC-C---CCcc
Confidence            789999 999999  6678899 999     789999999999999999999999875 688999999999 4   7899


Q ss_pred             EEEEEecccccccc--CccceecCccc
Q psy3954         127 GKVTIQRSDLHRIS--NKEHWFPLTPV  151 (268)
Q Consensus       127 G~~~i~l~~l~~~~--~~~~w~~L~~~  151 (268)
                      |++.++|.++....  ..+.|++|.+.
T Consensus        77 G~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          77 GSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEEHHHhhccccceeeeeEecCCC
Confidence            99999999987543  46899999753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.77  E-value=7.3e-18  Score=125.97  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=91.7

Q ss_pred             eEEEEEEEcccCccc--c-CCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC
Q psy3954          54 GTLRIRIQYTADHIL--Q-PHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~-~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~  122 (268)
                      |.|.|+|+ +|++|+  + ..+.+| ||+       ..++|++++++.||.|||.|.|.+....+.|.|+|||.+ ..++
T Consensus         2 g~l~v~v~-~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~-~~~~   79 (124)
T cd04044           2 GVLAVTIK-SARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFN-DKRK   79 (124)
T ss_pred             eEEEEEEE-cccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecC-CCCC
Confidence            68999999 999998  3 346789 998       368999999999999999999999866889999999999 7788


Q ss_pred             CceeEEEEEeccccccccCcc-ceecCcccCCCcccceEEEEEEEEc
Q psy3954         123 DRVLGKVTIQRSDLHRISNKE-HWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      |++||++.++++++......+ .|..+..   .....|+|++++.|.
T Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~  123 (124)
T cd04044          80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFF  123 (124)
T ss_pred             CceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeC
Confidence            999999999999998666554 3444442   334579999999884

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.77  E-value=4.4e-18  Score=125.25  Aligned_cols=93  Identities=19%  Similarity=0.290  Sum_probs=79.8

Q ss_pred             eEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954          54 GTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG  127 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG  127 (268)
                      +.|.|+|+ +|++|++.. ..| ||.     ++.+|++.++ .||.|||+|.|.+......|.|+|||.| .+ .|++||
T Consensus         2 ~~L~V~Vv-~Ar~L~~~~-~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd-~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVK-KAKLDGAPD-KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKG-LI-WDTLVG   76 (127)
T ss_pred             ceEEEEEE-EeeCCCCCC-CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCC-Cc-CCCceE
Confidence            57999999 999998433 457 999     7789999987 5999999999999877677999999999 55 799999


Q ss_pred             EEEEeccccccccCc--cceecCccc
Q psy3954         128 KVTIQRSDLHRISNK--EHWFPLTPV  151 (268)
Q Consensus       128 ~~~i~l~~l~~~~~~--~~w~~L~~~  151 (268)
                      ++.++|.++......  ..|++|.|.
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChH
Confidence            999999998855544  899999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.77  E-value=2.1e-18  Score=126.36  Aligned_cols=91  Identities=20%  Similarity=0.302  Sum_probs=79.2

Q ss_pred             eEEEEEEEcccCccc--cCC-CCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954          54 GTLRIRIQYTADHIL--QPH-YYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD  117 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~-~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d  117 (268)
                      |.|+|+|+ +|++|+  +.. +.+| ||+        ..++|+++++|+||+|||+|.|.+...    ...|.|+|||+|
T Consensus         1 G~L~V~v~-~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIH-RATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEE-EeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            57999999 999999  666 8899 998        357999999999999999999987653    478999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                       ..++|++||++.++++++.   ....|++++
T Consensus        80 -~~~~dd~lG~~~i~l~~l~---~~~~~~~~~  107 (111)
T cd04041          80 -RFTADDRLGRVEIDLKELI---EDRNWMGRR  107 (111)
T ss_pred             -CCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence             7888999999999999997   345777764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.77  E-value=2.5e-18  Score=130.62  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=91.0

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..+++|...             .+.|.|+|+ +|++|+  +..|.+| ||+          ...||+++++++||.|
T Consensus         2 G~l~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w   67 (136)
T cd08404           2 GELLLSLCYQPT-------------TNRLTVVVL-KARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVF   67 (136)
T ss_pred             CeEEEEEEEeCC-------------CCeEEEEEE-EeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCcc
Confidence            567777777655             678999999 999998  7788999 998          2568999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||+|.|.++..   ...|.|+|||++ .++++++||++.+++..  .+.....|+++..
T Consensus        68 ~e~F~f~v~~~~~~~~~l~~~v~d~d-~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          68 NESFVFDIPSEELEDISVEFLVLDSD-RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CceEEEECCHHHhCCCEEEEEEEECC-CCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            99999998764   567999999999 78899999999999988  3566789998854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.77  E-value=2.2e-18  Score=129.23  Aligned_cols=86  Identities=30%  Similarity=0.444  Sum_probs=75.2

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-----CCceEEEEEEecC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-----DPIELVVSLHHDI  244 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-----~~~~l~i~V~d~~  244 (268)
                      +.|+|++|+||+  +..|.+||||++.+.     ..+++|++++++.||+|||.|.|.++..     ....|.|+|||++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~   75 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN   75 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence            479999999997  557789999999996     5678999999999999999999998762     2223999999999


Q ss_pred             CC-CCeeeEEEEEeCCccC
Q psy3954         245 SG-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       245 ~~-~~~~lG~~~l~l~~~~  262 (268)
                      .+ ++++||++.|+++++.
T Consensus        76 ~~~~d~~iG~~~i~l~~l~   94 (126)
T cd08682          76 LLGLDKFLGQVSIPLNDLD   94 (126)
T ss_pred             ccCCCceeEEEEEEHHHhh
Confidence            88 8999999999999986

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.76  E-value=2.4e-18  Score=130.78  Aligned_cols=107  Identities=17%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      .|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ...||++++++.||.
T Consensus         1 ~G~l~~sl~y~~~-------------~~~L~v~vi-~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (136)
T cd08405           1 RGELLLSLCYNPT-------------ANRITVNII-KARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV   66 (136)
T ss_pred             CcEEEEEEEEcCC-------------CCeEEEEEE-EeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence            3778888888866             789999999 999998  6788899 998          246899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      |||+|.|.++.+   ...|.|+|||.+ ..++|++||++.+++.+.  +...+.|+++..
T Consensus        67 wne~F~f~i~~~~~~~~~l~~~v~d~~-~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          67 FNESFIFNIPLERLRETTLIITVMDKD-RLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEECC-CCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            999999998754   468999999999 788999999999999876  555778887643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.76  E-value=2.9e-18  Score=130.01  Aligned_cols=108  Identities=19%  Similarity=0.366  Sum_probs=88.9

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..+++|...             .+.|.|+|+ +|++|+  +..|.+| ||+          ...+|+++++|+||+|
T Consensus         1 G~i~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w   66 (135)
T cd08410           1 GELLLSLNYLPS-------------AGRLNVDII-RAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY   66 (135)
T ss_pred             CcEEEEEEECCC-------------CCeEEEEEE-EecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence            567888888876             789999999 999998  7778999 998          3468999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      ||+|.|.++.+   ...|.|+|||++ ..+++++||++.+...... ....+.|..+.+.
T Consensus        67 nE~F~f~i~~~~l~~~~l~~~V~d~d-~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~  124 (135)
T cd08410          67 NESFSFKVPQEELENVSLVFTVYGHN-VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS  124 (135)
T ss_pred             ceeEEEeCCHHHhCCCEEEEEEEeCC-CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence            99999998765   347999999999 7889999999987653332 2346788887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG1030|consensus

Probab=99.76  E-value=1.7e-18  Score=131.12  Aligned_cols=89  Identities=25%  Similarity=0.322  Sum_probs=78.9

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .|-|.|.|++|.||.  |..+++||||.+.++     .++.+|+++.+++||+|||.|+|.+.... ..|.++|||+|.+
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f   78 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF   78 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence            367899999999996  556889999999998     78899999999999999999999886432 2399999999999


Q ss_pred             -CCeeeEEEEEeCCccCC
Q psy3954         247 -LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~  263 (268)
                       +||+||++.|++..+..
T Consensus        79 s~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             CcccccceeeeccHHHHH
Confidence             99999999999988765

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.76  E-value=3.1e-18  Score=125.28  Aligned_cols=92  Identities=24%  Similarity=0.439  Sum_probs=81.5

Q ss_pred             EEEEEEcccCccc--c-CCCCCC-ceE-----EEeeecccCCCCCCcc-CcEEEEEecCC---CcEEEEEEEeCCCCCCC
Q psy3954          56 LRIRIQYTADHIL--Q-PHYYED-LCT-----QILNSPSVNPVTSPFF-GEEFQFDIPRR---FRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        56 L~V~v~~~a~~L~--~-~~~~~d-yv~-----~~~~T~~~~~t~nP~w-ne~f~f~v~~~---~~~l~~~v~d~d~~~~~  122 (268)
                      |.|+|+ +|++|+  + ..+.+| ||+     ..+||+++++++||.| ||+|.|.++..   ...|.|+|||++ ..++
T Consensus         1 l~V~v~-~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-~~~~   78 (110)
T cd08688           1 LKVRVV-AARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-TYSA   78 (110)
T ss_pred             CEEEEE-EEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC-CCCC
Confidence            579999 999998  4 367899 999     7899999999999999 99999998875   478999999999 7889


Q ss_pred             CceeEEEEEecccccc---ccCccceecCc
Q psy3954         123 DRVLGKVTIQRSDLHR---ISNKEHWFPLT  149 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~  149 (268)
                      +++||++.+++.++..   ......||+|.
T Consensus        79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9999999999999986   34578899884

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.76  E-value=2.9e-18  Score=129.85  Aligned_cols=104  Identities=19%  Similarity=0.326  Sum_probs=88.4

Q ss_pred             EeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCc
Q psy3954          30 KHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGE   96 (268)
Q Consensus        30 ~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne   96 (268)
                      ++.++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ...+|+++++++||.|||
T Consensus         2 i~~~l~y~~~-------------~~~L~V~Vi-~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne   67 (133)
T cd08384           2 ILVSLMYNTQ-------------RRGLIVGII-RCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE   67 (133)
T ss_pred             EEEEEEEcCC-------------CCEEEEEEE-EEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCccc
Confidence            4566777766             789999999 999999  6778899 998          357899999999999999


Q ss_pred             EEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          97 EFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        97 ~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      +|.|.++..   ...|.|+|||.+ ..++|++||++.+++..  .+.....|+++..
T Consensus        68 ~f~f~~~~~~l~~~~l~~~V~d~d-~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          68 EFFYDIKHSDLAKKTLEITVWDKD-IGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             EEEEECCHHHhCCCEEEEEEEeCC-CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            999998765   578999999999 78889999999999985  3455678988754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.76  E-value=5e-18  Score=128.64  Aligned_cols=90  Identities=26%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .|.|.|+|++|++|+  +..|.+||||++.+.     ...++|++++++.||.|||.|.|.+.....+.|.|+|||++..
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            577899999999997  567889999999986     5678999999999999999999998654444599999999988


Q ss_pred             -CCeeeEEEEEeCCccCC
Q psy3954         247 -LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~  263 (268)
                       ++++||++.+++.++..
T Consensus        89 ~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          89 SPDDFLGRTEIRVADILK  106 (136)
T ss_pred             CCCCeeEEEEEEHHHhcc
Confidence             89999999999998875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.76  E-value=1.2e-17  Score=126.63  Aligned_cols=108  Identities=21%  Similarity=0.315  Sum_probs=88.8

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC----------CCcEEEEEEEeC
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR----------RFRHLAVYAYDR  116 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~----------~~~~l~~~v~d~  116 (268)
                      +|+|+|+ +|++|+  +..+.+| ||+     ...||+++++|+||.|||.|.|.+..          ....|.|+|||+
T Consensus         2 ~l~v~V~-~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIY-QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEE-EeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            6899999 999998  7788999 998     78899999999999999999997421          125799999999


Q ss_pred             CCCCCCCceeEEEEE-ecccccc---ccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         117 DRTSKTDRVLGKVTI-QRSDLHR---ISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       117 d~~~~~d~~iG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      + ..++|++||++.+ ++..+..   ......|++|....   ...|+|++++.+
T Consensus        81 d-~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~  131 (135)
T cd04017          81 D-SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFEL  131 (135)
T ss_pred             c-CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEE
Confidence            9 7889999999987 4444442   35677999997432   358999999876

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.75  E-value=6.8e-18  Score=122.76  Aligned_cols=84  Identities=12%  Similarity=0.254  Sum_probs=73.3

Q ss_pred             eEEEEEEEcccCccc--cC---C-CCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCCC
Q psy3954          54 GTLRIRIQYTADHIL--QP---H-YYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRT  119 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~---~-~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~  119 (268)
                      |.|.|+|+ +|++|+  +.   . +.+| ||+     ..+||+++++++||+|||.|.|.+...  ...|.|+|||++ .
T Consensus         1 g~l~v~v~-~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d-~   78 (108)
T cd04039           1 GVVFMEIK-SITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD-K   78 (108)
T ss_pred             CEEEEEEE-eeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC-C
Confidence            67999999 999999  32   1 3479 999     778999999999999999999998654  468999999999 7


Q ss_pred             CCCCceeEEEEEeccccccc
Q psy3954         120 SKTDRVLGKVTIQRSDLHRI  139 (268)
Q Consensus       120 ~~~d~~iG~~~i~l~~l~~~  139 (268)
                      .++|++||++.++|+++..+
T Consensus        79 ~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          79 FSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             CCCCcceEEEEEEHHHHHhh
Confidence            88999999999999998743

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=9.7e-18  Score=124.80  Aligned_cols=88  Identities=22%  Similarity=0.306  Sum_probs=76.2

Q ss_pred             eEEEEEceecC---CC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954         171 SLMVNVNEASG---LT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       171 ~L~v~v~~a~~---L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~  245 (268)
                      .|.|+|++|++   |+  +..|.+||||.+.+.     .++.+|++++++.||+|||+|.|.+.... ..|.|+|||++.
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~   74 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQ   74 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCC
Confidence            37899999999   65  567889999999987     56789999999999999999999986432 359999999887


Q ss_pred             C-------CCeeeEEEEEeCCccCCC
Q psy3954         246 G-------LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       246 ~-------~~~~lG~~~l~l~~~~~~  264 (268)
                      .       ++++||++.++++++..+
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~~~  100 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLEDD  100 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHccCC
Confidence            5       899999999999998765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=1.9e-17  Score=124.38  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=91.7

Q ss_pred             EEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEE
Q psy3954          60 IQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVT  130 (268)
Q Consensus        60 v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~  130 (268)
                      |+ +|++|+...+.+| ||+     ..++|++++++.||+|||+|.|.+...   ...|.|+|||++ ..++|++||++.
T Consensus         2 vi-~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~-~~~~d~~iG~~~   79 (127)
T cd08373           2 VV-SLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE-KVGRNRLIGSAT   79 (127)
T ss_pred             eE-EeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC-CCCCCceEEEEE
Confidence            56 8999997677899 998     678999999999999999999998653   689999999999 788899999999


Q ss_pred             EeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         131 IQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       131 i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++++++..+.....|++|.+... ....|+|++++.|.
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~-~~~~~~l~l~~~~~  116 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNG-RPTGATISLEVSYQ  116 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCC-CcccEEEEEEEEEe
Confidence            99999998777889999976543 33469999999885

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.75  E-value=1.6e-17  Score=122.92  Aligned_cols=106  Identities=40%  Similarity=0.698  Sum_probs=86.9

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCce
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|+|+ +|++|+.. +.+| ||.      ..++|+++++ .||.|||+|.|.++..   ...|.+.+||.+ ...++..
T Consensus         2 L~v~vi-~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~-~~~~~~~   77 (117)
T cd08383           2 LRLRIL-EAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR-SKDRDIV   77 (117)
T ss_pred             eEEEEE-EecCCCcC-CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc-cCCCeeE
Confidence            789999 99999944 7899 999      4589999999 9999999999998874   467888999988 5666777


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      +|.+.+.  .+..+...+.|++|.+.+......|+|++.+.|
T Consensus        78 ~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            7776554  444466678999999877666678999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.75  E-value=5.5e-18  Score=128.43  Aligned_cols=106  Identities=17%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..|+.|...             .+.|+|+|+ +|++|+  +..+.+| ||+          ...+|+++++++||.|
T Consensus         1 g~l~~~~~y~~~-------------~~~L~V~v~-~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w   66 (134)
T cd08403           1 GELMFSLCYLPT-------------AGRLTLTII-KARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY   66 (134)
T ss_pred             CeEEEEEEEcCC-------------CCEEEEEEE-EeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence            567778888866             789999999 999999  6778999 997          2568999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||+|.|.++.+   ...|.|+|||++ ..+++++||++.+++.  ..+.+.+.|+++-.
T Consensus        67 ne~f~f~i~~~~~~~~~l~~~v~d~~-~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~  122 (134)
T cd08403          67 NEALVFDVPPENVDNVSLIIAVVDYD-RVGHNELIGVCRVGPN--ADGQGREHWNEMLA  122 (134)
T ss_pred             cceEEEECCHHHhCCCEEEEEEEECC-CCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence            99999998765   357999999999 7889999999999877  33456778987743

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.75  E-value=2.9e-17  Score=126.00  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             EEEEEEcccCc--cc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC---------CcEEEE
Q psy3954          56 LRIRIQYTADH--IL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR---------FRHLAV  111 (268)
Q Consensus        56 L~V~v~~~a~~--L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~---------~~~l~~  111 (268)
                      ..++|. .|++  |+  +..+.+| ||+          ++.||+++++|+||+|||+|.|.++..         ...|.|
T Consensus         4 ~el~i~-~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIV-RCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEE-EeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            345555 5555  66  5677899 998          589999999999999999999998765         357999


Q ss_pred             EEEeCCCCC-CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         112 YAYDRDRTS-KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       112 ~v~d~d~~~-~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +|||.+ .+ .+|++||++.++|+.+........|++|...  .....|+|+++++..
T Consensus        83 ~V~d~~-~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~--~k~~Gg~l~v~ir~r  137 (155)
T cd08690          83 EVYHKG-GFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG--RKATGGKLEVKVRLR  137 (155)
T ss_pred             EEEeCC-CcccCCCeeEEEEEEcccccccCcceEEEEhhhC--CCCcCCEEEEEEEec
Confidence            999999 54 5799999999999999877677789998643  234578999888764

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.75  E-value=4.7e-18  Score=129.04  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=89.0

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~   93 (268)
                      +.+..++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+           .+.||++++++.||+
T Consensus         2 ~ei~~sL~Y~~~-------------~~~L~V~Vi-karnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv   67 (138)
T cd08408           2 PELLLGLEYNAL-------------TGRLSVEVI-KGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE   67 (138)
T ss_pred             CeEEEEeEEcCC-------------CCeEEEEEE-EecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence            456677778766             789999999 999999  7778899 999           246899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |||+|.|.++.+   ...|.|.|||.+ .++++++||++.+++.... ..+.++|..+.
T Consensus        68 fnEtF~f~i~~~~l~~~~L~~~V~~~~-~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l  124 (138)
T cd08408          68 FKETFVFQVALFQLSEVTLMFSVYNKR-KMKRKEMIGWFSLGLNSSG-EEEEEHWNEMK  124 (138)
T ss_pred             EeeeEEEECCHHHhCccEEEEEEEECC-CCCCCcEEEEEEECCcCCC-chHHHHHHHHH
Confidence            999999999875   579999999999 6889999999999887443 23457888764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.75  E-value=1.4e-17  Score=124.41  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             EEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC-CCcc
Q psy3954          29 VKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT-SPFF   94 (268)
Q Consensus        29 ~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~-nP~w   94 (268)
                      .++.++.|...             .+.|+|+|+ +|+||+  ...+..| ||+          .+.||+++++|+ ||+|
T Consensus         2 el~~sL~Y~p~-------------~~rLtV~Vi-karnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~f   67 (135)
T cd08692           2 ELQLGTCFQAV-------------NSRIQLQIL-EAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKW   67 (135)
T ss_pred             eEEEEeeecCc-------------CCeEEEEEE-EccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCcee
Confidence            35667777766             789999999 999999  3455678 999          688999999995 6999


Q ss_pred             CcEEEEEecCC--CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          95 GEEFQFDIPRR--FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        95 ne~f~f~v~~~--~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      ||+|.|+++.+  ...|.++|||++ ..+++++||++.++..... +.+.++|.+.
T Consensus        68 NEsF~Fdv~~~~~~v~l~v~v~d~~-~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m  121 (135)
T cd08692          68 GETMIFPVTQQEHGIQFLIKLYSRS-SVRRKHFLGQVWISSDSSS-SEAVEQWKDT  121 (135)
T ss_pred             cceEEEeCCchhheeEEEEEEEeCC-CCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence            99999999876  567889999999 7889999999999987532 3446788764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.74  E-value=1.2e-17  Score=128.22  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=75.4

Q ss_pred             eEEEEEceecCCCCC--C--------------CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         171 SLMVNVNEASGLTQV--N--------------GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~--~--------------g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      .|.|+|++|++|+..  .              +.+||||+|.+.     ..+.+|++++++.||+|||+|.|++..+...
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLC   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEEeeCCCcC
Confidence            478999999999832  2              358999999987     4567999999999999999999997655555


Q ss_pred             e-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         235 E-LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       235 ~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      . |.|+|||++.. ++++||.+.+++.++..
T Consensus        76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~  106 (151)
T cd04018          76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISN  106 (151)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence            4 99999999998 99999999999998755

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.74  E-value=1.6e-17  Score=123.86  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc-CCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS-LGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~-~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+ +..+.+||||++++.     ..+++|++++++.||+|||+|.|... ......|.|+|||++..
T Consensus        27 ~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          27 LATLTVTVLRATGLWGDYFTSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             cEEEEEEEEECCCCCcCcCCCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            577889999999997 556779999999986     34889999999999999999999742 23333499999999998


Q ss_pred             -CCeeeEEEEEeCCccCCC
Q psy3954         247 -LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~~  264 (268)
                       ++++||++.+++.....+
T Consensus       102 s~dd~IG~~~i~l~~~~~~  120 (127)
T cd04032         102 WDDDLLGTCSVVPEAGVHE  120 (127)
T ss_pred             CCCCeeEEEEEEecCCcee
Confidence             999999999999876543

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=2e-17  Score=122.20  Aligned_cols=88  Identities=23%  Similarity=0.293  Sum_probs=76.9

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      ++|.|++|++|+  +..|.+||||++++.     ..+.+|++++++.||.|||.|.|.+.......|.|+|||++.. ++
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~   76 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKD   76 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999997  456789999999986     4678999999999999999999998755434499999999988 89


Q ss_pred             eeeEEEEEeCCccCCC
Q psy3954         249 VFLGEVHIPLNNKETS  264 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~~  264 (268)
                      ++||++.++++++..+
T Consensus        77 ~~iG~~~~~l~~l~~~   92 (116)
T cd08376          77 EFIGRCEIDLSALPRE   92 (116)
T ss_pred             CeEEEEEEeHHHCCCC
Confidence            9999999999888764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.74  E-value=1.8e-17  Score=122.82  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=75.5

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      |.|.|.|++|++|+  +..+.+||||++.+.     ..+++|+++. ++.||.|||.|.|.+..+..+.|.|+|||++..
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG-----GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC-----CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            57999999999997  456779999999987     3567888875 578999999999998765444599999998776


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      ++++||++.++++++..
T Consensus        76 ~~~~iG~~~~~l~~~~~   92 (118)
T cd08681          76 KPDLIGDTEVDLSPALK   92 (118)
T ss_pred             CCcceEEEEEecHHHhh
Confidence            78999999999998754

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.74  E-value=2.9e-17  Score=122.63  Aligned_cols=105  Identities=19%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF   93 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~   93 (268)
                      +|.+..+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ...||++++++.||.
T Consensus         1 ~G~~~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~   66 (123)
T cd04035           1 LGTLEFTLLYDPA-------------NSALHCTII-RAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE   66 (123)
T ss_pred             CcEEEEEEEEeCC-------------CCEEEEEEE-EeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCC
Confidence            5888999999877             688999999 999998  6677899 998          368999999999999


Q ss_pred             cCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954          94 FGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP  147 (268)
Q Consensus        94 wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~  147 (268)
                      |||+|.|. +...   ...|.|+|||.+ .. .+++||++.++++++..++..+.|+.
T Consensus        67 Wne~f~f~~~~~~~~~~~~l~~~v~d~~-~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          67 FNETLTYYGITEEDIQRKTLRLLVLDED-RF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             ccceEEEcCCCHHHhCCCEEEEEEEEcC-Cc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            99999996 4432   578999999999 66 78899999999999987666666554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.74  E-value=2.4e-17  Score=124.68  Aligned_cols=97  Identities=20%  Similarity=0.253  Sum_probs=84.9

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE------------EEeeecccCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT------------QILNSPSVNPVT   90 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------------~~~~T~~~~~t~   90 (268)
                      +.|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+            ..+||+++++|+
T Consensus         1 ~~G~l~~~l~y~~~-------------~~~L~V~Vi-~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~   66 (133)
T cd04009           1 PYGVLTVKAYYRAS-------------EQSLRVEIL-NARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTL   66 (133)
T ss_pred             CceEEEEEEEEcCC-------------CCEEEEEEE-EeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCC
Confidence            35788888888765             678999999 999999  6678899 998            157999999999


Q ss_pred             CCccCcEEEEEecCC-----CcEEEEEEEeCCCCCCCCceeEEEEEeccccc
Q psy3954          91 SPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH  137 (268)
Q Consensus        91 nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~  137 (268)
                      ||+|||+|.|.+...     ...|.|+|||++ ..++|++||++.++|+++.
T Consensus        67 nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d-~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYD-LLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CCccCCEEEEEechhhcccCCCEEEEEEEecC-CCCCCcEeEEEEEeHHHCC
Confidence            999999999998753     568999999999 7888999999999999887

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.73  E-value=3.1e-17  Score=122.29  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=77.8

Q ss_pred             cccCCCeEEEEEEEcccCccc-cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEe-cC-CCcEEEEEEEeCCC
Q psy3954          48 QIIQDLGTLRIRIQYTADHIL-QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDI-PR-RFRHLAVYAYDRDR  118 (268)
Q Consensus        48 ~~~~~~~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v-~~-~~~~l~~~v~d~d~  118 (268)
                      ....+.+.|.|+|+ +|++|+ +..+.+| ||+     +++||+++++++||+|||+|.|.. .. ....|.|+|||++ 
T Consensus        22 ~~~~~~~~L~V~V~-~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d-   99 (127)
T cd04032          22 PTRRGLATLTVTVL-RATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD-   99 (127)
T ss_pred             cCcCCcEEEEEEEE-ECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC-
Confidence            34677899999999 999999 7778899 998     689999999999999999999973 33 3789999999999 


Q ss_pred             CCCCCceeEEEEEeccccc
Q psy3954         119 TSKTDRVLGKVTIQRSDLH  137 (268)
Q Consensus       119 ~~~~d~~iG~~~i~l~~l~  137 (268)
                      ..++|++||++.++++...
T Consensus       100 ~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         100 NGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCeeEEEEEEecCCc
Confidence            7889999999999999665

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.73  E-value=2.4e-17  Score=122.37  Aligned_cols=92  Identities=21%  Similarity=0.224  Sum_probs=77.4

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCe
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNV  249 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~  249 (268)
                      |.|+|++|++|+  +..+.+||||++.+...  ...+++|++++++.||+|||+|.|.+.......|.|+|||++..+++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~   79 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA--SDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDD   79 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC--CCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCc
Confidence            789999999997  44677999999998622  23568999999999999999999998765433499999999877889


Q ss_pred             eeEEEEEeCCccCCCC
Q psy3954         250 FLGEVHIPLNNKETSS  265 (268)
Q Consensus       250 ~lG~~~l~l~~~~~~~  265 (268)
                      +||++.++++.+..+.
T Consensus        80 ~iG~~~~~l~~l~~g~   95 (119)
T cd04036          80 HLGTVLFDVSKLKLGE   95 (119)
T ss_pred             ccEEEEEEHHHCCCCC
Confidence            9999999999887653

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.73  E-value=3.5e-17  Score=122.19  Aligned_cols=88  Identities=31%  Similarity=0.334  Sum_probs=77.0

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      +|.|+|++|++|+  +..+.+||||++++.     ..+.+|++++++.||.|||+|.|.+.......|.|+|||++.. +
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~   75 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSK   75 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCC
Confidence            5899999999996  456779999999986     4568999999999999999999998765544499999999888 8


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      +++||++.++++++..
T Consensus        76 ~~~iG~~~~~l~~l~~   91 (123)
T cd04025          76 NDFLGKVVFSIQTLQQ   91 (123)
T ss_pred             CcEeEEEEEEHHHccc
Confidence            9999999999998864

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.73  E-value=1.6e-17  Score=121.48  Aligned_cols=87  Identities=29%  Similarity=0.249  Sum_probs=76.9

Q ss_pred             EEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCcc-ceEEEEEccCCCCc--eEEEEEEecCC
Q psy3954         172 LMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVF-NESFMFDRSLGDPI--ELVVSLHHDIS  245 (268)
Q Consensus       172 L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~--~l~i~V~d~~~  245 (268)
                      |.|+|++|++|+.   ..|.+||||++++.     ..+++|+++++++||.| ||.|.|.++...+.  .|.|+|||++.
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~   75 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-----STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT   75 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC-----CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence            5799999999973   35679999999997     37789999999999999 99999999876654  39999999998


Q ss_pred             C-CCeeeEEEEEeCCccCC
Q psy3954         246 G-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~  263 (268)
                      . ++++||++.+++.++..
T Consensus        76 ~~~~~~iG~~~~~l~~l~~   94 (110)
T cd08688          76 YSANDAIGKVYIDLNPLLL   94 (110)
T ss_pred             CCCCCceEEEEEeHHHhcc
Confidence            8 89999999999999866

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=2.2e-17  Score=119.78  Aligned_cols=85  Identities=29%  Similarity=0.436  Sum_probs=75.5

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCe
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNV  249 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~  249 (268)
                      |.|+|++|++|+  +..+.+||||++.+.     ..+++|++++++.||.|||.|.|.+..+..+.|.|+|||++.  ++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~   74 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GK   74 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CC
Confidence            789999999998  456779999999997     478899999999999999999999987666669999999876  88


Q ss_pred             eeEEEEEeCCccCC
Q psy3954         250 FLGEVHIPLNNKET  263 (268)
Q Consensus       250 ~lG~~~l~l~~~~~  263 (268)
                      +||++.++|.++..
T Consensus        75 ~iG~~~i~l~~l~~   88 (105)
T cd04050          75 SLGSLTLPLSELLK   88 (105)
T ss_pred             ccEEEEEEHHHhhc
Confidence            99999999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=4.6e-17  Score=119.88  Aligned_cols=86  Identities=20%  Similarity=0.231  Sum_probs=74.0

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEecCCCC
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGL  247 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~  247 (268)
                      .+.|.|.|++||+|++.. ..||||++.++     ..+.+|++.++ .||.|||.|.|.+..  .+. |.|+|||++..+
T Consensus         1 m~~L~V~Vv~Ar~L~~~~-~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~   71 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD-KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIW   71 (127)
T ss_pred             CceEEEEEEEeeCCCCCC-CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcC
Confidence            368999999999998644 46999999997     56789999988 599999999999854  333 999999998669


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      |++||++.|+|+++..
T Consensus        72 DD~lG~v~i~L~~v~~   87 (127)
T cd08394          72 DTLVGTVWIPLSTIRQ   87 (127)
T ss_pred             CCceEEEEEEhHHccc
Confidence            9999999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG1028|consensus

Probab=99.73  E-value=2.6e-17  Score=146.29  Aligned_cols=109  Identities=28%  Similarity=0.361  Sum_probs=96.9

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      ....|+|.+++.|.  ...|.|+|++|++|+  +..|.+||||++++.++  +..+.+|++.++++||.|||+|.|.|+.
T Consensus       150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd--k~~k~kT~v~r~tlnP~fnEtf~f~v~~  227 (421)
T KOG1028|consen  150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD--KKGKFKTRVHRKTLNPVFNETFRFEVPY  227 (421)
T ss_pred             ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC--CCCcceeeeeecCcCCccccceEeecCH
Confidence            45689999999998  889999999999997  54567999999999944  4678999999999999999999999888


Q ss_pred             CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954         231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~  265 (268)
                      .++..  |.++|||.|++ ++++||++.++|..+....
T Consensus       228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~  265 (421)
T KOG1028|consen  228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLS  265 (421)
T ss_pred             HHhccCEEEEEEEecCCcccccEEEEEEecCccccccc
Confidence            77766  99999999999 9999999999988887643

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=3.6e-17  Score=121.58  Aligned_cols=85  Identities=27%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeee
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFL  251 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~l  251 (268)
                      |.|.|++|+||+..  .+||||++.+.     ..+.+|++++++.||+|||+|.|.+....-..|.|+|||++..++++|
T Consensus         2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~-----~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l   74 (121)
T cd08378           2 LYVRVVKARGLPAN--SNDPVVEVKLG-----NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL   74 (121)
T ss_pred             EEEEEEEecCCCcc--cCCCEEEEEEC-----CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence            78999999999866  79999999997     457899999999999999999999754433449999999987789999


Q ss_pred             EEEEEeCCccCC
Q psy3954         252 GEVHIPLNNKET  263 (268)
Q Consensus       252 G~~~l~l~~~~~  263 (268)
                      |++.++++++..
T Consensus        75 G~~~i~l~~l~~   86 (121)
T cd08378          75 GGVCFDLSEVPT   86 (121)
T ss_pred             eeEEEEhHhCcC
Confidence            999999999865

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.73  E-value=4.2e-17  Score=121.95  Aligned_cols=97  Identities=22%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC----CcEEEEEEEeCCCCC
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTS  120 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~  120 (268)
                      |.|.|+|+ +|++|+  +..+.+| ||+     ...+|+++++ +.||.|||+|.|.++..    ...|.|+|||.+ ..
T Consensus         1 g~L~V~V~-~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~-~~   78 (124)
T cd04049           1 GTLEVLLI-SAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD-NF   78 (124)
T ss_pred             CeEEEEEE-ecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc-cC
Confidence            57999999 999998  6677899 998     6678888875 89999999999998876    578999999999 78


Q ss_pred             CCCceeEEEEEeccccccccCccceecCcccC
Q psy3954         121 KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      ++|++||++.++++++......+.|+.|.|..
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            88999999999999998777889999998864

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.73  E-value=3.6e-17  Score=119.87  Aligned_cols=94  Identities=18%  Similarity=0.316  Sum_probs=81.4

Q ss_pred             CeEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-----CcEEEEEEEeCCCCCC
Q psy3954          53 LGTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~  121 (268)
                      ...|+|+|+ +|++|+  .+.+| ||+     ++++|++++++.||.|||+|.|.+...     ...|.|+|||.+ .++
T Consensus         3 ~~~l~V~v~-~a~~L~--~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~-~~~   78 (111)
T cd04011           3 DFQVRVRVI-EARQLV--GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR-SLR   78 (111)
T ss_pred             cEEEEEEEE-EcccCC--CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc-ccc
Confidence            568999999 999998  67889 999     788999999999999999999996543     468999999999 788


Q ss_pred             CCceeEEEEEecccccccc---CccceecCcc
Q psy3954         122 TDRVLGKVTIQRSDLHRIS---NKEHWFPLTP  150 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~---~~~~w~~L~~  150 (268)
                      +|++||++.++++++....   ....|++|..
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            8999999999999987543   3578998854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.72  E-value=2.8e-17  Score=126.14  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=78.7

Q ss_pred             EEEEEEEcccCccc--cCC--------------CCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC--CCcEEE
Q psy3954          55 TLRIRIQYTADHIL--QPH--------------YYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR--RFRHLA  110 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~--------------~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~--~~~~l~  110 (268)
                      .|.|+|+ +|++||  +.+              +.+| ||+     ++.||+++++++||+|||+|.|.+..  ....|.
T Consensus         1 ~~~V~V~-~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIY-RAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEE-EeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            3789999 999999  433              3689 999     77899999999999999999998643  367999


Q ss_pred             EEEEeCCCCCCCCceeEEEEEeccccccccC-------ccceecCcccC
Q psy3954         111 VYAYDRDRTSKTDRVLGKVTIQRSDLHRISN-------KEHWFPLTPVT  152 (268)
Q Consensus       111 ~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~  152 (268)
                      |+|||+| ..++|++||++.+++.++.....       ...|+.|....
T Consensus        80 ~~v~D~d-~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~  127 (151)
T cd04018          80 IQIRDWD-RVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP  127 (151)
T ss_pred             EEEEECC-CCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence            9999999 78899999999999998875332       24677775443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.72  E-value=4.6e-17  Score=121.18  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=77.0

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      +|.|+|++|++|+  +..|.+||||++.+. +   ...++|++++++.||+|||.|.|.+... -..|.|+|||++.. +
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~-~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~   75 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG-G---KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLT   75 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC-C---EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCC
Confidence            4899999999997  556889999999986 1   3578999999999999999999987542 23499999999998 9


Q ss_pred             CeeeEEEEEeCCccCCCC
Q psy3954         248 NVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~~~  265 (268)
                      +++||++.++++++..+.
T Consensus        76 ~~~iG~~~~~l~~l~~~~   93 (121)
T cd04042          76 DDFMGSAFVDLSTLELNK   93 (121)
T ss_pred             CcceEEEEEEHHHcCCCC
Confidence            999999999999987643

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=2.8e-17  Score=123.43  Aligned_cols=87  Identities=25%  Similarity=0.341  Sum_probs=75.4

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC-C--ceEEEEEEecCC
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD-P--IELVVSLHHDIS  245 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~-~--~~l~i~V~d~~~  245 (268)
                      +|.|+|++|++|+  +..|.+||||++.+.     ..+++|++++++.||+|||.|.|.+.... +  ..|.|+|||++.
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~   75 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR   75 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence            4899999999997  556789999999987     46789999999999999999999987532 2  239999999887


Q ss_pred             C--CCeeeEEEEEeCCccC
Q psy3954         246 G--LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       246 ~--~~~~lG~~~l~l~~~~  262 (268)
                      .  ++++||++.++++++.
T Consensus        76 ~~~~d~~lG~v~i~l~~l~   94 (127)
T cd04022          76 SGRRRSFLGRVRISGTSFV   94 (127)
T ss_pred             CcCCCCeeeEEEEcHHHcC
Confidence            6  7999999999999886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.72  E-value=3.2e-17  Score=124.20  Aligned_cols=107  Identities=19%  Similarity=0.299  Sum_probs=92.2

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.++.+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ..++|++++++.||.|
T Consensus         1 G~i~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w   66 (134)
T cd00276           1 GELLLSLSYLPT-------------AERLTVVVL-KARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF   66 (134)
T ss_pred             CeEEEEEEeeCC-------------CCEEEEEEE-EeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence            466777777765             689999999 999999  5678889 998          2569999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      ||+|.|.++..   ...|.|+|||.+ ..+++++||.+.+++++  .+...+.|++|...
T Consensus        67 ne~f~f~i~~~~l~~~~l~~~v~d~~-~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  123 (134)
T cd00276          67 NEAFSFDVPAEQLEEVSLVITVVDKD-SVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS  123 (134)
T ss_pred             eeeEEEECCHHHhCCcEEEEEEEecC-CCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence            99999998876   478999999999 67889999999999999  56678999998654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.72  E-value=4.4e-17  Score=122.00  Aligned_cols=105  Identities=21%  Similarity=0.279  Sum_probs=87.9

Q ss_pred             EEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccC-CCCCCccCcEEEEEecCC-----CcEEEEEEEeCCCC
Q psy3954          55 TLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVN-PVTSPFFGEEFQFDIPRR-----FRHLAVYAYDRDRT  119 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~-~t~nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~  119 (268)
                      .|.|+|+ +|++|+  +..+.+| ||+      ...+|+++. ++.||.|||.|.|.++..     ...|.|+|||.+ .
T Consensus         1 ~L~V~V~-sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~-~   78 (125)
T cd04051           1 TLEITII-SAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER-P   78 (125)
T ss_pred             CEEEEEE-EcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC-C
Confidence            3789999 999999  6678899 998      567888875 589999999999998777     689999999999 7


Q ss_pred             CCCCceeEEEEEeccccccccC-----ccceecCcccCCCcccceEEEE
Q psy3954         120 SKTDRVLGKVTIQRSDLHRISN-----KEHWFPLTPVTQDSEVQGKIQI  163 (268)
Q Consensus       120 ~~~d~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~v  163 (268)
                      +++|++||++.+++.++.....     ...|++|...+  +...|.|++
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence            7889999999999999986544     36899997644  556788764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=6.2e-17  Score=124.53  Aligned_cols=87  Identities=25%  Similarity=0.311  Sum_probs=75.6

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      |.|+|++|++|+  +..|.+||||++.+.     .+..+|++..+ +.||+|||.|.|.+.....+.|.|+|||++.. +
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~-----~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~   76 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG-----NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNK   76 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEEC-----CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCC
Confidence            789999999996  667889999999997     46788998876 69999999999998654444599999999887 8


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      +++||++.|+|+++..
T Consensus        77 dd~lG~v~i~L~~l~~   92 (150)
T cd04019          77 DEPLGRAVIPLNDIER   92 (150)
T ss_pred             CCeEEEEEEEHHHCcc
Confidence            9999999999999854

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.71  E-value=7.1e-17  Score=119.77  Aligned_cols=93  Identities=27%  Similarity=0.363  Sum_probs=79.1

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      |.|.|+|++|++|+  +..+.+||||++.+.     ....+|++++++.||.|||+|.|.+... -..|.|+|||++.. 
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~   74 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDK   74 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC-----CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCC
Confidence            57899999999997  456779999999986     4457999999999999999999987531 22399999999887 


Q ss_pred             CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ++++||++.+++.++..+...|
T Consensus        75 ~~~~iG~~~~~l~~~~~~~~~~   96 (119)
T cd08377          75 KPEFLGKVAIPLLSIKNGERKW   96 (119)
T ss_pred             CCceeeEEEEEHHHCCCCCceE
Confidence            8999999999999998776655

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.71  E-value=7.4e-17  Score=119.70  Aligned_cols=96  Identities=20%  Similarity=0.252  Sum_probs=84.7

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~  124 (268)
                      |.|+|+|+ +|++|+  +..+.+| ||+      ...+|++++++.||.|||+|.|.+....+.|.|+|||.+ ..++|+
T Consensus         1 g~L~V~Vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~-~~~~d~   78 (120)
T cd04045           1 GVLRLHIR-KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYE-KVGKDR   78 (120)
T ss_pred             CeEEEEEE-eeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECC-CCCCCC
Confidence            57899999 999999  6678999 998      468999999999999999999998877789999999999 788899


Q ss_pred             eeEEEEEeccccccccCccceecCcccC
Q psy3954         125 VLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      +||++.+++.++... ..+.|+.|...+
T Consensus        79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~  105 (120)
T cd04045          79 SLGSVEINVSDLIKK-NEDGKYVEYDDE  105 (120)
T ss_pred             eeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence            999999999999865 667888776544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.71  E-value=6.2e-17  Score=118.61  Aligned_cols=90  Identities=23%  Similarity=0.327  Sum_probs=77.1

Q ss_pred             CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC--Cc--eEEEEEEecCC
Q psy3954         170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PI--ELVVSLHHDIS  245 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~--~~--~l~i~V~d~~~  245 (268)
                      ..|.|.|++|++|+  .|.+||||++++.     .++++|++++++.||.|||.|.|.+....  +.  .|.|+|||++.
T Consensus         4 ~~l~V~v~~a~~L~--~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~   76 (111)
T cd04011           4 FQVRVRVIEARQLV--GGNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS   76 (111)
T ss_pred             EEEEEEEEEcccCC--CCCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence            46899999999999  6779999999998     45779999999999999999999875432  22  29999999998


Q ss_pred             C-CCeeeEEEEEeCCccCCCCC
Q psy3954         246 G-LNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~~~~  266 (268)
                      . ++++||++.++++++..+..
T Consensus        77 ~~~~~~iG~~~i~l~~v~~~~~   98 (111)
T cd04011          77 LRSDTLIGSFKLDVGTVYDQPD   98 (111)
T ss_pred             cccCCccEEEEECCccccCCCC
Confidence            8 89999999999999976543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.71  E-value=9.5e-17  Score=118.36  Aligned_cols=103  Identities=23%  Similarity=0.385  Sum_probs=88.0

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |+|+|+ +|++|+  +..+.+| ||+      ..++|+++.++.||.|||+|.|.++.. .+.|.|+|||.+ ..+++++
T Consensus         1 l~v~vi-~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~-~~~~~~~   78 (115)
T cd04040           1 LTVDVI-SAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD-RGGKDDL   78 (115)
T ss_pred             CEEEEE-eeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC-CCCCCCc
Confidence            578999 999999  6677889 998      457999999999999999999998875 789999999999 7888999


Q ss_pred             eEEEEEeccccccccCccceecCcccCCCcccceEEE
Q psy3954         126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ  162 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~  162 (268)
                      ||++.+++.++..+...+.|++|.+...  ...|.+.
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~g~--~~~~~~~  113 (115)
T cd04040          79 LGSAYIDLSDLEPEETTELTLPLDGQGG--GKLGAVF  113 (115)
T ss_pred             eEEEEEEHHHcCCCCcEEEEEECcCCCC--ccCceEE
Confidence            9999999999987777899999986542  2345553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.71  E-value=2.5e-16  Score=119.04  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=90.6

Q ss_pred             EEEEEEEcccCccc-cCCCCCC-ceE--------E----------EeeecccCCCCCCcc-CcEEEEEecCCCcEEEEEE
Q psy3954          55 TLRIRIQYTADHIL-QPHYYED-LCT--------Q----------ILNSPSVNPVTSPFF-GEEFQFDIPRRFRHLAVYA  113 (268)
Q Consensus        55 ~L~V~v~~~a~~L~-~~~~~~d-yv~--------~----------~~~T~~~~~t~nP~w-ne~f~f~v~~~~~~l~~~v  113 (268)
                      ...|+++ +|++|+ +..|.+| ||+        .          .+||+++++++||+| ||+|.|.+... +.|.|+|
T Consensus         2 ~~~~~~~-~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-~~L~v~V   79 (137)
T cd08691           2 SFSLSGL-QARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-DVLEIEV   79 (137)
T ss_pred             EEEEEEE-EeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-CEEEEEE
Confidence            3578999 999999 7778999 998        1          589999999999999 99999998654 7899999


Q ss_pred             EeCCCCCCC---CceeEEEEEecccccccc---CccceecCcccCCCcccceEEEEEE
Q psy3954         114 YDRDRTSKT---DRVLGKVTIQRSDLHRIS---NKEHWFPLTPVTQDSEVQGKIQIGV  165 (268)
Q Consensus       114 ~d~d~~~~~---d~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~v~l  165 (268)
                      ||++ ..++   |++||++.+++.++....   ....|++|..+.....+.|+|.+.+
T Consensus        80 ~D~~-~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          80 KDKF-AKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EecC-CCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9987 3333   789999999999987443   3567999988877777899998875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.70  E-value=1.2e-16  Score=119.34  Aligned_cols=89  Identities=21%  Similarity=0.248  Sum_probs=75.1

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      |+|.|++|++|+  +..|.+||||++.+...   ....+|.+++++.||+|||+|.|.+.......|.|+|||++.. ++
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d   78 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD   78 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999997  55678999999999621   2346788888999999999999987655545599999999988 99


Q ss_pred             eeeEEEEEeCCccCC
Q psy3954         249 VFLGEVHIPLNNKET  263 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~  263 (268)
                      ++||++.+++++...
T Consensus        79 d~iG~~~i~l~~~~~   93 (124)
T cd04037          79 DLIGETVIDLEDRFF   93 (124)
T ss_pred             ceeEEEEEeeccccc
Confidence            999999999988764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.70  E-value=1.6e-16  Score=118.14  Aligned_cols=88  Identities=23%  Similarity=0.267  Sum_probs=75.0

Q ss_pred             EEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         172 LMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       172 L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      |.|.|++|+||+.   ..|.+||||++.+.    .....+|+++++++||.|||.|.|.++.. ...|.|.|||++.. +
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCC
Confidence            6899999999974   34679999999985    12468999999999999999999998743 23599999999998 9


Q ss_pred             CeeeEEEEEeCCccCCC
Q psy3954         248 NVFLGEVHIPLNNKETS  264 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~~  264 (268)
                      +++||++.++++++..+
T Consensus        77 ~~~iG~~~i~l~~l~~~   93 (121)
T cd08401          77 DSVIGKVAIKKEDLHKY   93 (121)
T ss_pred             CceEEEEEEEHHHccCC
Confidence            99999999999998753

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.4e-16  Score=119.68  Aligned_cols=88  Identities=25%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             CeEEEEEceecCCC--CC--CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954         170 TSLMVNVNEASGLT--QV--NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~--~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~  245 (268)
                      |.|.|.|++|++|+  +.  .+.+||||++.+.     ..+.+|++++++.||.|||.|.|.+.......|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~   75 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR   75 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC
Confidence            57899999999997  45  6779999999986     467899999999999999999999875333459999999998


Q ss_pred             C-CCeeeEEEEEeCCccC
Q psy3954         246 G-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~  262 (268)
                      . ++++||++.+++.++.
T Consensus        76 ~~~~~~lG~~~i~l~~~~   93 (128)
T cd04024          76 FAGKDYLGEFDIALEEVF   93 (128)
T ss_pred             CCCCCcceEEEEEHHHhh
Confidence            8 8999999999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=1.3e-16  Score=121.85  Aligned_cols=83  Identities=20%  Similarity=0.392  Sum_probs=76.5

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|+|+|+ +|++|+  +. +.+| ||+     +..+|++++++.||+|||+|.|.++.....|.|+|||++ .+++|++
T Consensus         2 G~L~V~Vi-~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d-~~~~dd~   78 (145)
T cd04038           2 GLLKVRVV-RGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKD-TFSKDDS   78 (145)
T ss_pred             eEEEEEEE-eeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECC-CCCCCCE
Confidence            78999999 999998  55 7889 998     889999999999999999999999888889999999999 7889999


Q ss_pred             eEEEEEeccccccc
Q psy3954         126 LGKVTIQRSDLHRI  139 (268)
Q Consensus       126 iG~~~i~l~~l~~~  139 (268)
                      ||++.+++.++...
T Consensus        79 iG~a~i~l~~l~~~   92 (145)
T cd04038          79 MGEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEEEHHHhhhh
Confidence            99999999988743

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.69  E-value=2.8e-16  Score=118.64  Aligned_cols=96  Identities=19%  Similarity=0.458  Sum_probs=84.4

Q ss_pred             eEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCC
Q psy3954          54 GTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDR  118 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~  118 (268)
                      +.|+|+|+ +|++|+  +..+.+| ||+          ..+||++++++.||.|||+|.|.+...  ...|.|+|||.+ 
T Consensus        13 ~~l~v~i~-~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~-   90 (131)
T cd04026          13 NKLTVEVR-EAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD-   90 (131)
T ss_pred             CEEEEEEE-EeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence            68999999 999999  6678899 998          368999999999999999999997764  578999999999 


Q ss_pred             CCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954         119 TSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       119 ~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      ..+++++||++.++++++... ..+.|++|....
T Consensus        91 ~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~  123 (131)
T cd04026          91 RTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE  123 (131)
T ss_pred             CCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence            778899999999999999744 678999996644

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.69  E-value=2.9e-16  Score=117.61  Aligned_cols=90  Identities=26%  Similarity=0.383  Sum_probs=75.4

Q ss_pred             CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      ..|.|.|++|+||+.. +.+||||++.+. +   .+..+|++. ++.||.|||.|.|.+....+..+.|.|||++.. ++
T Consensus         4 ~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~-~---~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d   77 (126)
T cd08400           4 RSLQLNVLEAHKLPVK-HVPHPYCVISLN-E---VKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD   77 (126)
T ss_pred             eEEEEEEEEeeCCCCC-CCCCeeEEEEEC-C---EeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence            4689999999999864 578999999996 1   344678875 589999999999987665556699999999888 99


Q ss_pred             eeeEEEEEeCCccCCCC
Q psy3954         249 VFLGEVHIPLNNKETSS  265 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~~~  265 (268)
                      ++||++.++++++..+.
T Consensus        78 ~~iG~v~i~l~~l~~~~   94 (126)
T cd08400          78 SEIAEVTVQLSKLQNGQ   94 (126)
T ss_pred             CeEEEEEEEHhHccCCC
Confidence            99999999999887643

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=2.4e-16  Score=120.96  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=75.7

Q ss_pred             eEEEEEceecC--CC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC------Cce--EEE
Q psy3954         171 SLMVNVNEASG--LT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD------PIE--LVV  238 (268)
Q Consensus       171 ~L~v~v~~a~~--L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~------~~~--l~i  238 (268)
                      ...++|..|++  |+  +.++.+||||++++........+.+|+++++|+||+|||+|.|.++...      +..  |.|
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            35667777777  45  3466799999999854445577899999999999999999999996542      333  999


Q ss_pred             EEEecCCC--CCeeeEEEEEeCCccCC
Q psy3954         239 SLHHDISG--LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       239 ~V~d~~~~--~~~~lG~~~l~l~~~~~  263 (268)
                      +|||++.+  +|++||++.++|+.+..
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~  109 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLET  109 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccc
Confidence            99999886  79999999999999854

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=1.8e-16  Score=121.03  Aligned_cols=87  Identities=23%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      |.|.|.|++|++|+  +. +.+||||++.+.     ..+++|++++++.||+|||.|.|.++.. ...|.|+|||++.+ 
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~   74 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFS   74 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCC
Confidence            67999999999996  44 779999999997     5679999999999999999999998654 33499999999988 


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      ++++||++.+++..+..
T Consensus        75 ~dd~iG~a~i~l~~l~~   91 (145)
T cd04038          75 KDDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCCEEEEEEEEHHHhhh
Confidence            89999999999988754

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.68  E-value=3.4e-16  Score=120.28  Aligned_cols=93  Identities=25%  Similarity=0.435  Sum_probs=81.2

Q ss_pred             ccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-E---------------------------------EeeecccCCCCC
Q psy3954          49 IIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-Q---------------------------------ILNSPSVNPVTS   91 (268)
Q Consensus        49 ~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-~---------------------------------~~~T~~~~~t~n   91 (268)
                      ..+..+.|.|+|+ +|++|+  +..|.+| ||+ .                                 .++|+++++++|
T Consensus        23 ~~~~~~~L~V~vi-~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          23 AEPPIFVLKVTVI-EAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             cCCCeEEEEEEEE-eccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            3455789999999 999998  7789999 998 1                                 268999999999


Q ss_pred             CccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          92 PFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        92 P~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      |.|||+|.|.+... ...|.|+|||.+     |++||++.++++++. ....+.|++|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            99999999998764 689999999987     779999999999998 4567999976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=2.1e-16  Score=119.99  Aligned_cols=96  Identities=20%  Similarity=0.351  Sum_probs=83.5

Q ss_pred             EEEEEEcccCccc-cCCCCCC-ceE---------EEeeecccCCCCCCccCcEEEEEecCC----------------CcE
Q psy3954          56 LRIRIQYTADHIL-QPHYYED-LCT---------QILNSPSVNPVTSPFFGEEFQFDIPRR----------------FRH  108 (268)
Q Consensus        56 L~V~v~~~a~~L~-~~~~~~d-yv~---------~~~~T~~~~~t~nP~wne~f~f~v~~~----------------~~~  108 (268)
                      |.|+|+ +|++|+ ...+.+| ||+         ..++|++++++.||.|||+|.|.+...                ...
T Consensus         1 L~V~Vi-~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVL-ECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEE-EccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            579999 999998 4367889 998         458999999999999999999997653                568


Q ss_pred             EEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954         109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus       109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      |.|+|||.+ ..+++++||++.+++.++........|++|.+...
T Consensus        80 l~i~V~d~~-~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~  123 (137)
T cd08675          80 LRVELWHAS-MVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA  123 (137)
T ss_pred             EEEEEEcCC-cCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence            999999999 67789999999999999987677899999988763

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.68  E-value=3e-16  Score=116.66  Aligned_cols=89  Identities=30%  Similarity=0.362  Sum_probs=76.5

Q ss_pred             CeEEEEEceecCCCCC--------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954         170 TSLMVNVNEASGLTQV--------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~--------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      |.|.|.|++|+||+..        .|.+||||++.+.     ...++|++++++.||.|||.|.|.+.......|.|+||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~   75 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-----AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELF   75 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-----CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEE
Confidence            5689999999999732        2579999999987     46789999999999999999999986544445999999


Q ss_pred             ecCCCCCeeeEEEEEeCCccCC
Q psy3954         242 HDISGLNVFLGEVHIPLNNKET  263 (268)
Q Consensus       242 d~~~~~~~~lG~~~l~l~~~~~  263 (268)
                      |++..++++||++.++++++..
T Consensus        76 d~~~~~~~~iG~~~i~l~~l~~   97 (121)
T cd08391          76 DEDPDKDDFLGRLSIDLGSVEK   97 (121)
T ss_pred             ecCCCCCCcEEEEEEEHHHhcc
Confidence            9987788999999999988765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.68  E-value=4.8e-16  Score=116.47  Aligned_cols=88  Identities=22%  Similarity=0.382  Sum_probs=74.9

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCC
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGL  247 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~  247 (268)
                      ..++|+|++|++|+  +..|.+||||++.+.     ....+|++++++.||+|||.|.|.+... -..|.|+|||++..+
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~   76 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLC   76 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCC
Confidence            46899999999997  456789999999886     4578999999999999999999987532 223999999998778


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      +++||++.+++++...
T Consensus        77 d~~lG~~~~~l~~~~~   92 (126)
T cd04046          77 DEFLGQATLSADPNDS   92 (126)
T ss_pred             CCceEEEEEecccCCC
Confidence            8999999999987654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.68  E-value=3.4e-16  Score=117.31  Aligned_cols=88  Identities=23%  Similarity=0.435  Sum_probs=75.3

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CCee
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LNVF  250 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~~~  250 (268)
                      |.|+|++|+||+...|.+||||++.+. +  ...+++|++++++.||+|||.|.|.+... -..|.|+|||++.. ++++
T Consensus         1 l~v~v~~A~~L~~~~g~~dpyv~v~~~-~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSEAAGSSNPYCVLEMD-E--PPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCCCCCCcCCEEEEEEC-C--CCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCce
Confidence            579999999998766789999999985 1  13468999999999999999999998532 33499999999988 8999


Q ss_pred             eEEEEEeCCccCC
Q psy3954         251 LGEVHIPLNNKET  263 (268)
Q Consensus       251 lG~~~l~l~~~~~  263 (268)
                      ||++.++++++..
T Consensus        77 lG~~~i~l~~l~~   89 (126)
T cd08678          77 LGLAIVPFDELRK   89 (126)
T ss_pred             EEEEEEeHHHhcc
Confidence            9999999998765

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.68  E-value=6e-16  Score=115.72  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=88.1

Q ss_pred             eEEEEEEEcccCccc-cCCCCCC-ceE-----E-EeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954          54 GTLRIRIQYTADHIL-QPHYYED-LCT-----Q-ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~-~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      ..|.|+|+ +|+.++ +..+.+| ||+     + ..+|+++++++||.|||+|.|.+.. .+.|.|+|||.+ ..+.|++
T Consensus         2 ~~L~V~i~-~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~-~~~~~~~   78 (125)
T cd04021           2 SQLQITVE-SAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHH-TLKADVL   78 (125)
T ss_pred             ceEEEEEE-eeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCC-CCCCCcE
Confidence            36899999 998444 5577889 998     3 7999999999999999999999865 489999999999 7888999


Q ss_pred             eEEEEEeccccccccC-----ccceecCcccCC-CcccceEEEEEE
Q psy3954         126 LGKVTIQRSDLHRISN-----KEHWFPLTPVTQ-DSEVQGKIQIGV  165 (268)
Q Consensus       126 iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~-~~~~~G~i~v~l  165 (268)
                      ||++.++++++.....     ...|+++..... .....|+|.+.+
T Consensus        79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            9999999999874332     235888865442 345679988765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.67  E-value=4.9e-16  Score=112.99  Aligned_cols=83  Identities=19%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEec-------C
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD-------I  244 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~-------~  244 (268)
                      |.|+|.+|+||+   +.+||||++.+...+....+.+|+++++++||+|||.|.|.+.  .-..|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc
Confidence            679999999995   5689999999874333346799999999999999999999985  233599999998       3


Q ss_pred             CC-CCeeeEEEEEeCC
Q psy3954         245 SG-LNVFLGEVHIPLN  259 (268)
Q Consensus       245 ~~-~~~~lG~~~l~l~  259 (268)
                      .. +|+++|.+.+.|+
T Consensus        76 ~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          76 GEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccCcccEEEEEEEEEC
Confidence            45 8999988888764

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>KOG0696|consensus

Probab=99.67  E-value=3.3e-17  Score=140.24  Aligned_cols=93  Identities=19%  Similarity=0.457  Sum_probs=83.5

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d  117 (268)
                      ...|.|+|. +|+||.  |.+|.+| ||+          .+++|++++.++||+|||+|.|.+.+.  +..|.++|||+|
T Consensus       179 ~~~l~v~i~-ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  179 RDVLTVTIK-EAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             CceEEEEeh-hhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            357899999 999997  9999999 998          688999999999999999999998877  789999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecC
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                       .-++++|+|..++.+++|. ..+.+.|+.|
T Consensus       258 -rTsRNDFMGslSFgisEl~-K~p~~GWyKl  286 (683)
T KOG0696|consen  258 -RTSRNDFMGSLSFGISELQ-KAPVDGWYKL  286 (683)
T ss_pred             -ccccccccceecccHHHHh-hcchhhHHHH
Confidence             6889999999999999997 3456778766

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.67  E-value=5.6e-16  Score=119.08  Aligned_cols=97  Identities=31%  Similarity=0.464  Sum_probs=77.6

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc------------------------ceeeeceeccCCCCCccce
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK------------------------SDVQKSKVKKKSHSPVFNE  222 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~------------------------~~~~kT~v~~~t~nP~~ne  222 (268)
                      .+.|.|+|++|++|+  +..|.+||||++.+......                        ...++|+++++++||.|||
T Consensus        27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE  106 (153)
T cd08676          27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE  106 (153)
T ss_pred             eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence            467889999999996  56788999999998632211                        1347899999999999999


Q ss_pred             EEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCC-CCCCC
Q psy3954         223 SFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKET-SSSWW  268 (268)
Q Consensus       223 ~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~-~~~~w  268 (268)
                      +|.|.+.......|.|+|||++   +++||++.++++++.. +...|
T Consensus       107 ~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~~d~W  150 (153)
T cd08676         107 TFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCGLDSW  150 (153)
T ss_pred             EEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCCCCCCe
Confidence            9999986433334999999986   8999999999999873 44444

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.66  E-value=5.5e-16  Score=115.16  Aligned_cols=90  Identities=22%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             EEceecCCC--CCCCCCCCEEEEEEEecC--CcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC----C
Q psy3954         175 NVNEASGLT--QVNGQCDPTAMVTVHYTH--NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS----G  246 (268)
Q Consensus       175 ~v~~a~~L~--~~~g~~dpyv~v~l~~~~--~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~----~  246 (268)
                      ..++|++|+  +..|.+||||++++....  .....++|++++++.||+|||+|.|.+..+....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            458899997  556789999999998443  23457899999999999999999998765555559999999997    6


Q ss_pred             -CCeeeEEEEEeCCccCCC
Q psy3954         247 -LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~~  264 (268)
                       ++++||++.++++++..+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~  103 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSS  103 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence             999999999999998754

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.66  E-value=7.3e-16  Score=112.88  Aligned_cols=92  Identities=25%  Similarity=0.365  Sum_probs=78.3

Q ss_pred             CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEecccccc-cc
Q psy3954          70 PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR-IS  140 (268)
Q Consensus        70 ~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~-~~  140 (268)
                      .+|.+| ||+      ..++|++++++.||+|||.|.|.+.+. .+.|.|+|+|.+ .. +|++||++.++|+++.. ..
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~-~~-~d~~iG~~~v~L~~l~~~~~   86 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR-DR-HDPVLGSVSISLNDLIDATS   86 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC-CC-CCCeEEEEEecHHHHHhhhh
Confidence            467889 999      357999999999999999999998876 688999999999 77 89999999999999853 34


Q ss_pred             CccceecCcccCCCcccceEEEEEEEEc
Q psy3954         141 NKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       141 ~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ..+.|++|.+.     ..|+|++++.|.
T Consensus        87 ~~~~w~~L~~~-----~~G~i~~~~~~~  109 (111)
T cd04052          87 VGQQWFPLSGN-----GQGRIRISALWK  109 (111)
T ss_pred             ccceeEECCCC-----CCCEEEEEEEEe
Confidence            46899999752     369999998874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.66  E-value=6.1e-16  Score=115.52  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=71.4

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCc
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~  124 (268)
                      |+|.|+ +|++|+  +..+.+| ||+       ...||+++++++||+|||+|.|.+... ...|.|+|||++ ..++|+
T Consensus         2 lrV~Vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d-~~~~dd   79 (124)
T cd04037           2 VRVYVV-RARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD-LLGSDD   79 (124)
T ss_pred             EEEEEE-ECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC-CCCCCc
Confidence            789999 999999  7778999 998       235788899999999999999997654 689999999999 788999


Q ss_pred             eeEEEEEecccccc
Q psy3954         125 VLGKVTIQRSDLHR  138 (268)
Q Consensus       125 ~iG~~~i~l~~l~~  138 (268)
                      +||++.+++++...
T Consensus        80 ~iG~~~i~l~~~~~   93 (124)
T cd04037          80 LIGETVIDLEDRFF   93 (124)
T ss_pred             eeEEEEEeeccccc
Confidence            99999999997763

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.66  E-value=1e-15  Score=115.84  Aligned_cols=92  Identities=28%  Similarity=0.415  Sum_probs=76.5

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEec--CCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYT--HNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~--~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      |.|+|++|++|+  +..|.+||||++.+...  +......+|++++++.||.|||+|.|.+... ...|.|+|||++.. 
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~   80 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT   80 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence            789999999997  44677999999999732  1123467999999999999999999998643 23499999999988 


Q ss_pred             CCeeeEEEEEeCCccCCC
Q psy3954         247 LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~~  264 (268)
                      ++++||++.++++++..+
T Consensus        81 ~~~~iG~~~i~l~~l~~~   98 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTE   98 (133)
T ss_pred             CCCeeEEEEEEHHHCCCc
Confidence            899999999999998763

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.66  E-value=1e-15  Score=114.87  Aligned_cols=92  Identities=24%  Similarity=0.387  Sum_probs=76.4

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC--
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG--  246 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~--  246 (268)
                      .|.|.|++|++|+  +..|.+||||++.+.     ....+|++++++.||.|||.|.|.+... ...|.|+|||++..  
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~   75 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIK   75 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcc
Confidence            6899999999997  556779999999985     3568999999999999999999987533 23499999998741  


Q ss_pred             ----------CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 ----------LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 ----------~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                                .+++||++.+++.++..+...|
T Consensus        76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w  107 (127)
T cd04027          76 SRLKQKFTRESDDFLGQTIIEVRTLSGEMDVW  107 (127)
T ss_pred             cccceeccccCCCcceEEEEEhHHccCCCCeE
Confidence                      6899999999999887655444

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.65  E-value=1.5e-15  Score=113.76  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=75.7

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      .|+|+|++|++|+  +..+.+||||++.+..  ......+|++++++.||.|||+|.|.+.......|.|+|||++.. +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~--~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~   79 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTN--GKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK   79 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECC--CCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence            5889999999997  4567799999998752  223468999999999999999999998765334499999999988 8


Q ss_pred             CeeeEEEEEeCCccC
Q psy3954         248 NVFLGEVHIPLNNKE  262 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~  262 (268)
                      +++||++.+++..+.
T Consensus        80 ~~~iG~~~i~l~~~~   94 (126)
T cd04043          80 HDLCGRASLKLDPKR   94 (126)
T ss_pred             CceEEEEEEecCHHH
Confidence            999999999998753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.65  E-value=1.3e-15  Score=113.38  Aligned_cols=87  Identities=16%  Similarity=0.276  Sum_probs=74.0

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      |.|.|++|++|+  +..|.+||||++.+. +   ....+|++++++.||.|||.|.|.+... ...|.|.|||++.. ++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~---~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d   76 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD-N---EVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRD   76 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC-C---EeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCC
Confidence            789999999997  567789999999985 1   2357999999999999999999988542 23499999999988 89


Q ss_pred             eeeEEEEEeCCccCC
Q psy3954         249 VFLGEVHIPLNNKET  263 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~  263 (268)
                      ++||++.++++.+..
T Consensus        77 ~~iG~~~~~~~~~~~   91 (121)
T cd04054          77 DVIGKVSLTREVISA   91 (121)
T ss_pred             CEEEEEEEcHHHhcc
Confidence            999999999887754

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.65  E-value=1.6e-15  Score=113.27  Aligned_cols=89  Identities=27%  Similarity=0.362  Sum_probs=75.9

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCC---ceEEEEEEec
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDP---IELVVSLHHD  243 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~---~~l~i~V~d~  243 (268)
                      |.|.|+|++|++|+  +..+.+||||++.+.     ...++|++.++ +.||.|||.|.|.+.....   ..|.|+|||.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   75 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK   75 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence            57999999999997  456779999999986     45678888874 8999999999999877632   3399999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +.+ ++++||++.+++.++..
T Consensus        76 ~~~~~d~~iG~~~i~l~~l~~   96 (124)
T cd04049          76 DNFSDDDFIGEATIHLKGLFE   96 (124)
T ss_pred             ccCCCCCeEEEEEEEhHHhhh
Confidence            988 89999999999999865

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.65  E-value=1.7e-15  Score=117.65  Aligned_cols=91  Identities=23%  Similarity=0.292  Sum_probs=75.5

Q ss_pred             CCeEEEEEceecCCCC--------------------------------CCCCCCCEEEEEEEecCCcceeeeceeccCCC
Q psy3954         169 PTSLMVNVNEASGLTQ--------------------------------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH  216 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~--------------------------------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~  216 (268)
                      -|.|.|+|++|++|++                                ..|.+||||++.+. +   ....+|++++++.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~-~---~~~~rT~v~~~~~   81 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA-G---ARVARTRVIENSE   81 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC-C---eEeeEEEEeCCCC
Confidence            4789999999999973                                23458999999986 1   2346999999999


Q ss_pred             CCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCC
Q psy3954         217 SPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       217 nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~  264 (268)
                      ||+|||+|.|.+... ...|.|+|||++..++++||++.++++++..+
T Consensus        82 nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g  128 (158)
T cd04015          82 NPVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG  128 (158)
T ss_pred             CCccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCC
Confidence            999999999987543 34599999999877778999999999998764

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.65  E-value=6e-16  Score=114.95  Aligned_cols=88  Identities=17%  Similarity=0.215  Sum_probs=76.5

Q ss_pred             ccCccc--cCCCCCC-ceE-----E-------EeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCC----CCC
Q psy3954          63 TADHIL--QPHYYED-LCT-----Q-------ILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRT----SKT  122 (268)
Q Consensus        63 ~a~~L~--~~~~~~d-yv~-----~-------~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~----~~~  122 (268)
                      +|++|+  +..+.+| ||+     .       .+||+++++++||+|||+|.|.+..+ ...|.|+|||++ .    .++
T Consensus         8 ~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d-~~~~~~~~   86 (120)
T cd04048           8 SCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVD-SKSKDLSD   86 (120)
T ss_pred             EccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEec-CCcCCCCC
Confidence            799998  7778899 998     2       48999999999999999999986544 678999999999 6    788


Q ss_pred             CceeEEEEEeccccccccCccceecCccc
Q psy3954         123 DRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      +++||++.+++.++........|++|.+.
T Consensus        87 ~d~iG~~~i~l~~l~~~~~~~~~~~l~~~  115 (120)
T cd04048          87 HDFLGEAECTLGEIVSSPGQKLTLPLKGG  115 (120)
T ss_pred             CcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence            99999999999999877777888888543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.65  E-value=1e-15  Score=111.25  Aligned_cols=73  Identities=25%  Similarity=0.457  Sum_probs=64.2

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeC-------C
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR-------D  117 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~-------d  117 (268)
                      |.|+|+ +|+||+   +.+| ||+          .++||+++++|+||+|||+|.|.++. ...|++.|||+       |
T Consensus         1 L~V~V~-~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVH-SAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEE-eCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            679999 999997   5689 999          35899999999999999999999975 68999999998       4


Q ss_pred             CCCCCCceeEEEEEecc
Q psy3954         118 RTSKTDRVLGKVTIQRS  134 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~  134 (268)
                       ..+.|+++|++.+.|.
T Consensus        76 -~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          76 -GEGTDAIMGKGQIQLD   91 (118)
T ss_pred             -ccCcccEEEEEEEEEC
Confidence             5678999998888765

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.5e-15  Score=112.70  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      |.|.|+|++|++|+  +..+.+||||++.+. +   ....+|++++++.||.|||.|.|.+.... ..|.|+|||++.. 
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~-~---~~~~kT~~~~~t~~P~Wne~f~~~v~~~~-~~L~v~v~d~~~~~   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN-G---IVKGRTVTISNTLNPVWDEVLYVPVTSPN-QKITLEVMDYEKVG   75 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC-C---EEeeceeEECCCcCCccCceEEEEecCCC-CEEEEEEEECCCCC
Confidence            57899999999997  456789999999985 1   35689999999999999999999876532 3599999999988 


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      ++++||++.+++.++..
T Consensus        76 ~d~~IG~~~~~l~~l~~   92 (120)
T cd04045          76 KDRSLGSVEINVSDLIK   92 (120)
T ss_pred             CCCeeeEEEEeHHHhhC
Confidence            89999999999988865

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.64  E-value=2e-15  Score=114.56  Aligned_cols=91  Identities=44%  Similarity=0.691  Sum_probs=76.8

Q ss_pred             EEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-------------CCce--
Q psy3954         172 LMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-------------DPIE--  235 (268)
Q Consensus       172 L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-------------~~~~--  235 (268)
                      |.|.|++|++|+.. .|.+||||++++... ....+++|++++++.||.|||+|.|.+...             ++..  
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999754 677999999999732 335678999999999999999999998654             2233  


Q ss_pred             EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         236 LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      |.|+|||++.. ++++||++.+++.++..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~  108 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQ  108 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence            99999999988 99999999999999765

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.64  E-value=2.8e-15  Score=113.31  Aligned_cols=90  Identities=17%  Similarity=0.262  Sum_probs=74.7

Q ss_pred             EEEEEceecCCC-CCCCCCCCEEEEEEEecCCc--------ceeeeceeccCCCCCcc-ceEEEEEccCCCCceEEEEEE
Q psy3954         172 LMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNK--------SDVQKSKVKKKSHSPVF-NESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       172 L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~--------~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      ..|++++|+||+ +..|.+||||++.+..+...        .++++|+++++++||+| ||.|.|.+...  +.|.|+||
T Consensus         3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~--~~L~v~V~   80 (137)
T cd08691           3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT--DVLEIEVK   80 (137)
T ss_pred             EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC--CEEEEEEE
Confidence            578999999997 56788999999999744332        35799999999999999 99999998533  24999999


Q ss_pred             ecCCC-C---CeeeEEEEEeCCccCC
Q psy3954         242 HDISG-L---NVFLGEVHIPLNNKET  263 (268)
Q Consensus       242 d~~~~-~---~~~lG~~~l~l~~~~~  263 (268)
                      |++.. +   +++||++.++++++..
T Consensus        81 D~~~~~~~~~~d~lG~~~i~l~~l~~  106 (137)
T cd08691          81 DKFAKSRPIIRRFLGKLSIPVQRLLE  106 (137)
T ss_pred             ecCCCCCccCCceEEEEEEEHHHhcc
Confidence            97654 2   7999999999999864

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.64  E-value=2.3e-15  Score=112.41  Aligned_cols=91  Identities=21%  Similarity=0.319  Sum_probs=77.0

Q ss_pred             CeEEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         170 TSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      |.|.|+|++|++|+.   ..+.+||||++.+..+   ...++|++++++.||.|||.|.|.+. ..-+.|.|+|||++..
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~   77 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK   77 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC
Confidence            679999999999983   2456899999999721   36789999999999999999999887 2233499999999888


Q ss_pred             -CCeeeEEEEEeCCccCCC
Q psy3954         247 -LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~~  264 (268)
                       ++++||++.+++.++...
T Consensus        78 ~~d~~iG~~~~~l~~l~~~   96 (124)
T cd04044          78 RKDKLIGTAEFDLSSLLQN   96 (124)
T ss_pred             CCCceeEEEEEEHHHhccC
Confidence             899999999999998763

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.63  E-value=2.2e-15  Score=112.34  Aligned_cols=87  Identities=25%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      .|.|+|++|++|+  +..+.+||||++++. +   ...++|++++++.||.|||.|.|.+..  ...|.|+|||++.. +
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~-~---~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~   74 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD-G---GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKK   74 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEEC-C---ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCC
Confidence            3789999999997  556779999999985 2   456899999999999999999999864  23499999999887 3


Q ss_pred             --CeeeEEEEEeCCccCC
Q psy3954         248 --NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 --~~~lG~~~l~l~~~~~  263 (268)
                        +++||++.++++++..
T Consensus        75 ~~d~~lG~~~i~l~~l~~   92 (123)
T cd08382          75 KDQGFLGCVRIRANAVLP   92 (123)
T ss_pred             CCCceEeEEEEEHHHccc
Confidence              5899999999999854

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.63  E-value=2e-15  Score=113.25  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=72.8

Q ss_pred             EceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC--CceEEEEEEecCCC-CCeeeE
Q psy3954         176 VNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVSLHHDISG-LNVFLG  252 (268)
Q Consensus       176 v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~--~~~l~i~V~d~~~~-~~~~lG  252 (268)
                      |++|++|+...|.+||||++++.     ..+++|++++++.||+|||.|.|.+....  ...|.|+|||++.. ++++||
T Consensus         2 vi~a~~L~~~~g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPGLKGKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcccCCCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence            78999998877789999999996     45689999999999999999999986542  22399999999988 899999


Q ss_pred             EEEEeCCccCCC
Q psy3954         253 EVHIPLNNKETS  264 (268)
Q Consensus       253 ~~~l~l~~~~~~  264 (268)
                      ++.++++++..+
T Consensus        77 ~~~~~l~~l~~~   88 (127)
T cd08373          77 SATVSLQDLVSE   88 (127)
T ss_pred             EEEEEhhHcccC
Confidence            999999988653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.63  E-value=3.8e-15  Score=138.40  Aligned_cols=95  Identities=20%  Similarity=0.347  Sum_probs=82.9

Q ss_pred             CCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccc
Q psy3954          72 YYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEH  144 (268)
Q Consensus        72 ~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~  144 (268)
                      +++| ||+      .+.||+++++++||+|||+|.|.+......|.|+|+|.| .++ +++||++.||++++..+...+.
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D-~~g-aD~IG~a~IPL~~L~~Ge~vd~  152 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDD-VFG-AQIIGTAKIPVRDIASGERISG  152 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCC-ccC-CceeEEEEEEHHHcCCCCceEE
Confidence            4679 999      467999999999999999999999987789999999999 787 5799999999999998888999


Q ss_pred             eecCcccCCC-cccceEEEEEEEEc
Q psy3954         145 WFPLTPVTQD-SEVQGKIQIGVLST  168 (268)
Q Consensus       145 w~~L~~~~~~-~~~~G~i~v~l~~~  168 (268)
                      |++|...... ....|+|++++.|.
T Consensus       153 Wl~Ll~~~~kp~k~~~kl~v~lqf~  177 (868)
T PLN03008        153 WFPVLGASGKPPKAETAIFIDMKFT  177 (868)
T ss_pred             EEEccccCCCCCCCCcEEEEEEEEE
Confidence            9999765433 33458999999997

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.62  E-value=3.1e-15  Score=112.35  Aligned_cols=97  Identities=27%  Similarity=0.375  Sum_probs=80.3

Q ss_pred             CeEEEEEceecCCCC----CCCCCCCEEEEEEEecCC-cceeeeceeccCCC-CCccceEEEEEccCCCCceEEEEEEec
Q psy3954         170 TSLMVNVNEASGLTQ----VNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSH-SPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~----~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~-nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      ..|+|+|++|++|+.    ..+.+||||++++...+. ...+++|++++++. ||.|||+|.|.+...+...|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            368999999999974    356789999999975443 45678999988776 999999999998766655599999998


Q ss_pred             CCCCCeeeEEEEEeCCccCCCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~~~  266 (268)
                      +..++++||++.++++++..+..
T Consensus        82 ~~~~~~~iG~~~~~l~~l~~g~~  104 (128)
T cd00275          82 DSGDDDFLGQACLPLDSLRQGYR  104 (128)
T ss_pred             CCCCCcEeEEEEEEhHHhcCceE
Confidence            77688999999999999976543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.62  E-value=4.2e-15  Score=112.70  Aligned_cols=82  Identities=27%  Similarity=0.352  Sum_probs=69.3

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC-----CCC----ceEEE
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL-----GDP----IELVV  238 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~-----~~~----~~l~i  238 (268)
                      .+|+|.|++|++|+  +..|.+||||++.+.     ..+++|++++++.||.|||.|.|.+..     .++    ..|.|
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v   75 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV   75 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence            36899999999996  567889999999987     567899999999999999999997421     111    23999


Q ss_pred             EEEecCCC-CCeeeEEEEE
Q psy3954         239 SLHHDISG-LNVFLGEVHI  256 (268)
Q Consensus       239 ~V~d~~~~-~~~~lG~~~l  256 (268)
                      +|||++.. ++++||++.+
T Consensus        76 ~V~d~d~~~~d~~iG~~~i   94 (135)
T cd04017          76 ELFDQDSVGKDEFLGRSVA   94 (135)
T ss_pred             EEEeCcCCCCCccceEEEe
Confidence            99999988 8999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.61  E-value=3.8e-15  Score=109.80  Aligned_cols=89  Identities=31%  Similarity=0.345  Sum_probs=75.3

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      |.|.|++|++|+  +..+.+||||++.+. +   ...++|+++.++.+|.|||+|.|.+.......+.|+|||++.. ++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~-~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~   76 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN-G---EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKD   76 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC-C---CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCC
Confidence            578999999997  345679999999985 2   3457999999999999999999998755334499999999988 89


Q ss_pred             eeeEEEEEeCCccCCC
Q psy3954         249 VFLGEVHIPLNNKETS  264 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~~  264 (268)
                      ++||++.+++.++..+
T Consensus        77 ~~iG~~~~~l~~l~~~   92 (115)
T cd04040          77 DLLGSAYIDLSDLEPE   92 (115)
T ss_pred             CceEEEEEEHHHcCCC
Confidence            9999999999887664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.61  E-value=1.4e-14  Score=108.69  Aligned_cols=107  Identities=20%  Similarity=0.331  Sum_probs=86.5

Q ss_pred             EEEEEEEcccCccc--c--CCCCCC-ceE-E----------EeeecccCCCC-CCccCcEEEEEecCC-CcEEEEEEEeC
Q psy3954          55 TLRIRIQYTADHIL--Q--PHYYED-LCT-Q----------ILNSPSVNPVT-SPFFGEEFQFDIPRR-FRHLAVYAYDR  116 (268)
Q Consensus        55 ~L~V~v~~~a~~L~--~--~~~~~d-yv~-~----------~~~T~~~~~t~-nP~wne~f~f~v~~~-~~~l~~~v~d~  116 (268)
                      .|+|+|+ +|++|+  +  ..+.+| ||+ .          ..||+++.++. ||.|||+|.|.+... ...|.|+|||.
T Consensus         3 ~l~v~vi-~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           3 TLTIKII-SGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             EEEEEEE-eeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            6899999 999999  4  367888 998 1          26899988776 999999999997755 46799999999


Q ss_pred             CCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      + .. ++++||.+.++++++..   ...|++|..........|.|.+.+.+
T Consensus        82 ~-~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 D-SG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             C-CC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence            9 56 88999999999999853   34678887655444456899888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.60  E-value=8.6e-15  Score=110.60  Aligned_cols=89  Identities=24%  Similarity=0.369  Sum_probs=74.5

Q ss_pred             CCeEEEEEceecCCCC--C----------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceE
Q psy3954         169 PTSLMVNVNEASGLTQ--V----------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIEL  236 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~--~----------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l  236 (268)
                      .|.|.|+|++|++|+.  .          .|.+||||++.+. +   ....+|++++++.||.|||+|.|.+.  +...|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~-~---~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l   76 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD-D---THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNL   76 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC-C---EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEE
Confidence            3679999999999963  2          2568999999986 1   23468999999999999999999986  22349


Q ss_pred             EEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         237 VVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       237 ~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .|.|||++.. ++++||++.++|+++..
T Consensus        77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~  104 (132)
T cd04014          77 ELTVFHDAAIGPDDFVANCTISFEDLIQ  104 (132)
T ss_pred             EEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence            9999999887 89999999999998875

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.60  E-value=2.9e-15  Score=112.05  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=75.6

Q ss_pred             eEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCC----ceEEEEEEec
Q psy3954         171 SLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDP----IELVVSLHHD  243 (268)
Q Consensus       171 ~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~----~~l~i~V~d~  243 (268)
                      .|.|+|++|++|+.  ..+.+||||++++..    ..+++|++.. ++.||.|||.|.|.+....+    ..|.|+|||+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~   76 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE   76 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence            37899999999984  457799999999971    2567888875 58999999999999977653    3399999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +.+ ++++||++.+++.++..+
T Consensus        77 ~~~~~~~~lG~~~i~l~~l~~~   98 (125)
T cd04051          77 RPSLGDKLIGEVRVPLKDLLDG   98 (125)
T ss_pred             CCCCCCCcEEEEEEEHHHhhcc
Confidence            887 899999999999998763

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.59  E-value=1.3e-14  Score=106.15  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             EEEEceecCCC--CCCCCCCCEEEEEEEecC-CcceeeeceeccCCCCCccceEEEEEcc---CCCCce-EEEEEEecCC
Q psy3954         173 MVNVNEASGLT--QVNGQCDPTAMVTVHYTH-NKSDVQKSKVKKKSHSPVFNESFMFDRS---LGDPIE-LVVSLHHDIS  245 (268)
Q Consensus       173 ~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~-~~~~~~kT~v~~~t~nP~~ne~f~f~v~---~~~~~~-l~i~V~d~~~  245 (268)
                      .+..++|++|+  +..|.+||||++++.... .....++|++++++.||+|| .|.|.+.   ..+... |.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            45567999997  556789999999987332 23457999999999999999 6777643   222233 9999999998


Q ss_pred             C-CCeeeEEEEEeCCccCCC
Q psy3954         246 G-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~~  264 (268)
                      . ++++||++.++++++...
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcC
Confidence            8 899999999999988754

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.59  E-value=8.3e-15  Score=109.38  Aligned_cols=93  Identities=22%  Similarity=0.213  Sum_probs=77.7

Q ss_pred             eEEEEEceecCCC--C--CCCC--CCCEEEEEEEecCCcceeeeceeccCCCC--CccceEEEEEccC------------
Q psy3954         171 SLMVNVNEASGLT--Q--VNGQ--CDPTAMVTVHYTHNKSDVQKSKVKKKSHS--PVFNESFMFDRSL------------  230 (268)
Q Consensus       171 ~L~v~v~~a~~L~--~--~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~t~n--P~~ne~f~f~v~~------------  230 (268)
                      .|+|.|.+|+|++  +  ..|.  +||||++.+.+.  ...+++|.+..+++|  |.||++|.|++..            
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~   78 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK   78 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence            4789999999965  2  3553  999999999843  456799999999999  9999999998765            


Q ss_pred             ---------CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954         231 ---------GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       231 ---------~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~  265 (268)
                               +.+..  |.++|||.|.+ +|++||++.++|..+..+.
T Consensus        79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     33333  99999999999 9999999999999987643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.58  E-value=2.2e-14  Score=106.03  Aligned_cols=91  Identities=24%  Similarity=0.378  Sum_probs=73.8

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-~~  248 (268)
                      |.|+|++|++|+.. |.+||||++.+. +   ...++|+++++ .||.|||+|.|.++..++..  |.|.+||.+.. ++
T Consensus         2 L~v~vi~a~~l~~~-~~~dpyv~v~~~-~---~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~   75 (117)
T cd08383           2 LRLRILEAKNLPSK-GTRDPYCTVSLD-Q---VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD   75 (117)
T ss_pred             eEEEEEEecCCCcC-CCCCceEEEEEC-C---EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence            78999999999876 889999999996 1   24578999988 99999999999998766554  88889998776 77


Q ss_pred             eeeEEEEEeCCccCCCCCCC
Q psy3954         249 VFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..+|.+.|...........|
T Consensus        76 ~~~g~v~l~~~~~~~~~~~w   95 (117)
T cd08383          76 IVIGKVALSKLDLGQGKDEW   95 (117)
T ss_pred             eEEEEEEecCcCCCCcceeE
Confidence            88898887766665544444

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.57  E-value=1.5e-14  Score=100.16  Aligned_cols=82  Identities=33%  Similarity=0.414  Sum_probs=71.7

Q ss_pred             EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      |.|.|++|++|+.  ..+.+|||+++.+.....  ..++|++++++.+|.|||.|.|.+.....+.|.|+|||++.. ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~   78 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD   78 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence            6899999999984  466799999999983222  679999999999999999999998877777799999999988 79


Q ss_pred             eeeEEEE
Q psy3954         249 VFLGEVH  255 (268)
Q Consensus       249 ~~lG~~~  255 (268)
                      ++||++.
T Consensus        79 ~~iG~~~   85 (85)
T PF00168_consen   79 ELIGEVK   85 (85)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEC
Confidence            9999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.53  E-value=2.4e-14  Score=144.22  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=94.9

Q ss_pred             CCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCCCCC
Q psy3954          51 QDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~~~  121 (268)
                      .-.|.|.|+|+ +|.||.+..+.+| ||+      ++.||++++++.||+|||+|+|.+...  ++.|.|+|||+| .++
T Consensus      1977 ~~~G~L~V~V~-~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d-~f~ 2054 (2102)
T PLN03200       1977 CLPGSLTVTIK-RGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN-TFG 2054 (2102)
T ss_pred             hCCcceEEEEe-eccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC-ccC
Confidence            44799999999 9999995567889 999      377899999999999999999776665  688999999999 886


Q ss_pred             CCceeEEEEEeccccccccCccceecCcccCCCcccceE---EEEEEEEc
Q psy3954         122 TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGK---IQIGVLST  168 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~---i~v~l~~~  168 (268)
                      +| .+|++.|++.++........||+|.+....   .|+   |++.+.|.
T Consensus      2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CC-CCceEEEEHHHHhcCceeeeeeecCccccc---CCCcceEEEEEEec
Confidence            55 899999999999988889999999863222   466   88887763

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.53  E-value=8.1e-14  Score=104.19  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=73.1

Q ss_pred             CeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954         170 TSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L  247 (268)
Q Consensus       170 ~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~  247 (268)
                      ..|.|+|.+|+.+. +..+.+||||++++. +   ....+|++++++.||.|||.|.|.+..  .+.|.|+|||++.. +
T Consensus         2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~---~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~   75 (125)
T cd04021           2 SQLQITVESAKLKSNSKSFKPDPYVEVTVD-G---QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKA   75 (125)
T ss_pred             ceEEEEEEeeECCCCCcCCCCCeEEEEEEC-C---cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCC
Confidence            46899999998443 346679999999986 1   136899999999999999999998753  24599999999988 8


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      +++||++.+++.++..
T Consensus        76 ~~~iG~~~i~l~~l~~   91 (125)
T cd04021          76 DVLLGEASLDLSDILK   91 (125)
T ss_pred             CcEEEEEEEEHHHhHh
Confidence            9999999999988754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.45  E-value=3.7e-13  Score=98.36  Aligned_cols=74  Identities=14%  Similarity=0.294  Sum_probs=64.0

Q ss_pred             ccCccc--cCCCCCC-ceE-----E------EeeecccCCCCCCccCcEEEEEecC---C--CcEEEEEEEeCCCCCCCC
Q psy3954          63 TADHIL--QPHYYED-LCT-----Q------ILNSPSVNPVTSPFFGEEFQFDIPR---R--FRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        63 ~a~~L~--~~~~~~d-yv~-----~------~~~T~~~~~t~nP~wne~f~f~v~~---~--~~~l~~~v~d~d~~~~~d  123 (268)
                      +|++|+  +..+.+| ||+     .      .++|+++++++||+|| +|.|.+..   .  ...|.|+|||++ ..++|
T Consensus         8 ~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d-~~~~d   85 (110)
T cd04047           8 SGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD-SSGKH   85 (110)
T ss_pred             EeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC-CCCCC
Confidence            799998  7788999 998     1      4899999999999999 78887432   1  579999999999 78899


Q ss_pred             ceeEEEEEecccccc
Q psy3954         124 RVLGKVTIQRSDLHR  138 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~  138 (268)
                      ++||++.++++++..
T Consensus        86 ~~iG~~~~~l~~l~~  100 (110)
T cd04047          86 DLIGEFETTLDELLK  100 (110)
T ss_pred             cEEEEEEEEHHHHhc
Confidence            999999999999873

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.45  E-value=3.1e-13  Score=93.52  Aligned_cols=73  Identities=21%  Similarity=0.415  Sum_probs=64.2

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d  123 (268)
                      |.|+|+ +|++|+  +..+..| ||+        ..++|++++++.+|.|||+|.|.+... ...|.|+|||.+ ..++|
T Consensus         1 L~v~I~-~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~-~~~~~   78 (85)
T PF00168_consen    1 LTVTIH-SARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD-SFGKD   78 (85)
T ss_dssp             EEEEEE-EEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET-SSSSE
T ss_pred             CEEEEE-EEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC-CCCCC
Confidence            789999 999999  5677888 998        459999999999999999999996655 566999999999 78889


Q ss_pred             ceeEEEE
Q psy3954         124 RVLGKVT  130 (268)
Q Consensus       124 ~~iG~~~  130 (268)
                      ++||++.
T Consensus        79 ~~iG~~~   85 (85)
T PF00168_consen   79 ELIGEVK   85 (85)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEC
Confidence            9999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1326|consensus

Probab=99.43  E-value=2.8e-14  Score=132.58  Aligned_cols=89  Identities=25%  Similarity=0.308  Sum_probs=73.7

Q ss_pred             EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      .+|.|.+|-+|.  |.+|.+||||++.++   +....-+...+.+++||+|++.|++.+..+....+.+.|||+|.. ++
T Consensus       615 vrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  615 VRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             EEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            568888999994  788999999999997   112236778899999999999999887666555699999999999 89


Q ss_pred             eeeEEEEEeCCccCC
Q psy3954         249 VFLGEVHIPLNNKET  263 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~  263 (268)
                      +.||+..++|+.-..
T Consensus       692 ~~iget~iDLEnR~~  706 (1105)
T KOG1326|consen  692 EKIGETTIDLENRWL  706 (1105)
T ss_pred             chhhceehhhhhccc
Confidence            999999999876543

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.42  E-value=9e-13  Score=98.46  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             EEEEEEEcccCccc----cCCC--CCC-ceE--------EEeeecccCCCCC--CccCcEEEEEecC-------------
Q psy3954          55 TLRIRIQYTADHIL----QPHY--YED-LCT--------QILNSPSVNPVTS--PFFGEEFQFDIPR-------------  104 (268)
Q Consensus        55 ~L~V~v~~~a~~L~----~~~~--~~d-yv~--------~~~~T~~~~~t~n--P~wne~f~f~v~~-------------  104 (268)
                      .|+|.|. +|++++    +..|  ++| ||+        .+++|.+.++++|  |.||+.|.|.++.             
T Consensus         1 eLRViIw-~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVW-NTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEE-ECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            3899999 999976    2244  599 999        5689999999999  9999999998666             


Q ss_pred             --------C---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc
Q psy3954         105 --------R---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI  139 (268)
Q Consensus       105 --------~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~  139 (268)
                              +   ...|.++|||.| .+++|++||++.++|..+..+
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D-~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDND-KFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECc-ccCCCCcceEEEEEhhhcccc
Confidence                    2   578999999999 899999999999999988643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.40  E-value=3.5e-12  Score=90.66  Aligned_cols=94  Identities=28%  Similarity=0.412  Sum_probs=77.8

Q ss_pred             EEEEEceecCCCCCC--CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLTQVN--GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~~~~--g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      +.+.|++|++|....  +..+|||++.+...+  ....+|++..++.||.|||.|.|.+.......|.|+|||.+.. ++
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~   79 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD   79 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence            679999999997433  468999999998221  3578999999999999999999998765544499999999877 79


Q ss_pred             eeeEEEEEeCCccCCCCCC
Q psy3954         249 VFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       249 ~~lG~~~l~l~~~~~~~~~  267 (268)
                      .++|.+.+++.++..+..+
T Consensus        80 ~~~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       80 DFIGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             ceeEEEEEEHHHcccCccc
Confidence            9999999999999886544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02952 phosphoinositide phospholipase C

Probab=99.40  E-value=2.9e-12  Score=117.08  Aligned_cols=143  Identities=15%  Similarity=0.169  Sum_probs=102.1

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccc---------ccccCCCeEEEEEEEcccCccc-cC-------CCCCC-ceE
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTA---------NQIIQDLGTLRIRIQYTADHIL-QP-------HYYED-LCT   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~---------~~~~~~~~~L~V~v~~~a~~L~-~~-------~~~~d-yv~   78 (268)
                      ..++|++.|.-+.-+   .|.++|......         ....+....|.|+|+ +|.+|+ +.       ....| ||+
T Consensus       427 ~m~lN~g~F~~NG~c---GYVlKP~~lr~~~~~~~~fdp~~~~~~~~~L~V~Vi-sGq~l~lp~~~~~~~~~~~~D~yV~  502 (599)
T PLN02952        427 SLWLMHGMFRANGGC---GYLKKPDFLMKKGFHDEVFDPKKKLPVKKTLKVKVY-LGDGWRLDFSHTHFDSYSPPDFYTK  502 (599)
T ss_pred             HHHhhhchhccCCCC---CceECCHHHcccCCcccccCCCCCCCccceEEEEEE-ECcccCCCCccccCCccCCCCceEE
Confidence            356788888754432   899999765432         111223468999999 999986 21       12347 887


Q ss_pred             ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954          79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP  147 (268)
Q Consensus        79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~  147 (268)
                                .+.+|+++.++.||+|||+|.|.+... -..|+|+|+|+| ..+.|+++|+..+|+..+..+-   +|++
T Consensus       503 V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D-~~~~ddfiGq~~lPv~~Lr~Gy---R~Vp  578 (599)
T PLN02952        503 MYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYD-MSEKDDFGGQTCLPVSELRPGI---RSVP  578 (599)
T ss_pred             EEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecC-CCCCCCeEEEEEcchhHhcCCc---eeEe
Confidence                      567999999999999999999997665 467999999999 6778999999999999997543   5888


Q ss_pred             CcccCCCcccceEEEEEEEE
Q psy3954         148 LTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       148 L~~~~~~~~~~G~i~v~l~~  167 (268)
                      |.......-..-.|.+.+.+
T Consensus       579 L~~~~G~~l~~a~Llv~f~~  598 (599)
T PLN02952        579 LHDKKGEKLKNVRLLMRFIF  598 (599)
T ss_pred             CcCCCCCCCCCEEEEEEEEe
Confidence            86544332223345554443

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.40  E-value=9.7e-13  Score=96.26  Aligned_cols=74  Identities=27%  Similarity=0.306  Sum_probs=62.4

Q ss_pred             CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccC
Q psy3954         185 VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKE  262 (268)
Q Consensus       185 ~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~  262 (268)
                      ..|.+||||++.+. +   ....+|++++++.||.|||.|.|.+....-..|.|.|||++..++++||++.++|+++.
T Consensus         9 ~~G~~dPYv~v~v~-~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~   82 (111)
T cd04052           9 KTGLLSPYAELYLN-G---KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLI   82 (111)
T ss_pred             cCCCCCceEEEEEC-C---EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence            46789999999996 1   24579999999999999999999986544344999999988778999999999998874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN02223 phosphoinositide phospholipase C

Probab=99.39  E-value=3.8e-12  Score=114.15  Aligned_cols=142  Identities=18%  Similarity=0.204  Sum_probs=100.8

Q ss_pred             eeccccccceEEEeeeeeeccCccccccccc--------ccCCCeEEEEEEEcccCccc-c------CCCCCC-ceE---
Q psy3954          18 LMVNHATYKLMVKHTAYKYYLQPRKRLTANQ--------IIQDLGTLRIRIQYTADHIL-Q------PHYYED-LCT---   78 (268)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~--------~~~~~~~L~V~v~~~a~~L~-~------~~~~~d-yv~---   78 (268)
                      .-+|++.|.-+.-+   .|.++|........        .......|.|+|+ +|.+++ +      .....| ||+   
T Consensus       368 M~LN~G~F~~NG~C---GYVLKP~~Lr~~~~~~~FdP~~~~~~~~~L~V~Vi-sgq~~~~~~~k~~~~~s~~DpyV~VeI  443 (537)
T PLN02223        368 LWLMQGMFRANGGC---GYVKKPDFLLNAGPSGVFYPTENPVVVKILKVKIY-MGDGWIVDFKKRIGRLSKPDLYVRISI  443 (537)
T ss_pred             HHhhcchhccCCCC---CceECChhhccCCcccccCCCCCcccceEEEEEEE-EcccccCCcccccCCCCCCCeEEEEEE
Confidence            34677777655544   89999986544211        1222467999999 999875 2      234568 998   


Q ss_pred             -------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          79 -------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        79 -------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                             ...+|.+..++.||+|||+|.|.+... -..|+|+|+|.| ..+.|+++|+..+|+..+..+   -++++|..
T Consensus       444 ~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D-~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~  519 (537)
T PLN02223        444 AGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYE-VSTADAFCGQTCLPVSELIEG---IRAVPLYD  519 (537)
T ss_pred             eeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecC-CCCCCcEEEEEecchHHhcCC---ceeEeccC
Confidence                   456788888899999999999997666 467999999999 778899999999999999743   24566655


Q ss_pred             cCCCcccceEEEEEEEE
Q psy3954         151 VTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       151 ~~~~~~~~G~i~v~l~~  167 (268)
                      .....-..-.|.+.+.+
T Consensus       520 ~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        520 ERGKACSSTMLLTRFKW  536 (537)
T ss_pred             CCcCCCCCceEEEEEEe
Confidence            44332223455555443

>PLN02223 phosphoinositide phospholipase C

Probab=99.38  E-value=2.4e-12  Score=115.40  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=81.9

Q ss_pred             CeEEEEEceecCCC-C------CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEe
Q psy3954         170 TSLMVNVNEASGLT-Q------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHH  242 (268)
Q Consensus       170 ~~L~v~v~~a~~L~-~------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d  242 (268)
                      ..|.|+|+.|.+++ +      .....||||+|.+..-+.....++|.+..++.||+|||+|.|.+..+++.-|.|.|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            56889999999874 2      1233799999999844444556778888899999999999999998898889999999


Q ss_pred             cCCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954         243 DISG-LNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       243 ~~~~-~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      +|.. +++++|+..+|++++..|-.+
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~  514 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGIRA  514 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCcee
Confidence            9987 899999999999999987543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.37  E-value=9.6e-13  Score=132.96  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=79.9

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEecCCCC
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGL  247 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~  247 (268)
                      .|.|.|+|++|.||....|.+||||++.++.    ..++||++++++.||.|||.|.|.+..+.... |.|+|||+|.++
T Consensus      1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             CcceEEEEeeccccccccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            8999999999999996678899999999981    33679999999999999999998877666555 999999999986


Q ss_pred             CeeeEEEEEeCCccCC
Q psy3954         248 NVFLGEVHIPLNNKET  263 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~~  263 (268)
                      ++.+|.+.|++.++-.
T Consensus      2055 kd~~G~~~i~l~~vv~ 2070 (2102)
T PLN03200       2055 KSSLGKVTIQIDRVVM 2070 (2102)
T ss_pred             CCCCceEEEEHHHHhc
Confidence            6699999999988764

>KOG0905|consensus

Probab=99.37  E-value=1e-12  Score=124.02  Aligned_cols=110  Identities=29%  Similarity=0.399  Sum_probs=97.9

Q ss_pred             cccceEEEEEEEEcCCeEEEEEceecCCC-CCCC-CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCC
Q psy3954         155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT-QVNG-QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLG  231 (268)
Q Consensus       155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~-~~~g-~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~  231 (268)
                      ++..|+|.+++.|..+.|+|.|..|++|+ -.+| .+|||||.++.+++++..++||+++++|.||.|||..++. ++.+
T Consensus      1509 ~~iggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~ 1588 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKE 1588 (1639)
T ss_pred             cccCceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchh
Confidence            45578999999999999999999999996 3333 3899999999988888889999999999999999999998 7766


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      .+..  |+++||..+.. .+.++|.+.++|.+....
T Consensus      1589 ~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1589 ILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred             hhhhheeeeeeecccceeeeeeeeeeecchhhcchh
Confidence            6664  99999999888 999999999999998763

>PLN03008 Phospholipase D delta

Probab=99.36  E-value=4e-12  Score=118.62  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=62.9

Q ss_pred             CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCCC
Q psy3954         188 QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       188 ~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~~  265 (268)
                      .+||||+|.+. +   .++.+|++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.||+.++..|.
T Consensus        76 tSDPYV~I~Lg-~---~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge  148 (868)
T PLN03008         76 TSDPYVTVVVP-Q---ATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE  148 (868)
T ss_pred             CCCceEEEEEC-C---cceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC
Confidence            57999999996 2   3356999999999999999999998753 235999999999997799999999999998764

>cd00030 C2 C2 domain

Probab=99.34  E-value=7.9e-12  Score=88.52  Aligned_cols=91  Identities=27%  Similarity=0.444  Sum_probs=77.4

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecC-CCcEEEEEEEeCCCCCCCCce
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPR-RFRHLAVYAYDRDRTSKTDRV  125 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~-~~~~l~~~v~d~d~~~~~d~~  125 (268)
                      |.|.|+ +|++|+  ...+.++ ||.      ..++|+++.++.||.|||.|.|.+.. ....|.|+||+.+ ..+.+.+
T Consensus         1 l~v~i~-~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~-~~~~~~~   78 (102)
T cd00030           1 LRVTVI-EARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD-RFSKDDF   78 (102)
T ss_pred             CEEEEE-eeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC-CCCCCce
Confidence            468999 999998  4455677 998      56899999999999999999999888 5789999999999 6767889


Q ss_pred             eEEEEEeccccc-cccCccceecC
Q psy3954         126 LGKVTIQRSDLH-RISNKEHWFPL  148 (268)
Q Consensus       126 iG~~~i~l~~l~-~~~~~~~w~~L  148 (268)
                      ||.+.+++.++. .......|++|
T Consensus        79 ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          79 LGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEEEEEeHHHhhhcCCcCcceecC
Confidence            999999999987 55666777764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1326|consensus

Probab=99.34  E-value=4.6e-12  Score=118.12  Aligned_cols=221  Identities=20%  Similarity=0.234  Sum_probs=148.3

Q ss_pred             cccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCC-CcE
Q psy3954          40 PRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRH  108 (268)
Q Consensus        40 p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~  108 (268)
                      |+...+-++..+..-..+|.|+ +|-+|.  |.+|.+| |++       ..-+...+.+|+||+|++.|.+..... ...
T Consensus       599 pr~~~~~~~~~pi~~LvrVyvv-~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~  677 (1105)
T KOG1326|consen  599 PRHFLDLPKEEPIKCLVRVYVV-EAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKD  677 (1105)
T ss_pred             hhhhhcccccCcceeeEEEEEE-EeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhc
Confidence            3333333444555667889999 999998  8999999 999       234556889999999999999886655 688


Q ss_pred             EEEEEEeCCCCCCCCceeEEEEEeccccccc--------------cCccceecCccc-----------CCC---------
Q psy3954         109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI--------------SNKEHWFPLTPV-----------TQD---------  154 (268)
Q Consensus       109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~--------------~~~~~w~~L~~~-----------~~~---------  154 (268)
                      +.++|||+| ..+.|+.||+..+.|+.--..              .....|+.-...           .-.         
T Consensus       678 l~v~vyd~D-~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~  756 (1105)
T KOG1326|consen  678 LIVEVYDHD-LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVS  756 (1105)
T ss_pred             ceeEEEEee-cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcc
Confidence            999999999 899999999999987742210              112234321100           000         


Q ss_pred             ---------------------------------------------------------cccceEEEEEEEEc---------
Q psy3954         155 ---------------------------------------------------------SEVQGKIQIGVLST---------  168 (268)
Q Consensus       155 ---------------------------------------------------------~~~~G~i~v~l~~~---------  168 (268)
                                                                               .-.+|++.+-+.+.         
T Consensus       757 ~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl  836 (1105)
T KOG1326|consen  757 AIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPL  836 (1105)
T ss_pred             eEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCC
Confidence                                                                     00113332222221         


Q ss_pred             --------CCeEEEEEceecCCC--C--CCC--CCCCEEEEEEEecCCcceeeeceeccCCCC--CccceEEEEEcc---
Q psy3954         169 --------PTSLMVNVNEASGLT--Q--VNG--QCDPTAMVTVHYTHNKSDVQKSKVKKKSHS--PVFNESFMFDRS---  229 (268)
Q Consensus       169 --------~~~L~v~v~~a~~L~--~--~~g--~~dpyv~v~l~~~~~~~~~~kT~v~~~t~n--P~~ne~f~f~v~---  229 (268)
                              ...++|.|..-.+..  +  ..|  .+|.||+-.+.  +.+..+++|.+.++++.  -.||-.|.|...   
T Consensus       837 ~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~--gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~  914 (1105)
T KOG1326|consen  837 NITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVL--GDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLP  914 (1105)
T ss_pred             CCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccc--cchhhhcccceeeeeccCCcccceeeecccccch
Confidence                    556777777666663  2  122  28999999887  34456788988887763  346655555431   


Q ss_pred             C---------------CC-----CceEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         230 L---------------GD-----PIELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       230 ~---------------~~-----~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +               ++     ...|.|+|||.|.+ +|++||...++|+.+..+
T Consensus       915 ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p  970 (1105)
T KOG1326|consen  915 AEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP  970 (1105)
T ss_pred             HhhHhhhhhhhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence            0               11     11299999999999 999999999999988653

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.32  E-value=1.3e-11  Score=93.83  Aligned_cols=87  Identities=21%  Similarity=0.267  Sum_probs=70.5

Q ss_pred             CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC---
Q psy3954         170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG---  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~---  246 (268)
                      ..|.|.|++|++|+..   .+|||.+.+.    .....+|+++.++.||.|+|.|.|.... ....|.|.||+.+..   
T Consensus        11 ~sL~v~V~EAk~Lp~~---~~~Y~~i~Ld----~~~vaRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013          11 NSLKLWIIEAKGLPPK---KRYYCELCLD----KTLYARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEccCCCCc---CCceEEEEEC----CEEEEEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCcccc
Confidence            5689999999999753   3899999998    2345699999999999999999997543 245599999865422   


Q ss_pred             --CCeeeEEEEEeCCccCCC
Q psy3954         247 --LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       247 --~~~~lG~~~l~l~~~~~~  264 (268)
                        ++.+||.+.||+..+..+
T Consensus        83 ~~~~~~IG~V~Ip~~~l~~~  102 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVSSR  102 (146)
T ss_pred             ccCCcEEEEEEEEHHHhcCC
Confidence              578999999999998764

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.30  E-value=2.5e-11  Score=110.64  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=101.7

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccccc---------ccCCCeEEEEEEEcccCccc--------cCCCCCC-ceE
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQ---------IIQDLGTLRIRIQYTADHIL--------QPHYYED-LCT   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~---------~~~~~~~L~V~v~~~a~~L~--------~~~~~~d-yv~   78 (268)
                      ..++|++.|.-+.-+   .|.|+|........         ..+....|.|+|+ .+.+++        +.....| ||+
T Consensus       409 ~M~LN~G~F~~NG~c---GYVLKP~~lr~~~~~~~~fdp~~~~~~~~~L~V~Vi-sgq~~~l~~~~~~~~~~~~~dpyV~  484 (581)
T PLN02222        409 SLWLMQGMFRANGGC---GYIKKPDLLLKSGSDSDIFDPKATLPVKTTLRVTIY-MGEGWYFDFRHTHFDQYSPPDFYTR  484 (581)
T ss_pred             hhhhhcchhccCCCC---ceEECCHHhccCCccccccCCCCCCCccceEEEEEE-EcccccCCCCccccCCCCCCCeeEE
Confidence            356888888755533   89999976654322         1223467999999 998753        1233567 997


Q ss_pred             ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954          79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP  147 (268)
Q Consensus        79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~  147 (268)
                                .+.||+++.++.||+|||+|.|.+... -..|+|.|+|+| ..+.|+++|+..+|+..|..+   -+.++
T Consensus       485 Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D-~~~~ddfigq~~lPv~~Lr~G---yR~V~  560 (581)
T PLN02222        485 VGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYD-MSEKDDFGGQTCLPVWELSQG---IRAFP  560 (581)
T ss_pred             EEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECC-CCCCCcEEEEEEcchhhhhCc---cceEE
Confidence                      567999999999999999999986655 578999999999 677899999999999998743   23456


Q ss_pred             CcccCCCcccceEEEEEEEE
Q psy3954         148 LTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       148 L~~~~~~~~~~G~i~v~l~~  167 (268)
                      |.......-..-.|.+.+.+
T Consensus       561 L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        561 LHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             ccCCCcCCCCCeeEEEEEEe
Confidence            65444332223455555543

>PLN02270 phospholipase D alpha

Probab=99.30  E-value=3.8e-11  Score=112.02  Aligned_cols=113  Identities=13%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             CeEEEEEEEcccCcccc--------------------CCCCCC-ceE------EEeeecccCCC-CCCccCcEEEEEecC
Q psy3954          53 LGTLRIRIQYTADHILQ--------------------PHYYED-LCT------QILNSPSVNPV-TSPFFGEEFQFDIPR  104 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~--------------------~~~~~d-yv~------~~~~T~~~~~t-~nP~wne~f~f~v~~  104 (268)
                      .|.|.|+|. +|++|++                    ..+.+| ||+      ...||+++.+. .||.|||+|.+.+..
T Consensus         7 hg~l~~~i~-ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          7 HGTLHATIY-EVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             ecceEEEEE-EcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            489999999 9999982                    124678 998      78999999885 699999999999999


Q ss_pred             CCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcc-cceEEEEEEEEc
Q psy3954         105 RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSE-VQGKIQIGVLST  168 (268)
Q Consensus       105 ~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~v~l~~~  168 (268)
                      .-..+.|.|.|.| .++.. +||.+.+|.+++..+...+.|+++.....+.. ...+|++++.|.
T Consensus        86 ~~~~v~f~vkd~~-~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~  148 (808)
T PLN02270         86 MASNIIFTVKDDN-PIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYF  148 (808)
T ss_pred             CcceEEEEEecCC-ccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEE
Confidence            8899999999999 78755 99999999999998889999999976553332 234899999987

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.29  E-value=2.4e-11  Score=110.99  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=101.3

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccccc---c------cCCCeEEEEEEEcccCccc-c-------CCCCCC-ceE
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQ---I------IQDLGTLRIRIQYTADHIL-Q-------PHYYED-LCT   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~---~------~~~~~~L~V~v~~~a~~L~-~-------~~~~~d-yv~   78 (268)
                      ..++|++.|.-+.-+   .|.++|........   .      ......|.|+|+ .+.+++ +       .....| ||+
T Consensus       426 ~M~LN~G~F~~NG~C---GYVLKP~~Lr~~~~~~~~fdP~~~~~~~~~L~V~Vi-sGq~~~l~~~k~~~~~~s~~DpyV~  501 (598)
T PLN02230        426 ALWLMEGMFRANGGC---GYVKKPDFLMDAGPNGQDFYPKDNSCPKKTLKVKVC-MGDGWLLDFKKTHFDSYSPPDFFVR  501 (598)
T ss_pred             HHHhhcchhccCCCC---CceECCHHhcCCCccccccCCCcCCCcCcEEEEEEE-EccCccCCCccccCCCCCCCCceEE
Confidence            356888888765543   89999986654321   1      123467999999 999875 1       123468 998


Q ss_pred             ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954          79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP  147 (268)
Q Consensus        79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~  147 (268)
                                ...+|++..++.||+|||+|.|.+... -..|+|+|+|+| ....|+|+|+..+|+..|..+   -+.++
T Consensus       502 Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d-~~~~ddfiGQ~~lPv~~Lr~G---yR~V~  577 (598)
T PLN02230        502 VGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHD-INEKDDFGGQTCLPVSEIRQG---IHAVP  577 (598)
T ss_pred             EEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECC-CCCCCCEEEEEEcchHHhhCc---cceEe
Confidence                      456899999999999999999996655 578999999999 778899999999999999743   23455


Q ss_pred             CcccCCCcccceEEEEEEEE
Q psy3954         148 LTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       148 L~~~~~~~~~~G~i~v~l~~  167 (268)
                      |.......-..-.|.+++.+
T Consensus       578 L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        578 LFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             ccCCCcCCCCCCeeEEEEEe
Confidence            65443322223355555443

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.29  E-value=2.5e-11  Score=86.16  Aligned_cols=82  Identities=27%  Similarity=0.435  Sum_probs=70.9

Q ss_pred             EEEEEEcccCccc--cCCCCCC-ceE-----E---EeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954          56 LRIRIQYTADHIL--QPHYYED-LCT-----Q---ILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~---~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d  123 (268)
                      |.|+|+ +|++|+  ...+..+ ||.     .   ..+|+++.++.||.|||+|.|.+... .+.|.|+|||.+ ..+.+
T Consensus         2 l~i~i~-~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~-~~~~~   79 (101)
T smart00239        2 LTVKII-SARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD-RFGRD   79 (101)
T ss_pred             eEEEEE-EeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC-CccCC
Confidence            679999 999999  3334677 998     2   68999999999999999999998887 899999999999 66678


Q ss_pred             ceeEEEEEeccccccc
Q psy3954         124 RVLGKVTIQRSDLHRI  139 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~~  139 (268)
                      .++|.+.+++.++..+
T Consensus        80 ~~~G~~~~~l~~~~~~   95 (101)
T smart00239       80 DFIGQVTIPLSDLLLG   95 (101)
T ss_pred             ceeEEEEEEHHHcccC
Confidence            9999999999888644

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1327|consensus

Probab=99.29  E-value=2.7e-11  Score=107.82  Aligned_cols=179  Identities=17%  Similarity=0.213  Sum_probs=137.1

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCC---CCCCceeEEEEEeccccccccCccceecCcccCCC
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRT---SKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD  154 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~---~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  154 (268)
                      +..||.++++.+||.|-+.|.+....+ .+.|+|.++|.+..   +...+|+|++...+.++........-+.+++.  .
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~--~  118 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG--K  118 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC--c
Confidence            677999999999999999999887776 79999999998732   35678999999999988755544444444443  2


Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEcc
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRS  229 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~  229 (268)
                      ....|+|.+.+.-.  ......-.++|++|.  +..+.+|||..++-..+.. ....++|.+++++++|.|.+   |.++
T Consensus       119 ~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~  195 (529)
T KOG1327|consen  119 NAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSIS  195 (529)
T ss_pred             cCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccc
Confidence            33467887776644  344555667789995  6788899999998874333 45689999999999999986   4444


Q ss_pred             CCCCc-----e-EEEEEEecCCC-CCeeeEEEEEeCCccC
Q psy3954         230 LGDPI-----E-LVVSLHHDISG-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       230 ~~~~~-----~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~  262 (268)
                      ...+.     . +.+.+||++.. ++++||.+..++..+.
T Consensus       196 ~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  196 LQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             hhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            33332     2 89999999988 8899999999888875

>KOG1264|consensus

Probab=99.28  E-value=1.2e-11  Score=113.10  Aligned_cols=114  Identities=20%  Similarity=0.269  Sum_probs=91.9

Q ss_pred             ccccccceEEEeeeeeeccCcccccccccccCC--------CeEEEEEEEcccCccc--cCCCCCCceE-----------
Q psy3954          20 VNHATYKLMVKHTAYKYYLQPRKRLTANQIIQD--------LGTLRIRIQYTADHIL--QPHYYEDLCT-----------   78 (268)
Q Consensus        20 ~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~--------~~~L~V~v~~~a~~L~--~~~~~~dyv~-----------   78 (268)
                      +|||.|.++.-+   .|.|+|+......-.+..        .-.|.|.|+ .||.|+  +.+..|+||.           
T Consensus      1026 mNqa~F~~ngrc---GYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vi-gaRHL~k~gr~i~cPfVevEiiGa~~Dt~ 1101 (1267)
T KOG1264|consen 1026 MNQALFSLNGRC---GYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVL-GARHLPKLGRSIACPFVEVEIIGAEYDTN 1101 (1267)
T ss_pred             hhHHHhhcCCce---eeEecchhcccccCCCCChHHhccccceEEEEEEe-eccccccCCCCccCCcEEEEEeccccCCC
Confidence            689999888776   899999987766554222        146889999 999999  3333445665           


Q ss_pred             EEeeecccCCCCCCccC-cEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEecccccc
Q psy3954          79 QILNSPSVNPVTSPFFG-EEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR  138 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wn-e~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~  138 (268)
                      ..++|.++.+.+||+|| |.|+|++..+ ...|+|.|+|.| .++...|||++.+|+..+..
T Consensus      1102 ~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD-mfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1102 KFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED-MFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             ceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc-ccCCcceeeeeecchhhhhc
Confidence            45556667788999999 9999998887 788999999999 89888899999999998864

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.27  E-value=2.2e-11  Score=111.16  Aligned_cols=97  Identities=19%  Similarity=0.262  Sum_probs=81.4

Q ss_pred             CeEEEEEceecCCC-C-------CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954         170 TSLMVNVNEASGLT-Q-------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       170 ~~L~v~v~~a~~L~-~-------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      ..|.|.|+.+.+++ +       .....||||+|.+..-+....+++|++..++.||.|||.|.|++..+++.-|.|.|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            46889999999864 1       112369999999984444455678899999999999999999998888888999999


Q ss_pred             ecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954         242 HDISG-LNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       242 d~~~~-~~~~lG~~~l~l~~~~~~~~  266 (268)
                      |+|.. +++++|+..||+.++..|-.
T Consensus       549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR  574 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVSEIRQGIH  574 (598)
T ss_pred             ECCCCCCCCEEEEEEcchHHhhCccc
Confidence            99987 99999999999999988754

>PLN02952 phosphoinositide phospholipase C

Probab=99.27  E-value=2.7e-11  Score=110.84  Aligned_cols=98  Identities=16%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             CeEEEEEceecCCC--CC----C--CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954         170 TSLMVNVNEASGLT--QV----N--GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~----~--g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      ..|.|.|+.|.+++  ..    +  ...||||+|.+..-+....+++|+++.++.||+|||.|.|.+..+++.-|.|.||
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~  549 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR  549 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence            46889999998874  11    1  1259999999984444456789999999999999999999998888888999999


Q ss_pred             ecCCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954         242 HDISG-LNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       242 d~~~~-~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      |+|.. .++++|++.+|++++..|..|
T Consensus       550 D~D~~~~ddfiGq~~lPv~~Lr~GyR~  576 (599)
T PLN02952        550 EYDMSEKDDFGGQTCLPVSELRPGIRS  576 (599)
T ss_pred             ecCCCCCCCeEEEEEcchhHhcCCcee
Confidence            99988 899999999999999988654

>PLN02228 Phosphoinositide phospholipase C

Probab=99.25  E-value=7.1e-11  Score=107.46  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             eeccccccceEEEeeeeeeccCccccccccc------ccCCCeEEEEEEEcccCccc-----c---CCCCCC-ceE----
Q psy3954          18 LMVNHATYKLMVKHTAYKYYLQPRKRLTANQ------IIQDLGTLRIRIQYTADHIL-----Q---PHYYED-LCT----   78 (268)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~------~~~~~~~L~V~v~~~a~~L~-----~---~~~~~d-yv~----   78 (268)
                      .++|++.|.-+.-+   .|.|+|........      ..+....|.|+|+ +|.+|+     +   .....| ||+    
T Consensus       392 M~lN~g~F~~NG~c---GYVLKP~~Lr~~~~~f~p~~~~p~~~~L~I~Vi-SGq~l~lp~~~~~~~~~~~~DpyV~Vei~  467 (567)
T PLN02228        392 LWIMQGMFRANGGC---GYVKKPRILLDEHTLFDPCKRLPIKTTLKVKIY-TGEGWDLDFHLTHFDQYSPPDFFVKIGIA  467 (567)
T ss_pred             HHhhcCchhhCCCC---CceeCchhhcccccccCCccCCCcCceEEEEEE-ECCccCCCCCCCCCCCCCCCCcEEEEEEE
Confidence            44688888654433   89999986554322      1223457999999 999874     1   123467 998    


Q ss_pred             ------EEeeecccCCCCCCcc-CcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          79 ------QILNSPSVNPVTSPFF-GEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        79 ------~~~~T~~~~~t~nP~w-ne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                            ..+||+++.++.||+| ||+|.|.+... -..|+|.|+|.| ..+.|+++|+..+|+..|..+   -+.++|..
T Consensus       468 G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d-~~~~d~figq~~lPv~~Lr~G---YR~VpL~~  543 (567)
T PLN02228        468 GVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYD-NDTQNDFAGQTCLPLPELKSG---VRAVRLHD  543 (567)
T ss_pred             ecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCC-CCCCCCEEEEEEcchhHhhCC---eeEEEccC
Confidence                  4579999999999999 99999996665 578999999999 777899999999999998632   23456654


Q ss_pred             cCCCcccceEEEEEEEEc
Q psy3954         151 VTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       151 ~~~~~~~~G~i~v~l~~~  168 (268)
                      .....-...+|.+.+.+.
T Consensus       544 ~~G~~l~~atLfv~~~~~  561 (567)
T PLN02228        544 RAGKAYKNTRLLVSFALD  561 (567)
T ss_pred             CCCCCCCCeEEEEEEEEc
Confidence            443332345676666553

>cd00030 C2 C2 domain

Probab=99.22  E-value=1.2e-10  Score=82.43  Aligned_cols=87  Identities=36%  Similarity=0.427  Sum_probs=73.5

Q ss_pred             EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954         172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN  248 (268)
Q Consensus       172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~  248 (268)
                      |.|.|++|++|..  ..+.++|||.+.+..    ....+|++..++.||.|||.|.|.+.......|.|+||+.+.. .+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~   76 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKD   76 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCC
Confidence            4689999999963  455689999999982    3678999999999999999999998764334499999999887 79


Q ss_pred             eeeEEEEEeCCccC
Q psy3954         249 VFLGEVHIPLNNKE  262 (268)
Q Consensus       249 ~~lG~~~l~l~~~~  262 (268)
                      ++||.+.+++..+.
T Consensus        77 ~~ig~~~~~l~~l~   90 (102)
T cd00030          77 DFLGEVEIPLSELL   90 (102)
T ss_pred             ceeEEEEEeHHHhh
Confidence            99999999998876

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.22  E-value=6.8e-11  Score=107.85  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             CeEEEEEceecCCC----C----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954         170 TSLMVNVNEASGLT----Q----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       170 ~~L~v~v~~a~~L~----~----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      ..|.|+|+.+.+++    .    .....||||+|.+..-+....+++|+++.++.||.|||.|.|.+..+++.-|.|.|+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~  531 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH  531 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence            45888999998742    1    122379999999974334456779999999999999999999998888888999999


Q ss_pred             ecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954         242 HDISG-LNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       242 d~~~~-~~~~lG~~~l~l~~~~~~~~  266 (268)
                      |+|.. +++++|+..||++++..|-.
T Consensus       532 d~D~~~~ddfigq~~lPv~~Lr~GyR  557 (581)
T PLN02222        532 EYDMSEKDDFGGQTCLPVWELSQGIR  557 (581)
T ss_pred             ECCCCCCCcEEEEEEcchhhhhCccc
Confidence            99887 89999999999999988754

>KOG0169|consensus

Probab=99.21  E-value=6.3e-11  Score=108.56  Aligned_cols=143  Identities=19%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccccccc-------CCCeEEEEEEEcccCccc---c---CCCCCC-ceE----
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQII-------QDLGTLRIRIQYTADHIL---Q---PHYYED-LCT----   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~-------~~~~~L~V~v~~~a~~L~---~---~~~~~d-yv~----   78 (268)
                      .+-+|++.|.-+.-   ..|.+.|....++...+       +..-.|.|+|+ ++.+++   +   .+..+| ||.    
T Consensus       575 ~l~L~~G~Fr~NGg---CGYVlKP~~L~~~~~~F~P~~~~~~~~~tL~IkI~-sGq~~~~~~~~~~~~~~~dP~v~VeI~  650 (746)
T KOG0169|consen  575 MLDLNQGMFRANGG---CGYVLKPDFLLDSGSTFDPKSNLPPVKKTLKIKII-SGQGWLPDFGKTKFGEISDPDVYVEIA  650 (746)
T ss_pred             hhhhhhhhhccCCC---ccceECcHHHcCCCCccCCCCCCCCCCceeEEEEE-ecCcccCCCCCCcccccCCCCEEEEEc
Confidence            44567777754443   38999999887733332       22236999999 999776   1   123455 444    


Q ss_pred             ------EEeeec-ccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          79 ------QILNSP-SVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        79 ------~~~~T~-~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                            ...+|+ +..++-||.|+|+|+|.+..+ =..|+|.|+|+| ..++|+|+|+.++|+..|..+  .. -++|..
T Consensus       651 Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d-~~~~ddF~GQ~tlP~~~L~~G--yR-hVpL~~  726 (746)
T KOG0169|consen  651 GVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYD-YIGKDDFIGQTTLPVSELRQG--YR-HVPLLS  726 (746)
T ss_pred             ccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecC-CCCcccccceeeccHHHhhCc--ee-eeeecC
Confidence                  577899 556678999999999997776 477999999999 888999999999999999743  22 245544


Q ss_pred             cCCCcccceEEEEEEEE
Q psy3954         151 VTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       151 ~~~~~~~~G~i~v~l~~  167 (268)
                      .....-..-+|.+.+.+
T Consensus       727 ~~G~~~~~asLfv~i~~  743 (746)
T KOG0169|consen  727 REGEALSSASLFVRIAI  743 (746)
T ss_pred             CCCccccceeEEEEEEE
Confidence            33222223445444443

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.18  E-value=2.6e-11  Score=81.74  Aligned_cols=92  Identities=21%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             EEEEceecCCC--CC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-
Q psy3954         173 MVNVNEASGLT--QV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-  246 (268)
Q Consensus       173 ~v~v~~a~~L~--~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-  246 (268)
                      .+++++|+||.  .. ...+.-|++-.+.  -.+....||+++++..||+|+|+|.|.+...+++.  |.|+|+.  .. 
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~t--l~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILT--LPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEe--cCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence            58999999995  22 2335667776665  22345689999999999999999999999989988  8899998  34 


Q ss_pred             CCeeeEEEEEeCCccCC-CCCCC
Q psy3954         247 LNVFLGEVHIPLNNKET-SSSWW  268 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~-~~~~w  268 (268)
                      +++.||.|.+++++++. +..||
T Consensus        78 RKe~iG~~sL~l~s~geeE~~HW  100 (103)
T cd08684          78 RKRTIGECSLSLRTLSTQETDHW  100 (103)
T ss_pred             ccceeeEEEeecccCCHHHhhhh
Confidence            89999999999999988 56676

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1328|consensus

Probab=99.15  E-value=1.3e-11  Score=111.82  Aligned_cols=97  Identities=20%  Similarity=0.321  Sum_probs=84.1

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE------------EEeeecccCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT------------QILNSPSVNPVT   90 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------------~~~~T~~~~~t~   90 (268)
                      ..|....+..|...             ...|.|.|+ .|+++.  |++|.+| ||+            ...||+++.+|+
T Consensus       932 ~fg~lsvr~~y~~n-------------~q~L~veVl-hA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtL  997 (1103)
T KOG1328|consen  932 QFGVLSVRAYYNGN-------------AQTLVVEVL-HAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTL  997 (1103)
T ss_pred             cCCceEEEEEeecc-------------ccchhhhhh-ccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccc
Confidence            44445555556655             678999999 999997  9999999 988            678999999999


Q ss_pred             CCccCcEEEEEecCC-----CcEEEEEEEeCCCCCCCCceeEEEEEeccccc
Q psy3954          91 SPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH  137 (268)
Q Consensus        91 nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~  137 (268)
                      ||+|+|.|+|.|+.+     ...|.|+|+|+| .++.+||-|++.+.|.++.
T Consensus       998 nPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD-~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen  998 NPVFDETFEFSVPPEPCSTETAMLHFTVMDHD-YLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cchhhhheeeecCccccccccceEEEEeeccc-eecccccchHHHHhhCCCC
Confidence            999999999999988     457999999999 9999999999999888775

>PLN02228 Phosphoinositide phospholipase C

Probab=99.14  E-value=2.4e-10  Score=104.05  Aligned_cols=97  Identities=15%  Similarity=0.227  Sum_probs=80.8

Q ss_pred             CeEEEEEceecCCC-----CC---CCCCCCEEEEEEEecCCcceeeeceeccCCCCCcc-ceEEEEEccCCCCceEEEEE
Q psy3954         170 TSLMVNVNEASGLT-----QV---NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVF-NESFMFDRSLGDPIELVVSL  240 (268)
Q Consensus       170 ~~L~v~v~~a~~L~-----~~---~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~~l~i~V  240 (268)
                      ..|.|+|+.|.+|+     ..   ....||||+|.+..-+....+++|+++.++.||.| ||.|.|.+..+++.-|.|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            36889999999873     11   12279999999974444456789999998899999 99999999888888899999


Q ss_pred             EecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954         241 HHDISG-LNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       241 ~d~~~~-~~~~lG~~~l~l~~~~~~~~  266 (268)
                      +|+|.. .++++|++.||++.+..|-.
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR  537 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVR  537 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence            999877 89999999999999988754

>KOG1011|consensus

Probab=99.13  E-value=7e-11  Score=106.06  Aligned_cols=94  Identities=21%  Similarity=0.373  Sum_probs=80.9

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      +..++++|+.|.+|.  |..|.+||||.+.++     ..+++|+++...+||+|||.|.|.+-. .-+.|.++|||.|..
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~d  367 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDND  367 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCccc
Confidence            678999999999995  788999999999998     778999999999999999999998753 344599999997742


Q ss_pred             ------------CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 ------------LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 ------------~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                                  +|+|||+..|.+..+..+..-|
T Consensus       368 lksklrqkl~resddflgqtvievrtlsgemdvw  401 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVW  401 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEecccchhhh
Confidence                        6899999999999888766555

>KOG0169|consensus

Probab=99.12  E-value=1.3e-10  Score=106.47  Aligned_cols=97  Identities=20%  Similarity=0.327  Sum_probs=81.6

Q ss_pred             eEEEEEceecCCC-CC-----CCCCCCEEEEEEEecCCcceeeece-eccCCCCCccceEEEEEccCCCCceEEEEEEec
Q psy3954         171 SLMVNVNEASGLT-QV-----NGQCDPTAMVTVHYTHNKSDVQKSK-VKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       171 ~L~v~v~~a~~L~-~~-----~g~~dpyv~v~l~~~~~~~~~~kT~-v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      .|.|.|+.+.+++ +.     ...+||||.|....-+......+|+ +..++-||.|+|.|+|++..+++.-|.|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            5889999999774 21     2348999999987444456678999 666888999999999999999999999999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      |.. +|+|+|+..+|++++..|-.|
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            998 899999999999999887543

>KOG1264|consensus

Probab=99.08  E-value=8.4e-10  Score=101.36  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             CCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccc-eEEEEEccCCCCceEEEEEEecCC
Q psy3954         169 PTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFN-ESFMFDRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~n-e~f~f~v~~~~~~~l~i~V~d~~~  245 (268)
                      .-.|.|.|+.||.|++. .|.+.|||+|.+....-. ...+.|.+..+.+||+|| |.|+|.+..+++.-|.|.|+|.|.
T Consensus      1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            46789999999999954 444679999999833333 344556677899999999 999999999998889999999999


Q ss_pred             C-CCeeeEEEEEeCCccCCC
Q psy3954         246 G-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~~  264 (268)
                      + ...|||++..|+.++..|
T Consensus      1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cCCcceeeeeecchhhhhcc
Confidence            9 777999999999998765

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.97  E-value=1.9e-09  Score=75.98  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=63.6

Q ss_pred             EEEEEEcccCccc--c---CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCC
Q psy3954          56 LRIRIQYTADHIL--Q---PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTD  123 (268)
Q Consensus        56 L~V~v~~~a~~L~--~---~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d  123 (268)
                      |.|+|. +|+++.  +   ..+.+| ||.      ++.||++   +.||.|||+|.|.+. ....+.+.|||..  ....
T Consensus         1 L~I~V~-~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~--~~~~   73 (109)
T cd08689           1 LTITIT-SARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKG--GDQP   73 (109)
T ss_pred             CEEEEE-EEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCC--CCee
Confidence            679999 999998  3   467788 998      6888887   479999999999995 4699999999998  3456


Q ss_pred             ceeEEEEEecccccc
Q psy3954         124 RVLGKVTIQRSDLHR  138 (268)
Q Consensus       124 ~~iG~~~i~l~~l~~  138 (268)
                      -.||..-+.++++..
T Consensus        74 ~Pi~llW~~~sdi~E   88 (109)
T cd08689          74 VPVGLLWLRLSDIAE   88 (109)
T ss_pred             cceeeehhhHHHHHH
Confidence            689999999988863

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1031|consensus

Probab=98.93  E-value=2e-09  Score=95.91  Aligned_cols=109  Identities=22%  Similarity=0.390  Sum_probs=88.2

Q ss_pred             eEEEEEEEcccCccc---cCCCCCC-ceE-----EEeeecccCCCCCCccC-cEEEEEecCC---CcEEEEEEEeCCCCC
Q psy3954          54 GTLRIRIQYTADHIL---QPHYYED-LCT-----QILNSPSVNPVTSPFFG-EEFQFDIPRR---FRHLAVYAYDRDRTS  120 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~---~~~~~~d-yv~-----~~~~T~~~~~t~nP~wn-e~f~f~v~~~---~~~l~~~v~d~d~~~  120 (268)
                      |.|.|+|. .||+||   ..+...| ||.     ..++|.+..+++||.|| +-|.|+|.+.   +..|.+.+.|+| ..
T Consensus         3 gkl~vki~-a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d-ty   80 (1169)
T KOG1031|consen    3 GKLGVKIK-AARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD-TY   80 (1169)
T ss_pred             CcceeEEE-eccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc-cc
Confidence            67899999 999999   4567788 988     67899999999999999 5789998887   789999999999 99


Q ss_pred             CCCceeEEEEEecccccccc----------CccceecCcccCCCcccceEEEEEEE
Q psy3954         121 KTDRVLGKVTIQRSDLHRIS----------NKEHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~~~~----------~~~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                      +.++.||++.|++..+....          -...|+++-..-  ...+|+|.+-++
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivk  134 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVK  134 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEE
Confidence            99999999999988665321          245799885432  234677776554

>KOG2059|consensus

Probab=98.88  E-value=3e-09  Score=96.61  Aligned_cols=93  Identities=24%  Similarity=0.291  Sum_probs=79.0

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      ..|.|.|.+|+||+  +..|..|||+.|.+.+    ....+|.++.+++.|.|.|.|.|.++. ...-|.|-|||.| + 
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~----E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~   78 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ----EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LK   78 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecc----hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cc
Confidence            46889999999998  6788899999999973    457899999999999999999999864 3445999999999 6 


Q ss_pred             CCeeeEEEEEeCCccCC--CCCCC
Q psy3954         247 LNVFLGEVHIPLNNKET--SSSWW  268 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~--~~~~w  268 (268)
                      +|+.||.+.|.-.++..  |...|
T Consensus        79 ~D~~IGKvai~re~l~~~~~~d~W  102 (800)
T KOG2059|consen   79 RDDIIGKVAIKREDLHMYPGKDTW  102 (800)
T ss_pred             cccccceeeeeHHHHhhCCCCccc
Confidence            99999999998776644  55555

>KOG1031|consensus

Probab=98.87  E-value=3.4e-09  Score=94.43  Aligned_cols=90  Identities=23%  Similarity=0.266  Sum_probs=80.1

Q ss_pred             CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccc-eEEEEEccCCCCce--EEEEEEe
Q psy3954         169 PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN-ESFMFDRSLGDPIE--LVVSLHH  242 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~n-e~f~f~v~~~~~~~--l~i~V~d  242 (268)
                      .|.|-|.|..||+||  | .+...|.||++.+.     ...+||.+..+++||.|| +.|.|.+...++++  |+|++.|
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld   76 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD   76 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence            367889999999998  3 34558999999998     778999999999999999 88999999888887  9999999


Q ss_pred             cCCC-CCeeeEEEEEeCCccCC
Q psy3954         243 DISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       243 ~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +|.. .++-||.+.|+++-+..
T Consensus        77 ~dtysandaigkv~i~idpl~~   98 (1169)
T KOG1031|consen   77 HDTYSANDAIGKVNIDIDPLCL   98 (1169)
T ss_pred             ccccccccccceeeeccChHHH
Confidence            9999 99999999999987754

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.86  E-value=1e-08  Score=72.34  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=62.9

Q ss_pred             EEEEEceecCCCC-----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       172 L~v~v~~a~~L~~-----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      |.|+|..|||+..     ..+.++|||.+.+.    ...+.+|++   +.||.|||.|.|++.  ...++.+.|||....
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~   71 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD   71 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC
Confidence            5789999999963     24568999999997    134677777   478999999999983  344599999998655


Q ss_pred             CCeeeEEEEEeCCcc
Q psy3954         247 LNVFLGEVHIPLNNK  261 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~  261 (268)
                      ..--||-.-+.++.+
T Consensus        72 ~~~Pi~llW~~~sdi   86 (109)
T cd08689          72 QPVPVGLLWLRLSDI   86 (109)
T ss_pred             eecceeeehhhHHHH
Confidence            556788877777665

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02270 phospholipase D alpha

Probab=98.72  E-value=6.1e-08  Score=90.95  Aligned_cols=91  Identities=16%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             CCeEEEEEceecCCCCC--------------------CCCCCCEEEEEEEecCCcceeeeceeccCC-CCCccceEEEEE
Q psy3954         169 PTSLMVNVNEASGLTQV--------------------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKS-HSPVFNESFMFD  227 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~--------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~~ne~f~f~  227 (268)
                      -|.|.++|++|++|++.                    .+.+||||.|.+.    .....+|+++.+. .||.|||+|..+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence            47889999999999731                    2458999999997    3567899999875 599999999988


Q ss_pred             ccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCC
Q psy3954         228 RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       228 v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~  264 (268)
                      +... ...|.|+|.|.+.++..+||.+.||...+..|
T Consensus        83 ~ah~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g  118 (808)
T PLN02270         83 CAHM-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDG  118 (808)
T ss_pred             eccC-cceEEEEEecCCccCceEEEEEEEEHHHhcCC
Confidence            7543 35599999999888888999999999988765

>KOG0905|consensus

Probab=98.68  E-value=2.6e-08  Score=94.97  Aligned_cols=97  Identities=23%  Similarity=0.323  Sum_probs=84.2

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEE-ecCC---CcEEEEEEEe
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYAYD  115 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v~d  115 (268)
                      .+.|.|-|. .|++|+  ..+.-+| ||+          .+.||+++++|.||.|||...+. ++.+   .+.|.+.||.
T Consensus      1523 ~~~LtImV~-H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVM-HAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             CceEEEEhh-hhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            478999999 999997  4444556 998          68899999999999999999988 6666   5899999999


Q ss_pred             CCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954         116 RDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus       116 ~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      .+ .+..+.++|.+.|+|.++...++...||+|...
T Consensus      1602 ~~-~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NG-GLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             cc-ceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            99 788999999999999999888888899998643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.60  E-value=3.2e-08  Score=66.98  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             EEEEEcccCccc--cCCC-CCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC
Q psy3954          57 RIRIQYTADHIL--QPHY-YED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        57 ~V~v~~~a~~L~--~~~~-~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~  121 (268)
                      .|+|+ .+++|.  ..-| ... |++        -.++|++.+...||+|+|+|.|.+...   ...|.|.|+..-   .
T Consensus         2 witv~-~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~---~   77 (103)
T cd08684           2 WITVL-KCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT---P   77 (103)
T ss_pred             EEEEE-EecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC---C
Confidence            57889 999998  3333 333 888        578999999999999999999997665   678999998843   5


Q ss_pred             CCceeEEEEEeccccccccCccceec
Q psy3954         122 TDRVLGKVTIQRSDLHRISNKEHWFP  147 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~~~~~w~~  147 (268)
                      +.+.||.+.+.++++- .++..+|.+
T Consensus        78 RKe~iG~~sL~l~s~g-eeE~~HW~e  102 (103)
T cd08684          78 RKRTIGECSLSLRTLS-TQETDHWLE  102 (103)
T ss_pred             ccceeeEEEeecccCC-HHHhhhhhc
Confidence            6779999999999876 345667764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02352 phospholipase D epsilon

Probab=98.58  E-value=3.5e-07  Score=85.69  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             CeEEEEEEEcccCccccC-C------CCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCC-cEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHILQP-H------YYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRF-RHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~~-~------~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~l~~~v~d~d  117 (268)
                      .|.|.++|. +|+-+.+. .      ...| ||+      ...||   .+..||.|||+|.+.+...- ..+.|.|.| +
T Consensus         9 hg~l~~~i~-~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-~   83 (758)
T PLN02352          9 HGTLEATIF-DATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-K   83 (758)
T ss_pred             ccceEEEEE-EeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-C
Confidence            589999999 99844311 0      1127 998      67788   55669999999999988885 789999987 2


Q ss_pred             CCCCCCceeEEEEEeccccccccC-ccceecCcccCCCcccceEEEEEEEEc
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISN-KEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                           ..+||.+.+|.+++..+.. .+.|+++...........+|++++.|.
T Consensus        84 -----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  130 (758)
T PLN02352         84 -----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFR  130 (758)
T ss_pred             -----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEE
Confidence                 4589999999999988766 899999976553333225999999987

>KOG2060|consensus

Probab=98.53  E-value=8.9e-08  Score=81.45  Aligned_cols=183  Identities=18%  Similarity=0.183  Sum_probs=117.7

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccc--ccc---------ccCcccee
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSD--LHR---------ISNKEHWF  146 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~--l~~---------~~~~~~w~  146 (268)
                      ....+.+...+.||+|+++..|..... ...++..+.-.....+  -+++.+..-+++  +..         ......|+
T Consensus       146 Sv~~~~va~~~~n~~~~~tl~~~~~~~~~~~vr~~~~~~S~~v~--i~~~~~sr~~rq~~~es~d~S~~s~~ss~g~~~~  223 (405)
T KOG2060|consen  146 SVQQTEVARPNQNPIGKATLQLDHSEAGTKQVRSTIIGRSTEVG--IALEMRSRETRQRSLESTDGSINSLESSEGLRIL  223 (405)
T ss_pred             CcccccccccccCcccccccccCCccCCceEEEeeccccceecc--ccccccchhhhcccccccccccccCCccccceec
Confidence            456677788899999999999884444 4555555441110111  122222111110  000         01122344


Q ss_pred             cCccc--C--------------------CCcccceEEEEEEEEcCCeEEEEEceecCCCC---CCCCCCCEEEEEEEecC
Q psy3954         147 PLTPV--T--------------------QDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTH  201 (268)
Q Consensus       147 ~L~~~--~--------------------~~~~~~G~i~v~l~~~~~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~  201 (268)
                      +....  +                    ......|.|++.+.-..+.+.|.|++|++|..   ....++|||+|++..++
T Consensus       224 P~~r~~sds~~~~FvDglGP~q~VgRq~la~P~mg~iq~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g  303 (405)
T KOG2060|consen  224 PGLRLPSDSPRGDFVDGLGPAQLVGRQTLAAPNMGDIQIALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENG  303 (405)
T ss_pred             ccccccccCchhhhhcccCchhhhhhhhhcCcccccchhhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCC
Confidence            43221  0                    01223578888877779999999999999952   23358999999999666


Q ss_pred             CcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEe-cCCC-CCeeeEEEEEeCCccCCC
Q psy3954         202 NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHH-DISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       202 ~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d-~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ....+.+|+..++|++|.|.....|.-+.+ -.-|.++||- +.+. .+.|+|.+++-+.++..+
T Consensus       304 ~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls  367 (405)
T KOG2060|consen  304 FCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLS  367 (405)
T ss_pred             ceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEeccccccchHHHhhHHHHHhhhhccc
Confidence            666789999999999999988777753221 1119999995 6666 889999998888887664

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.50  E-value=2.7e-07  Score=67.30  Aligned_cols=92  Identities=21%  Similarity=0.366  Sum_probs=69.6

Q ss_pred             EEEEEEcccCccc-------cC---------CCCCCceE---------EEeeecccCCCCCCccCcEEEEEec-------
Q psy3954          56 LRIRIQYTADHIL-------QP---------HYYEDLCT---------QILNSPSVNPVTSPFFGEEFQFDIP-------  103 (268)
Q Consensus        56 L~V~v~~~a~~L~-------~~---------~~~~dyv~---------~~~~T~~~~~t~nP~wne~f~f~v~-------  103 (268)
                      |.|.|+ +|.+|.       ..         -|.+.||+         +..+|+++-++-.|.|+.+++|.++       
T Consensus         1 lsv~I~-RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIH-RASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEee-hhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            467888 999987       00         11112665         7889999999999999999999876       


Q ss_pred             -CC--------CcEEEEEEEeCCCC---------CCCCceeEEEEEeccccc-cccCccceecC
Q psy3954         104 -RR--------FRHLAVYAYDRDRT---------SKTDRVLGKVTIQRSDLH-RISNKEHWFPL  148 (268)
Q Consensus       104 -~~--------~~~l~~~v~d~d~~---------~~~d~~iG~~~i~l~~l~-~~~~~~~w~~L  148 (268)
                       ..        ...+.|+||+....         -..|-.||.+.||+.+|. ...+...|+++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence             11        57899999998621         135668899999999987 45678899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1013|consensus

Probab=98.49  E-value=1.9e-07  Score=78.17  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=68.5

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDR  116 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~  116 (268)
                      ...|.|+++ +|..|.  |++|.+| ||.          .+++|.+.++|+||+||++|.|.+.+.   ...+.+.|||.
T Consensus       232 ~~~l~vt~i-Rc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  232 TPGLIVTII-RCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCceEEEEE-EeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            567899999 999998  9999999 998          678999999999999999999998887   78899999999


Q ss_pred             CCCCCCCceeEEEEE
Q psy3954         117 DRTSKTDRVLGKVTI  131 (268)
Q Consensus       117 d~~~~~d~~iG~~~i  131 (268)
                      + .....+++|-+..
T Consensus       311 ~-~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  311 D-IGKSNDSIGGSML  324 (362)
T ss_pred             C-CCcCccCCCcccc
Confidence            9 7767888886554

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.14  E-value=5.1e-06  Score=60.71  Aligned_cols=91  Identities=23%  Similarity=0.365  Sum_probs=68.4

Q ss_pred             EEEEEceecCCCC---------C------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC------
Q psy3954         172 LMVNVNEASGLTQ---------V------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL------  230 (268)
Q Consensus       172 L~v~v~~a~~L~~---------~------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~------  230 (268)
                      |.|.|++|.+|..         .      .-..++||++.+. .-.+.+.++|+++.++-.|.|+..++|+++.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lS-Fl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLS-FLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEec-cCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            4688999988841         1      1226999999976 2223567899999999999999999999872      


Q ss_pred             -------CCCc--eEEEEEEecCCC-----------CCeeeEEEEEeCCccCC
Q psy3954         231 -------GDPI--ELVVSLHHDISG-----------LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       231 -------~~~~--~l~i~V~d~~~~-----------~~~~lG~~~l~l~~~~~  263 (268)
                             +.+.  ++.++||+....           +|-+||.+.||+..+..
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~  132 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT  132 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh
Confidence                   1122  299999986532           56689999999988855

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=98.03  E-value=7.2e-06  Score=76.39  Aligned_cols=83  Identities=10%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             cCCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~  121 (268)
                      .+-.|.+.++++ +|+ .    ...| |+.      +.+||.+.++|+||+|||+..|.+... ....+|.|||.+ .++
T Consensus        50 ~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s  122 (644)
T PLN02964         50 EDFSGIALLTLV-GAE-M----KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN-RLS  122 (644)
T ss_pred             ccccCeEEEEee-hhh-h----ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC-CCC
Confidence            344688999999 886 2    2457 655      899999999999999999999997776 556799999999 899


Q ss_pred             CCceeEEEEEeccccccc
Q psy3954         122 TDRVLGKVTIQRSDLHRI  139 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~  139 (268)
                      .++.+|.+.+++.++...
T Consensus       123 ~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             HHHhhhheeecHhhccHH
Confidence            999999999988776643

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=98.03  E-value=0.0011  Score=57.52  Aligned_cols=197  Identities=16%  Similarity=0.197  Sum_probs=129.2

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC--------CcEEEEEEEeCCCCCC
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l~~~v~d~d~~~~  121 (268)
                      +.|.|+ +|++.+.. ...+ .|.     +...|..+..+-.|.||.+..+++...        ...|++++|..|..-+
T Consensus         2 ivl~i~-egr~F~~~-~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSIL-EGRNFPQR-PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEe-cccCCCCC-CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            578999 99999822 1233 444     788899999999999999999987654        5779999998873345


Q ss_pred             CCceeEEEEEecccc---ccc--cCccceecCcccCCC-cccceEEEEEEEEc---------------------------
Q psy3954         122 TDRVLGKVTIQRSDL---HRI--SNKEHWFPLTPVTQD-SEVQGKIQIGVLST---------------------------  168 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~-~~~~G~i~v~l~~~---------------------------  168 (268)
                      +.+.||.+.++|+..   ..+  .....|++|-..... ....-+|.+.+..+                           
T Consensus        80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~  159 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPP  159 (340)
T ss_pred             cceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcc
Confidence            667999999999988   433  456789998554211 11233444444433                           


Q ss_pred             -------------------------------CCeEEEEEceecCCCCC-----C---CCCCCEEEEEEEecCCcceeeec
Q psy3954         169 -------------------------------PTSLMVNVNEASGLTQV-----N---GQCDPTAMVTVHYTHNKSDVQKS  209 (268)
Q Consensus       169 -------------------------------~~~L~v~v~~a~~L~~~-----~---g~~dpyv~v~l~~~~~~~~~~kT  209 (268)
                                                     ...|.|++..|.||...     .   +...-|....+.     .....|
T Consensus       160 ~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ysll-----Gn~Vt~  234 (340)
T PF12416_consen  160 PNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLL-----GNDVTT  234 (340)
T ss_pred             cccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEec-----CcEeEe
Confidence                                           33466777778877411     1   123445555555     234566


Q ss_pred             eeccCCCCCccc--eEEEEEccC---------CCCceEEEEEEecCCCCCeeeEEEEEeCCccCC
Q psy3954         210 KVKKKSHSPVFN--ESFMFDRSL---------GDPIELVVSLHHDISGLNVFLGEVHIPLNNKET  263 (268)
Q Consensus       210 ~v~~~t~nP~~n--e~f~f~v~~---------~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~  263 (268)
                      .......+|.|-  +...+.+..         .+...|.|-++-    .+..||.+.+++..+..
T Consensus       235 ~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~  295 (340)
T PF12416_consen  235 EPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLP  295 (340)
T ss_pred             eeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----CCcEEEEEEEEhhhccC
Confidence            666777778773  333355532         222237777776    47789999999988854

>KOG3837|consensus

Probab=97.96  E-value=1.2e-05  Score=69.43  Aligned_cols=112  Identities=21%  Similarity=0.286  Sum_probs=86.7

Q ss_pred             eEEEEEEEcccCccccCCCC--CC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC------------CcE
Q psy3954          54 GTLRIRIQYTADHILQPHYY--ED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR------------FRH  108 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~--~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~------------~~~  108 (268)
                      ..|.+.|+ ++.+++-.+|.  .| |+.          ++.+|.+++.|.+|.|+|.|.+.+...            ...
T Consensus       367 ~elel~iv-rg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  367 QELELAIV-RGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hHhHHHHh-hcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            45778888 88888823333  34 777          678899999999999999999998773            356


Q ss_pred             EEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +.|++|+..+.+.+|.++|.+.+.|..|...-+....++|....  ..+.|.|.+.+...
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGR--K~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGR--KAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccc--cccCCeeEEEEEEe
Confidence            99999999967788999999999999888666666777775433  34568888777653

>PLN02964 phosphatidylserine decarboxylase

Probab=97.74  E-value=5.7e-05  Score=70.54  Aligned_cols=86  Identities=12%  Similarity=0.068  Sum_probs=70.6

Q ss_pred             cCCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         168 TPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       168 ~~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      ..|.+.++++.|+  ++   ..|||..+... +   .++++|.+.++|.||+||+...|.+...+..-..|+|||.+.+ 
T Consensus        52 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~-g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         52 FSGIALLTLVGAE--MK---FKDKWLACVSF-G---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             ccCeEEEEeehhh--hc---cCCcEEEEEEe-c---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            3888999999988  22   25888665544 1   6789999999999999999988888776666689999999999 


Q ss_pred             CCeeeEEEEEeCCccC
Q psy3954         247 LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~  262 (268)
                      .++++|.+.++|..+.
T Consensus       123 ~n~lv~~~e~~~t~f~  138 (644)
T PLN02964        123 KNTLVGYCELDLFDFV  138 (644)
T ss_pred             HHHhhhheeecHhhcc
Confidence            9999999999876553

>PLN02352 phospholipase D epsilon

Probab=97.73  E-value=0.00011  Score=69.26  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             CCeEEEEEceecCCCCC-------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954         169 PTSLMVNVNEASGLTQV-------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH  241 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~-------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~  241 (268)
                      -|.|.++|++|+-+...       ....||||.|.+.    .....+|   .+..||.|+|+|..++......++.|+|.
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk   81 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLK   81 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence            46778888888744221       1124999999997    2345677   55669999999998886544345999999


Q ss_pred             ecCCCCCeeeEEEEEeCCccCCC
Q psy3954         242 HDISGLNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       242 d~~~~~~~~lG~~~l~l~~~~~~  264 (268)
                      |    +-.+||.+.||...+..|
T Consensus        82 ~----~~~~ig~~~~p~~~~~~g  100 (758)
T PLN02352         82 T----KCSILGRFHIQAHQIVTE  100 (758)
T ss_pred             c----CCeEEEEEEEEHHHhhCC
Confidence            8    478999999999988775

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.68  E-value=0.00041  Score=54.61  Aligned_cols=93  Identities=13%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      ...+.|+|+.+.+|.-.....+.||++.+..++.. .....|+.+....++.|||.+.|++...++..   |.|+||+..
T Consensus         7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            35688999999999753444788999988866543 23456666665677999999999998877776   999999864


Q ss_pred             CC-----------------CCeeeEEEEEeCCcc
Q psy3954         245 SG-----------------LNVFLGEVHIPLNNK  261 (268)
Q Consensus       245 ~~-----------------~~~~lG~~~l~l~~~  261 (268)
                      ..                 ....||.+.++|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            32                 247999999987664

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>KOG2060|consensus

Probab=97.67  E-value=2.1e-05  Score=67.26  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=84.3

Q ss_pred             CCCeEEEEEEEcccCccc---cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeC
Q psy3954          51 QDLGTLRIRIQYTADHIL---QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR  116 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~---~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~  116 (268)
                      ...|.|.|.|+ +|++|.   .....++ ||+          .+.+|+...+|++|.+-+...|+-++....|.+.||-.
T Consensus       266 d~~g~l~vEii-~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd  344 (405)
T KOG2060|consen  266 DSKGDLEVEII-RARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD  344 (405)
T ss_pred             cccCceeEEEE-ecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence            34689999999 999998   3333566 888          67889999999999999999999888889999999965


Q ss_pred             CCCCCCCceeEEEEEecccccccc-CccceecCcccC
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRIS-NKEHWFPLTPVT  152 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~  152 (268)
                      -+.+.++.|+|.+.+-+.++.... ....|++|-+..
T Consensus       345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            436778899999999999998655 678999986654

>KOG1265|consensus

Probab=97.67  E-value=0.0001  Score=69.36  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=74.5

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCC--cceeeeceecc-CCCCCccc-eEEEEE-ccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHN--KSDVQKSKVKK-KSHSPVFN-ESFMFD-RSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~-~t~nP~~n-e~f~f~-v~~~~~~~l~i~V~d~  243 (268)
                      .+.+.|+|+.+.=|.+..  ...||.|.|..-+.  ..+.++|+++. ++.||+|+ |.|.|. |-.+++..|.|.||+.
T Consensus       702 A~t~sV~VISgqFLSdrk--vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE  779 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK--VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE  779 (1189)
T ss_pred             EeeEEEEEEeeeeccccc--cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence            677899999998886543  34899999974333  33567787775 78899998 568886 6677888899999997


Q ss_pred             CCCCCeeeEEEEEeCCccCCCCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~~~~  267 (268)
                         +..+||+=.+|++.+..|-.|
T Consensus       780 ---ggK~ig~RIlpvd~l~~GYrh  800 (1189)
T KOG1265|consen  780 ---GGKFIGQRILPVDGLNAGYRH  800 (1189)
T ss_pred             ---CCceeeeeccchhcccCccee
Confidence               678999999999999987654

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.65  E-value=0.00049  Score=53.21  Aligned_cols=92  Identities=14%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      ...+.|.|+.+.+++-. ..++.||++.+..++... ....|+.+.. .++.|||.+.|++...++..   |.|+||+..
T Consensus         7 ~~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           7 NSNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            45688999999998732 347999999988654422 2334554443 67999999999988777766   999999965


Q ss_pred             CC-----CCeeeEEEEEeCCccC
Q psy3954         245 SG-----LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       245 ~~-----~~~~lG~~~l~l~~~~  262 (268)
                      ..     ....||.+.++|-+..
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECCC
Confidence            42     2357999999886643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1265|consensus

Probab=97.54  E-value=0.00012  Score=68.99  Aligned_cols=108  Identities=14%  Similarity=0.288  Sum_probs=78.9

Q ss_pred             ccccccceEEEeeeeeeccCcccccccccccCC----------CeEEEEEEEcccCccccCCCCCC-ceE----------
Q psy3954          20 VNHATYKLMVKHTAYKYYLQPRKRLTANQIIQD----------LGTLRIRIQYTADHILQPHYYED-LCT----------   78 (268)
Q Consensus        20 ~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~----------~~~L~V~v~~~a~~L~~~~~~~d-yv~----------   78 (268)
                      +|.+.|..+.-.   .|.+.|.-...+...+..          .+.+.|+|+ ++.-|.+.  ... ||.          
T Consensus       662 lN~g~FEyNG~s---GYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VI-SgqFLSdr--kvgtyVEVdmfgLP~Dt  735 (1189)
T KOG1265|consen  662 LNMGMFEYNGGS---GYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVI-SGQFLSDR--KVGTYVEVDMFGLPTDT  735 (1189)
T ss_pred             hhhhheeecCCc---cceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEE-eeeecccc--ccCceEEEEecCCCchh
Confidence            466666665554   888888876666654322          356889999 99888622  223 665          


Q ss_pred             --EEeeecccCC-CCCCccCc-EEEEE--ecCCCcEEEEEEEeCCCCCCCCceeEEEEEecccccc
Q psy3954          79 --QILNSPSVNP-VTSPFFGE-EFQFD--IPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR  138 (268)
Q Consensus        79 --~~~~T~~~~~-t~nP~wne-~f~f~--v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~  138 (268)
                        ..+||+++.+ +.||+|+| .|.|.  +-++-..|+|.||+.+     ..+||+=.+|+..+..
T Consensus       736 ~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg-----gK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  736 IRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG-----GKFIGQRILPVDGLNA  796 (1189)
T ss_pred             hhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC-----CceeeeeccchhcccC
Confidence              6788988875 68999986 68887  3344688999999998     3489999999998864

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.46  E-value=0.00082  Score=52.10  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecCCC-CCeeeEEEEEeCCc
Q psy3954         186 NGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDISG-LNVFLGEVHIPLNN  260 (268)
Q Consensus       186 ~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~~~-~~~~lG~~~l~l~~  260 (268)
                      ...++.||.+.+..++.. .....|+.+.-+..+.|||...|++...++..   |.|+||+.+.. +...||.+.+++-+
T Consensus        27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            344789999999865442 23456666666677999999999998887776   99999998665 67899999999876


Q ss_pred             c
Q psy3954         261 K  261 (268)
Q Consensus       261 ~  261 (268)
                      .
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.40  E-value=0.0013  Score=50.98  Aligned_cols=93  Identities=20%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             CeEEEEEceecCCCC-CCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         170 TSLMVNVNEASGLTQ-VNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~-~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      ..+.|.+....++.. .....+.||++.+..++.. .....|.......++.|||.+.|++...++..   |.|+||+.+
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            456777777777754 3445788999988865542 23344544444467999999999987777765   999999975


Q ss_pred             CC---CCeeeEEEEEeCCccC
Q psy3954         245 SG---LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       245 ~~---~~~~lG~~~l~l~~~~  262 (268)
                      ..   ....||.+.++|-+..
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             cCCCCcceEEEEEeEEeEccc
Confidence            54   3589999999987653

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.31  E-value=0.005  Score=47.15  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             cCCCeEEEEEEEcccCccccC-C---CCCC--ceE------EEeeecccCCCCCCccCcEEEEEecCC------------
Q psy3954          50 IQDLGTLRIRIQYTADHILQP-H---YYED--LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR------------  105 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~~~-~---~~~d--yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~------------  105 (268)
                      .+....|.++|. .++...+. .   +..+  +..      +.++|+.+..+.+|.|+|.|-|+++..            
T Consensus         5 ~~~~~yL~l~vl-gGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    5 DPGRRYLHLRVL-GGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CCCceEEEEEEe-CchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence            344678999999 98877611 1   2222  222      899999999999999999999997765            


Q ss_pred             --CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC---cccceEEEEEEEE
Q psy3954         106 --FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD---SEVQGKIQIGVLS  167 (268)
Q Consensus       106 --~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~---~~~~G~i~v~l~~  167 (268)
                        .+.+++.|.-.| ..+...++|.-.+.-+.+........++.++.....   ....|-|.+++..
T Consensus        84 s~~~pihivli~~d-~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL  149 (156)
T PF15627_consen   84 SISDPIHIVLIRTD-PSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL  149 (156)
T ss_pred             cCCCceEEEEEEec-CCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe
Confidence              356888888888 565667889888876666544443334444332222   2256877777654

>KOG3837|consensus

Probab=97.10  E-value=0.00035  Score=60.68  Aligned_cols=95  Identities=18%  Similarity=0.174  Sum_probs=75.7

Q ss_pred             CCeEEEEEceecCCCCCCCC--CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-CC----c----e--
Q psy3954         169 PTSLMVNVNEASGLTQVNGQ--CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-DP----I----E--  235 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-~~----~----~--  235 (268)
                      ...|.+.|.++.+++..+|.  .|.||++.+........+.+|.+++.+.+|.|+|.|...+... ..    .    .  
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            66788899999998755544  6899999887554456678999999999999999999887641 11    1    1  


Q ss_pred             EEEEEEecCCC--CCeeeEEEEEeCCccCC
Q psy3954         236 LVVSLHHDISG--LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       236 l~i~V~d~~~~--~~~~lG~~~l~l~~~~~  263 (268)
                      +.|++++...+  +|.++|.+.+.|.-+..
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len  475 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILEN  475 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhc
Confidence            99999999888  89999999998765543

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.08  E-value=0.0074  Score=47.54  Aligned_cols=93  Identities=12%  Similarity=0.049  Sum_probs=64.0

Q ss_pred             CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      ...++|.|..+..+. +.......||++.+..+.......+|..+.-+.+|.|||.+.|++...++..   |.|+||+..
T Consensus         9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399           9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            456778888887432 2232345788887776444333446776676778999999999998888776   999999852


Q ss_pred             CC-----------------CCeeeEEEEEeCCcc
Q psy3954         245 SG-----------------LNVFLGEVHIPLNNK  261 (268)
Q Consensus       245 ~~-----------------~~~~lG~~~l~l~~~  261 (268)
                      ..                 .+..||.+.+.|-+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcC
Confidence            21                 256788888877554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1327|consensus

Probab=97.03  E-value=0.0024  Score=57.91  Aligned_cols=79  Identities=16%  Similarity=0.325  Sum_probs=61.0

Q ss_pred             EEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecC-----CCcEEEEEEEeCCC
Q psy3954          58 IRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPR-----RFRHLAVYAYDRDR  118 (268)
Q Consensus        58 V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~-----~~~~l~~~v~d~d~  118 (268)
                      +...++|++|.  +..+.+| |..           ..++|.++++++||.|-. |.+.+..     ....+.+.+||++ 
T Consensus       139 ~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~-  216 (529)
T KOG1327|consen  139 VQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD-  216 (529)
T ss_pred             eeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccC-
Confidence            33343677787  7788888 776           578999999999999975 3332211     1578999999999 


Q ss_pred             CCCCCceeEEEEEecccccc
Q psy3954         119 TSKTDRVLGKVTIQRSDLHR  138 (268)
Q Consensus       119 ~~~~d~~iG~~~i~l~~l~~  138 (268)
                      ..+++++||++..++.++..
T Consensus       217 ~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  217 SNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCCCcCceeEecccHHHhcc
Confidence            77888999999999998864

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.85  E-value=0.007  Score=46.82  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             eEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954          54 GTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD  117 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d  117 (268)
                      ..++|+|+ +|++++ ....+| ||.           ....|+.+.. .+|.|||-..|++.-.    ...|.|.||+..
T Consensus         8 ~~~~v~i~-~~~~~~-~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           8 SNLRIKIL-CATYVN-VNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCeEEEEE-eeccCC-CCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            57899999 999998 123467 887           2224444443 6799999998875544    689999999976


Q ss_pred             CCC---CCCceeEEEEEeccccc
Q psy3954         118 RTS---KTDRVLGKVTIQRSDLH  137 (268)
Q Consensus       118 ~~~---~~d~~iG~~~i~l~~l~  137 (268)
                      ...   .....||.+.++|-+-.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECCC
Confidence            211   12356999999877643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.84  E-value=0.0046  Score=47.05  Aligned_cols=72  Identities=22%  Similarity=0.138  Sum_probs=52.4

Q ss_pred             CCEEEEEEEecCCcce--eeeceeccCC-CCCccceEEEEEccCCCCce---EEEEEEecCCC-CC----eeeEEEEEeC
Q psy3954         190 DPTAMVTVHYTHNKSD--VQKSKVKKKS-HSPVFNESFMFDRSLGDPIE---LVVSLHHDISG-LN----VFLGEVHIPL  258 (268)
Q Consensus       190 dpyv~v~l~~~~~~~~--~~kT~v~~~t-~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~~~-~~----~~lG~~~l~l  258 (268)
                      +.||.+.+..++....  ...|.....+ .++.|||.+.|++...++..   |.|+||..+.. ..    ..||.+.+++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            4578888886665332  3467766666 78999999999987666655   99999997766 44    7999999998


Q ss_pred             Ccc
Q psy3954         259 NNK  261 (268)
Q Consensus       259 ~~~  261 (268)
                      -+.
T Consensus        83 Fd~   85 (142)
T PF00792_consen   83 FDY   85 (142)
T ss_dssp             B-T
T ss_pred             ECC
Confidence            765

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.74  E-value=0.0087  Score=47.11  Aligned_cols=81  Identities=15%  Similarity=0.228  Sum_probs=55.8

Q ss_pred             eEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954          54 GTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD  117 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d  117 (268)
                      ..++|+|+ .+.+|.-.....+ ||.           ....|+.+.-+.+|.|||...|++.-.    ...|.|.||+..
T Consensus         8 ~~f~i~i~-~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           8 EKFSITLH-KISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCEEEEEE-EeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            57899999 9999972123355 666           334565555567799999999985544    688999999976


Q ss_pred             CCCC----------------CCceeEEEEEecccc
Q psy3954         118 RTSK----------------TDRVLGKVTIQRSDL  136 (268)
Q Consensus       118 ~~~~----------------~d~~iG~~~i~l~~l  136 (268)
                       ...                .+..||-+.++|-+-
T Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 -KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             -ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence             221                235777777776653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.65  E-value=0.015  Score=45.73  Aligned_cols=92  Identities=20%  Similarity=0.063  Sum_probs=65.6

Q ss_pred             CeEEEEEceecCCCCC--CCCCCCEEEEEEEecCCcc-eeeeceecc----CCCCCccceEEEEEccCCCCce---EEEE
Q psy3954         170 TSLMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKS-DVQKSKVKK----KSHSPVFNESFMFDRSLGDPIE---LVVS  239 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~--~g~~dpyv~v~l~~~~~~~-~~~kT~v~~----~t~nP~~ne~f~f~v~~~~~~~---l~i~  239 (268)
                      ..+.|.|..+.+++..  ....+-||.+.+..+++.. ....|+...    -...+.|||.+.|++...++..   |.|+
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            4578889999999743  3357899999998665532 233443221    1235779999999987777765   9999


Q ss_pred             EEecCCC----------CCeeeEEEEEeCCcc
Q psy3954         240 LHHDISG----------LNVFLGEVHIPLNNK  261 (268)
Q Consensus       240 V~d~~~~----------~~~~lG~~~l~l~~~  261 (268)
                      ||+....          ....||.+.++|-+.
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9986543          247999999998665

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.58  E-value=0.011  Score=45.79  Aligned_cols=82  Identities=22%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             eEEEEEEEcccCcccc-CCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeC
Q psy3954          54 GTLRIRIQYTADHILQ-PHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDR  116 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~-~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~  116 (268)
                      ..++|+|. .+.+++. .....+ ||.           ....|.......++.|||...|.+...    ...|.|.||+.
T Consensus         8 ~~~~i~i~-~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIH-GITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEE-eeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677777 7776652 233344 655           222344343346899999999984443    68899999998


Q ss_pred             CCCCC--CCceeEEEEEeccccc
Q psy3954         117 DRTSK--TDRVLGKVTIQRSDLH  137 (268)
Q Consensus       117 d~~~~--~d~~iG~~~i~l~~l~  137 (268)
                      + ..+  .+..||.+.++|=+-.
T Consensus        87 ~-~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 S-EPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             e-cCCCCcceEEEEEeEEeEccc
Confidence            7 343  4679999999887643

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1452|consensus

Probab=96.37  E-value=0.0075  Score=50.86  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCCeEEEEEEEcccCccc---cCCC-CCC-ceE----EEeeecccCCCCCC--ccCcEEEEEecCCCcEEEEEEEeCCCC
Q psy3954          51 QDLGTLRIRIQYTADHIL---QPHY-YED-LCT----QILNSPSVNPVTSP--FFGEEFQFDIPRRFRHLAVYAYDRDRT  119 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~---~~~~-~~d-yv~----~~~~T~~~~~t~nP--~wne~f~f~v~~~~~~l~~~v~d~d~~  119 (268)
                      ...|.|.+++. .+++|.   ...| .-+ ||+    ...++++.-.+..|  .|.|.|..++... ..+.+-||.|+ .
T Consensus        48 s~tGiL~~H~~-~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~-p  124 (442)
T KOG1452|consen   48 SSTGILYFHAY-NGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWP-P  124 (442)
T ss_pred             cccceEEEEEe-cccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecC-c
Confidence            44789999999 999998   2234 445 999    45555555556666  6999999987766 77888889888 3


Q ss_pred             CCCCce
Q psy3954         120 SKTDRV  125 (268)
Q Consensus       120 ~~~d~~  125 (268)
                      -.+..+
T Consensus       125 q~RHKL  130 (442)
T KOG1452|consen  125 QRRHKL  130 (442)
T ss_pred             hhhccc
Confidence            333433

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.30  E-value=0.028  Score=43.06  Aligned_cols=91  Identities=18%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             CeEEEEEceecCCCC----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC------------C
Q psy3954         170 TSLMVNVNEASGLTQ----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD------------P  233 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~------------~  233 (268)
                      ..|++.|+.++.+.+    ..+..+..+.+++.-.   .+.++|+.+..+.+|.|+|.|.|++..+.            +
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~---~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR---GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec---CceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            357788888887752    2255666777776533   57899999999999999999999987653            2


Q ss_pred             ce-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         234 IE-LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       234 ~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +. |.+.|...|.. ...++|.-.+++.....
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~  117 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC  117 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence            22 88888887776 66899999888876644

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.15  E-value=0.019  Score=44.55  Aligned_cols=54  Identities=13%  Similarity=0.078  Sum_probs=42.3

Q ss_pred             eecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCCceeEEEEEecccc
Q psy3954          82 NSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL  136 (268)
Q Consensus        82 ~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l  136 (268)
                      +|+.+.-+..+.|||-..|.+.-.    +..|.|.||+.+ ..++...+|.+.++|-+-
T Consensus        50 ~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~-~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          50 QTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS-GTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             EccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec-CCCCceEEEEEEEeeECC
Confidence            555555567789999988885554    689999999998 455677999999987754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=96.15  E-value=0.061  Score=38.22  Aligned_cols=73  Identities=14%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      +.+.+..+.+.+-  ....++.||++.+..++... ....|..+.-...+.|||...|++...++..   |.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4556666666542  22235899999988655422 2345666666667999999999988877776   999999864

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.01  E-value=0.056  Score=43.02  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCC---ceeEEEEEecc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTD---RVLGKVTIQRS  134 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d---~~iG~~~i~l~  134 (268)
                      ..++|.+...+.+|.|+|++.+.++.+   ...|.|++++....-.+|   ..+|.+-+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            566788888899999999999999988   788999998865111222   46777777664

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.92  E-value=0.027  Score=44.81  Aligned_cols=56  Identities=18%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             EeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCC--ceeEEEEEeccc
Q psy3954          80 ILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTD--RVLGKVTIQRSD  135 (268)
Q Consensus        80 ~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d--~~iG~~~i~l~~  135 (268)
                      .+.|.+...+.+|.|+|+|.+.+|..   ...|.|++++....-+++  ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45788888999999999999999887   688999999987222222  689999999886

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.75  E-value=0.045  Score=47.62  Aligned_cols=84  Identities=11%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-------EEEEEEecC
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-------LVVSLHHDI  244 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-------l~i~V~d~~  244 (268)
                      +.+.|++|++++...+ ....+...+.     .....|..+..+-.|.||-...+.+....+..       |++++|-.+
T Consensus         2 ivl~i~egr~F~~~~~-~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR-HPIVVEAKFN-----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCCC-ccEEEEEEeC-----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            5789999999986532 4667777776     66788999999999999999999886544332       999999887


Q ss_pred             C-C-CCeeeEEEEEeCCcc
Q psy3954         245 S-G-LNVFLGEVHIPLNNK  261 (268)
Q Consensus       245 ~-~-~~~~lG~~~l~l~~~  261 (268)
                      . . .++.||.+.++|.+.
T Consensus        76 ~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             CCCCcceeccEEEEEcccc
Confidence            3 3 899999999999998

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.54  E-value=0.054  Score=42.53  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=56.1

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccC----CCCCCccCcEEEEEecCC----CcEEE
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVN----PVTSPFFGEEFQFDIPRR----FRHLA  110 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~----~t~nP~wne~f~f~v~~~----~~~l~  110 (268)
                      ...+.|+|. ++.+++  ......| |+.           ....|+...    -...+.|||...|.+.-.    ...|.
T Consensus         7 ~~~~~i~v~-~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVS-SLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEE-EeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            456889999 999998  3334567 777           222343221    123567999999985443    68899


Q ss_pred             EEEEeCCCCCC---------CCceeEEEEEecccc
Q psy3954         111 VYAYDRDRTSK---------TDRVLGKVTIQRSDL  136 (268)
Q Consensus       111 ~~v~d~d~~~~---------~d~~iG~~~i~l~~l  136 (268)
                      |.+|+.. ..+         .+..||-+.++|=+-
T Consensus        86 itl~~~~-~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTT-SSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEe-cCCccccccccccceEEEEEeEeeEcc
Confidence            9999977 333         356899999987764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.15  E-value=0.057  Score=42.88  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=43.0

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC-C-CceeEEEEEecc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK-T-DRVLGKVTIQRS  134 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~-~-d~~iG~~~i~l~  134 (268)
                      ..++|.+...+.+|.|+|++.+.++.+   ...|.|+.++.. ... . ...+|.+-+||-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S-~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS-TKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee-eccCCCCCceEEEEEeec
Confidence            356899999999999999999999988   688999998865 221 1 256787777764

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.05  E-value=0.083  Score=41.95  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC---CCeeeEEEEEeCCc
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG---LNVFLGEVHIPLNN  260 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~---~~~~lG~~~l~l~~  260 (268)
                      ...++|.+...+.+|.|+|++-..++.+..+.  |.|++++....   ....+|-+.+||-.
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            44678999999999999999999999887777  99988885433   23789999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.92  E-value=0.37  Score=36.32  Aligned_cols=107  Identities=16%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             eEEEEEEEcccCccccCCCCCC-ceE-E-------EeeecccC-CCCCCccCcEEEEEecCC---------CcEEEEEEE
Q psy3954          54 GTLRIRIQYTADHILQPHYYED-LCT-Q-------ILNSPSVN-PVTSPFFGEEFQFDIPRR---------FRHLAVYAY  114 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-~-------~~~T~~~~-~t~nP~wne~f~f~v~~~---------~~~l~~~v~  114 (268)
                      -.+.+.|+ +..++|.  .... ||. .       ...|.... .+-.-.|||+|.+.+...         ...+.|.|+
T Consensus         7 f~~~l~i~-~l~~~p~--~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    7 FQFDLTIH-ELENLPS--SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEE-EeECcCC--CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            45678888 8888873  1222 555 1       12222222 122348999999973321         457999999


Q ss_pred             eCCCCCCCCceeEEEEEeccccccc--cCccceecCcccCCCcccceEEEEEEEE
Q psy3954         115 DRDRTSKTDRVLGKVTIQRSDLHRI--SNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       115 d~d~~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      ... ..++...+|.+.++|++....  .....-++|...   ......|.+++.+
T Consensus        84 ~~~-~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~  134 (143)
T PF10358_consen   84 EVD-GSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISL  134 (143)
T ss_pred             Eec-CCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEE
Confidence            885 233336899999999999864  334455666554   1224556665543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=94.89  E-value=0.26  Score=38.97  Aligned_cols=55  Identities=20%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCC-----CCCceeEEEEEeccc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTS-----KTDRVLGKVTIQRSD  135 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~-----~~d~~iG~~~i~l~~  135 (268)
                      ..++|-+..+ .+|.|+|+|.+.+|..   ...|.|++++.. .-     .....+|.+.+||-+
T Consensus        53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~-~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVS-SKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccc-cccccCCCccceEEEEEEeccc
Confidence            4555555555 9999999999998877   688999999976 22     235678998888775

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.49  E-value=0.2  Score=39.47  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=28.3

Q ss_pred             eecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954          82 NSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD  117 (268)
Q Consensus        82 ~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d  117 (268)
                      +|+...-+.+|.|||-..|++.-.    ...|.|.||+..
T Consensus        49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            566666667899999988885544    689999999975

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.35  E-value=0.17  Score=40.41  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC--CC---eeeEEEEEeCC
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG--LN---VFLGEVHIPLN  259 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~--~~---~~lG~~~l~l~  259 (268)
                      ...++|.+.....+|.|+|++-..++.+..+.  |.|++++....  +|   ..+|-+.+||-
T Consensus        52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            55688889888999999999999999887777  99999885433  23   57999999986

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.31  E-value=0.45  Score=32.90  Aligned_cols=72  Identities=14%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQ  158 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~  158 (268)
                      ...+|.-... .+..|++.|.+++... .+|.|.||=.| .   ..+.|-..+.|++..    ...-.++.       ++
T Consensus        21 ~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-RELEI~VywrD-~---RslCav~~lrLEd~~----~~~~~~le-------pq   83 (98)
T cd08687          21 VVGQTQWKPK-SNQAWDQSFTLELERS-RELEIAVYWRD-W---RSLCAVKFLKLEDER----HEVQLDME-------PQ   83 (98)
T ss_pred             EEeecccccc-ccccccceeEEEeecc-cEEEEEEEEec-c---hhhhhheeeEhhhhc----ccceeccc-------cc
Confidence            4566665543 5778999999999887 99999999888 3   236787888888732    12223333       36


Q ss_pred             eEEEEEEEE
Q psy3954         159 GKIQIGVLS  167 (268)
Q Consensus       159 G~i~v~l~~  167 (268)
                      |.+...+.|
T Consensus        84 g~l~~ev~f   92 (98)
T cd08687          84 LCLVAELTF   92 (98)
T ss_pred             cEEEEEEEe
Confidence            777777665

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.23  E-value=0.15  Score=40.49  Aligned_cols=57  Identities=18%  Similarity=0.165  Sum_probs=37.0

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC--C--CeeeEEEEEeCCc
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG--L--NVFLGEVHIPLNN  260 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~--~--~~~lG~~~l~l~~  260 (268)
                      .....|.+...+.+|.|+|.|-..++......  |.|++++....  +  ...+|-+.+||-.
T Consensus        58 ~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   58 VTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             ceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45678888888899999999999998776665  99999996543  2  2799999999987

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=94.03  E-value=0.19  Score=39.67  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC------CCceeEEEEEeccc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK------TDRVLGKVTIQRSD  135 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~------~d~~iG~~~i~l~~  135 (268)
                      ..+.|.+...+.+|.|+|++.+.+|..   ...|.|+.++.+ .-.      ....+|.+-+||-+
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs-~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS-CQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee-ccccccCCCccceEEEEEEeeec
Confidence            566788999999999999999998887   678999999965 221      13567888777653

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=93.94  E-value=0.28  Score=35.30  Aligned_cols=84  Identities=15%  Similarity=0.098  Sum_probs=44.3

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC--------CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccC--ccceecC
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN--KEHWFPL  148 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~--~~~w~~L  148 (268)
                      +...|.++. ..+|.+|-+-.|.|...        ...+.++++..- . ..-..+|.+.+++..+....+  ...-..|
T Consensus        11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l   87 (107)
T PF11618_consen   11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-G-SDFETLAAGQISLRPLLESNGERIHGSATL   87 (107)
T ss_dssp             --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred             eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-c-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence            566777777 78999999999988776        578999999876 2 346789999999998874333  2233334


Q ss_pred             cccCCCcccceEEEEEEEE
Q psy3954         149 TPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       149 ~~~~~~~~~~G~i~v~l~~  167 (268)
                      ...  ..+.-|.|...++.
T Consensus        88 ~g~--~~~~~g~l~y~~rl  104 (107)
T PF11618_consen   88 VGV--SGEDFGTLEYWIRL  104 (107)
T ss_dssp             -BS--SS-TSEEEEEEEEE
T ss_pred             ecc--CCCeEEEEEEEEEe
Confidence            332  23367888776653

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=93.65  E-value=0.29  Score=38.84  Aligned_cols=56  Identities=14%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCC---------CCCceeEEEEEeccc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTS---------KTDRVLGKVTIQRSD  135 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~---------~~d~~iG~~~i~l~~  135 (268)
                      ..+.|.+...+.+|.|+|++.+.+|..   ...|.|+.++.+ .-         +.+..+|.+-+||-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs-c~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS-CDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec-cccccccccCCCccceEEEEEEeeec
Confidence            566788888999999999999998887   678999999975 11         123567888887764

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.43  E-value=0.19  Score=38.09  Aligned_cols=57  Identities=25%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             EeeecccCCC-CCCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCC----ceeEEEEEeccccc
Q psy3954          80 ILNSPSVNPV-TSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTD----RVLGKVTIQRSDLH  137 (268)
Q Consensus        80 ~~~T~~~~~t-~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d----~~iG~~~i~l~~l~  137 (268)
                      ..+|+.+.-+ .+|.|||...|.+.-.    ...|.|.||+.+ ....+    ..||-+.++|=+..
T Consensus        21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~-~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVD-SKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEE-CSTTT--EEEEEEEEEEESB-TT
T ss_pred             eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEec-CCCccccceeEEEEEEEEeECCC
Confidence            3366666655 7999999999985443    689999999988 44444    68999999887653

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.16  E-value=0.5  Score=35.59  Aligned_cols=89  Identities=17%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceec-cCCCCCccceEEEEEccC------CCCce--EEEEEE
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVK-KKSHSPVFNESFMFDRSL------GDPIE--LVVSLH  241 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~~ne~f~f~v~~------~~~~~--l~i~V~  241 (268)
                      .+.+.|.+..+++.  .....+|+....  ........|... -....-.|||.|.+.+..      ..++.  +.|.|+
T Consensus         8 ~~~l~i~~l~~~p~--~~~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    8 QFDLTIHELENLPS--SNGKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEEeECcCC--CCCEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            46678888888876  223344444333  222112233322 234557899999998653      11344  999999


Q ss_pred             ecCCC-CCeeeEEEEEeCCccCC
Q psy3954         242 HDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       242 d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ..... +...+|.+.|.|.+...
T Consensus        84 ~~~~~~~k~~lG~~~inLaey~~  106 (143)
T PF10358_consen   84 EVDGSGKKKVLGKVSINLAEYAN  106 (143)
T ss_pred             EecCCCccceEEEEEEEHHHhhC
Confidence            87433 33699999999988765

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=92.83  E-value=0.44  Score=33.74  Aligned_cols=61  Identities=20%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             EEEEEEcccCccc-c-CCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954          56 LRIRIQYTADHIL-Q-PHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD  117 (268)
Q Consensus        56 L~V~v~~~a~~L~-~-~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d  117 (268)
                      +.+.+. .+++.+ . ....++ ||.           ....|+.+.-...+.|||...|++.-.    ...|.|.+|+..
T Consensus        13 ~~~~~~-~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIA-LIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEE-EeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            445555 555655 2 222246 666           233565555556689999998875544    688999999865

Outlier of C2 family.

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.34  E-value=1.1  Score=35.62  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC----------CCeeeEEEEEeCCc
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG----------LNVFLGEVHIPLNN  260 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~----------~~~~lG~~~l~l~~  260 (268)
                      .....|.+...+.+|.|+|.+-..++....+.  |.|+.++....          ....+|-+.+||-.
T Consensus        55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            45678889989999999999999988766555  99999986421          23679999999865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=91.10  E-value=1.7  Score=34.34  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-------CCeeeEEEEEeCCc
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-------LNVFLGEVHIPLNN  260 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-------~~~~lG~~~l~l~~  260 (268)
                      .....|.+...+.+|.|+|.+-..++....+.  |.|+.++.+..       ....+|-+.+||-.
T Consensus        53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            45688899999999999999999998766555  99999984432       23679999888754

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>KOG4269|consensus

Probab=90.67  E-value=0.13  Score=49.26  Aligned_cols=91  Identities=10%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             eeeccccccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE----------EEeeecc
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT----------QILNSPS   85 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~   85 (268)
                      .+|+...+.++...|..     ....+.++.......|.+.+.+. +|..|.   .... ||.          .+.+|++
T Consensus       727 LQ~lSns~~plqt~s~i-----~~t~NddD~eSpl~ygflh~~vh-sat~lk---qs~~lY~Td~v~e~~~~~s~~st~~  797 (1112)
T KOG4269|consen  727 LQMLSNSCVPLQTVSNI-----PATYNDDDDESPLLYGFLHVIVH-SATGLK---QSRNLYCTDEVDEFGYFVSKASTRV  797 (1112)
T ss_pred             HHHHhcCCccccccccc-----ccccccccccCcccccceeeeec-cccccc---cccceeeehhhhhhcccccccccee
Confidence            46777777777777655     33455666666777899999999 999987   2234 777          6889999


Q ss_pred             cCCCCCCccCcEEEEEecCCCcEEEEEEEeCC
Q psy3954          86 VNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRD  117 (268)
Q Consensus        86 ~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d  117 (268)
                      +.+|..|.||++|+..+-.. +.+++..++.+
T Consensus       798 iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~  828 (1112)
T KOG4269|consen  798 IADTAEPQWNPEKHVPVIES-QSSRLEKTEKS  828 (1112)
T ss_pred             eecccCCCCChhcccchhhc-cccchhhhccc
Confidence            99999999999999776554 66666666654

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=90.53  E-value=0.84  Score=36.01  Aligned_cols=54  Identities=22%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             eeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC------CCeeeEEEEEeCCc
Q psy3954         206 VQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG------LNVFLGEVHIPLNN  260 (268)
Q Consensus       206 ~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~------~~~~lG~~~l~l~~  260 (268)
                      .++|-+..+ .+|.|+|.|-..++......  |.|++++....      ....+|-+.+||-.
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            344444444 89999999999997765444  99999996532      46899999999987

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A

Probab=85.22  E-value=2.7  Score=31.95  Aligned_cols=93  Identities=16%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCCc--ceeeeceecc--CCCCCccceEEEEEccCCCCce---EEEEEEec
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK--SDVQKSKVKK--KSHSPVFNESFMFDRSLGDPIE---LVVSLHHD  243 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~--~~~~kT~v~~--~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~  243 (268)
                      .|.|.|-+.. |.+.....|||+.|++....+.  ...+.|.+..  ...--.||.....+.+.+.+..   +.|++.++
T Consensus        14 ~l~v~Iekig-lkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~   92 (147)
T PF14186_consen   14 YLSVFIEKIG-LKDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHY   92 (147)
T ss_dssp             EEEEEEEEEE--TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEE
T ss_pred             eEEEEEEEEE-ECChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEee
Confidence            3455555554 7676667899999999854442  3456676652  2222346766666655555544   89999997


Q ss_pred             CCC--CCeeeEEEEEeCCccCCC
Q psy3954         244 ISG--LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       244 ~~~--~~~~lG~~~l~l~~~~~~  264 (268)
                      ...  +-...+-+.++++++..|
T Consensus        93 K~kk~k~S~kcw~fme~dei~~g  115 (147)
T PF14186_consen   93 KPKKKKTSTKCWAFMELDEIKPG  115 (147)
T ss_dssp             ETTTTCEEEEEEEEEEGGG--SE
T ss_pred             eccceeeeeeEEEEEEhhhccCC
Confidence            665  344566777788777553

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=84.50  E-value=8.1  Score=30.11  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             EeeecccCCCC-----CCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCCceeEEEEEec
Q psy3954          80 ILNSPSVNPVT-----SPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQR  133 (268)
Q Consensus        80 ~~~T~~~~~t~-----nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d~~iG~~~i~l  133 (268)
                      ..+|.+...+.     .-.||..|.+.+...    -..|.|+||..| ..+++.+.|...+.+
T Consensus        40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D-~~gr~~~~GYG~~~l  101 (168)
T PF07162_consen   40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLD-SWGRDRVEGYGFCHL  101 (168)
T ss_pred             eEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEc-ccCCeEEeEEeEEEe
Confidence            45666654332     346998877774433    468999999999 899999998765544

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG0694|consensus

Probab=83.82  E-value=0.45  Score=44.72  Aligned_cols=81  Identities=10%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEecccccc-ccCccceecCcccCCCccc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR-ISNKEHWFPLTPVTQDSEV  157 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~  157 (268)
                      +...+.+.+.+..|.|+|+|..++... ..+.+.|++.. ....+.+...+.+..+++.. ....+.|..+.+       
T Consensus        40 ~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~-~~~~~~~~a~~~~~~e~~k~~~~~~~~w~~~~~-------  110 (694)
T KOG0694|consen   40 QGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKS-PDPKALSEAQLSLQEESQKLLALEQRLWVLIEE-------  110 (694)
T ss_pred             ecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecC-CcchhhHHHhHHHHHHHHHHHhhhhhhcccccc-------
Confidence            444667788899999999999996655 88888898876 45555555555554444432 223556877654       


Q ss_pred             ceEEEEEEEEc
Q psy3954         158 QGKIQIGVLST  168 (268)
Q Consensus       158 ~G~i~v~l~~~  168 (268)
                      .|++...+.+.
T Consensus       111 ~g~~~~~~~~~  121 (694)
T KOG0694|consen  111 LGTLLKPAALT  121 (694)
T ss_pred             ccceeeeeccc
Confidence            47777766654

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=82.90  E-value=9.5  Score=29.76  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CCCEEEEEEEecCCcceeeeceeccC--CCCCccceEEEEEccCCCCce-EEEEEEecCCCCCeeeEEEEEeCCccCC
Q psy3954         189 CDPTAMVTVHYTHNKSDVQKSKVKKK--SHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGLNVFLGEVHIPLNNKET  263 (268)
Q Consensus       189 ~dpyv~v~l~~~~~~~~~~kT~v~~~--t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~~~~lG~~~l~l~~~~~  263 (268)
                      ..-|+++.+.    ...+.+|+...-  ...-.|||.|.+.+..  ..+ |.+.||......+..|+++.+|+-....
T Consensus        37 ~~~~ikl~~N----~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   37 TRYYIKLFFN----DKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             eeEEEEEEEC----CEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence            4567777776    144556665542  2234478998888743  444 9999999876689999999999766543

>KOG0904|consensus

Probab=81.90  E-value=3.2  Score=40.38  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=51.0

Q ss_pred             CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEec
Q psy3954         169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~  243 (268)
                      ...+.|.++.+.++. +....-..+|++.+..|... .+...|+.+..+.+|.||+.+.|++...++..   |.|.||--
T Consensus       342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v  421 (1076)
T KOG0904|consen  342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV  421 (1076)
T ss_pred             CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence            677888888888764 22222334555555544433 33466777777889999999999998877776   77777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-31
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-30
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-14
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-19
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-07
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	6e-19
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	6e-07
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-17
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-07
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-17
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-17
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-17
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	9e-17
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-04
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-16
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	6e-08
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-16
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-16
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-15
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-06
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-15
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	5e-15
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-08
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-15
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-07
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-15
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	8e-15
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-05
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-14
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-08
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-14
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	8e-07
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-13
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	6e-05
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-13
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	5e-13
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-11
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-10
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-11
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	7e-08
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-10
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-11
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-09
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	6e-11
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-10
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-10
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	8e-05
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-10
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	5e-09
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-10
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-09
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-05
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-09
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-08
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-09
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-05
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	5e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-04

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  117 bits (294), Expect = 1e-31
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 13/181 (7%)

Query: 91  SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQR--SDLHRISNKEHW 145
           +P F E FQF +P      R L    YD DR S+   ++G+V +        +  ++  W
Sbjct: 67  NPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR-HDLIGQVVLDNLLELAEQPPDRPLW 125

Query: 146 FPLTPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTH 201
             +     +    G++   +   PT+  L V + +AS L    + G  DP    ++    
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185

Query: 202 NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP--IELVVSL-HHDISGLNVFLGEVHIPL 258
            +   +K+ +KK + +P +NE+ +FD +      + L +++  +D  G N  +G   +  
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245

Query: 259 N 259
            
Sbjct: 246 E 246

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 159 GKIQIGV--LSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G+I   +  L     L+V + +A  L     NG  DP   V ++   ++    ++KV +K
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPY--VKIYLLPDRKKKFQTKVHRK 64

Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETS 264
           + +P+FNE+F F   L +  +  +       D    +  +G+V +    +   
Sbjct: 65  TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  113 bits (284), Expect = 3e-30
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 12/189 (6%)

Query: 91  SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           +P F E+F F +P      + L +  YD DR SK   ++G+  +  + +      E W  
Sbjct: 66  NPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRD 124

Query: 148 LTP-VTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN 202
           L     ++ E  G I   +   PT+  L V + EA  L    V G  DP   + +     
Sbjct: 125 LQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK 184

Query: 203 KSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVSL-HHDISGLNVFLGEVHIPLN 259
           +   +K+ +KK + +P +NESF F+        +++VV++  +D  G N  +G+V +  N
Sbjct: 185 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244

Query: 260 NKETSSSWW 268
           +       W
Sbjct: 245 STGAELRHW 253

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 155 SEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSK 210
           SE  GK+Q  +     +  L+V + +A+ L    + G  DP   V V    +K    ++K
Sbjct: 2   SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKKKKFETK 59

Query: 211 VKKKSHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLN--NKETSS 265
           V +K+ +PVFNE F F     +     + +     D    +  +GE  +P+N  +    +
Sbjct: 60  VHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 119

Query: 266 SWW 268
             W
Sbjct: 120 EEW 122

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 154 DSEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKV 211
             E +G+I I        L+V V +A  L     NG  DP   + +         QK+K 
Sbjct: 15  SMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 74

Query: 212 KKKSHSPVFNESFMFDRSLGDP-IELVVSL-HHDISGLNVFLGEVHIPLN--NKETSSSW 267
            K S +P +NE+F F     D    L V +   D++  N F+G +   ++   K     W
Sbjct: 75  IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW 134

Query: 268 W 268
           +
Sbjct: 135 F 135

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 92  PFFGEEFQFDIPR--RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149
           P + E F+F +    + R L+V  +D D TS+ D  +G ++   S+L + +  + WF L 
Sbjct: 81  PEWNETFRFQLKESDKDRRLSVEIWDWDLTSRND-FMGSLSFGISELQK-AGVDGWFKLL 138

Query: 150 P 150
            
Sbjct: 139 S 139

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 152 TQDSEVQGKIQIGVLSTPTSLMVNVNEASGLT---QVNGQCDPTAMVTVHYTHNKSDVQK 208
           T  +   G IQIG+      L V V  A  LT          P   V +         +K
Sbjct: 12  TLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71

Query: 209 SKVKKKSHSPVFNESFMFDRSL-GDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
           +++ +K+  P++ +S +FD S  G  ++++V   +       F+G   I L  
Sbjct: 72  TRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 92  PFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
           P + +   FD   + + L V  + D  R       +G   I   +L   S    W+ L P
Sbjct: 81  PLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKC-FMGVAQILLEELDLSSMVIGWYKLFP 139

Query: 151 VTQDSEVQGKIQIGVLSTPTSL 172
                       +   ++ +SL
Sbjct: 140 -PSSLVDPTLAPLTRRASQSSL 160

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 149 TPVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKS 204
             +    E  GK+Q  +        L+V + +A+ L    + G  DP   V V    +K 
Sbjct: 11  GILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKK 68

Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNK 261
              ++KV +K+ +PVFNE F F     +     LV++    D    +  +GE  +P+N  
Sbjct: 69  KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

Query: 262 ETSSSW 267
           +     
Sbjct: 129 DFGHVT 134

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
           P F E+F F +P      + L +  YD DR SK   ++G+  +  + +      E W  L
Sbjct: 82  PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRDL 140

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQ 207
               E  G I   +   PT+  L V + EA  L    V G  DP   + +     +   +
Sbjct: 5   GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK 64

Query: 208 KSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETS 264
           K+ +KK + +P +NESF F+        +++VV+ L +D  G N  +G+V +  N+    
Sbjct: 65  KTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

Query: 265 SSWW 268
              W
Sbjct: 125 LRHW 128

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKS 209
               +G++ + +    T+  L V V +A  L    V+G  DP   V +++   +   +K+
Sbjct: 12  IPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKT 71

Query: 210 KVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETSSS 266
            VKK + + VFNE F+FD        I +    L  +    N  +G + +    + +   
Sbjct: 72  HVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGG 131

Query: 267 WW 268
            W
Sbjct: 132 HW 133

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 73.9 bits (182), Expect = 9e-17
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQ 207
           +  +   G ++  +L    +  L   +  A GL     NG  DP   + +    +KS+  
Sbjct: 9   SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68

Query: 208 KSKVKKKSHSPVFNESFMFDR-SLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLN--NK 261
           ++K  + + +PV+NE+  +   +  D     L +S    D  G N F+GE    L     
Sbjct: 69  RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128

Query: 262 ETSSSWW 268
               ++ 
Sbjct: 129 NQRKNFN 135

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 92  PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           P + E  Q+  I     + + L +   D D+    +  +G+       L     K     
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGH-NEFIGETRFSLKKLKANQRKNFNIC 137

Query: 148 L 148
           L
Sbjct: 138 L 138

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 149 TPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKS 204
               ++ E  GK+Q  +     +  L+V + +A+ L    + G  DP   V V    +K 
Sbjct: 19  KEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKK 76

Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNK 261
              ++KV +K+ +PVFNE F F     +     LV++    D    +  +GE  +P+N  
Sbjct: 77  KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136

Query: 262 ETSSSW 267
           +     
Sbjct: 137 DFGHVT 142

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
           P F E+F F +P      + L +  YD DR SK D ++G+  +  + +      E W  L
Sbjct: 90  PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD-IIGEFKVPMNTVDFGHVTEEWRDL 148

Query: 149 TP 150
             
Sbjct: 149 QS 150

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQ 207
           +   E  G+IQ  V        L V + +A  L     +G  DP   V ++   +K    
Sbjct: 6   SGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDP--FVKIYLLPDKKHKL 63

Query: 208 KSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLN--NK 261
           ++KVK+K+ +P +NE+F+F+    + +    L +  L +D    N  +GEV IPLN  + 
Sbjct: 64  ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123

Query: 262 ETSSSWW 268
               ++W
Sbjct: 124 TQMQTFW 130

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 92  PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           P + E F F+  P      R L +   D DR S+ +  +G+V+I  + +     +  W  
Sbjct: 74  PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSR-NDPIGEVSIPLNKVDLTQMQTFWKD 132

Query: 148 LTPVTQDS 155
           L P    S
Sbjct: 133 LKPSGPSS 140

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 149 TPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKS 204
                D E +GKI + ++ +     L+V +     L     NG  DP   + +     K 
Sbjct: 14  VERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK 73

Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNK 261
              K+++KKK+ +P FNE F +D    D     L +S   +DI   N ++G   + ++ K
Sbjct: 74  AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133

Query: 262 ETSSSWW 268
                 W
Sbjct: 134 GERLKHW 140

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G++ + +   P++  ++VN+ +A  L    + G  DP   V + Y   + + +K+  KK+
Sbjct: 3   GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62

Query: 215 SHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           + +P+FNESF FD          ++++ +  D    N  +G++++   +       W
Sbjct: 63  NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHW 119

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKS 209
                G++ I +        L+V +  A  L   +     +P   +      +  + +++
Sbjct: 3   SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62

Query: 210 KVKKKSHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLN--NK 261
           K  KK+  P +N++F++            L ++L          + FLGE+ I L     
Sbjct: 63  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122

Query: 262 ETSSSWW 268
           +    W+
Sbjct: 123 DDEPHWY 129

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 85  SVNPVTSPFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRI 139
           ++ P     + + F +        R R L +  +D+ R  + +   LG++ I+      +
Sbjct: 68  TLEPK----WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-L 122

Query: 140 SNKEHWFPLTP 150
            ++ HW+ L  
Sbjct: 123 DDEPHWYKLQT 133

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL---------TQVNGQCDPTAMVTVHYT 200
           +      G +            L V V EA  L          Q     +P   V +   
Sbjct: 6   SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNP--YVKICLL 63

Query: 201 HNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIP 257
            ++ + +++ VK+K+  PVF E + F+    +     L+++ +  D    +  +G+V +P
Sbjct: 64  PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVP 123

Query: 258 LN--NKETSSSWW 268
           L   +      WW
Sbjct: 124 LCEVDLVKGGHWW 136

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
           P F E + F+IP    + R L +   D D+ S+   V+GKV++   ++  +     W  L
Sbjct: 81  PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR-HCVIGKVSVPLCEVDLVKGGHWWKAL 139

Query: 149 TPVTQDS 155
            P    S
Sbjct: 140 IPSGPSS 146

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 149 TPVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDV 206
           +  +       K+   +        L V   EA      +G CD     +V       + 
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH-DGGCDCYVQGSVANRTGSVE- 60

Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSL-HHDISGLNVFLGEVHIPLNNKET 263
            ++ +KK+     + E  +   +  +     L ++L   D    +   GE+ + L+    
Sbjct: 61  AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120

Query: 264 SS 265
             
Sbjct: 121 PL 122

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 4/67 (5%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
             + E     +         L +     DR S+   V G++ +             W  L
Sbjct: 72  TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHS-VAGELRLGLDGTSVPLGAAQWGEL 130

Query: 149 TPVTQDS 155
                 S
Sbjct: 131 KTSGPSS 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 69.0 bits (169), Expect = 6e-15
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 15/120 (12%)

Query: 156 EVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDP---------TAMVTVHYTHNKS 204
            + G+IQ+ +     +L++++ +A  L     NG  DP            V V    +  
Sbjct: 4   PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63

Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN 260
             +++K  +KS +P +N++ ++     + +    L V+   +D    N FLGEV I L++
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 92  PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           P + +   +  I       + L V  +D DR S  D  LG+V I  S    + N   W+P
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND-FLGEVLIDLSSTSHLDNTPRWYP 135

Query: 148 LTPVTQ 153
           L   T+
Sbjct: 136 LKEQTE 141

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 69.3 bits (170), Expect = 6e-15
 Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT---QVNGQCDPTAMVTVHYTHNKSDVQK 208
           +  V G+I   +     +  L+V+V E   L    +   + +P     +    ++   +K
Sbjct: 5   NIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRK 64

Query: 209 SKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNKE 262
           + +K+ + +P+++E+  ++       +  L  S  HH   G N FLGE  I +++ +
Sbjct: 65  TSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
           P + E  +++IP      R L    +   R  +    LG+  IQ          +H  PL
Sbjct: 74  PLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNT-FLGEAEIQMDSWKLDKKLDHCLPL 132

Query: 149 TPVTQDSE 156
                   
Sbjct: 133 HGKISAES 140

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 157 VQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVK 212
           + G++ I +        L+V +  A  L   +     +P   +      +  + +++K  
Sbjct: 3   LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV 62

Query: 213 KKSHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLN--NKETS 264
           KK+  P +N++F++            L ++L          + FLGE+ I L     +  
Sbjct: 63  KKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122

Query: 265 SSWW 268
             W+
Sbjct: 123 PHWY 126

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 92  PFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRISNKEHWF 146
           P + + F +        R R L +  +D+ R  + +   LG++ I+      + ++ HW+
Sbjct: 68  PKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-LDDEPHWY 126

Query: 147 PL 148
            L
Sbjct: 127 KL 128

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 152 TQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSK 210
           +   +  G++++ + +    L++++ E  GL     G CDP   +++    ++   QK++
Sbjct: 9   SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQ 68

Query: 211 VKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHD-ISGLNVFLGEVHIPLNNKETSS 265
                  P F+E F F     D  +  LV   +    S  +  +G +   + +  T  
Sbjct: 69  TVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 92  PFFGEEFQFDIPRRF--RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFPL 148
           P F E F F +      + L V  ++R   S+   ++G ++     L     +   W+ L
Sbjct: 76  PAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

Query: 149 TP 150
             
Sbjct: 136 LG 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 153 QDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDVQKSKV 211
                 G +++ V     +L + V     L   +G   +P     +    +K+  +K+K+
Sbjct: 3   HHHHGSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKI 62

Query: 212 KKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN 260
            +K+ +P FNE  ++     + +    L +S L  +    N FLG + +PL +
Sbjct: 63  SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 92  PFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           P F E   +        R R L +     +   +    LG +T+   D +       W+ 
Sbjct: 69  PTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENF-FLGGITLPLKDFNLSKETVKWYQ 127

Query: 148 LTPVT 152
           LT  T
Sbjct: 128 LTAAT 132

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 159 GKIQIGVL--STPTSLMVNVNEASGL--TQVNGQCDPTAMVTVH-YTHNKSDVQKSKVKK 213
            +IQI +          + + + S L              V V   + + + + +++   
Sbjct: 30  TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD 89

Query: 214 KSHSPVFNESFMFDRSLGDPIE--LVVSL-HHDISGLNVFLGEVHIPLNNKETSS 265
            S + VFNE F    S     +  L V +   D S L   LG   I L     S 
Sbjct: 90  ASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 92  PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFP 147
             F E F   +       + L V     DR+   +  LG   I  +++ R   +   W+ 
Sbjct: 94  LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEE-CLGGAQISLAEVCRSGERSTRWYN 152

Query: 148 L 148
           L
Sbjct: 153 L 153

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 150 PVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDV 206
                    G+IQ+ +   S    L+V V+    L   +    DP   + +     +S  
Sbjct: 2   SSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGR 61

Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHD--ISGLNVFLGEVHIPLNNK 261
           +K+ V KK+ +PVF++SF F  SL +     L V+  +    +S     LG+V + L ++
Sbjct: 62  RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

Query: 262 ETSSSW 267
           E +  W
Sbjct: 122 ELAKGW 127

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 91  SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRISNKEHWF 146
           +P F + F F +     + R L V   +       D+ +LGKV +  +          W+
Sbjct: 72  NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWY 131

Query: 147 PLTPVTQDSE 156
            LT  +  S 
Sbjct: 132 DLTEDSGPSS 141

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL---TQVNGQCDPTAMVTVHYTHNKSDV 206
           +  S   G +   +         +VN+ EA GL    + +   DP   + +     K   
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDP--YIKMTILPEKKHK 59

Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN-- 260
            K++V +K+  P F+E+F F       I+   L  + L  D    +  +GEV IPL+   
Sbjct: 60  VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119

Query: 261 --KETSSSWW 268
             +       
Sbjct: 120 LSEGKMLMNR 129

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTV-HYTHNKSDVQKSKVKKKSHSPVFNESFMFDR 228
           + V V    GL +  + G  DP   VT+           ++K  KKS +P +NE  +F  
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
                  L      +    + FLG+V +PL  
Sbjct: 70  LPQRHRILFEVFDENRLTRDDFLGQVDVPLYP 101

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 92  PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL------HRISNKEHW 145
           P + EE  F +  +   +    +D +R ++ D  LG+V +    L               
Sbjct: 59  PKWNEEILFRVLPQRHRILFEVFDENRLTRDDF-LGQVDVPLYPLPTENPRMERPYTFKD 117

Query: 146 FPLTPVTQDSEVQGKIQIGVLSTPT--SLMVNVNEASGL 182
           F L P +  S V+G +++ +   P   S   N ++A  L
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEEL 156

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 172 LMVNVNEASGL-TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD--- 227
           L V V  AS +     G+ DP  +V+V +   K   +K+K      +PV+NE   FD   
Sbjct: 9   LRVIVESASNIPKTKFGKPDP--IVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRG 63

Query: 228 --RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN--KETSSSWW 268
                   + ++V    +  G N  +G   + L +   + S S  
Sbjct: 64  IPLDFSSSLGIIV-KDFETIGQNKLIGTATVALKDLTGDQSRSLP 107

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 85  SVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRIS 140
            +NPV    + E  +FD+          L +   D +   + ++++G  T+   DL    
Sbjct: 48  ELNPV----WNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ-NKLIGTATVALKDLTGDQ 102

Query: 141 NKEHWFPLTPV--TQDSEVQGKIQIGVLSTPTS 171
           ++   + L  +   +  +    I + +   P S
Sbjct: 103 SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 58.1 bits (141), Expect = 5e-11
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R 228
           L V V +A+ L     +G+ DP  ++ +      +D  ++    K+ +P +N+ F F  +
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK 69

Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN-KETSSSWW 268
            + D +E+ V    D      FLG+V IPL + ++   + +
Sbjct: 70  DIHDVLEVTV-FDEDGDKPPDFLGKVAIPLLSIRDGQPNCY 109

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 92  PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRIS-NKEHWFPLTP 150
           P + + F F I      L V  +D D     D  LGKV I    L  I   + + + L  
Sbjct: 58  PEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD-FLGKVAI---PLLSIRDGQPNCYVLKN 113

Query: 151 VTQDSEVQGKIQIGV 165
              +   +G I + +
Sbjct: 114 KDLEQAFKGVIYLEM 128

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTV-HYTHNKSDVQKSKVKKKSHSPVFNESFMFD- 227
           + V V    GL +  + G  DP   VT+    +      ++K  KKS +P +NE  +F  
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81

Query: 228 RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
                 +   V    +    + FLG+V +PL  
Sbjct: 82  HPQQHRLLFEV-FDENRLTRDDFLGQVDVPLYP 113

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 92  PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL------HRISNKEHW 145
           P + EE  F +  +   L    +D +R ++ D  LG+V +    L               
Sbjct: 71  PKWNEEILFRVHPQQHRLLFEVFDENRLTRDDF-LGQVDVPLYPLPTENPRLERPYTFKD 129

Query: 146 FPLTPVTQDSEVQGKIQIGVLSTP 169
           F L P +  S V+G +++ +   P
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTYLP 153

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 171 SLMVNVNEASGL-------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHS 217
            L + + EA  L                    DP   + V    + S + ++  K+K++S
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62

Query: 218 PVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLN 259
           P +++ F+ D   G  IEL V  H    G + F+    I   
Sbjct: 63  PAWHDEFVTDVCNGRKIELAV-FHDAPIGYDDFVANCTIQFE 103

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR--ISNKEHWFPL 148
           SP + +EF  D+    R + +  +        D  +   TIQ  +L +    + E W  L
Sbjct: 62  SPAWHDEFVTDVC-NGRKIELAVFHDAPIGY-DDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 149 TPVTQDSEVQGKIQIGV 165
                  E +GK+ + +
Sbjct: 120 -------EPEGKVYVII 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           + + V  A  L         DP A + V           +   K +  P +N+ +     
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVD---GSGQCHSTDTVKNTLDPKWNQHYDLYVG 63

Query: 230 LGDPIELVV-----SLHHDISGLNVFLGEVHIPLNN 260
             D I + V           +G   FLG V +  N 
Sbjct: 64  KTDSITISVWNHKKIHKKQGAG---FLGCVRLLSNA 96

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR--VLGKVTIQRSDLHRISNKEHWFPL 148
            P + + +   + +    + +  ++  +  K      LG V +  + + R+ +   +  L
Sbjct: 51  DPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRL 108

Query: 149 TPV----TQDSEVQGKIQI 163
                  +    V+G+I +
Sbjct: 109 DLCKLNPSDTDAVRGQIVV 127

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 171 SLMVNVNEASGL------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSP 218
            L V + EA GL             + +   DP   V+V        V ++  K+K++ P
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR----VGQTSTKQKTNKP 85

Query: 219 VFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
            +NE F  + + G  +EL V  H    G + F+    +    
Sbjct: 86  TYNEEFCANVTDGGHLELAV-FHETPLGYDHFVANCTLQFQE 126

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK----EHWF 146
            P + EEF  ++     HL +  +        D  +   T+Q  +L R +      E W 
Sbjct: 84  KPTYNEEFCANVTDG-GHLELAVFHETPLGY-DHFVANCTLQFQELLRTTGASDTFEGWV 141

Query: 147 PLTPVTQDSEVQGKIQIGV 165
            L P       +GK+ + +
Sbjct: 142 DLEP-------EGKVFVVI 153

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 56.0 bits (135), Expect = 6e-10
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 164 GVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN 221
           G L+  + L + V  A      +      P   VTV         +K++    ++SP + 
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWK 84

Query: 222 ESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
           +      +    +   V   H     +V LG   + +  
Sbjct: 85  QPLTVIVTPVSKLHFRV-WSHQTLKSDVLLGTAALDIYE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 19/103 (18%)

Query: 168 TPTSLMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNE 222
           +     V V  A+ +T+     +    DP   V +  +      ++++      +PV+NE
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNE 58

Query: 223 SFMF--DRSLGDPIELVV----SLHHDISGLNVFLGEVHIPLN 259
           +F F  D +  + +E+ +     +  +       LG     ++
Sbjct: 59  TFEFILDPNQENVLEITLMDANYVMDE------TLGTATFTVS 95

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 85  SVNPVTSPFFGEEFQFDIPRRF-RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKE 143
            +NPV    + E F+F +       L +   D +     D  LG  T   S +     KE
Sbjct: 51  DINPV----WNETFEFILDPNQENVLEITLMDANYV--MDETLGTATFTVSSMKVGEKKE 104

Query: 144 HWFPLTPVTQ 153
             F    VT+
Sbjct: 105 VPFIFNQVTE 114

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 157 VQGKIQIGVLSTPTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           V+  +  G       + + V  A GL      G  DP   V V         +++K    
Sbjct: 4   VKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKTIYG 58

Query: 215 SHSPVFNESFMFD-RSLGDPIELVV----------SLHHDISGLNVFLGEVHIPLN 259
           + +PV+ E+F F+  +  D I++ V                   + FLG+  I + 
Sbjct: 59  NLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 91  SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT----------DRVLGKVTIQRSDLHRIS 140
           +P + E F F+       + V   D D   K+          D  LG+  I+   L    
Sbjct: 61  NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-- 118

Query: 141 NKEHWFPLTPVTQDSEVQGKIQIGV 165
             + W+ L   T  S V G I++ +
Sbjct: 119 EMDVWYNLDKRTDKSAVSGAIRLHI 143

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R 228
           L V +  A GL         DP   +T        D + +  +    +P +NE+F+F   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
                ++  +    D+   +  +GE  IPL  
Sbjct: 68  EGTTELKAKI-FDKDVGTEDDAVGEATIPLEP 98

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 92  PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151
           P + E F F +      L    +D+D  ++ D  +G+ TI    +              V
Sbjct: 56  PEWNETFIFTVSEGTTELKAKIFDKDVGTE-DDAVGEATIPLEPV--FVEGSIPPTAYNV 112

Query: 152 TQDSEVQGKIQIGVLSTPT 170
            +D E +G+I + +   P+
Sbjct: 113 VKDEEYKGEIWVALSFKPS 131

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF 226
             V V  A+ +T+     +    DP   V +  +      ++++      +PV+NE+F F
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 227 DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
                    L ++L      ++  LG     +++
Sbjct: 78  ILDPNQENVLEITLMDANYVMDETLGTATFTVSS 111

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG 231
           L V V +A        + +    + V       +V+ + +  +   P + + FMF   + 
Sbjct: 7   LCVGVKKAKFDGAQ-EKFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMF--EIN 57

Query: 232 DP-IELVVSLHHDISGLNVFLGEVHIPLN-----NKETSSSW 267
              + L V + +     +  +G V IPL      N+E    W
Sbjct: 58  RLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 99

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 83  SPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRV--LGKVTIQRSDLHRI 139
            P      + F+GE F+F+     R L ++ Y D D+  K D+   +G VT+  + L   
Sbjct: 46  KPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGR 105

Query: 140 SNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHY 199
              E W+P+T  T      G    G   +               ++  +    +++ +  
Sbjct: 106 HFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMEL 165

Query: 200 THN 202
              
Sbjct: 166 YKE 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 37/315 (11%), Positives = 87/315 (27%), Gaps = 81/315 (25%)

Query: 13  HTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL-QPH 71
           H  ++   +   YK ++       +          + +QD+    I  +   DHI+    
Sbjct: 6   HMDFETGEHQYQYKDILSV-----FEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKD 59

Query: 72  YYED---LCTQILNSPSVNPVTSPFFGEEFQFD---IPRRFRH--------LAVYAYDRD 117
                  L   +L+      +   F  E  + +   +    +           +Y   RD
Sbjct: 60  AVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP--------------------VTQDSEV 157
           R    ++V  K  + R   + +  ++    L P                    V    +V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 158 QGK-------IQIGVLSTPTSLMVNVNE-----ASGLTQVNGQCDPTAMVTVHYTHNKSD 205
           Q K       + +   ++P +++  + +         T  +       +           
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 206 VQKSKVKKKS--------HSPVFNESFMF---------DRSLGDPIELVVSLHHDISGLN 248
           + KSK  +          ++  +  +F            + + D +    + H       
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTH------- 288

Query: 249 VFLGEVHIPLNNKET 263
           + L    + L   E 
Sbjct: 289 ISLDHHSMTLTPDEV 303

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG 231
           L V V +A        + +    + V       +V+ + +  +   P + + FMF+ +  
Sbjct: 16  LCVGVKKAK-FDGAQEKFNTYVTLKV------QNVESTTIAVRGSQPSWEQDFMFEINRL 68

Query: 232 DPIELVVSLHHDISGLNVFLGEVHIPLN-----NKETSSSW 267
           D + L V + +     +  +G V IPL      N+E    W
Sbjct: 69  D-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.88
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.88
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.88
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.87
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.87
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.87
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.87
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.86
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.86
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.86
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.86
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.86
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.86
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.85
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.85
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.85
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.85
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.85
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.85
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.85
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.85
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.85
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.85
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.84
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.84
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.84
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.84
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.83
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.83
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.83
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.83
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.83
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.83
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.83
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.83
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.83
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.83
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.82
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.82
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.82
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.82
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.81
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.81
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.81
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.81
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.8
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.8
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.79
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.79
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.77
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.77
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.76
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.75
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.74
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.74
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.73
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.73
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.72
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.71
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.7
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.7
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.69
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.69
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.69
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.67
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.66
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.66
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.6
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.6
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.59
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.58
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.57
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.55
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.55
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.53
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.5
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.43
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.42
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.4
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.35
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.33
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.32
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.3
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.21
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.21
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.16
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.18
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.93
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.12
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.55
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.38
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.1
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.88
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.48
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.03
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.62
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	92.42
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.76
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	87.86
2qzq_A	152	Axin interactor, dorsalization associated protein;	82.07

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=2.6e-42  Score=293.20  Aligned_cols=224  Identities=22%  Similarity=0.312  Sum_probs=197.4

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w   94 (268)
                      .+|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ..++|+++++++||+|
T Consensus         4 ~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~w   69 (284)
T 2r83_A            4 KLGKLQYSLDYDFQ-------------NNQLLVGII-QAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF   69 (284)
T ss_dssp             CCCEEEEEEEEETT-------------TTEEEEEEE-EEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEE
T ss_pred             ceeEEEEEEEEECC-------------CCEEEEEEE-EeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCee
Confidence            57899999999876             789999999 999999  7788999 998        3678999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC-cccceEEEEEEEEc--
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD-SEVQGKIQIGVLST--  168 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~v~l~~~--  168 (268)
                      ||+|.|.++..   ...|.|+|||.| .+++|++||++.++|.++..+...+.|++|.+.... ....|+|.+++.|.  
T Consensus        70 ne~f~f~v~~~~~~~~~l~~~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~  148 (284)
T 2r83_A           70 NEQFTFKVPYSELAGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPT  148 (284)
T ss_dssp             EEEEEECCCGGGCTTCEEEEEEEECC-SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETT
T ss_pred             CceEEEEechHHhCcCEEEEEEEECC-CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCc
Confidence            99999998764   579999999999 788999999999999999887788999999876432 34579999999997  


Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDI  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~  244 (268)
                      .+.|.|.|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.++.+++..  |.|+|||++
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  228 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  228 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence            789999999999997  5677899999999985544456789999999999999999999998877754  999999999


Q ss_pred             CC-CCeeeEEEEEeCCccCCC
Q psy3954         245 SG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       245 ~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      .+ ++++||++.|+++++..+
T Consensus       229 ~~~~~~~iG~~~i~l~~~~~~  249 (284)
T 2r83_A          229 KIGKNDAIGKVFVGYNSTGAE  249 (284)
T ss_dssp             SSSCCCEEEEEEEETTCCHHH
T ss_pred             CCCCCcEEEEEEECCCCCCcH
Confidence            98 999999999999886543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.8e-41  Score=289.67  Aligned_cols=223  Identities=19%  Similarity=0.295  Sum_probs=192.9

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w   94 (268)
                      .+|.++.++.|...             .+.|.|+|+ +|++|+  +..|.+| ||+        +.+||+++++++||+|
T Consensus         5 ~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~w   70 (296)
T 1dqv_A            5 PCGRISFALRYLYG-------------SDQLVVRIL-QALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIF   70 (296)
T ss_dssp             SSCEEEEEEECCSS-------------SCEEEEEEE-EEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEE
T ss_pred             eeeEEEEEEEEeCC-------------CCEEEEEEE-EeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcE
Confidence            46899999999876             789999999 999999  7788999 998        4679999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEe-cccccc-ccCccceecCcccCCCcccceEEEEEEEEc-
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQ-RSDLHR-ISNKEHWFPLTPVTQDSEVQGKIQIGVLST-  168 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~-l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~-  168 (268)
                      ||+|.|.++..   ...|.|+|||+| .+++|++||++.++ +.++.. ......|++|.+........|+|.+++.|. 
T Consensus        71 ne~f~f~v~~~~l~~~~L~~~V~d~d-~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           71 NETFQFSVPLAELAQRKLHFSVYDFD-RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             EEEEEEECCGGGGSSCCCEEEEEECC-SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred             eeEEEEEecHHHhcCCEEEEEEEEcC-CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence            99999998754   468999999999 78899999999996 444432 345678999987665555689999999997 


Q ss_pred             -CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEec
Q psy3954         169 -PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHD  243 (268)
Q Consensus       169 -~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~  243 (268)
                       .+.|.|.|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||.|.|.++.+.+..  |.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence             799999999999997  5678899999999975444456889999999999999999999998776654  99999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +.+ ++++||++.|+++++..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCceEEEEEECCccCCc
Confidence            998 99999999999998754

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.88  E-value=7.6e-22  Score=151.94  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=98.3

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEe
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYD  115 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d  115 (268)
                      ....+.|.|+|+ +|++|+  +..+.+| ||+           ..+||+++++++||+|||+|.|.+......|.|+|||
T Consensus        16 ~~~~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVI-AGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEE-EEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCccEEEEEEE-EeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            455789999999 999999  6778999 998           2679999999999999999999998888899999999


Q ss_pred             CCCCCCCCceeEEEEEeccccccccCc------cceecCcccCCCcccceEEEEEEEEc
Q psy3954         116 RDRTSKTDRVLGKVTIQRSDLHRISNK------EHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       116 ~d~~~~~d~~iG~~~i~l~~l~~~~~~------~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++ .+++|++||++.+++.++......      ..|++|.+........|+|++++.|.
T Consensus        95 ~d-~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           95 EN-RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             CC-SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CC-CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            99 788999999999999999865543      58999988765556789999999884

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=2.7e-22  Score=150.86  Aligned_cols=115  Identities=23%  Similarity=0.353  Sum_probs=101.6

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSK  121 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~  121 (268)
                      .+..+.|.|+|+ +|++|+  +..|.+| ||+     +.+||+++++++||+|||+|.|.+......|.|+|||++ ..+
T Consensus         9 ~~~~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d-~~~   86 (133)
T 2ep6_A            9 VKDVGILQVKVL-KAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDED-GDK   86 (133)
T ss_dssp             CCCSEEEEEEEE-EEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEE-TTE
T ss_pred             cCCceEEEEEEE-eeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECC-CCC
Confidence            345899999999 999999  7778999 999     788999999999999999999999887889999999999 788


Q ss_pred             CCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         122 TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +|++||++.+++.++..+  ...|++|.+........|+|++++.|.
T Consensus        87 ~~~~lG~~~i~l~~l~~~--~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEECCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCC--CceEEEeecCCCCCccceEEEEEEEEE
Confidence            899999999999999643  468999987665556789999998763

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.88  E-value=5.9e-22  Score=151.69  Aligned_cols=112  Identities=21%  Similarity=0.354  Sum_probs=100.6

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC----
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS----  120 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~----  120 (268)
                      .+.|.|+|+ +|++|+  +..+.+| ||+     +.++|+++++|+||.|||+|.|.+......|.|+|||.| ..    
T Consensus        16 ~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d-~~~~~~   93 (148)
T 3kwu_A           16 SAKISITVV-CAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED-DDIKSR   93 (148)
T ss_dssp             CEEEEEEEE-EEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECC-CSHHHH
T ss_pred             ccEEEEEEE-eeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECC-CCcccc
Confidence            689999999 999999  7788999 999     789999999999999999999999887789999999999 64    


Q ss_pred             -------CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         121 -------KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       121 -------~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                             ++|++||++.+++.++.  ...+.|++|.+........|+|++++.|.
T Consensus        94 ~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           94 VKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                   78999999999999983  45689999997766666789999999874

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=154.64  Aligned_cols=109  Identities=25%  Similarity=0.376  Sum_probs=94.4

Q ss_pred             cCCCeEEEEEEEcccCccc--cC----------CCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEE
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QP----------HYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLA  110 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~----------~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~  110 (268)
                      ....|.|+|+|+ +|++|+  |.          .+.+| ||+      ...||+++++|+||+|||+|.|.+... ..|.
T Consensus        25 ~~~~g~L~V~Vi-eA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~  102 (157)
T 2fk9_A           25 MKFNGYLRVRIG-EAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLE  102 (157)
T ss_dssp             CCEEEEEEEEEE-EEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred             ccCccEEEEEEE-EEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEE
Confidence            345789999999 999998  42          26789 999      457999999999999999999998764 7999


Q ss_pred             EEEEeCCCCCCCCceeEEEEEeccccccc----cCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         111 VYAYDRDRTSKTDRVLGKVTIQRSDLHRI----SNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       111 ~~v~d~d~~~~~d~~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      |+|||+| .+++|++||++.|+++++..+    ...+.|++|.+       +|+|++++.+.
T Consensus       103 ~~V~D~d-~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~  156 (157)
T 2fk9_A          103 LAVFHET-PLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT  156 (157)
T ss_dssp             EEEEECC-SSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred             EEEEECC-CCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence            9999999 789999999999999998854    55789999965       69999998874

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.87  E-value=1.9e-22  Score=156.32  Aligned_cols=109  Identities=25%  Similarity=0.329  Sum_probs=95.1

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      .+..|+|.+++.|.  .+.|.|+|++|+||+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.++.
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   87 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF   87 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence            44579999999996  899999999999997  55678999999999854444568999999999999999999999987


Q ss_pred             CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .++..  |.|+|||++.. ++++||++.|++.++..
T Consensus        88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~  123 (159)
T 1tjx_A           88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA  123 (159)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred             HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCc
Confidence            66653  99999999998 89999999999997643

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.87  E-value=1.9e-22  Score=152.53  Aligned_cols=111  Identities=23%  Similarity=0.455  Sum_probs=96.2

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      +|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++++...+....+++|++++++.||+|||+|.|.++..++
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            69999999996  899999999999997  55678999999999855445568999999999999999999999987776


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..  |.|+|||++.. ++++||++.|+++++..+..+|
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W  119 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHW  119 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHH
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHH
Confidence            43  99999999998 8999999999999865544443

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.87  E-value=5.2e-22  Score=152.89  Aligned_cols=110  Identities=24%  Similarity=0.322  Sum_probs=91.3

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      ....|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.+..
T Consensus        13 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   92 (153)
T 1w15_A           13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC   92 (153)
T ss_dssp             ---CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred             CccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence            34579999999996  899999999999997  55688999999999854444457899999999999999999999988


Q ss_pred             CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      .++..  |.|+|||++.+ ++++||++.|++++...+
T Consensus        93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~  129 (153)
T 1w15_A           93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG  129 (153)
T ss_dssp             SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHH
T ss_pred             HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchH
Confidence            77643  99999999988 899999999999884433

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=2.8e-22  Score=154.54  Aligned_cols=107  Identities=20%  Similarity=0.161  Sum_probs=92.8

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEccC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      ...|+|++++.|.  .+.|.|.|++|+||+  +.+|.+||||++++..... ...+++|+++++++||+|||+|.|.++.
T Consensus        27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred             CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence            3479999999996  899999999999997  5678899999999984222 2347999999999999999999999876


Q ss_pred             CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccC
Q psy3954         231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~  262 (268)
                      .++..  |.|+|||++.+ ++++||++.++|+++.
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc
Confidence            55533  99999999998 9999999999999985

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.86  E-value=6.1e-22  Score=154.60  Aligned_cols=109  Identities=27%  Similarity=0.416  Sum_probs=94.1

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      ....|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.+..
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            45689999999996  899999999999997  55788999999999844444568999999999999999999999987


Q ss_pred             CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .++..  |.|+|||++.. ++++||++.|++.++..
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~  135 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE  135 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCc
Confidence            66643  99999999998 89999999999998654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.86  E-value=4.6e-21  Score=151.00  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=96.7

Q ss_pred             CCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeC
Q psy3954          51 QDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR  116 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~  116 (268)
                      ...+.|.|+|+ +|++|+  +..+.+| ||+           ..++|+++++++||+|||+|.|.+......|.|+|||.
T Consensus         5 ~~~g~L~V~v~-~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVI-AGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEE-EEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCcEEEEEEEE-EeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            44789999999 999998  7788999 998           25799999999999999999999988788999999999


Q ss_pred             CCCCCCCceeEEEEEeccccccccCc-c-----ceecCcccCCCcccceEEEEEEEEc
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRISNK-E-----HWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      + .+++|++||++.++|.++...... +     .|++|.+........|+|++++.|.
T Consensus        84 d-~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~  140 (176)
T 3m7f_B           84 N-RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  140 (176)
T ss_dssp             C-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             C-CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEE
Confidence            9 788999999999999999865432 2     7999998776666789999999986

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=4.1e-21  Score=145.30  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ....|+|++++.|.  .+.|.|.|++|++ .+..|.+||||++++.++. ...+++|+++++++||+|||+|.|.++..+
T Consensus         9 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~-~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~   86 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDCQKAELFVTRLEAVT-SNHDGGCDCYVQGSVANRT-GSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETT-EEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCC-CcccEecccCcCCCCCcCCceEEEEecHHH
Confidence            34579999999997  8899999999995 4677889999999997422 245789999999999999999999998777


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +..  |.|+|||++.+ ++++||++.++|.++..
T Consensus        87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~  120 (138)
T 1wfm_A           87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV  120 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccC
Confidence            653  99999999998 99999999999999964

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=1.3e-21  Score=147.60  Aligned_cols=114  Identities=21%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccC-CCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVN-PVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS  120 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~-~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~  120 (268)
                      ....+.|.|+|+ +|++|+  +..+.+| ||+     +.+||++++ +++||+|||+|.|.+......|.|+|||++ .+
T Consensus         6 ~~~~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~-~~   83 (136)
T 1wfj_A            6 SGPHGTLEVVLV-SAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD-VG   83 (136)
T ss_dssp             CCCEEEEEEEEE-EEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSS-SC
T ss_pred             CCCcEEEEEEEE-eccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECC-CC
Confidence            345789999999 999999  6678899 999     678999998 899999999999999887889999999999 78


Q ss_pred             CCCceeEEEEEeccccc-cccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         121 KTDRVLGKVTIQRSDLH-RISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++|++||++.+++.++. .+.....|++|.   ......|+|++++.|.
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~---~~~~~~G~i~l~l~~~  129 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVV---KDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEE---ETTEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEee---cCCccCEEEEEEEEEE
Confidence            89999999999999984 444467899997   2345689999999885

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=4.1e-21  Score=145.28  Aligned_cols=108  Identities=28%  Similarity=0.337  Sum_probs=93.3

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-c
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R  228 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v  228 (268)
                      ....|+|.+++.|.  .+.|.|.|++|++|+  +.. |.+||||++++..+  ...+++|+++++++||+|||+|.|. +
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~~v   82 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE--KKHKVKTRVLRKTLDPAFDETFTFYGI   82 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT--TCSEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC--CCceEecCcCcCCCCCcEeeEEEEcCc
Confidence            34579999999995  899999999999997  443 77999999999832  2368999999999999999999996 7


Q ss_pred             cCCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         229 SLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       229 ~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +..++..  |.|+|||++.+ ++++||++.++|.++..+
T Consensus        83 ~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A           83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             CSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred             CHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCC
Confidence            7666643  99999999988 899999999999999763

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=2.9e-21  Score=144.35  Aligned_cols=107  Identities=20%  Similarity=0.299  Sum_probs=89.0

Q ss_pred             cceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-cCC
Q psy3954         157 VQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLG  231 (268)
Q Consensus       157 ~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~~~  231 (268)
                      ..|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.+ +..
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            469999999998  789999999999997  556779999999998554456789999999999999999999984 433


Q ss_pred             CCc--eEEEEEEecCCC-C--CeeeEEEEEeCCccCC
Q psy3954         232 DPI--ELVVSLHHDISG-L--NVFLGEVHIPLNNKET  263 (268)
Q Consensus       232 ~~~--~l~i~V~d~~~~-~--~~~lG~~~l~l~~~~~  263 (268)
                      ++.  .|.|+|||++.. +  +++||++.+++.++..
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCC
Confidence            333  399999999988 5  9999999999999865

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=144.00  Aligned_cols=113  Identities=18%  Similarity=0.262  Sum_probs=97.8

Q ss_pred             CCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCCCC
Q psy3954          52 DLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRT  119 (268)
Q Consensus        52 ~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~  119 (268)
                      ..+.|.|+|+ +|++|+  +. +.+| ||+     +++||+++++++||+|||+|.|.+...    ...|.|+|||+| .
T Consensus         5 ~~g~L~v~v~-~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d-~   81 (140)
T 2dmh_A            5 SSGMLRVIVE-SASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE-T   81 (140)
T ss_dssp             BCCEEEEEEE-EEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT-C
T ss_pred             CCcEEEEEEE-EeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC-C
Confidence            3689999999 999999  56 8999 999     789999999999999999999998753    689999999999 7


Q ss_pred             CCCCceeEEEEEeccccccccCccceec---CcccCCCcccceEEEEEEEEc
Q psy3954         120 SKTDRVLGKVTIQRSDLHRISNKEHWFP---LTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       120 ~~~d~~iG~~~i~l~~l~~~~~~~~w~~---L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +++|++||++.+++.++..+...+.|++   |.... .....|+|++++.|.
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~-~~~~~G~l~l~~~~~  132 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEK-GQDTGATIDLVIGYD  132 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTT-CCEEEEEEEEEEEEC
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCC-CCCCCCEEEEEEEEE
Confidence            8899999999999999987777888988   44332 234579999999986

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.85  E-value=1.4e-21  Score=148.49  Aligned_cols=111  Identities=23%  Similarity=0.368  Sum_probs=94.8

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-cc
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RS  229 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~  229 (268)
                      ....|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|. ++
T Consensus        12 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~   91 (142)
T 2chd_A           12 ATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT   91 (142)
T ss_dssp             --CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred             CCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence            44579999999995  999999999999997  45678999999999854445678999999999999999999998 65


Q ss_pred             CCCCc--eEEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954         230 LGDPI--ELVVSLHHDISG-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       230 ~~~~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~  265 (268)
                      ..++.  .|.|+|||++.. ++++||++.++++++..+.
T Consensus        92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~  130 (142)
T 2chd_A           92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ  130 (142)
T ss_dssp             HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC
T ss_pred             HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC
Confidence            54443  399999999998 8999999999999997643

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=147.73  Aligned_cols=109  Identities=21%  Similarity=0.334  Sum_probs=95.9

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS  229 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~  229 (268)
                      .+..|+|.+++.|.  .+.|.|.|++|++|+  + ..|.+||||++++..++....+++|+++++++||+|||+|.|.++
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   85 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP   85 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence            45689999999998  789999999999997  3 467799999999985554466899999999999999999999998


Q ss_pred             CCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         230 LGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       230 ~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ..++..  |.|+|||++.. ++++||++.++|+++..
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~  122 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKL  122 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHH
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccc
Confidence            877654  99999999988 89999999999988754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=3.4e-21  Score=147.68  Aligned_cols=110  Identities=26%  Similarity=0.311  Sum_probs=95.7

Q ss_pred             cccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      .+..|+|.+++.|..+.|.|+|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|.+...+
T Consensus        16 ~~~~G~l~~~l~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   95 (149)
T 1a25_A           16 MERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   95 (149)
T ss_dssp             -CTTCEEEEEEEESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             CCcceEEEEEEEecCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecccc
Confidence            34479999999999999999999999997  5567899999999985444456899999999999999999999987655


Q ss_pred             Cce-EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         233 PIE-LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       233 ~~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +.. |.|+|||++.. ++++||++.|++.++..+
T Consensus        96 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A           96 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA  129 (149)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC
T ss_pred             CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC
Confidence            544 99999999998 899999999999988653

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=150.82  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPV   89 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t   89 (268)
                      ...+|.++.++.|...             .+.|.|+|+ +|++|+  +.+|.+| ||+           .++||+++++|
T Consensus        26 ~~~~G~l~~sl~y~~~-------------~~~L~V~Vi-~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~t   91 (155)
T 2z0u_A           26 AVGATRIQIALKYDEK-------------NKQFAILII-QLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS   91 (155)
T ss_dssp             --CCEEEEEEEEEETT-------------TTEEEEEEE-EEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECC
T ss_pred             cCCcEEEEEEEEEcCC-------------CCEEEEEEE-EccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCC
Confidence            3467999999999876             789999999 999999  7789999 999           16899999999


Q ss_pred             CCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccc-cccCccceecCcc
Q psy3954          90 TSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH-RISNKEHWFPLTP  150 (268)
Q Consensus        90 ~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~-~~~~~~~w~~L~~  150 (268)
                      +||+|||+|.|.++..   ...|.|+|||+| .++++++||++.++|+++. .......|++|.+
T Consensus        92 lnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d-~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A           92 DTLVFNEVFWVSMSYPALHQKTLRVDVCTTD-RSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             SSEEEEEEEEEECCHHHHHHCEEEEEEEEEC-TTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CCCccccEEEEEcCHHHhCcCEEEEEEEECC-CCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            9999999999998764   578999999999 7889999999999999996 3567789998864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=1.2e-20  Score=142.77  Aligned_cols=115  Identities=11%  Similarity=0.011  Sum_probs=100.5

Q ss_pred             cccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE---------EEeeecccCCCCCC
Q psy3954          23 ATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT---------QILNSPSVNPVTSP   92 (268)
Q Consensus        23 ~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~---------~~~~T~~~~~t~nP   92 (268)
                      +.-.+|.++.+++|...             .+.|.|+|+ +|++ .+..|.+| ||+         ..+||+++++|+||
T Consensus         8 s~~~~G~l~~sl~y~~~-------------~~~L~V~v~-~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP   72 (138)
T 1wfm_A            8 SWNQAPKLHYCLDYDCQ-------------KAELFVTRL-EAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT   72 (138)
T ss_dssp             CCSSCCEEEEEEEEETT-------------TTEEEEEEE-EEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSE
T ss_pred             CCCcceEEEEEEEEeCC-------------CCEEEEEEE-EEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCC
Confidence            34467899999999876             789999999 9994 26788999 998         26899999999999


Q ss_pred             ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      +|||+|.|.++..   ...|.|+|||+| .+++|++||++.++|.++......+.|++|.+...
T Consensus        73 ~wnE~f~f~v~~~~l~~~~L~~~V~d~d-~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  135 (138)
T 1wfm_A           73 TWEEGLVLPLAEEELPTATLTLTLRTCD-RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             ECSSCEEEECCTTSSTTCEEEEEEEECC-SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             cCCceEEEEecHHHcCCCEEEEEEEECC-CCCCCcEEEEEEEEcccccCcccccceeeCcCCCc
Confidence            9999999998765   578999999999 78999999999999999987777889999987653

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.2e-21  Score=147.48  Aligned_cols=112  Identities=21%  Similarity=0.389  Sum_probs=94.6

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCCC---CC------CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceE
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLTQ---VN------GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNES  223 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~~---~~------g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~  223 (268)
                      ....|+|.+++.|.  .+.|.|+|++|++|+.   .+      |.+||||++++..++  ..+++|+++++++||+|||+
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~   86 (147)
T 2enp_A            9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ--KNSKQTGVKRKTQKPVFEER   86 (147)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC--SSCEECCCCCSCSSCCCCBC
T ss_pred             CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC--CcceEeecccCCCCCeEeee
Confidence            45689999999998  8999999999999974   23      469999999998432  34789999999999999999


Q ss_pred             EEEEccCCCCc--eEEEEEEecCCC-CCeeeEEEEEeCCccCCC--CCCC
Q psy3954         224 FMFDRSLGDPI--ELVVSLHHDISG-LNVFLGEVHIPLNNKETS--SSWW  268 (268)
Q Consensus       224 f~f~v~~~~~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~--~~~w  268 (268)
                      |.|.+...++.  .|.|+|||++.+ ++++||++.|+|.++..+  ..||
T Consensus        87 f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w  136 (147)
T 2enp_A           87 YTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWW  136 (147)
T ss_dssp             CEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEE
T ss_pred             EEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEE
Confidence            99998765544  399999999988 899999999999998663  4465

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.85  E-value=3.9e-21  Score=146.27  Aligned_cols=111  Identities=20%  Similarity=0.279  Sum_probs=99.9

Q ss_pred             cceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCc
Q psy3954          25 YKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPF   93 (268)
Q Consensus        25 ~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~   93 (268)
                      -.+|.++.++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ..++|+++++++||+
T Consensus        18 ~~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~   83 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQ-------------NNQLLVGII-QAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV   83 (143)
T ss_dssp             CCCCEEEEEEEEETT-------------TTEEEEEEE-EEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCE
T ss_pred             cCeEEEEEEEEEeCC-------------CCEEEEEEE-EecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCc
Confidence            457889999888876             789999999 999999  6788999 998        478999999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      |||+|.|.++..   ...|.|+|||++ .+++|++||++.++|.++..+...+.|++|++
T Consensus        84 wne~f~f~v~~~~l~~~~L~i~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           84 FNEQFTFKVPYSELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEEECCCHHHHTTCEEEEEEEECC-SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CcCeEEEeecHhhcCCCEEEEEEEeCC-CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999998754   589999999999 78899999999999999998888899999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=144.25  Aligned_cols=113  Identities=21%  Similarity=0.284  Sum_probs=99.6

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w   94 (268)
                      ..|.++.++.|..+             .+.|.|+|+ +|++|+  +..+.+| ||+        ..+||+++++++||+|
T Consensus        11 ~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w   76 (141)
T 2d8k_A           11 NLGRIQFSVGYNFQ-------------ESTLTVKIM-KAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW   76 (141)
T ss_dssp             CCCEEEEEEEECSS-------------SCCEEEEEE-EEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCC
T ss_pred             eeeEEEEEEEEeCC-------------CCEEEEEEE-EeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCcc
Confidence            46889999888876             789999999 999999  7788999 998        3679999999999999


Q ss_pred             CcEEEEEe-cCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          95 GEEFQFDI-PRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        95 ne~f~f~v-~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      ||+|.|.+ +.+   ...|.|+|||++ .+++|++||++.+++.++..+...+.|++|.+...
T Consensus        77 ne~f~f~~~~~~~~~~~~l~i~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           77 NETFLFEGFPYEKVVQRILYLQVLDYD-RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             CEEEEECSCCHHHHTTSEEEEEEEECC-SSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             ccEEEECccCHHHcccCEEEEEEEECC-CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence            99999985 322   588999999999 78899999999999999987777889999987653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=6.5e-21  Score=144.86  Aligned_cols=108  Identities=28%  Similarity=0.388  Sum_probs=92.8

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL  230 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~  230 (268)
                      ....|+|++++.|.  .+.|.|.|++|++|+  +..| +||||++++..++....+++|+++++++||+|||+|.|.++.
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   85 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL   85 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence            34579999999998  899999999999997  5567 999999999854444568999999999999999999999876


Q ss_pred             CCCc--eEEEEEEecCCC-C--CeeeEEEEEeCCccCC
Q psy3954         231 GDPI--ELVVSLHHDISG-L--NVFLGEVHIPLNNKET  263 (268)
Q Consensus       231 ~~~~--~l~i~V~d~~~~-~--~~~lG~~~l~l~~~~~  263 (268)
                      .++.  .|.|+|||++.. +  +++||++.|+++++..
T Consensus        86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~  123 (142)
T 2dmg_A           86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL  123 (142)
T ss_dssp             HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred             HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence            5554  399999999987 3  4699999999999865

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.85  E-value=1.1e-20  Score=142.29  Aligned_cols=107  Identities=24%  Similarity=0.354  Sum_probs=92.2

Q ss_pred             ceEEEEEEEEcCCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCCCc-
Q psy3954         158 QGKIQIGVLSTPTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGDPI-  234 (268)
Q Consensus       158 ~G~i~v~l~~~~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~~~-  234 (268)
                      .|.+.++..+..+.|.|.|++|++|+ +..|.+||||++++..++....+++|+++++++||+|||+|.|. ++..++. 
T Consensus         8 ~~~~~~~~~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~   87 (134)
T 2b3r_A            8 SGAVKLSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQ   87 (134)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTT
T ss_pred             cEEEEEEEeecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCc
Confidence            46777777888999999999999998 55678999999999855445678999999999999999999999 7755433 


Q ss_pred             -eEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         235 -ELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       235 -~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                       .|.|+|||++.. ++++||++.++++++..+
T Consensus        88 ~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~  119 (134)
T 2b3r_A           88 RELQLSVLSAESLRENFFLGGITLPLKDFNLS  119 (134)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGSCTT
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEhhhccCC
Confidence             399999999988 899999999999999764

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.84  E-value=6e-21  Score=146.78  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=100.1

Q ss_pred             ccccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCC
Q psy3954          22 HATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVT   90 (268)
Q Consensus        22 ~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~   90 (268)
                      .....+|.++.++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+        ..+||+++++++
T Consensus        23 ~~~~~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~   88 (152)
T 1rsy_A           23 KEEEKLGKLQYSLDYDFQ-------------NNQLLVGII-QAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL   88 (152)
T ss_dssp             ---CCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCS
T ss_pred             CCCCCceEEEEEEEEeCC-------------CCEEEEEEE-EeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCC
Confidence            344567899999988876             789999999 999999  7788999 998        367999999999


Q ss_pred             CCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          91 SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        91 nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      ||+|||+|.|.++..   ...|.|+|||++ .+++|++||++.+++.++..+...+.|++|.+.
T Consensus        89 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           89 NPVFNEQFTFKVPYSELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEECC-SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCcCcccEEEeecHHHcCCCEEEEEEEECC-CCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            999999999998753   589999999999 788999999999999999877788999999764

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=5.5e-21  Score=144.22  Aligned_cols=106  Identities=23%  Similarity=0.329  Sum_probs=91.5

Q ss_pred             CeEEEEEEEcccCccc--cCCC-----------CCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEE
Q psy3954          53 LGTLRIRIQYTADHIL--QPHY-----------YED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVY  112 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~-----------~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~  112 (268)
                      .+.|.|+|+ +|++|+  +..+           .+| ||+      ...+|+++++|+||+|||+|.|.+... ..|.|+
T Consensus         5 ~g~L~v~v~-~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            5 NGLLKIKIC-EAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEE-EEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             ceEEEEEEE-eCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            579999999 999998  4333           389 999      447999999999999999999998776 899999


Q ss_pred             EEeCCCCCCCCceeEEEEEecccccccc--CccceecCcccCCCcccceEEEEEEEEc
Q psy3954         113 AYDRDRTSKTDRVLGKVTIQRSDLHRIS--NKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       113 v~d~d~~~~~d~~iG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      |||+| .+++|++||++.+++.++....  ..+.|++|.+       .|+|++++.|.
T Consensus        83 V~d~d-~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~i~l~l~~~  132 (136)
T 1gmi_A           83 VFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLS  132 (136)
T ss_dssp             EEECC-SSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEE
T ss_pred             EEeCC-CCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-------CeEEEEEEEEE
Confidence            99999 7889999999999999988543  3478998865       69999999875

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.84  E-value=3.2e-21  Score=147.63  Aligned_cols=114  Identities=15%  Similarity=0.237  Sum_probs=99.1

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c-CCCCCC-ceE----------EEeeecccCCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q-PHYYED-LCT----------QILNSPSVNPVTS   91 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~----------~~~~T~~~~~t~n   91 (268)
                      ..|.+..++.|...             .+.|.|+|+ +|++|+  + ..+.+| ||+          .+++|+++++|+|
T Consensus         8 ~~G~l~~sl~y~~~-------------~~~L~V~v~-~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~n   73 (148)
T 3fdw_A            8 VTGRIAFSLKYEQQ-------------TQSLVVHVK-ECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVN   73 (148)
T ss_dssp             CCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSS
T ss_pred             cceEEEEEEEEeCC-------------CCEEEEEEE-EecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCC
Confidence            34788888888876             789999999 999999  5 578899 998          2789999999999


Q ss_pred             CccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC
Q psy3954          92 PFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD  154 (268)
Q Consensus        92 P~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~  154 (268)
                      |+|||+|.|.++..   ...|.|+|||+| .+++|++||++.++|.++..+...+.|++|.+....
T Consensus        74 P~wne~f~f~v~~~~~~~~~L~~~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           74 PLYDETLRYEIPESLLAQRTLQFSVWHHG-RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             CEEEEEEEEECCSTTGGGCEEEEEEEEEC-GGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             CcEeeEEEEEeChhHhCceEEEEEEEECC-CCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            99999999998875   457999999999 788999999999999999877788899999887644

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.84  E-value=7.3e-21  Score=146.47  Aligned_cols=109  Identities=23%  Similarity=0.362  Sum_probs=92.9

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      ....|++.+++.|.  .+.|.|.|++|++|+.. .|.+||||++.+..+.....+++|+++++++||+|||+|.|.++..
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   89 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE   89 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence            44578999999988  99999999999999732 5789999999998554456789999999999999999999998766


Q ss_pred             CCce-EEEEEEecCCC-C-CeeeEEEEEeCCccCC
Q psy3954         232 DPIE-LVVSLHHDISG-L-NVFLGEVHIPLNNKET  263 (268)
Q Consensus       232 ~~~~-l~i~V~d~~~~-~-~~~lG~~~l~l~~~~~  263 (268)
                      ++.. |.|+|||++.. + +++||++.++++++..
T Consensus        90 ~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A           90 DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             GTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC
T ss_pred             HhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcC
Confidence            6644 99999999987 5 9999999999998864

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=141.49  Aligned_cols=108  Identities=29%  Similarity=0.379  Sum_probs=91.9

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-c
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-S  229 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~  229 (268)
                      .+..|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..+  ...+++|+++++++||+|||+|.|.+ +
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~~~~   86 (141)
T 2d8k_A            9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD--KKHKLETKVKRKNLNPHWNETFLFEGFP   86 (141)
T ss_dssp             CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESC--CSSEEECCCCTTCSSCCCCEEEEECSCC
T ss_pred             CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECC--CCccEeCceEcCCCCCccccEEEECccC
Confidence            44589999999996  899999999999997  55778999999999732  23578999999999999999999985 3


Q ss_pred             CCCC--ceEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         230 LGDP--IELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       230 ~~~~--~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ..++  ..|.|+|||++.+ ++++||++.+++.++..+
T Consensus        87 ~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~  124 (141)
T 2d8k_A           87 YEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLT  124 (141)
T ss_dssp             HHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTT
T ss_pred             HHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCC
Confidence            2222  3399999999998 899999999999999764

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.84  E-value=9.8e-21  Score=145.57  Aligned_cols=107  Identities=27%  Similarity=0.387  Sum_probs=92.8

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      ...|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..+  ...+++|+++++++||+|||+|.|.+...
T Consensus        26 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~  103 (152)
T 1rsy_A           26 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKKKFETKVHRKTLNPVFNEQFTFKVPYS  103 (152)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT--CCSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             CCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcC--CCceEeccccCCCCCCcCcccEEEeecHH
Confidence            4579999999995  899999999999997  55678999999999732  23578999999999999999999988765


Q ss_pred             CC--ceEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DP--IELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~--~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++  ..|.|+|||++.+ ++++||++.|++.++..+
T Consensus       104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~  139 (152)
T 1rsy_A          104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG  139 (152)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCS
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCC
Confidence            44  3399999999998 899999999999999664

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=2.2e-21  Score=147.46  Aligned_cols=108  Identities=25%  Similarity=0.346  Sum_probs=91.8

Q ss_pred             ccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc---------ceeeeceeccCCCCCccceEE
Q psy3954         156 EVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK---------SDVQKSKVKKKSHSPVFNESF  224 (268)
Q Consensus       156 ~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~---------~~~~kT~v~~~t~nP~~ne~f  224 (268)
                      ...|+|.+++.|..+.|.|.|++|++|+  +..|.+||||++++......         ..+++|+++++++||+|||.|
T Consensus         4 ~~~G~i~~~l~y~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T 1rh8_A            4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             CcceEEEEEEEEcCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEE
Confidence            3589999999999999999999999997  55788999999999743221         246899999999999999999


Q ss_pred             EEE-ccCCCCc--eEEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         225 MFD-RSLGDPI--ELVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       225 ~f~-v~~~~~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .|. ++.+++.  .|.|+|||++.. ++++||++.|+++++..
T Consensus        84 ~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~  126 (142)
T 1rh8_A           84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH  126 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG
T ss_pred             EECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc
Confidence            997 6544332  399999999998 89999999999998864

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.83  E-value=1.9e-20  Score=142.50  Aligned_cols=107  Identities=26%  Similarity=0.378  Sum_probs=93.4

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      +..|+|.+++.|.  .+.|.|+|++|++|+  +..+.+||||++++..++  ..+++|++++++.||+|||+|.|.+...
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~   95 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC--SCCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC--CccEECccCcCCCCCcCcCeEEEeecHh
Confidence            3479999999996  899999999999997  457789999999997332  3578999999999999999999998765


Q ss_pred             CC--ceEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DP--IELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~--~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++  ..|.|+|||++.. ++++||++.++|.++..+
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~  131 (143)
T 3f04_A           96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG  131 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTT
T ss_pred             hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCC
Confidence            54  3499999999998 899999999999999765

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.83  E-value=5.9e-21  Score=144.80  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=92.5

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSL  230 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~  230 (268)
                      ...|+|.+++.|.  .+.|.|.|++|++|+  +..|.+||||++++..++....+++|+++++++||+|||+|.|. +..
T Consensus         5 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~   84 (141)
T 1v27_A            5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   84 (141)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence            3479999999998  889999999999997  55678999999999754434678999999999999999999998 444


Q ss_pred             CCCc--eEEEEEEecCCC-C--CeeeEEEEEeCCccCC
Q psy3954         231 GDPI--ELVVSLHHDISG-L--NVFLGEVHIPLNNKET  263 (268)
Q Consensus       231 ~~~~--~l~i~V~d~~~~-~--~~~lG~~~l~l~~~~~  263 (268)
                      .++.  .|.|+|||++.. +  +++||++.|++.++..
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~  122 (141)
T 1v27_A           85 REFRERMLEITLWDQARVREEESEFLGEILIELETALL  122 (141)
T ss_dssp             TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCC
T ss_pred             HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCC
Confidence            4443  399999999988 5  8999999999998754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.83  E-value=2.9e-20  Score=139.52  Aligned_cols=112  Identities=12%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~  122 (268)
                      ...|.|+|+ +|++|+  +..|.+| ||+       +.++|+++++|+||+|||+|.|.+... ..|.|+|||++ ..++
T Consensus         4 ~~~L~V~v~-~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d-~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVL-CAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHK-KIHK   80 (132)
T ss_dssp             EEEEEEEEE-EEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGG-GTTS
T ss_pred             eEEEEEEEE-EeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECC-CCCC
Confidence            468999999 999998  7788999 998       578999999999999999999998776 45999999999 6765


Q ss_pred             ---CceeEEEEEeccccc-cccCccceecCcccC--CCcccceEEEEEEEE
Q psy3954         123 ---DRVLGKVTIQRSDLH-RISNKEHWFPLTPVT--QDSEVQGKIQIGVLS  167 (268)
Q Consensus       123 ---d~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~--~~~~~~G~i~v~l~~  167 (268)
                         |++||++.++++++. .......|++|....  ......|+|.+++.+
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               899999999999884 344456889987653  234568999999875

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.83  E-value=1.6e-20  Score=141.39  Aligned_cols=98  Identities=17%  Similarity=0.302  Sum_probs=87.3

Q ss_pred             CeEEEEEEEcccCccc-cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEE-ecCC---CcEEEEEEEeC
Q psy3954          53 LGTLRIRIQYTADHIL-QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYAYDR  116 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~-~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v~d~  116 (268)
                      .+.|.|+|+ +|++|+ +.++.+| ||+          .++||+++++|+||+|||+|.|. ++..   ...|.|+|||+
T Consensus        19 ~~~L~V~V~-~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~   97 (134)
T 2b3r_A           19 NGTLFIMVM-HIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSA   97 (134)
T ss_dssp             TTEEEEEEE-EEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEEC
T ss_pred             CCEEEEEEE-EeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEEC
Confidence            579999999 999999 7788999 998          36799999999999999999999 7753   57999999999


Q ss_pred             CCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      | .+++|++||++.++|+++..+...+.|++|.+..
T Consensus        98 d-~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           98 E-SLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             C-SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             C-CCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            9 7889999999999999998877889999997653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.83  E-value=2.3e-20  Score=146.27  Aligned_cols=113  Identities=15%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cC-CCCCC-ceE----------EEeeecccCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QP-HYYED-LCT----------QILNSPSVNPV   89 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~-~~~~d-yv~----------~~~~T~~~~~t   89 (268)
                      .-.+|.++.++.|  .             .+.|.|+|+ +|++|+  +. .+.+| ||+          ..+||+++++|
T Consensus        15 ~~~~G~l~~~l~y--~-------------~~~L~V~v~-~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t   78 (171)
T 2q3x_A           15 TPAMGDIQIGMED--K-------------KGQLEVEVI-RARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT   78 (171)
T ss_dssp             --CCCEEEEEEEE--E-------------TTEEEEEEE-EEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             CCCccEEEEEEEE--C-------------CCEEEEEEE-EeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC
Confidence            3456889988888  2             579999999 999999  53 68999 998          28899999999


Q ss_pred             CCCccCcEEEEEecCCCcEEEEEEE-eCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          90 TSPFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        90 ~nP~wne~f~f~v~~~~~~l~~~v~-d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      +||+|||+|.|.+......|.|+|| |+| .+++|++||++.++|+++..+...+.|++|.+...
T Consensus        79 ~nP~wne~f~f~v~~~~~~L~~~V~~d~d-~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  142 (171)
T 2q3x_A           79 LDPLYQQSLVFDESPQGKVLQVIVWGDYG-RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS  142 (171)
T ss_dssp             SSCEEEEEEECSSCCTTEEEEEEEEEECS-TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred             CCCCCCcEEEEEecCCCCEEEEEEEEcCC-CCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence            9999999999999877899999999 999 78899999999999999987778899999987654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=4.1e-20  Score=137.49  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             CeEEEEEEEcccCcccc-----CCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHILQ-----PHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~-----~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d  117 (268)
                      .+.|.|+|+ +|++|+.     ..|.+| ||+        ..+||+++++++||+|||+|.|.+... ...|.|+|||++
T Consensus         2 ~~~L~v~v~-~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVL-RATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEE-EEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEE-eeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            578999999 9999993     358899 999        577999999999999999999998544 789999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEE
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                       ..+ |++||++.++|+++..+...+.|++|.+.     ..|.|++++.
T Consensus        81 -~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~-----~~g~i~~~le  122 (126)
T 1rlw_A           81 -YVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV-----TEMVLEMSLE  122 (126)
T ss_dssp             -SSC-CEEEEEEEEEGGGSCTTCEEEEEEEETTT-----EEEEEEEEEE
T ss_pred             -CCC-CceeEEEEEEHHHccCCCcEEEEEEcCCC-----ceEEEEEEEE
Confidence             664 88999999999999877778899999762     2577777664

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.83  E-value=6.3e-20  Score=143.81  Aligned_cols=107  Identities=24%  Similarity=0.278  Sum_probs=91.5

Q ss_pred             ccceEEEEEEEEcCCeEEEEEceecCCC--CC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         156 EVQGKIQIGVLSTPTSLMVNVNEASGLT--QV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       156 ~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ...|+|.+++.|..+.|.|.|++|++|+  +. .|.+||||++++..++....+++|+++++++||+|||+|.|.+... 
T Consensus        16 ~~~G~l~~~l~y~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-   94 (171)
T 2q3x_A           16 PAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ-   94 (171)
T ss_dssp             -CCCEEEEEEEEETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT-
T ss_pred             CCccEEEEEEEECCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC-
Confidence            3479999999999999999999999997  32 5789999999998544444688999999999999999999998543 


Q ss_pred             CceEEEEEE-ecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIELVVSLH-HDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~l~i~V~-d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ...|.|+|| |++.+ ++++||++.++|+++..
T Consensus        95 ~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~  127 (171)
T 2q3x_A           95 GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL  127 (171)
T ss_dssp             TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCT
T ss_pred             CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHccc
Confidence            233999999 99988 89999999999999865

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=2.6e-20  Score=139.08  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=90.5

Q ss_pred             cceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCC
Q psy3954          25 YKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTS   91 (268)
Q Consensus        25 ~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~n   91 (268)
                      +..|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ..+||+++++|+|
T Consensus         2 ~~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~n   67 (129)
T 2bwq_A            2 FLSGQLSIKLWFDKV-------------GHQLIVTIL-GAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLE   67 (129)
T ss_dssp             CCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSS
T ss_pred             ceeEEEEEEEEEccC-------------CCEEEEEEE-EeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCC
Confidence            346888888888876             789999999 999999  7788899 998          4689999999999


Q ss_pred             CccCcEEEEEe-cCC---CcEEEEEEEeCCCCCCC--CceeEEEEEeccccccccCccceecCc
Q psy3954          92 PFFGEEFQFDI-PRR---FRHLAVYAYDRDRTSKT--DRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        92 P~wne~f~f~v-~~~---~~~l~~~v~d~d~~~~~--d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      |+|||+|.|.+ +..   ...|.|+|||++ ..++  |++||++.+++.++.... .+.|++|+
T Consensus        68 P~wne~f~f~~~~~~~~~~~~l~~~V~d~d-~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           68 PKWNQTFIYSPVHRREFRERMLEITLWDQA-RVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             CEEEEEEEECSCCGGGGGGCEEEEEEEEC--------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CccccEEEEccCCHHHhcCCeEEEEEEECC-cCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            99999999994 332   579999999999 7776  999999999999987543 78999884

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=4.2e-20  Score=144.89  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=96.8

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSK  121 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~  121 (268)
                      ....+.|.|+|+ +|++|+  +..+.+| ||+     +.+||+++++|+||+|||+|.|.+.. ...|.|+|||+| .++
T Consensus        32 ~~~~~~L~V~V~-~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d-~~~  108 (173)
T 2nq3_A           32 LTMKSQLQITVI-SAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQ-TLK  108 (173)
T ss_dssp             CSCCEEEEEEEE-EEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECC-SSS
T ss_pred             cCCceEEEEEEE-EeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECC-CCC
Confidence            456789999999 999998  3334589 999     78999999999999999999999865 689999999999 788


Q ss_pred             CCceeEEEEEecccccccc-----CccceecCcccCCCcccceEEEEEEEEc
Q psy3954         122 TDRVLGKVTIQRSDLHRIS-----NKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +|++||++.+++.++....     ....|++|..........|+|.+++.+.
T Consensus       109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l  160 (173)
T 2nq3_A          109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  160 (173)
T ss_dssp             CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeee
Confidence            9999999999999886432     1256999987644455689999998764

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.83  E-value=3.6e-20  Score=140.47  Aligned_cols=112  Identities=15%  Similarity=0.214  Sum_probs=97.0

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSP   92 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP   92 (268)
                      ..|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ..+||+++++|+||
T Consensus         6 ~~G~i~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP   71 (141)
T 1v27_A            6 SGGQLSIKLWFDKV-------------GHQLIVTIL-GAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP   71 (141)
T ss_dssp             CCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSC
T ss_pred             cccEEEEEEEEeCC-------------CCEEEEEEE-EccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCC
Confidence            46888888888876             689999999 999999  7788899 998          47899999999999


Q ss_pred             ccCcEEEEE-ecCC---CcEEEEEEEeCCCCCCC--CceeEEEEEeccccccccCccceecCcccCC
Q psy3954          93 FFGEEFQFD-IPRR---FRHLAVYAYDRDRTSKT--DRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        93 ~wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~--d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      +|||+|.|. ++..   ...|.|+|||++ ..++  |++||++.+++.++... ..+.|++|.+...
T Consensus        72 ~wne~f~f~~~~~~~~~~~~l~i~V~d~d-~~~~~~~~~lG~~~i~l~~l~~~-~~~~W~~L~~~~~  136 (141)
T 1v27_A           72 KWNQTFIYSPVHRREFRERMLEITLWDQA-RVREEESEFLGEILIELETALLD-DEPHWYKLQTHDS  136 (141)
T ss_dssp             CCCCCCEECSCCTTGGGTCEEEEEEEEBC-SSSSCCBCCCEEEEEEGGGCCCS-SEEEEEECBCCSS
T ss_pred             ccccEEEEccCCHHHhcCCEEEEEEEECC-CCcCCCCceEEEEEEEccccCCC-CCCceEECccccc
Confidence            999999999 4433   589999999999 7776  89999999999998754 3789999987653

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=142.83  Aligned_cols=116  Identities=22%  Similarity=0.340  Sum_probs=100.1

Q ss_pred             cccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCcccc---CC------CCCC-ceE--------EEeeec
Q psy3954          23 ATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQ---PH------YYED-LCT--------QILNSP   84 (268)
Q Consensus        23 ~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~---~~------~~~d-yv~--------~~~~T~   84 (268)
                      ....+|.++.++.|...             .+.|.|+|+ +|++|+.   .+      +.+| ||+        ..+||+
T Consensus         8 ~~~~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~   73 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDLL-------------HNHLTVRVI-EARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTG   73 (147)
T ss_dssp             SCCCCCEEEEEEEEETT-------------TTEEEEEEE-EEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECC
T ss_pred             CCCcceEEEEEEEEcCC-------------CCEEEEEEE-EEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEee
Confidence            34578899999999876             789999999 9999982   23      4789 998        367999


Q ss_pred             ccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          85 SVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        85 ~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      ++++++||+|||+|.|.++..   ...|.|+|||++ .+++|++||++.++|.++........|+.|.+..+
T Consensus        74 v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  144 (147)
T 2enp_A           74 VKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD-KFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP  144 (147)
T ss_dssp             CCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCS-TTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred             cccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECC-CCcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence            999999999999999998764   468999999999 78899999999999999987777789999987653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=3.9e-20  Score=140.50  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=96.5

Q ss_pred             cceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCC
Q psy3954          25 YKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTS   91 (268)
Q Consensus        25 ~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~n   91 (268)
                      ...|.++.++.|...             .+.|.|+|+ +|++|+  +..+ +| ||+          .++||+++++|+|
T Consensus         8 ~~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~n   72 (142)
T 2dmg_A            8 SPLGQIQLTIRHSSQ-------------RNKLIVVVH-ACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLN   72 (142)
T ss_dssp             CSSCEEEEEEEEETT-------------TTEEEEEEE-EEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSS
T ss_pred             CCcceEEEEEEEeCC-------------CCEEEEEEE-EeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCC
Confidence            346888888888765             689999999 999999  6677 99 998          3569999999999


Q ss_pred             CccCcEEEEEecCC---CcEEEEEEEeCCCCCC--CCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          92 PFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK--TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        92 P~wne~f~f~v~~~---~~~l~~~v~d~d~~~~--~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      |+|||+|.|.++..   ...|.|+|||++ .++  .|++||++.+++.++......+.|++|.+...
T Consensus        73 P~wne~f~f~v~~~~l~~~~L~i~V~d~d-~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A           73 PVFDQSFDFSVSLPEVQRRTLDVAVKNSG-GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CEEEEEEEECCCHHHHHHCEEEEEEEECC-CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCcCceEEEEecHHHhCcCEEEEEEEECC-CccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            99999999998764   469999999999 664  35799999999999987778889999987653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=1e-19  Score=137.51  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=96.2

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE--------EEeeecccCCCCCCc
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT--------QILNSPSVNPVTSPF   93 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~--------~~~~T~~~~~t~nP~   93 (268)
                      ..|.+..++.|...             .+.|.|+|+ +|++|+  +.. +.+| ||+        ..+||+++++++||+
T Consensus         7 ~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~   72 (138)
T 1ugk_A            7 GLGTLFFSLEYNFE-------------RKAFVVNIK-EARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA   72 (138)
T ss_dssp             CCCEEEEEEEEEGG-------------GTEEEEEEE-EEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE
T ss_pred             ccEEEEEEEEEECC-------------CCEEEEEEE-EeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCc
Confidence            46888888888866             789999999 999999  653 8899 999        478999999999999


Q ss_pred             cCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCc-cceecCcccC
Q psy3954          94 FGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFPLTPVT  152 (268)
Q Consensus        94 wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~-~~w~~L~~~~  152 (268)
                      |||+|.|. ++.+   ...|.|+|||+| .+++|++||++.++|.++....+. ..|++|.+..
T Consensus        73 wne~f~f~~v~~~~~~~~~l~i~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A           73 FDETFTFYGIPYTQIQELALHFTILSFD-RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             EEEEEEEECCCSTTGGGCEEEEEEEEEC-SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             EeeEEEEcCcCHHHhccCEEEEEEEECC-CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            99999996 7654   468999999999 788999999999999999865544 5679997754

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.82  E-value=3.5e-20  Score=142.61  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             ccccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCC
Q psy3954          22 HATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNP   88 (268)
Q Consensus        22 ~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~   88 (268)
                      ++...-|.+..++.|...             .+.|.|+|+ +|++|+  + .+.+| ||+          .+++|+++++
T Consensus         8 ~~~~~~G~~~lsL~y~~~-------------~~~L~V~v~-~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~   72 (153)
T 3fbk_A            8 HSHKVQGAGQLRLSIDAQ-------------DRVLLLHII-EGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD   72 (153)
T ss_dssp             -----CCCCEEEEEEEES-------------SSEEEEEEE-EEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTT
T ss_pred             CccCCCCEEEEEEEEECC-------------CCEEEEEEE-EeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCC
Confidence            445566788888889887             899999999 999999  5 68899 998          3589999999


Q ss_pred             CCCCccCcEEEEEecCC--CcEEEEEEEeCCCCCCC-CceeEEEEEecccccc-ccCccceecCcccCC
Q psy3954          89 VTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRTSKT-DRVLGKVTIQRSDLHR-ISNKEHWFPLTPVTQ  153 (268)
Q Consensus        89 t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~~~~-d~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~  153 (268)
                      |+||+|||+|.|.++..  ...|.|+|||.+ .+++ |++||++.+++.++.. ......|++|.+...
T Consensus        73 t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d-~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           73 CRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA-SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             CSSCEEEEEEEEECCGGGTTSEEEEEEEECC-SSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             CCCCccccEEEEecccHHhCCEEEEEEEeCC-CCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence            99999999999998543  567999999999 6776 9999999999999984 677889999987653

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.81  E-value=5.6e-20  Score=139.66  Aligned_cols=113  Identities=17%  Similarity=0.220  Sum_probs=97.8

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT   90 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~   90 (268)
                      .-.+|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ..+||+++++++
T Consensus        12 ~~~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~   77 (142)
T 2chd_A           12 ATTLGALEFSLLYDQD-------------NSNLQCTII-RAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR   77 (142)
T ss_dssp             --CCCEEEEEEEEEGG-------------GTEEEEEEE-EEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCS
T ss_pred             CCccceEEEEEEEeCC-------------CCEEEEEEE-EecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCC
Confidence            3457889999888865             689999999 999999  7788999 998          367999999999


Q ss_pred             CCccCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          91 SPFFGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        91 nP~wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      ||+|||+|.|. ++..   ...|.|+|||++ .+++|++||++.+++.++..+.....|++|+++
T Consensus        78 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d-~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           78 NPVWNETLQYHGITEEDMQRKTLRISVCDED-KFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             SCEEEEEEEEESCCHHHHHHCEEEEEEEEEC-TTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             CCcCcCEEEEcccCHHHccCCEEEEEEEECC-CCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            99999999999 6554   378999999999 788899999999999999887778888888653

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.81  E-value=1.8e-19  Score=136.08  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=90.2

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          .+++|+++++++||+|
T Consensus         3 G~l~~sl~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~w   68 (138)
T 3n5a_A            3 GELLLSLCYNPS-------------ANSIIVNII-KARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIF   68 (138)
T ss_dssp             CEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEE
T ss_pred             cEEEEEEEEcCC-------------CCeEEEEEE-EeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcC
Confidence            677888888766             789999999 999999  7788999 998          3789999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      ||+|.|.++..   ...|.|+|||.+ .+++|++||++.+++.++.  .+.+.|++|.
T Consensus        69 ne~f~f~v~~~~l~~~~l~~~V~d~~-~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~  123 (138)
T 3n5a_A           69 NESFAFDIPTEKLRETTIIITVMDKD-KLSRNDVIGKIYLSWKSGP--GEVKHWKDMI  123 (138)
T ss_dssp             EEEEEEECCGGGGGGEEEEEEEEECC-SSSCCEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred             cceEEEECChhhcCceEEEEEEEECC-CCCCCcEEEEEEEccccCC--hHHHHHHHHH
Confidence            99999998776   368999999999 7889999999999998753  3455666664

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.81  E-value=3.2e-19  Score=138.11  Aligned_cols=114  Identities=18%  Similarity=0.254  Sum_probs=97.2

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT   90 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~   90 (268)
                      ....|.++.+++|...             .+.|.|+|+ +|++|+  +..+.+| ||+          ..+||+++++++
T Consensus         8 ~~~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~   73 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPT-------------AGKLTVVIL-EAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTL   73 (159)
T ss_dssp             GGCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred             cCcCCeEEEEEEEcCC-------------CCEEEEEEE-EeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCC
Confidence            3467899999988876             789999999 999999  7788999 998          367999999999


Q ss_pred             CCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccc------------cccCccceecCcccC
Q psy3954          91 SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH------------RISNKEHWFPLTPVT  152 (268)
Q Consensus        91 nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~~  152 (268)
                      ||+|||+|.|.++..   ...|.|+|||+| .+++|++||++.+++..+.            .......|++|.+..
T Consensus        74 nP~wne~f~f~v~~~~l~~~~l~i~V~d~d-~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A           74 NPYYNESFSFEVPFEQIQKVQVVVTVLDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             SCEEEEEEEEECCGGGGGGCEEEEEEEECC-SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             CCcccceEEEEcCHHHhCCcEEEEEEEECC-CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            999999999998765   468999999999 7889999999999998541            234567899887654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=4.5e-20  Score=140.18  Aligned_cols=110  Identities=24%  Similarity=0.365  Sum_probs=95.7

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----E--------------Eeee
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----Q--------------ILNS   83 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~--------------~~~T   83 (268)
                      ..|.++.++.|.               .+.|.|+|+ +|++|+  +..|.+| ||+     .              .+||
T Consensus         5 ~~G~i~~~l~y~---------------~~~L~V~v~-~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT   68 (142)
T 1rh8_A            5 ITGEIQLQINYD---------------LGNLIIHIL-QARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE---------------TTEEEEEEE-EEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEc---------------CCEEEEEEE-EecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeec
Confidence            467888888776               368999999 999999  7788999 999     1              3789


Q ss_pred             cccCCCCCCccCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954          84 PSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus        84 ~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      +++++|+||+|||+|.|. ++.+   ...|.|+|||+| .+++|++||++.+++.++........|++|.+..
T Consensus        69 ~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEEC-SSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             cccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECC-CCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            999999999999999997 6542   679999999999 7889999999999999998777788999998754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=2.7e-19  Score=137.02  Aligned_cols=109  Identities=17%  Similarity=0.313  Sum_probs=93.7

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCC
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSP   92 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP   92 (268)
                      ..|.++.++.|.               .+.|.|+|+ +|++|+  +..+.+| ||+          ..+||+++++++||
T Consensus        18 ~~G~l~~~l~~~---------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   81 (149)
T 1a25_A           18 RRGRIYIQAHID---------------REVLIVVVR-DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP   81 (149)
T ss_dssp             TTCEEEEEEEES---------------SSEEEEEEE-EEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred             cceEEEEEEEec---------------CCEEEEEEE-EeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCC
Confidence            457777777662               368999999 999999  7788899 998          36799999999999


Q ss_pred             ccCcEEEEEecCC--CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954          93 FFGEEFQFDIPRR--FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus        93 ~wne~f~f~v~~~--~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      +|||+|.|.+...  ...|.|+|||++ .+++|++||++.+++.++... ..+.|++|.+..
T Consensus        82 ~wne~f~f~v~~~~~~~~L~i~V~d~d-~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~  141 (149)
T 1a25_A           82 EWNETFRFQLKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE  141 (149)
T ss_dssp             EEEEEEEEECCSGGGGCEEEEEEEECC-SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHH
T ss_pred             cCCcEEEEEeccccCCCEEEEEEEECC-CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCC
Confidence            9999999998765  568999999999 788899999999999998754 578999997653

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.79  E-value=2.8e-19  Score=137.50  Aligned_cols=110  Identities=17%  Similarity=0.223  Sum_probs=89.9

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT   90 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~   90 (268)
                      ....|.+..++.|...             .+.|.|+|+ +|++|+  +..+.+| ||+          .++||+++++|+
T Consensus        13 ~~~~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~   78 (153)
T 1w15_A           13 PSGRGELLVSLCYQST-------------TNTLTVVVL-KARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTP   78 (153)
T ss_dssp             ---CCEEEEEEEEETT-------------TTEEEEEEE-EEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred             CccccEEEEEEEEcCC-------------CCEEEEEEE-EeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCC
Confidence            3456888888888876             789999999 999999  7788899 999          267999999999


Q ss_pred             CCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          91 SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        91 nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||+|||+|.|.++..   ...|.|+|||++ .+++|++||++.+++.+  .....+.|++|..
T Consensus        79 nP~wne~f~f~v~~~~l~~~~l~v~V~d~d-~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A           79 NAVFNELFVFDIPCESLEEISVEFLVLDSE-RGSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             SEEEEEEEEEECCSSSSTTEEEEEEEEECC-TTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             CCeecceEEEECCHHHhCceEEEEEEEeCC-CCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            999999999998776   478999999999 78899999999999987  3445677877754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.79  E-value=6.1e-19  Score=137.51  Aligned_cols=109  Identities=21%  Similarity=0.313  Sum_probs=91.7

Q ss_pred             cccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCC
Q psy3954          23 ATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPV   89 (268)
Q Consensus        23 ~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t   89 (268)
                      .....|.+..++.|...             .+.|.|+|+ +|++|+  +..|.+| ||+          ..+||+++++|
T Consensus        19 ~~~~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t   84 (166)
T 2cm5_A           19 DIEERGKILVSLMYSTQ-------------QGGLIVGII-RCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT   84 (166)
T ss_dssp             -CCCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSC
T ss_pred             CcCccceEEEEEEEECC-------------CCEEEEEEE-EeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCC
Confidence            34567889999888866             789999999 999999  7788999 998          37899999999


Q ss_pred             CCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          90 TSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        90 ~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      +||+|||+|.|.++..   ...|.|+|||++ .+++|++||++.+++.++.  ...+.|++|
T Consensus        85 ~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d-~~~~~~~iG~~~i~l~~~~--~~~~~W~~l  143 (166)
T 2cm5_A           85 LNPEFNEEFFYDIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGISAKG--ERLKHWYEC  143 (166)
T ss_dssp             SSCEEEEEEEEECCGGGGGGCEEEEEEEECC-SSSCCEEEEEEEEETTCCH--HHHHHHHHH
T ss_pred             CCCcccceEEEEcchHhcCCCEEEEEEEECC-CCCCCcEEEeEEEecccCC--chhHHHHHH
Confidence            9999999999998764   569999999999 7889999999999999753  233444444

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=5e-19  Score=132.88  Aligned_cols=94  Identities=24%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+  +..|.+||||++.+.     ..+++|+++++++||+|||+|.|.+... ...|.|+|||++..
T Consensus        12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~~   85 (133)
T 2ep6_A           12 VGILQVKVLKAADLLAADFSGKSDPFCLLELG-----NDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD   85 (133)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----TEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred             ceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC-----CEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCCC
Confidence            577899999999997  556889999999997     4578999999999999999999998643 23499999999998


Q ss_pred             -CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 -LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                       ++++||++.+++.++..+...|
T Consensus        86 ~~~~~lG~~~i~l~~l~~~~~~w  108 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDGQPNC  108 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSSCCEE
T ss_pred             CCCCeeEEEEEEHHHccCCCceE
Confidence             8999999999999998766555

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=1.2e-18  Score=129.43  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             CCeEEEEEceecCCCC-----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~-----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      .+.|.|+|++|++|+.     ..|.+||||++++...  ...+++|+++++++||+|||+|.|.+.......|.|+|||+
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~   79 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT--PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   79 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS--TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEEC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccC--CCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEEC
Confidence            4689999999999984     3588999999999722  23678999999999999999999998665555699999999


Q ss_pred             CCCCCeeeEEEEEeCCccCCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~~  265 (268)
                      +..++++||++.++++++..+.
T Consensus        80 d~~~~~~iG~~~i~l~~l~~~~  101 (126)
T 1rlw_A           80 NYVMDETLGTATFTVSSMKVGE  101 (126)
T ss_dssp             CSSCCEEEEEEEEEGGGSCTTC
T ss_pred             CCCCCceeEEEEEEHHHccCCC
Confidence            8778999999999999987654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=3.8e-18  Score=144.24  Aligned_cols=106  Identities=26%  Similarity=0.383  Sum_probs=92.7

Q ss_pred             cceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         157 VQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       157 ~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ..|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..+  ...+++|+++++++||+|||+|.|.+...+
T Consensus         4 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~~~~T~~~~~~~nP~wne~f~f~v~~~~   81 (284)
T 2r83_A            4 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKKKFETKVHRKTLNPVFNEQFTFKVPYSE   81 (284)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETC--TTSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred             ceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcC--CCceEeCCcccCCCCCeeCceEEEEechHH
Confidence            479999999995  999999999999997  55678999999999732  234789999999999999999999987766


Q ss_pred             Cc--eEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         233 PI--ELVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       233 ~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +.  .|.|+|||++.+ ++++||++.++|.++..+
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~  116 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG  116 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCS
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccC
Confidence            54  399999999988 899999999999998664

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.8e-18  Score=129.83  Aligned_cols=90  Identities=23%  Similarity=0.266  Sum_probs=79.2

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC---ceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP---IELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~---~~l~i~V~d~  243 (268)
                      .+.|.|+|++|++|+  +. |.+||||++++.     ..+++|+++++++||+|||.|.|.+....+   ..|.|+|||+
T Consensus         6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFK-----DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSS-SCCCEEEEEECS-----SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC-----CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            478999999999997  44 889999999997     457999999999999999999999976533   3399999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      +.. ++++||++.+++.++..+
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~  101 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGD  101 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSS
T ss_pred             CCCCCCceEEEEEEEHHHhccC
Confidence            998 899999999999998664

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.75  E-value=3.8e-18  Score=130.38  Aligned_cols=94  Identities=22%  Similarity=0.360  Sum_probs=80.7

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+  +..|.+||||++.+.     ..+++|+++++++||.|||.|.|.+.... +.|.|+|||++..
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~l~~~v~d~d~~   89 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----KTKKRTKTIYGNLNPVWEENFHFECHNSS-DRIKVRVLDEDDD   89 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCCSCSSCEEEEEEEEEECSTT-CEEEEEEEECCCS
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----CEEEECCccCCCCCCCcccEEEEEecCCC-CEEEEEEEECCCC
Confidence            688999999999997  567889999999995     56789999999999999999999986543 4599999999873


Q ss_pred             ------------CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 ------------LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 ------------~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                                  ++++||++.++++++..+...|
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w  123 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW  123 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCcCCCCEE
Confidence                        7999999999999986544333

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.74  E-value=6.6e-18  Score=143.70  Aligned_cols=100  Identities=24%  Similarity=0.340  Sum_probs=87.8

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      ...|+|.+++.|.  .+.|.|+|++|++|+  +..|.+||||++++..+  ...+++|+++++++||+|||+|.|.+...
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~   81 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVPLA   81 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS--TTSCEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcC--CCeeEeCCccCCCCCCcEeeEEEEEecHH
Confidence            3479999999997  889999999999997  55788999999998622  24678999999999999999999999776


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEe
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIP  257 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~  257 (268)
                      ++..  |.|+|||+|.+ ++++||++.++
T Consensus        82 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~  110 (296)
T 1dqv_A           82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLD  110 (296)
T ss_dssp             GGSSCCCEEEEEECCSSSCCCEEEEEECC
T ss_pred             HhcCCEEEEEEEEcCCCCCCceEEEEEec
Confidence            6653  99999999998 89999999996

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.74  E-value=2.6e-17  Score=126.41  Aligned_cols=96  Identities=27%  Similarity=0.338  Sum_probs=77.6

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~  245 (268)
                      .+.|.|+|++|++|+  +..|.+||||++++..... ...+++|+++++++||+|||+|.|.+... ...|.|+|||++.
T Consensus        19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~d~   97 (153)
T 3b7y_A           19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDENR   97 (153)
T ss_dssp             CEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEECCS
T ss_pred             ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEECCC
Confidence            467889999999997  4567899999999983322 24678999999999999999999998753 2349999999999


Q ss_pred             C-CCeeeEEEEEeCCccCCCC
Q psy3954         246 G-LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~~~  265 (268)
                      . ++++||++.|++.++..+.
T Consensus        98 ~~~d~~iG~~~i~l~~l~~~~  118 (153)
T 3b7y_A           98 LTRDDFLGQVDVPLYPLPTEN  118 (153)
T ss_dssp             SSCCEEEEEEEEECCSCCBCC
T ss_pred             CcCCCeeEEEEEEHHHcccCC
Confidence            8 8999999999999987643

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.73  E-value=5.8e-18  Score=130.08  Aligned_cols=88  Identities=23%  Similarity=0.343  Sum_probs=74.6

Q ss_pred             CCeEEEEEceecCCCCC------------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceE
Q psy3954         169 PTSLMVNVNEASGLTQV------------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIEL  236 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l  236 (268)
                      .+.|.|+|++|++|+..            .|.+||||++.+.    .....+|+++++++||+|||.|.|.+..  ...|
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~----~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L  101 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD----QVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL  101 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET----TEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC----CEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence            57899999999999732            2679999999986    1335799999999999999999999853  2349


Q ss_pred             EEEEEecCCC-CCeeeEEEEEeCCccC
Q psy3954         237 VVSLHHDISG-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       237 ~i~V~d~~~~-~~~~lG~~~l~l~~~~  262 (268)
                      .|+|||++.+ ++++||++.|++.++.
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~  128 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELL  128 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHH
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhh
Confidence            9999999988 8999999999998775

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.73  E-value=1.4e-17  Score=124.56  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=82.1

Q ss_pred             CeEEEEEEEcccCccccCCCCCC-ceE---EEeeecccC-CCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954          53 LGTLRIRIQYTADHILQPHYYED-LCT---QILNSPSVN-PVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG  127 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~---~~~~T~~~~-~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG  127 (268)
                      .+.|.|+|+ +|++|+ ..|.+| ||+   +..+|++++ +++||+|||+|.|.+......|.|+|||+|  +++|++||
T Consensus         4 ~~~L~V~V~-~A~~l~-~~g~~DPYv~v~~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d--~~~dd~iG   79 (131)
T 2cjt_A            4 MSLLCVGVK-KAKFDG-AQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG--LIWDTMVG   79 (131)
T ss_dssp             CEEEEEEEE-EEECSS-CGGGCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC--SSCEEEEE
T ss_pred             ceEEEEEEE-EeECCC-CCCCcCeEEEEEecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC--CCCCCeEE
Confidence            578999999 999886 467889 999   344566655 699999999999999877778999999999  56799999


Q ss_pred             EEEEecccccccc--CccceecCccc--CCCcc-------cceEEEEEEEEc
Q psy3954         128 KVTIQRSDLHRIS--NKEHWFPLTPV--TQDSE-------VQGKIQIGVLST  168 (268)
Q Consensus       128 ~~~i~l~~l~~~~--~~~~w~~L~~~--~~~~~-------~~G~i~v~l~~~  168 (268)
                      ++.++|+++....  ....|.++...  ..+..       ..+.+.+.++|+
T Consensus        80 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~  131 (131)
T 2cjt_A           80 TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  131 (131)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             EEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence            9999999986432  12234444321  11222       234577777764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.72  E-value=3.9e-17  Score=128.47  Aligned_cols=95  Identities=25%  Similarity=0.317  Sum_probs=77.7

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~  245 (268)
                      .+.|.|+|++|++|+  +..|.+||||++++..... ...+++|+++++++||.|||.|.|.+... ...|.|+|||++.
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~d~   85 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDENR   85 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEECC-
T ss_pred             cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEECCC
Confidence            467899999999997  5678899999999983222 12678999999999999999999998743 2459999999999


Q ss_pred             C-CCeeeEEEEEeCCccCCC
Q psy3954         246 G-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       246 ~-~~~~lG~~~l~l~~~~~~  264 (268)
                      + ++++||++.|+|..+..+
T Consensus        86 ~~~d~~lG~~~i~l~~l~~~  105 (176)
T 3m7f_B           86 LTRDDFLGQVDVPLYPLPTE  105 (176)
T ss_dssp             ---CEEEEEEEEESCSCCBC
T ss_pred             CCCCcEEEEEEEEHHHcccc
Confidence            8 899999999999999764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.71  E-value=2e-17  Score=123.91  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=75.1

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      ..|.|+|++|++|+  +..|.+||||++.+...   ..+++|+++++++||+|||+|.|.+...+  .|.|+|||++.. 
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~l~~~v~d~d~~~   79 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--SITISVWNHKKIH   79 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEEEEEETTC--CEEEEEEEGGGTT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEEEEeCCCC--EEEEEEEECCCCC
Confidence            46899999999996  56788999999998622   36789999999999999999999986543  399999999988 


Q ss_pred             C---CeeeEEEEEeCCcc
Q psy3954         247 L---NVFLGEVHIPLNNK  261 (268)
Q Consensus       247 ~---~~~lG~~~l~l~~~  261 (268)
                      +   +++||++.++++++
T Consensus        80 ~~~~d~~lG~~~i~l~~l   97 (132)
T 3pyc_A           80 KKQGAGFLGCVRLLSNAI   97 (132)
T ss_dssp             SSTTTTEEEEEEECHHHH
T ss_pred             CCCCCCceEEEEEeHHHh
Confidence            4   79999999998876

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.70  E-value=1.7e-17  Score=124.94  Aligned_cols=86  Identities=30%  Similarity=0.408  Sum_probs=75.5

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      +.|.|+|++|++|+  +..|.+||||++++.     ..+++|++++ ++.||+|||+|.|.+.. ....|.|+|||++.+
T Consensus        10 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A           10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----TQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVG   83 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----SCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSC
T ss_pred             EEEEEEEEeccCCCCcccCCCcCceEEEEEC-----CccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCC
Confidence            67889999999997  456789999999987     3467999998 89999999999999875 334499999999988


Q ss_pred             -CCeeeEEEEEeCCcc
Q psy3954         247 -LNVFLGEVHIPLNNK  261 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~  261 (268)
                       ++++||++.|++.++
T Consensus        84 ~~d~~lG~~~i~l~~l   99 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPV   99 (136)
T ss_dssp             TTTCCSEEEEEESHHH
T ss_pred             CCCceEEEEEEEHHHh
Confidence             899999999999887

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.70  E-value=1.5e-17  Score=125.21  Aligned_cols=89  Identities=21%  Similarity=0.344  Sum_probs=74.9

Q ss_pred             CCeEEEEEceecCCCCC--CC-----------CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954         169 PTSLMVNVNEASGLTQV--NG-----------QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE  235 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~--~g-----------~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~  235 (268)
                      .+.|.|+|++|++|+..  .+           .+||||++.+.    .....+|+++++++||+|||+|.|.+...  ..
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~   78 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD----DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RK   78 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET----TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC----CeEeeeeeEECCCcCCccCCEEEEEecCC--CE
Confidence            36799999999999732  22           39999999985    13457899999999999999999998643  45


Q ss_pred             EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         236 LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      |.|+|||++.. ++++||++.++++++..
T Consensus        79 L~~~V~d~d~~~~dd~iG~~~i~l~~l~~  107 (136)
T 1gmi_A           79 IELAVFHDAPIGYDDFVANCTIQFEELLQ  107 (136)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHTS
T ss_pred             EEEEEEeCCCCCCCCEEEEEEEEHHHhcc
Confidence            99999999988 89999999999998865

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.69  E-value=8.2e-17  Score=146.82  Aligned_cols=110  Identities=19%  Similarity=0.301  Sum_probs=94.9

Q ss_pred             CCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCC
Q psy3954          51 QDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSK  121 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~  121 (268)
                      .+.+.|.|+|+ +|++|+  +..|.+| ||+     ..++|+++++|+||+|||+|.|.+... ...|.|+|||+| .++
T Consensus       384 ~~~~~l~v~v~-~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d-~~~  461 (510)
T 3jzy_A          384 SGIGRLMVHVI-EATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRD-QFS  461 (510)
T ss_dssp             --CEEEEEEEE-EEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECC-SSS
T ss_pred             CCCceEEEEec-eeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC-CCC
Confidence            45689999999 999998  7789999 999     789999999999999999999998776 578999999999 788


Q ss_pred             CCceeEEEEEeccccccccC----ccceecCcccCCCcccceEEEEEEEE
Q psy3954         122 TDRVLGKVTIQRSDLHRISN----KEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       122 ~d~~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      +|++||++.+++.++..+..    ...|++|.+.     ..|+|.+++.+
T Consensus       462 ~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-----~~G~i~l~~~l  506 (510)
T 3jzy_A          462 PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV-----PTGEVWVRFDL  506 (510)
T ss_dssp             SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS-----SSCEEEEEEEE
T ss_pred             CCCceEEEEEEHHHhccccCCCCceeeeecCCCC-----CCceEEEEEEE
Confidence            99999999999999875443    6789988754     26888887764

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.69  E-value=8.1e-17  Score=119.37  Aligned_cols=110  Identities=12%  Similarity=0.145  Sum_probs=93.5

Q ss_pred             CeEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccC-CCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCC
Q psy3954          53 LGTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVN-PVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~-~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~  122 (268)
                      .-.|+|+|. +|.+||   +.+| |++     .+++|++++ +++||+|||.|.|++...   +..|.+.|+|++ .+++
T Consensus        20 ~msL~V~l~-~a~~Lp---g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~-~v~~   94 (144)
T 3l9b_A           20 HMALIVHLK-TVSELR---GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS-KVFS   94 (144)
T ss_dssp             CEEEEEEEE-EEESCC---SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC-TTSC
T ss_pred             cEEEEEEEE-EecCCC---CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc-cccC
Confidence            457999999 999999   6889 998     899999998 699999999999997766   789999999999 8999


Q ss_pred             CceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         123 DRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      +++||++.++|+++........+.+|..... ....++|.+++.|.
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~-~~~~a~I~l~l~Y~  139 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRVEVSDTLIDDNN-AIIKTSLSMEVRYQ  139 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEEEEEEEEECTTS-CEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEhHHhccCCeEEEeecccCCCC-CccccEEEEEEEec
Confidence            9999999999999986665555556654442 23458999999986

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.69  E-value=1.1e-16  Score=148.48  Aligned_cols=142  Identities=16%  Similarity=0.188  Sum_probs=111.2

Q ss_pred             eeccccccceEEEeeeeeeccCcccccccccc----------cCCCeEEEEEEEcccCccc--c--CCCCCC-ceE----
Q psy3954          18 LMVNHATYKLMVKHTAYKYYLQPRKRLTANQI----------IQDLGTLRIRIQYTADHIL--Q--PHYYED-LCT----   78 (268)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~----------~~~~~~L~V~v~~~a~~L~--~--~~~~~d-yv~----   78 (268)
                      .++|++.|.-+.-   ..|.++|.........          ....+.|.|+|+ +|++|+  +  ..+.+| ||+    
T Consensus       454 m~ln~g~F~~ng~---~GYvlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi-~A~~L~~~d~~~~~~~DPYV~V~l~  529 (624)
T 1djx_A          454 MDVYLGCFQDNGG---CGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRII-SGQQLPKVNKNKNSIVDPKVIVEIH  529 (624)
T ss_dssp             HHHHHHHHHSGGG---CSEEECCGGGGCTTCCCCTTSCCSSTTCCCEEEEEEEE-EEESCCCCSSCSSSCCCEEEEEEEE
T ss_pred             HhHHHHHhhcCCC---CccEECCHHHcCCCCCcCcccccccCCccceEEEEEEE-EcCCCCcccccccCCCCcEEEEEEe
Confidence            4588888875333   2799998875544211          125679999999 999999  4  368899 998    


Q ss_pred             ------EEeeecccCCC-CCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          79 ------QILNSPSVNPV-TSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        79 ------~~~~T~~~~~t-~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                            .++||++++++ +||+|||+|.|.+... ...|+|+|||+| .+++|++||++.+||..+..+   .+|++|..
T Consensus       530 g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D-~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d  605 (624)
T 1djx_A          530 GVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD-SSSKNDFIGQSTIPWNSLKQG---YRHVHLLS  605 (624)
T ss_dssp             SSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECC-SSSCCEEEEEEEEEGGGBCCE---EEEEEEEC
T ss_pred             cCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcC-CCCCCceeEEEEEEHHHcCCC---cEEEeCCC
Confidence                  47899999998 9999999999998876 478999999999 788999999999999999753   35888866


Q ss_pred             cCCCcccceEEEEEEEE
Q psy3954         151 VTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       151 ~~~~~~~~G~i~v~l~~  167 (268)
                      .....-..|.|.+.+.+
T Consensus       606 ~~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          606 KNGDQHPSATLFVKISI  622 (624)
T ss_dssp             TTSCEEEEEEEEEEEEE
T ss_pred             CCcCCCCceEEEEEEEE
Confidence            54333346788887765

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=9.6e-17  Score=125.68  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             CCeEEEEEceecCCC-C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT-Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+ . ..+.+||||++++.     ..+++|+++++++||+|||.|.|.+.  ....|.|+|||++.+
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~-----~~~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD-----GQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTL  107 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSS
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEEC-----CEEeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCC
Confidence            567899999999997 2 33449999999996     37899999999999999999999884  234499999999998


Q ss_pred             -CCeeeEEEEEeCCccC
Q psy3954         247 -LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~  262 (268)
                       ++++||++.+++.++.
T Consensus       108 ~~dd~lG~~~i~l~~l~  124 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETL  124 (173)
T ss_dssp             SCCEEEEEEEEEHHHHH
T ss_pred             CCCceEEEEEEEHHHhc
Confidence             8999999999998774

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.67  E-value=4.3e-16  Score=141.60  Aligned_cols=116  Identities=17%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             ccCcc--cccccccccCCCeEEEEEEEcccCccc-cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEec-C-C
Q psy3954          37 YLQPR--KRLTANQIIQDLGTLRIRIQYTADHIL-QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIP-R-R  105 (268)
Q Consensus        37 ~~~p~--~~~~~~~~~~~~~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~-~-~  105 (268)
                      ..+|.  ..++.-....+.+.|.|+|+ +|++|+ |..|.+| ||+     +.+||+++++++||+|||+|.|.+. . .
T Consensus       375 ~C~~~~~t~~~~C~~~~~~~~L~V~V~-~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~  453 (540)
T 3nsj_A          375 ECQDSKVTNQDCCPRQRGLAHLVVSNF-RAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLST  453 (540)
T ss_dssp             EESCTTTBCGGGCBSSTTEEEEEEEEE-EEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTT
T ss_pred             eCCCCCCcccccccccCcccEEEEEEE-EccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCC
Confidence            34444  55555556677899999999 999999 8888999 998     6799999999999999999999853 2 4


Q ss_pred             CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEE
Q psy3954         106 FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       106 ~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                      .+.|+|+|||+| ..++|++||++.++|..    ...+.|++|.        .|.|++++.
T Consensus       454 ~~~L~~~V~D~D-~~~~dD~LG~~~~~L~~----g~~~~~~~l~--------~G~l~~~~~  501 (540)
T 3nsj_A          454 GGPLRVQVWDAD-YGWDDDLLGSCDRSPHS----GFHEVTCELN--------HGRVKFSYH  501 (540)
T ss_dssp             CCCEEEEEEECC-SSSCCEEEEEEEECCCS----EEEEEEEECS--------SSEEEEEEE
T ss_pred             CCEEEEEEEECC-CCCCCCEEEEEEEEeeC----CcEEEEEEcC--------CeEEEEEEE
Confidence            789999999999 78889999999999872    2356788763        377777643

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.66  E-value=2.6e-16  Score=117.64  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceec-cCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVK-KKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      .+.|.|+|++|++|+. .|.+||||++. .     . ..+|+++ .++.||+|||.|.|.+...+ ..|.|+|||+| . 
T Consensus         4 ~~~L~V~V~~A~~l~~-~g~~DPYv~v~-~-----~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d-~~   73 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA-QEKFNTYVTLK-V-----Q-NVKSTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG-LI   73 (131)
T ss_dssp             CEEEEEEEEEEECSSC-GGGCEEEEEEE-E-----T-TEEEECCCEESSSCEEEEEEEEEECCCS-SEEEEEEEECC-SS
T ss_pred             ceEEEEEEEEeECCCC-CCCcCeEEEEE-e-----c-CEEEeEecCCCCCceECCEEEEEEeCCC-CeEEEEEEECC-CC
Confidence            3679999999999864 67799999999 3     2 2344444 47999999999999987422 24999999999 7 


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      +|++||++.|+|+++..
T Consensus        74 ~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           74 WDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             CEEEEEEEEEEGGGSCB
T ss_pred             CCCeEEEEEEEHHHhhh
Confidence            99999999999999854

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.66  E-value=4.4e-16  Score=121.06  Aligned_cols=83  Identities=20%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CCeEEEEEEEcccCccccCCCCCC-ceE---EEeeecccC-CCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCcee
Q psy3954          52 DLGTLRIRIQYTADHILQPHYYED-LCT---QILNSPSVN-PVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVL  126 (268)
Q Consensus        52 ~~~~L~V~v~~~a~~L~~~~~~~d-yv~---~~~~T~~~~-~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~i  126 (268)
                      ..+.|.|+|+ +|++|+ ..+.+| ||+   +..+|++++ +++||+|||+|.|.+......|.|+|||+|  +++|++|
T Consensus        12 ~~~~L~V~V~-~A~~l~-~~g~~DPYV~v~~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d--~~~dd~i   87 (167)
T 2cjs_A           12 ILSLLCVGVK-KAKFDG-AQEKFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG--LIWDTMV   87 (167)
T ss_dssp             CCCEEEEEEE-EEECSS-CGGGCEEEEEEEETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC--SSCCEEE
T ss_pred             ceEEEEEEEE-EEECCC-CCCCCCeEEEEEecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC--CCCCceE
Confidence            3689999999 999886 567889 999   345677765 699999999999999877788999999999  5679999


Q ss_pred             EEEEEecccccc
Q psy3954         127 GKVTIQRSDLHR  138 (268)
Q Consensus       127 G~~~i~l~~l~~  138 (268)
                      |++.++|+++..
T Consensus        88 G~~~i~L~~l~~   99 (167)
T 2cjs_A           88 GTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEGGGSCB
T ss_pred             EEEEEEHHHhcc
Confidence            999999999864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.60  E-value=1.8e-15  Score=140.31  Aligned_cols=99  Identities=22%  Similarity=0.351  Sum_probs=84.8

Q ss_pred             CCeEEEEEceecCCCCC----CCCCCCEEEEEEEecCCcceeeeceeccCC-CCCccceEEEEEccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQV----NGQCDPTAMVTVHYTHNKSDVQKSKVKKKS-HSPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~----~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      .+.|.|+|++|++|+..    .|.+||||+|.+...+....+++|++++++ +||+|||+|.|.+..+++..|.|+|||+
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~  575 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY  575 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEc
Confidence            46789999999999743    567999999999733334567899999987 9999999999999877777799999999


Q ss_pred             CCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954         244 ISG-LNVFLGEVHIPLNNKETSSSW  267 (268)
Q Consensus       244 ~~~-~~~~lG~~~l~l~~~~~~~~~  267 (268)
                      |.. ++++||++.|++.++..|..|
T Consensus       576 D~~~~dd~iG~~~ipl~~L~~G~r~  600 (624)
T 1djx_A          576 DSSSKNDFIGQSTIPWNSLKQGYRH  600 (624)
T ss_dssp             CSSSCCEEEEEEEEEGGGBCCEEEE
T ss_pred             CCCCCCceeEEEEEEHHHcCCCcEE
Confidence            988 999999999999999876544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.60  E-value=3.6e-15  Score=115.88  Aligned_cols=85  Identities=20%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      .+.|.|+|++|++|+ ..|.+||||++. .     . ..+|++++ ++.||+|||.|.|.+...+ ..|.|+|||+| . 
T Consensus        13 ~~~L~V~V~~A~~l~-~~g~~DPYV~v~-~-----~-~~kt~~~~~~t~nP~WnE~f~f~v~~~~-~~L~~~V~D~d-~~   82 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG-AQEKFNTYVTLK-V-----Q-NVESTTIAVRGSQPSWEQDFMFEINRLD-LGLTVEVWNKG-LI   82 (167)
T ss_dssp             CCEEEEEEEEEECSS-CGGGCEEEEEEE-E-----T-TEEEECCCEESSSCEEEEEEEEECCCTT-SEEEEEEEECC-SS
T ss_pred             eEEEEEEEEEEECCC-CCCCCCeEEEEE-e-----c-ceEEEEecCCCCCCCCCCEEEEEeeCCC-CEEEEEEEECC-CC
Confidence            357899999999885 467799999999 3     1 24555554 6999999999999987422 24999999999 7 


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      +|++||++.|+|.++..
T Consensus        83 ~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           83 WDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CCEEEEEEEEEGGGSCB
T ss_pred             CCceEEEEEEEHHHhcc
Confidence            99999999999999854

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.59  E-value=3.2e-15  Score=135.83  Aligned_cols=87  Identities=17%  Similarity=0.145  Sum_probs=75.1

Q ss_pred             CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc-CCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS-LGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~-~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+ |..|.+||||++.+.     ..+.+|+++++++||+|||.|.|.+. ......|.|+|||+|..
T Consensus       393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~-----~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~  467 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFG-----GQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYG  467 (540)
T ss_dssp             EEEEEEEEEEEESCCCSSCSCCCEEEEEEET-----TEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSS
T ss_pred             ccEEEEEEEEccCCCcccCCCcCeEEEEEEC-----CEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCC
Confidence            467999999999997 567889999999997     35699999999999999999999854 23333499999999998


Q ss_pred             -CCeeeEEEEEeCCc
Q psy3954         247 -LNVFLGEVHIPLNN  260 (268)
Q Consensus       247 -~~~~lG~~~l~l~~  260 (268)
                       +|++||++.++|..
T Consensus       468 ~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHS  482 (540)
T ss_dssp             SCCEEEEEEEECCCS
T ss_pred             CCCCEEEEEEEEeeC
Confidence             89999999999873

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.58  E-value=3.7e-15  Score=110.48  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=74.8

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCce--EEEEEEecCCC-
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-  246 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-  246 (268)
                      -|+|.|.+|.+|+   |.+|||+++.+.     ..+++|++++ ++.||+|||.|+|++..+....  |.|.|+|++++ 
T Consensus        22 sL~V~l~~a~~Lp---g~~Dp~akv~FR-----g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           22 ALIVHLKTVSELR---GRADRIAKVTFR-----GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             EEEEEEEEEESCC---SCEEEEEEEEET-----TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             EEEEEEEEecCCC---CCCCCeEEEEEe-----ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            4789999999998   578999999995     7889999998 6999999999999998744433  99999999999 


Q ss_pred             CCeeeEEEEEeCCccCC
Q psy3954         247 LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~  263 (268)
                      ++++||++.++|.++..
T Consensus        94 ~nrlIG~~~i~Lq~lv~  110 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVE  110 (144)
T ss_dssp             CCEEEEEEEEESHHHHH
T ss_pred             CCCEEEEEEEEhHHhcc
Confidence            99999999999977643

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.57  E-value=1.7e-16  Score=143.43  Aligned_cols=115  Identities=20%  Similarity=0.298  Sum_probs=20.6

Q ss_pred             cCCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCC---CCCccCcEEEEEecCCCcEEEEEEEeC-CC
Q psy3954          50 IQDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPV---TSPFFGEEFQFDIPRRFRHLAVYAYDR-DR  118 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t---~nP~wne~f~f~v~~~~~~l~~~v~d~-d~  118 (268)
                      .+..+.|.|+|+ +|++|+..   .| ||+      ...||+++++|   +||+|||+|.|.+.+....|.|+|||. |.
T Consensus         7 ~r~~~~L~V~Vi-eAk~L~~~---ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            7 RRVDNVLKLWII-EARELPPK---KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEEEECC-------------------------------------------------CCEECC------------------
T ss_pred             ceeccEEEEEEE-EcCCcCCC---CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            344678999999 99999822   27 888      36799999999   999999999998655468999999994 41


Q ss_pred             --CCCCCceeEEEEEeccccccccCccceecCcccCC----------------------CcccceEEEEEEEEc
Q psy3954         119 --TSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ----------------------DSEVQGKIQIGVLST  168 (268)
Q Consensus       119 --~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~----------------------~~~~~G~i~v~l~~~  168 (268)
                        ..++|++||++.|+++++..+...+.|++|.....                      .....|.|++++.|.
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~  156 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ  156 (483)
T ss_dssp             ------------------------CCEECC--------------------------------------CEEEEE
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence              25789999999999999987778899999954332                      112458888888875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.55  E-value=1.2e-14  Score=132.52  Aligned_cols=90  Identities=24%  Similarity=0.270  Sum_probs=79.9

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .+.|.|+|++|++|+  +..|.+||||++.+.     ..+++|+++++++||.|||+|.|.+.......|.|+|||+|.+
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~-----~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMG-----SQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF  460 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEEC-----CeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence            678999999999996  567889999999996     5678999999999999999999998765555599999999998


Q ss_pred             -CCeeeEEEEEeCCccCC
Q psy3954         247 -LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~  263 (268)
                       ++++||++.++++++..
T Consensus       461 ~~~d~lG~~~~~l~~l~~  478 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRT  478 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHH
T ss_pred             CCCCceEEEEEEHHHhcc
Confidence             89999999999988754

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.55  E-value=7.4e-15  Score=137.51  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=87.5

Q ss_pred             CCCeEEEEEEEcccCcccc-----CCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEe
Q psy3954          51 QDLGTLRIRIQYTADHILQ-----PHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYD  115 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~~-----~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d  115 (268)
                      ...+.|.|+|+ +|++|+.     ..|.+| ||+        .++||+++++++||+|||+|.|.+... ...|.|+|||
T Consensus        15 ~~~g~L~V~Vi-~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           15 QYSHKFTVVVL-RATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCEEEEEEEE-EEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCccEEEEEEE-EEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            34689999999 9999984     467899 999        478999999999999999999999874 7899999999


Q ss_pred             CCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954         116 RDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus       116 ~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      +| .++ |++||++.+++.++..+...+.|++|.+.
T Consensus        94 ~D-~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           94 AN-YVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CC-SSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CC-CCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99 788 99999999999999877778899999764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.53  E-value=3e-14  Score=133.97  Aligned_cols=109  Identities=27%  Similarity=0.328  Sum_probs=96.4

Q ss_pred             cccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ....|.|.+++.+..+.|.|.|++|++|+  +..|.+||||++.+..++....+++|+++++++||.|||.|.|.+...+
T Consensus       157 ~~~~g~i~~~~~~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~  236 (674)
T 3pfq_A          157 TERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD  236 (674)
T ss_dssp             SCCSCEEEEEEEECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT
T ss_pred             ccccccccccceeccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCC
Confidence            34579999999999999999999999996  6678899999999986655567889999999999999999999987766


Q ss_pred             Cce-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         233 PIE-LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       233 ~~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      ... |.|+|||+|.. ++++||++.++++++..
T Consensus       237 ~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~  269 (674)
T 3pfq_A          237 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK  269 (674)
T ss_dssp             TTCEEEEEEEECCSSSCCEECCBCCCBTTHHHH
T ss_pred             ccceeeeEEeecccccccccccccccchhhhcc
Confidence            655 99999999999 99999999999987744

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.50  E-value=4.5e-14  Score=132.26  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=81.4

Q ss_pred             CCeEEEEEceecCCCC-----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~-----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      .+.|.|.|++|++|+.     ..|.+||||++++..  ....+++|+++++++||+|||+|.|.+.......|.|+|||+
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~--~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTT--STTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEec--CCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            4678999999999976     367899999999872  223678999999999999999999998765555599999999


Q ss_pred             CCCCCeeeEEEEEeCCccCCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~~  265 (268)
                      |.+++++||++.+++.++..+.
T Consensus        95 D~~~ddfIG~v~I~L~~L~~g~  116 (749)
T 1cjy_A           95 NYVMDETLGTATFTVSSMKVGE  116 (749)
T ss_dssp             CSSSCEEEEEECCBSTTSCTTC
T ss_pred             CCCCCceeEEEEEEHHHcCCCC
Confidence            8877999999999999987653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.43  E-value=3.6e-13  Score=128.04  Aligned_cols=138  Identities=12%  Similarity=0.213  Sum_probs=102.4

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccccccc----------CCCeEEEEEEEcccCccccCCCCCC-ceE-------
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQII----------QDLGTLRIRIQYTADHILQPHYYED-LCT-------   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~----------~~~~~L~V~v~~~a~~L~~~~~~~d-yv~-------   78 (268)
                      -.++|++.|..+.-   ..|.++|.........+          .....|.|+|+ +|++|++  ..+| ||+       
T Consensus       681 ~m~lN~g~F~~nG~---cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi-saq~L~~--~~~DPYV~V~l~g~p  754 (885)
T 3ohm_B          681 AMQLNAGVFEYNGR---SGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVI-SGQFLSD--RKVGIYVEVDMFGLP  754 (885)
T ss_dssp             HHHHHHHHHTTGGG---CSEEECCGGGTCTTCCCCTTCSSCCTTCCCEEEEEEEE-EEESCCS--SCCCEEEEEEEESST
T ss_pred             ccchhhhhhccCCc---eeeeecCHHHcCCCcCcCCCcCcccCcccceEEEEEEE-EeccCcc--cCCCcEEEEEEeCCC
Confidence            45678888876543   28999998776543221          12347999999 9999984  2578 998       


Q ss_pred             ----EEeeecccCC-CCCCccCc-EEEEE-ecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          79 ----QILNSPSVNP-VTSPFFGE-EFQFD-IPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        79 ----~~~~T~~~~~-t~nP~wne-~f~f~-v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                          .++||+++++ ++||+||| +|.|. +... ...|+|+|||+|     |++||++.+||..|..+   -++++|..
T Consensus       755 ~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d-----ddfiG~~~lpL~~L~~G---yR~vpL~~  826 (885)
T 3ohm_B          755 VDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG-----GKFVGHRILPVSAIRSG---YHYVCLRN  826 (885)
T ss_dssp             TTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT-----TEEEEEEEEETTTCCCE---EEEEEEEC
T ss_pred             cccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC-----ccEEeeEEEEHHHcCCC---ceEEEecC
Confidence                1468999986 59999999 69998 6544 568999999987     78999999999998743   34577765


Q ss_pred             cCCCcccceEEEEEEEEc
Q psy3954         151 VTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       151 ~~~~~~~~G~i~v~l~~~  168 (268)
                      .....-..|.|.+.+.+.
T Consensus       827 ~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          827 EANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             TTSCEEEEEEEEEEEEEE
T ss_pred             CCCCccCceEEEEEEEEE
Confidence            544433467787777654

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.42  E-value=6e-13  Score=125.88  Aligned_cols=137  Identities=12%  Similarity=0.223  Sum_probs=99.8

Q ss_pred             eeeccccccceEEEeeeeeeccCccccccccccc----------CCCeEEEEEEEcccCccccCCCCCC-ceE-------
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQII----------QDLGTLRIRIQYTADHILQPHYYED-LCT-------   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~----------~~~~~L~V~v~~~a~~L~~~~~~~d-yv~-------   78 (268)
                      -.++|++.|..+.-   ..|.++|.........+          ...+.|.|+|+ +|++|++.  .+| ||+       
T Consensus       606 ~m~LN~g~F~~nG~---cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi-saq~L~~~--~~DPYV~V~l~g~p  679 (816)
T 3qr0_A          606 AMCVNLGVFEYNGC---SGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKII-SAQFLSDK--QISSYVEVEMYGLP  679 (816)
T ss_dssp             HHHHHHHHTTTTTT---CSEEECCHHHHCTTCCCCTTCCSCCTTSCCEEEEEEEE-EEECCCSS--CCCEEEEEEEESSG
T ss_pred             hhhhhhhhhccCCc---eeeeecChHhcCCCcccCCCCCCCcCCccceEEEEEEE-EcccCCCC--CCCCeEEEEEeCCC
Confidence            45688888875443   38999998665432211          12368999999 99999842  578 998       


Q ss_pred             -----EEeeecccCC-CCCCccCcE-EEEE-ecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          79 -----QILNSPSVNP-VTSPFFGEE-FQFD-IPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        79 -----~~~~T~~~~~-t~nP~wne~-f~f~-v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                           .++||+++++ ++||+|||+ |.|. +... -..|+|+|||++     |++||++.+||..|..+   -++++|.
T Consensus       680 ~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d-----ddfiG~~~ipL~~L~~G---yR~vpL~  751 (816)
T 3qr0_A          680 TDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN-----GKFIGHRVMPLDGIKPG---YRHVPLR  751 (816)
T ss_dssp             GGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT-----SCEEEEEEEESTTCCCE---EEEEEEE
T ss_pred             cccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC-----CCeeeEEEEEHHHcCCc---ceEEEEe
Confidence                 2568999986 599999998 9998 7655 478999999986     67999999999998753   3467776


Q ss_pred             ccCCCcccceEEEEEEEE
Q psy3954         150 PVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       150 ~~~~~~~~~G~i~v~l~~  167 (268)
                      ......-..+.|.+.+.+
T Consensus       752 ~~~g~~~~~atLfv~i~~  769 (816)
T 3qr0_A          752 NESNRPLGLASVFAHIVA  769 (816)
T ss_dssp             CTTSCEEEEEEEEEEEEE
T ss_pred             CCCCCCCCceEEEEEEEE
Confidence            554333334666666544

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.40  E-value=7.8e-13  Score=125.52  Aligned_cols=137  Identities=16%  Similarity=0.165  Sum_probs=101.1

Q ss_pred             eeeccccccceEEEeeeeeeccCcccccccccc----------cCCCeEEEEEEEcccCccccCCCCCC-ceE-------
Q psy3954          17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQI----------IQDLGTLRIRIQYTADHILQPHYYED-LCT-------   78 (268)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~----------~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~-------   78 (268)
                      ..++|++.|..+.-+   .|.++|.........          ....+.|.|+|+ +|++|++  +.+| ||+       
T Consensus       634 ~m~ln~g~F~~nG~c---GYVlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi-sa~~L~~--~~~DPYV~V~l~g~p  707 (799)
T 2zkm_X          634 PMQQNMAVFEFNGQS---GYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVI-SGQFLSE--RSVRTYVEVELFGLP  707 (799)
T ss_dssp             HHHHHHHHTTTGGGC---SEEECCGGGTCTTSCCCTTSCCTTTTTTCEEEEEEEE-EEESCCS--SCCCEEEEEEEECCT
T ss_pred             HHHHHHhhhhccCCC---CceECCHHHhCCCccCCCcccccccceeeeeEEEEEE-eccccCc--cCCCcEEEEEEEecC
Confidence            457888988754432   899999976543221          123578999999 9999984  4688 999       


Q ss_pred             ----EEeeec-ccCC-CCCCccCc-EEEE-EecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          79 ----QILNSP-SVNP-VTSPFFGE-EFQF-DIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        79 ----~~~~T~-~~~~-t~nP~wne-~f~f-~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                          .++||+ ++++ ++||+||| +|.| .+... -..|+|.|||+|     +++||++.+|+..+..+   -+|++|.
T Consensus       708 ~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d-----~d~iG~~~ipl~~L~~G---~r~v~L~  779 (799)
T 2zkm_X          708 GDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG-----NKFLGHRIIPINALNSG---YHHLCLH  779 (799)
T ss_dssp             TSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT-----TEEEEEEEEEGGGBCCE---EEEEEEE
T ss_pred             CCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC-----CCccceEeeehhhcCCC---cEEEecc
Confidence                146899 7765 69999999 6999 77655 468999999987     68999999999999743   3577776


Q ss_pred             ccCCCcccceEEEEEEEE
Q psy3954         150 PVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       150 ~~~~~~~~~G~i~v~l~~  167 (268)
                      ......-..+.|.+.+.+
T Consensus       780 ~~~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          780 SESNMPLTMPALFIFLEM  797 (799)
T ss_dssp             CTTCCEEEEEEEEEEEEE
T ss_pred             CCCCCCCCceEEEEEEEE
Confidence            544332335777776654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.35  E-value=8.3e-13  Score=124.17  Aligned_cols=95  Identities=20%  Similarity=0.430  Sum_probs=83.4

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d  117 (268)
                      .+.|.|+|+ +|++|+  +.+|.+| ||+          .+.+|+++++|+||.|||+|.|.+...  ...|.|+|||+|
T Consensus       171 ~~~L~V~v~-~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          171 REVLIVVVR-DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             SSEEEEEEE-EEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             cceeeeeee-cccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            467999999 999998  8889999 998          367999999999999999999998765  567999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                       ..++|++||.+.+++.++... ..+.|+.|..
T Consensus       250 -~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls  280 (674)
T 3pfq_A          250 -LTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  280 (674)
T ss_dssp             -SSSCCEECCBCCCBTTHHHHC-CEEEEEECBC
T ss_pred             -cccccccccccccchhhhccC-Ccccceeecc
Confidence             889999999999999998754 3588988754

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.33  E-value=2.9e-12  Score=121.23  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcc--eeeeceeccC-CCCCccceE-EEEE-ccCCCCceEEEEEEecC
Q psy3954         170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKS--DVQKSKVKKK-SHSPVFNES-FMFD-RSLGDPIELVVSLHHDI  244 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~--~~~kT~v~~~-t~nP~~ne~-f~f~-v~~~~~~~l~i~V~d~~  244 (268)
                      +.|.|+|++|++|++.  .+||||+|.+...+...  .+++|+++++ ++||+|||. |.|. +..+++..|.|+|||++
T Consensus       650 ~~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d  727 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK--QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN  727 (816)
T ss_dssp             EEEEEEEEEEECCCSS--CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred             eEEEEEEEEcccCCCC--CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC
Confidence            5689999999999853  58999999998322222  5789999885 699999998 9998 87777777999999983


Q ss_pred             CCCCeeeEEEEEeCCccCCCCC
Q psy3954         245 SGLNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       245 ~~~~~~lG~~~l~l~~~~~~~~  266 (268)
                         +++||++.+||+++..|-.
T Consensus       728 ---ddfiG~~~ipL~~L~~GyR  746 (816)
T 3qr0_A          728 ---GKFIGHRVMPLDGIKPGYR  746 (816)
T ss_dssp             ---SCEEEEEEEESTTCCCEEE
T ss_pred             ---CCeeeEEEEEHHHcCCcce
Confidence               8999999999999987643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.32  E-value=2.9e-12  Score=121.60  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=76.6

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCc-ceeeece-ecc-CCCCCccce-EEEE-EccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK-SDVQKSK-VKK-KSHSPVFNE-SFMF-DRSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-~~~~kT~-v~~-~t~nP~~ne-~f~f-~v~~~~~~~l~i~V~d~  243 (268)
                      .+.|.|.|++|++|++  +.+||||+|.+...+.. ..+++|+ +++ +++||+||| +|.| .+..+++..|.|.|||+
T Consensus       677 ~~~L~V~Visa~~L~~--~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~  754 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE--RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE  754 (799)
T ss_dssp             CEEEEEEEEEEESCCS--SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             eeeEEEEEEeccccCc--cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEe
Confidence            3468999999999985  46899999999732322 2367899 776 469999999 7999 88877777899999998


Q ss_pred             CCCCCeeeEEEEEeCCccCCCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~~~  266 (268)
                      +   +++||++.||++++..|..
T Consensus       755 d---~d~iG~~~ipl~~L~~G~r  774 (799)
T 2zkm_X          755 G---NKFLGHRIIPINALNSGYH  774 (799)
T ss_dssp             T---TEEEEEEEEEGGGBCCEEE
T ss_pred             C---CCccceEeeehhhcCCCcE
Confidence            5   8999999999999987644

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.30  E-value=5e-12  Score=120.30  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=75.0

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCCc-ceeeeceeccC-CCCCccce-EEEEE-ccCCCCceEEEEEEecCCC
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKK-SHSPVFNE-SFMFD-RSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~-t~nP~~ne-~f~f~-v~~~~~~~l~i~V~d~~~~  246 (268)
                      .|.|+|++|++|++.  .+||||+|.+...+.. ..+++|+++++ ++||+||| +|.|. +..+++..|.|+|||++  
T Consensus       726 ~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d--  801 (885)
T 3ohm_B          726 ALRVKVISGQFLSDR--KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG--  801 (885)
T ss_dssp             EEEEEEEEEESCCSS--CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT--
T ss_pred             EEEEEEEEeccCccc--CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC--
Confidence            689999999999853  5899999999732222 23579999876 59999999 69998 77777777999999985  


Q ss_pred             CCeeeEEEEEeCCccCCCC
Q psy3954         247 LNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~~~~  265 (268)
                       +++||++.|||+++..|-
T Consensus       802 -ddfiG~~~lpL~~L~~Gy  819 (885)
T 3ohm_B          802 -GKFVGHRILPVSAIRSGY  819 (885)
T ss_dssp             -TEEEEEEEEETTTCCCEE
T ss_pred             -ccEEeeEEEEHHHcCCCc
Confidence             899999999999998764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.21  E-value=1e-12  Score=118.69  Aligned_cols=88  Identities=17%  Similarity=0.176  Sum_probs=8.4

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCC---CCCccceEEEEEccCCCCceEEEEEEec-C
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKS---HSPVFNESFMFDRSLGDPIELVVSLHHD-I  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~~ne~f~f~v~~~~~~~l~i~V~d~-~  244 (268)
                      .+.|.|+|++|++|+..+   ||||++++. +   ....||++++++   +||.|||+|.|.+... ...|.|+|||. +
T Consensus        10 ~~~L~V~VieAk~L~~~d---dpYv~v~l~-~---~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d   81 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK---RYYCELCLD-D---MLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSD   81 (483)
T ss_dssp             EECC----------------------------------------------------CCEECC------------------
T ss_pred             ccEEEEEEEEcCCcCCCC---CCeEEEEEC-C---eEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCC
Confidence            367899999999998544   999999996 1   235699999999   9999999999986432 44599999994 5


Q ss_pred             C---C-CCeeeEEEEEeCCccCCC
Q psy3954         245 S---G-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       245 ~---~-~~~~lG~~~l~l~~~~~~  264 (268)
                      .   . ++++||++.|+++++..+
T Consensus        82 ~~~~~~~d~~lG~v~i~l~~l~~~  105 (483)
T 3bxj_A           82 KKRKKDKAGYVGLVTVPVATLAGR  105 (483)
T ss_dssp             ------------------------
T ss_pred             ccccCCCCceEEEEEEEHHHhcCC
Confidence            2   4 899999999999998764

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.21  E-value=2.5e-10  Score=82.13  Aligned_cols=102  Identities=20%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             CeEEEEEEEcccCc--cccCCCCCC-ceE----EE-----eee-cccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCC
Q psy3954          53 LGTLRIRIQYTADH--ILQPHYYED-LCT----QI-----LNS-PSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRT  119 (268)
Q Consensus        53 ~~~L~V~v~~~a~~--L~~~~~~~d-yv~----~~-----~~T-~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~  119 (268)
                      ...|+|.+. ++.-  |+......| ||.    +.     .+| .++++|..|+|||+|.-.+.+. +.|.+.|++.. .
T Consensus         5 ~~flRi~~~-~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~a-~   81 (126)
T 1yrk_A            5 APFLRIAFN-SYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA-E   81 (126)
T ss_dssp             CCEEEEEEE-EEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEEEEET-T
T ss_pred             CccEEeeec-cccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEEEcCC-C
Confidence            457888886 5542  333334678 998    22     266 7888899999999999988877 99999999777 3


Q ss_pred             CCCCceeEEEEEecccccc-----ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         120 SKTDRVLGKVTIQRSDLHR-----ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       120 ~~~d~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                          ++++.+.+++++|..     +...+.|++|+|       .|+|++.+.|.
T Consensus        82 ----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF  124 (126)
T ss_dssp             ----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence                799999999999983     234678999988       69999998774

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=84.01  Aligned_cols=104  Identities=17%  Similarity=0.261  Sum_probs=82.2

Q ss_pred             CCCeEEEEEEEcccCccc--c-CCCCCC-ceE----E--E---eee-cccCCCCCCccCcEEEEEecCCCcEEEEEEEeC
Q psy3954          51 QDLGTLRIRIQYTADHIL--Q-PHYYED-LCT----Q--I---LNS-PSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR  116 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~----~--~---~~T-~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~  116 (268)
                      +....|+|.+. ++.--+  + .....| ||.    +  .   .+| .++++|..|+|||+|.-.+.+. +.|.|.|++.
T Consensus         7 ~m~~flRi~l~-~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~Vfh~   84 (138)
T 2enj_A            7 GMSPFLRIGLS-NFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIVKGK   84 (138)
T ss_dssp             SCCCCEEEEEE-EEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEEECS
T ss_pred             ccCcceEEEee-ccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEEEcC
Confidence            33567889887 665433  2 345678 998    2  2   777 7788899999999999887777 9999999976


Q ss_pred             CCCCCCCceeEEEEEecccccc-----ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHR-----ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      . .    +|++.+.+++++|..     ....+.|++|+|       .|+|++.+.|.
T Consensus        85 a-~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~  129 (138)
T 2enj_A           85 N-V----DLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYF  129 (138)
T ss_dssp             S-C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEEC
T ss_pred             C-C----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEE
Confidence            6 2    799999999999983     345688999988       69999998875

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.18  E-value=2.3e-05  Score=56.33  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             eEEEEEceec--CCCCCCCCCCCEEEEEEEecCCcceeeec-eeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCC
Q psy3954         171 SLMVNVNEAS--GLTQVNGQCDPTAMVTVHYTHNKSDVQKS-KVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGL  247 (268)
Q Consensus       171 ~L~v~v~~a~--~L~~~~g~~dpyv~v~l~~~~~~~~~~kT-~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~  247 (268)
                      .|+|.+.++.  .|+......|||+.|.+..... ....+| ..+++|..|.|||.|.-.+...  ..|.|.|++...  
T Consensus         7 flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~-~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G--r~l~i~Vfh~a~--   81 (126)
T 1yrk_A            7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS-TERGKTLVQKKPTMYPEWKSTFDAHIYEG--RVIQIVLMRAAE--   81 (126)
T ss_dssp             EEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE-ETTEEEEECCSCCBCCCTTCEEEEECCTT--CEEEEEEEEETT--
T ss_pred             cEEeeeccccccccCCccccCCceEEEEeeeeEE-cccceeecccCCCCCcCccceEEeeeeCC--EEEEEEEEcCCC--
Confidence            4556554443  4443334589999999872211 112354 7788899999999998877432  349999997633  


Q ss_pred             CeeeEEEEEeCCccC
Q psy3954         248 NVFLGEVHIPLNNKE  262 (268)
Q Consensus       248 ~~~lG~~~l~l~~~~  262 (268)
                       +++..|.+++.++.
T Consensus        82 -~fvAn~tV~~edL~   95 (126)
T 1yrk_A           82 -EPVSEVTVGVSVLA   95 (126)
T ss_dssp             -EEEEEEEEEHHHHH
T ss_pred             -CeeeEEEEEHHHHH
Confidence             99999999988764

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.93  E-value=4.9e-05  Score=55.39  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             eEEEEEceecC--CCC-CCCCCCCEEEEEEEecCCcceeeec-eeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         171 SLMVNVNEASG--LTQ-VNGQCDPTAMVTVHYTHNKSDVQKS-KVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       171 ~L~v~v~~a~~--L~~-~~g~~dpyv~v~l~~~~~~~~~~kT-~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .|+|.+.++.-  |+. .....||||.|.+.... .....+| ..+++|..|.|||.|.-.+..  -..|.|.|++... 
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-   86 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV-   86 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEeeeee-eccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence            45555544442  332 23358999999987221 1123566 777789999999998876643  2339999996533 


Q ss_pred             CCeeeEEEEEeCCccC
Q psy3954         247 LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~~  262 (268)
                        +++..|.|++.++.
T Consensus        87 --~fVAn~tV~~edL~  100 (138)
T 2enj_A           87 --DLISETTVELYSLA  100 (138)
T ss_dssp             --SCCEEEEEESHHHH
T ss_pred             --CeeeEEEEEHHHHH
Confidence              89999999998774

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.12  E-value=0.058  Score=40.36  Aligned_cols=114  Identities=13%  Similarity=0.081  Sum_probs=78.7

Q ss_pred             cCCCeEEEEEEEcccCccc---c-CCCCCC--ceE------EEeeecccCCCCCCccCcEEEEEecCC--------CcEE
Q psy3954          50 IQDLGTLRIRIQYTADHIL---Q-PHYYED--LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHL  109 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~---~-~~~~~d--yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l  109 (268)
                      -++.+.+.|.|. ++.--+   . ......  ||.      +.+-|.++. ..+|.+|-+-+|.|...        ...|
T Consensus        14 ~~gEnlfEihi~-~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHIN-KVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEE-EECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEe-EEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence            355788999999 887444   1 112223  888      666777666 78999999999998766        4589


Q ss_pred             EEEEEeCCCCCCCCceeEEEEEeccccccccC-ccceecCcccCCCcccceEEEEEEEE
Q psy3954         110 AVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN-KEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       110 ~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      .+++....  .+.-..||++.|++.++...++ ...-.+|..........|.|.+.+++
T Consensus        92 ~lELhqa~--g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL  148 (156)
T 2yrb_A           92 TLEVHQAY--STEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRL  148 (156)
T ss_dssp             EEEEEEEC--SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred             EEEEEEee--CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEE
Confidence            99998876  2345689999999999875443 33344555443322457888887765

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.55  E-value=0.052  Score=52.93  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=67.6

Q ss_pred             CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEec
Q psy3954         169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~  243 (268)
                      ...+.|+|..+.++. +.....+.||.+.+..|+... ....|+.+. ..+|.|||.+.|++...++..   |.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            778999999999886 333357899999999766643 344555444 457889999999987766655   99999985


Q ss_pred             CCC-----CCeeeEEEEEeCCccC
Q psy3954         244 ISG-----LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       244 ~~~-----~~~~lG~~~l~l~~~~  262 (268)
                      ...     .+..||.+.++|-+..
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCTT
T ss_pred             cCccCcccccceeEEeeeeeEccC
Confidence            432     2457999999886543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.38  E-value=0.062  Score=51.89  Aligned_cols=93  Identities=12%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      ...+.|.|..+.++... ...+-||.+.+..|+.. .....|..+....+|.|||.+.|++...++..   |.|+||+..
T Consensus       216 ~~~f~i~i~~~~~~~~~-~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~  294 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD-ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV  294 (940)
T ss_dssp             CSEEEEEEEEEECCCC----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred             CCceEEEEEEecccCCC-CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence            78999999999998633 34789999999866553 23455666665778999999999987766655   999999952


Q ss_pred             C-----------C--CCeeeEEEEEeCCccC
Q psy3954         245 S-----------G--LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       245 ~-----------~--~~~~lG~~~l~l~~~~  262 (268)
                      .           .  ....||.+.+++-+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          295 EKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             ----------------CEEEEEEEEESBCTT
T ss_pred             CCccCccccccccccccceEEEEeeeEECCc
Confidence            1           1  2469999999886643

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.10  E-value=0.094  Score=41.54  Aligned_cols=56  Identities=16%  Similarity=0.184  Sum_probs=43.5

Q ss_pred             EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC---CCceeEEEEEecc
Q psy3954          79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK---TDRVLGKVTIQRS  134 (268)
Q Consensus        79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~---~d~~iG~~~i~l~  134 (268)
                      ..++|.+...+.+|.|+|++.+.++.+   ...|.|++++..-..+   .+..+|.+-+||-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            466888999999999999999999988   6889999998761111   2346787777765

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.88  E-value=0.51  Score=37.30  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-----CCeeeEEEEEeCCcc
Q psy3954         204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-----LNVFLGEVHIPLNNK  261 (268)
Q Consensus       204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-----~~~~lG~~~l~l~~~  261 (268)
                      ...++|.+...+.+|.|+|++-..++.+....  |.|++++....     ....+|-+.+||-.-
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            45688999999999999999999999887766  99999875432     235899999998654

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=94.03  E-value=0.064  Score=52.50  Aligned_cols=98  Identities=9%  Similarity=0.063  Sum_probs=68.3

Q ss_pred             EEEEEcCCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEE
Q psy3954         163 IGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVV  238 (268)
Q Consensus       163 v~l~~~~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i  238 (268)
                      +++.-....+.|+|..+.++... ...+-||.+.+..|+... ....|..+....+|.|||.+.|++...++..   |.|
T Consensus       346 ~s~~~~~~~f~i~i~~~~~~~~~-~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~  424 (1092)
T 2y3a_A          346 SHIWDNNNPFQITLVKGNKLNTE-ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCF  424 (1092)
T ss_dssp             --CCCCCSEEEEEECCCCCCCCC-SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEE
T ss_pred             eehhhcCCCEEEEEEEeccCCCC-CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEE
Confidence            33333388999999999998633 357899999888665532 3455666666778999999999988777765   999


Q ss_pred             EEEecCCC-----------------------CCeeeEEEEEeCCcc
Q psy3954         239 SLHHDISG-----------------------LNVFLGEVHIPLNNK  261 (268)
Q Consensus       239 ~V~d~~~~-----------------------~~~~lG~~~l~l~~~  261 (268)
                      +||+....                       ....||.+.+++-+.
T Consensus       425 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          425 AVYAVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             ECCCC------------------------------CCEEEEESBCT
T ss_pred             EEEEecCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            99985311                       124888888887654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.62  E-value=0.25  Score=47.73  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             CCCeEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEE
Q psy3954          51 QDLGTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAY  114 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~  114 (268)
                      .....+.|+|. ++.++. ....++ ||.           ....|+.+.-..+|.|||...|++.-.    ...|.|.||
T Consensus       214 ~~~~~f~i~i~-~~~~~~-~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          214 SLEQPFSIELI-EGRKVN-ADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             TCCSEEEEEEE-EEECCC-C---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             hcCCceEEEEE-EecccC-CCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            44578999999 999997 223456 877           234455555567899999999985443    689999999


Q ss_pred             eCCCC--C---------CCCceeEEEEEeccccc
Q psy3954         115 DRDRT--S---------KTDRVLGKVTIQRSDLH  137 (268)
Q Consensus       115 d~d~~--~---------~~d~~iG~~~i~l~~l~  137 (268)
                      +....  .         ..+..||-+.+++-+-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            97511  1         02347888888776543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=92.42  E-value=0.37  Score=47.10  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             CeEEEEEEEcccCccc-cCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEe
Q psy3954          53 LGTLRIRIQYTADHIL-QPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYD  115 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~-~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d  115 (268)
                      ...++|+|. ++.++. +.....+ ||.           ...+|+.+. ..+|.|||...|++.-.    ...|.|.||+
T Consensus       354 ~~~f~v~i~-~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKIL-CATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEE-EESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEE-EecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            467899999 999888 4444566 887           344455444 45788999999985443    6899999999


Q ss_pred             CCCCC---CCCceeEEEEEeccccc
Q psy3954         116 RDRTS---KTDRVLGKVTIQRSDLH  137 (268)
Q Consensus       116 ~d~~~---~~d~~iG~~~i~l~~l~  137 (268)
                      .....   .....||-+.++|-+-.
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTT
T ss_pred             ecCccCcccccceeEEeeeeeEccC
Confidence            76211   12357899999877654

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=90.76  E-value=0.44  Score=46.72  Aligned_cols=65  Identities=12%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEE
Q psy3954          51 QDLGTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAY  114 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~  114 (268)
                      .....++|+|. ++.++. .....+ ||.           ...+|+.+.-..+|.|||...|.+.-.    ...|.|.||
T Consensus       350 ~~~~~f~i~i~-~~~~~~-~~~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          350 DNNNPFQITLV-KGNKLN-TEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CCCSEEEEEEC-CCCCCC-CCSSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             hcCCCEEEEEE-EeccCC-CCCCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            33568999999 999997 224567 777           334455555567899999999985544    689999999


Q ss_pred             eCC
Q psy3954         115 DRD  117 (268)
Q Consensus       115 d~d  117 (268)
                      +..
T Consensus       428 ~~~  430 (1092)
T 2y3a_A          428 AVL  430 (1092)
T ss_dssp             CC-
T ss_pred             Eec
Confidence            863

>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A

Probab=82.07  E-value=2.8  Score=30.98  Aligned_cols=91  Identities=16%  Similarity=0.190  Sum_probs=55.7

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCc--ceeeeceec--cCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK--SDVQKSKVK--KKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI  244 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~--~~~~kT~v~--~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~  244 (268)
                      |.|.|.+. +|.+.....|||+.|++....+.  ...+.|.+.  +....-.||.....+-+.+.+..   |.|++.++.
T Consensus        16 l~v~Ie~i-glkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~G~aivfElkH~k   94 (152)
T 2qzq_A           16 LTLTIEKI-GLKDAGQCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPKGAAIFFEFKHYK   94 (152)
T ss_dssp             EEEEEEEE-ECTTGGGCEEEEEEEEEECTTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCTTCEEEEEEEEEE
T ss_pred             EEEEEEEE-EeCCHHHccCCeEEEEEEcCCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCCCcEEEEEEEEec
Confidence            44555544 67766667899999999854442  345666655  22223346665555555555544   888888875


Q ss_pred             CCC--CeeeEEEEEeCCccCC
Q psy3954         245 SGL--NVFLGEVHIPLNNKET  263 (268)
Q Consensus       245 ~~~--~~~lG~~~l~l~~~~~  263 (268)
                      ..+  -...+.+.+.++++..
T Consensus        95 ~kkkk~S~kCw~f~~~d~i~~  115 (152)
T 2qzq_A           95 PKKRFTSTKCFAFMEMDEIKP  115 (152)
T ss_dssp             TTTTEEEEEEEEEEEGGGCCS
T ss_pred             ccceeeeeeeEEEEEhhhccc
Confidence            542  2355667777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-13
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-04
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-13
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-06
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-05
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	8e-10
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	8e-04
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-09
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-04
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-09
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-08
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-07
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-07
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-04
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-07
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-07
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	0.002
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-05
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	0.001
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	5e-05
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-05
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	8e-05
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	0.003

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.6 bits (154), Expect = 2e-13
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G++ + +    T+  L V V +A  L  + V+G  DP   V +++   +   +K+ VKK 
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 215 SHSPVFNESFMFD---RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           + + VFNE F+FD    SL +     + L  +    N  +G + +    + +    W
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 91  SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           +  F E F FDIP        +     D +R S+ + V+G++ +  +     S   HW  
Sbjct: 64  NAVFNELFVFDIPCESLEEISVEFLVLDSERGSR-NEVIGRLVLGATAEG--SGGGHWKE 120

Query: 148 L 148
           +
Sbjct: 121 I 121

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (149), Expect = 8e-13
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 156 EVQGKIQIGVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKK 213
           E +G+I I        L+V V +A  L     NG  DP   + +         QK+K  K
Sbjct: 1   ERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60

Query: 214 KSHSPVFNESFMF---DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLN 259
            S +P +NE+F F   +      + + +    D++  N F+G +   ++
Sbjct: 61  CSLNPEWNETFRFQLKESDKDRRLSVEI-WDWDLTSRNDFMGSLSFGIS 108

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 91  SPFFGEEFQFDIPRRF--RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
           +P + E F+F +      R L+V  +D D TS+ +  +G ++   S+L + +  + WF L
Sbjct: 64  NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR-NDFMGSLSFGISELQK-AGVDGWFKL 121

Query: 149 TPV 151
              
Sbjct: 122 LSQ 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G++ I +        L+V +  A  L   +     +P   +      +  + +++K  KK
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 215 SHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLNN 260
           +  P +N++F++            L ++L          + FLGE+ I L  
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 112

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 90  TSPFFGEEFQFDIPRRF----RHLAVYAYDRDRTSKT-DRVLGKVTIQRSDLHRISNKEH 144
             P + + F +    R     R L +  +D+ R  +     LG++ I+        ++ H
Sbjct: 62  LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL-DDEPH 120

Query: 145 WFPL 148
           W+ L
Sbjct: 121 WYKL 124

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 156 EVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKV 211
           E  G I   +   PT+  L V + EA  L    V G  DP   + +     +   +K+ +
Sbjct: 9   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68

Query: 212 KKKSHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETSSSWW 268
           KK + +P +NESF F+       ++ V +    +D  G N  +G+V +  N+       W
Sbjct: 69  KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 8e-10
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQK--SKVKKK 214
           GKI + ++ +     L+V +     L  ++        V +    +     K  +++KKK
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETSSSWW 268
           + +P FNE F +D    D  +  + +    +DI   N ++G   + ++ K      W
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHW 118

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 37  YLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVT-SPFFG 95
           Y   +  L    II+ +    +     +D  ++     D+  +  +   +   T +P F 
Sbjct: 10  YSTQQGGLIVG-IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 68

Query: 96  EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
           EEF +DI       + L +  +D D     D  +G   +  S        +HW+    
Sbjct: 69  EEFFYDIKHSDLAKKSLDISVWDYDIGKSND-YIGGCQLGISAKGE--RLKHWYECLK 123

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQ 207
            ++ E  GK+Q  +     +  L+V + +A+ L    + G  DP   V V    +K    
Sbjct: 14  PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKKKKF 71

Query: 208 KSKVKKKSHSPVFNESFMFD---RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS 264
           ++KV +K+ +PVFNE F F      LG    ++     D    +  +GE  +P+N  +  
Sbjct: 72  ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 91  SPFFGEEFQFDIPRRF---RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
           +P F E+F F +P      + L +  YD DR SK   ++G+  +  + +      E W  
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRD 139

Query: 148 L 148
           L
Sbjct: 140 L 140

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
           G++   +   PT+  L V + +AS L    + G  DP    ++     +   +K+ +KK 
Sbjct: 7   GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66

Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETS 264
           + +P +NE+ +FD +      + +S+    +D  G N  +G   +     +  
Sbjct: 67  TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 169 PTSLMVNVNEASGLTQV----NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH-SPVFNES 223
           P  L V +     L +V    N   DP  +V +H     +  +++ V   +  +P ++  
Sbjct: 3   PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62

Query: 224 FMFDRSL-GDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
           F F+ ++    +   +   +D S  N F+G+  IP N+ +      
Sbjct: 63  FEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHV 108

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V +  A GL         DP   +T      KS+V     +    +P +NE+F+F  S
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNV----AEGMGTTPEWNETFIFTVS 67

Query: 230 LGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSS 266
            G           D+   +  +GE  IPL       S
Sbjct: 68  EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS 104

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 54  GTLRIRIQYTAD-------HILQPHYYEDLCTQILNSPSVNPVTS-PFFGEEFQFDIPRR 105
           GTL + +            + + P+      TQ   S     + + P + E F F +   
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 106 FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN-KEHWFPLTPVTQDSEVQGKIQIG 164
              L    +D+D  ++ D  +G+ TI    +    +     + +    +D E +G+I + 
Sbjct: 70  TTELKAKIFDKDVGTE-DDAVGEATIPLEPVFVEGSIPPTAYNV---VKDEEYKGEIWVA 125

Query: 165 VLSTP 169
           +   P
Sbjct: 126 LSFKP 130

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 50  IQDLGTLRIRIQYTADHILQ-------PHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDI 102
           ++D+G L++++   AD +         P    +L    L + +V    +P + + F F I
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 103 PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162
                 L V  +D D   K    LGKV I    +     + + + L     +   +G I 
Sbjct: 62  KDIHDVLEVTVFDEDG-DKPPDFLGKVAIPLLSIRD--GQPNCYVLKNKDLEQAFKGVIY 118

Query: 163 I 163
           +
Sbjct: 119 L 119

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
           L V V +A+ L     +G+ DP  +         +D  ++    K+ +P +N+ F F   
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCL-----LELGNDRLQTHTVYKNLNPEWNKVFTFPIK 62

Query: 230 LGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
               +  V     D      FLG+V IPL +        
Sbjct: 63  DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNC 101

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLTQVN-GQCDPTAMVTVHYTHNKSDVQK 208
           +  S   G +   +         +VN+ EA GL  ++         + +     K    K
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 209 SKVKKKSHSPVFNESF-MFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNN 260
           ++V +K+  P F+E+F  +        EL +       D    +  +GEV IPL+ 
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 17/120 (14%)

Query: 157 VQGKIQIGVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDV-------- 206
           + G+IQ+ +     +L++++ +A  L     NG  DP   V +     +  V        
Sbjct: 5   ITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 207 -QKSKVKKKSHSPVFNESFMFDRSL-----GDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
            +++K  +KS +P +N++ ++            +E+ V   +D    N FLGEV I L++
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTV-WDYDRFSSNDFLGEVLIDLSS 123

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 58  IRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRF----RHLAVYA 113
           +++                      +  V    +P + +   +          + L V  
Sbjct: 43  VKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTV 102

Query: 114 YDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ 153
           +D DR S  +  LG+V I  S    + N   W+PL   T+
Sbjct: 103 WDYDRFSS-NDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE 141

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF 226
             V V  A+ +T+     +    DP   V +  +      ++++      +PV+NE+F F
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 227 DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
                    L ++L      ++  LG     +++
Sbjct: 63  ILDPNQENVLEITLMDANYVMDETLGTATFTVSS 96

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 98  FQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEV 157
                      + +   +       D  LG  T   S +     KE  F    V   +E+
Sbjct: 63  ILDPNQENVLEITLMDANYVM----DETLGTATFTVSSMKVGEKKEVPFIFNQV---TEM 115

Query: 158 QGKIQIGVLST 168
             ++ + V S+
Sbjct: 116 VLEMSLEVASS 126

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 166 LSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFM 225
           L+  + L + V  A           P+  V V         +K++    ++SP + +   
Sbjct: 2   LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLT 58

Query: 226 FDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
              +    +   V   H     +V LG   + +  
Sbjct: 59  VIVTPVSKLHFRV-WSHQTLKSDVLLGTAALDIYE 92

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 15/91 (16%), Positives = 29/91 (31%)

Query: 174 VNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233
            N  E   L   +    P   V +         +    KK +  P +  +F      G  
Sbjct: 9   FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68

Query: 234 IELVVSLHHDISGLNVFLGEVHIPLNNKETS 264
           I++V+    +     V +G   +    K+ +
Sbjct: 69  IQIVLMRAAEDPMSEVTVGVSVLAERCKKNN 99

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 172 LMVNVNEASGL-------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSP 218
           L + + EA  L                    DP          + S + ++  K+K++SP
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSP 63

Query: 219 VFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
            +++ F+ D   G  IEL V  H    G + F+    I    
Sbjct: 64  AWHDEFVTDVCNGRKIELAV-FHDAPIGYDDFVANCTIQFEE 104

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 90  TSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN--KEHWFP 147
           + P + ++F F+I R    L V  +++      D ++G V I    + + +      W  
Sbjct: 41  SQPSWEQDFMFEINRLDLGLTVEVWNKGLIW--DTMVGTVWIPLRTIRQSNEEGPGEWLT 98

Query: 148 LTP--VTQDSEVQGKIQIGVLSTPTSLMVNV 176
           L    +  DSE+ G        T   ++++ 
Sbjct: 99  LDSQAIMADSEICGT----KDPTFHRILLDA 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.9
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.89
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.89
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.88
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.87
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.87
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.86
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.85
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.85
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.85
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.85
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.85
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.84
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.83
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.82
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.82
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.81
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.81
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.8
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.8
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.8
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.79
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.79
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.78
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.77
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.77
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.76
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.76
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.72
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.7
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.67
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.66
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.66
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.54
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.52
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.41
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	97.21
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.5
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	88.79

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=154.55  Aligned_cols=113  Identities=23%  Similarity=0.352  Sum_probs=100.6

Q ss_pred             CCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC
Q psy3954          51 QDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT  122 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~  122 (268)
                      +..|.|+|+|+ +|++|+  +..|.+| ||+     +.++|+++++|.||.|||+|.|.++...+.|.|+|||++ ..++
T Consensus         3 ~~~G~L~V~v~-~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~-~~~~   80 (126)
T d2ep6a1           3 KDVGILQVKVL-KAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDED-GDKP   80 (126)
T ss_dssp             CCSEEEEEEEE-EEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEE-TTEE
T ss_pred             CccEEEEEEEE-EeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEcc-CCcC
Confidence            45799999999 999999  7788999 999     889999999999999999999999887889999999999 7888


Q ss_pred             CceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         123 DRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       123 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      |++||++.++++++..+  ...|+.|..........|+|++++.+
T Consensus        81 d~~lG~~~i~l~~l~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  123 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDL  123 (126)
T ss_dssp             EEECCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCC--CceEEEccccCCCCceeEEEEEEEEE
Confidence            99999999999998644  35788888776666678999998876

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.3e-23  Score=154.79  Aligned_cols=108  Identities=26%  Similarity=0.310  Sum_probs=95.9

Q ss_pred             cceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954         157 VQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI  234 (268)
Q Consensus       157 ~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~  234 (268)
                      .+|+|.+++.+..+.|.|.|++|+||+  +..|.+||||++++..++....+++|++++++.||+|||.|.|.+......
T Consensus         2 ~rG~i~l~~~~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~   81 (132)
T d1a25a_           2 RRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD   81 (132)
T ss_dssp             TTCEEEEEEEESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGG
T ss_pred             cccEEEEEEEecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccC
Confidence            379999999999999999999999997  567889999999998655556788999999999999999999998765554


Q ss_pred             e-EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         235 E-LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       235 ~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      . |.|+|||++.. ++++||++.|+++++..+
T Consensus        82 ~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~  113 (132)
T d1a25a_          82 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA  113 (132)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC
T ss_pred             CEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC
Confidence            4 99999999998 899999999999998653

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.3e-23  Score=155.91  Aligned_cols=111  Identities=24%  Similarity=0.370  Sum_probs=94.1

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      +|+|++++.|.  .++|.|+|++|+||+  +..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~   80 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence            49999999998  789999999999997  55677999999999866555667899999999999999999999988777


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..  |.|+|||++.+ ++++||++.|++.+...+..||
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW  118 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW  118 (138)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHH
T ss_pred             CccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHH
Confidence            65  99999999988 8999999999998865544433

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5.3e-23  Score=153.74  Aligned_cols=111  Identities=26%  Similarity=0.442  Sum_probs=94.4

Q ss_pred             ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954         158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP  233 (268)
Q Consensus       158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~  233 (268)
                      +|+|.+++.|.  .+.|.|.|++|+||+  +..+.+||||++++..+.....+++|++++++.||+|||.|.|.++..++
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   80 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL   80 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence            49999999998  889999999999997  55678999999999855555667899999999999999999999987776


Q ss_pred             ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954         234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                      ..  |.|+|||++.+ ++++||++.++++++..+..+|
T Consensus        81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W  118 (137)
T d2cm5a1          81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHW  118 (137)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHH
T ss_pred             cccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhh
Confidence            55  99999999988 9999999999998765443333

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.5e-22  Score=154.65  Aligned_cols=109  Identities=25%  Similarity=0.336  Sum_probs=95.9

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      +..|+|.+++.|.  .++|.|.|++|+||+  +..+.+||||++++..++.....++|++++++.||+|||+|.|.++..
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~   88 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence            4579999999998  789999999999997  556779999999998665556678999999999999999999999887


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++..  |.|+|||++.+ ++++||++.|++.+...+
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~  124 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE  124 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHH
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecccCChh
Confidence            7765  99999999999 899999999999876443

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.9e-22  Score=146.61  Aligned_cols=110  Identities=21%  Similarity=0.342  Sum_probs=90.8

Q ss_pred             eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCCC
Q psy3954         159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGDP  233 (268)
Q Consensus       159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~~  233 (268)
                      |+|++++.|.  .++|.|+|++|+||+  +..+.+||||++++.++.....+++|++++++.||+|||+|.|. +...++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            8999999999  889999999999997  55777999999999865556677899999999999999999996 665555


Q ss_pred             ce--EEEEEEecCCC---CCeeeEEEEEeCCccCC-CCCCC
Q psy3954         234 IE--LVVSLHHDISG---LNVFLGEVHIPLNNKET-SSSWW  268 (268)
Q Consensus       234 ~~--l~i~V~d~~~~---~~~~lG~~~l~l~~~~~-~~~~w  268 (268)
                      ..  |.|+|||.+..   ++++||++.|+|+++.. +..+|
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~W  121 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHW  121 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEE
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCEE
Confidence            54  99999999875   56799999999999875 33344

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.4e-22  Score=147.29  Aligned_cols=101  Identities=24%  Similarity=0.317  Sum_probs=88.4

Q ss_pred             cceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         157 VQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       157 ~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ..|+|.+++.|.  .++|.|.|++|+||+  +..|.+||||++++..+  ...+++|++++++.||+|||+|.|.++..+
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~~P~wne~f~f~v~~~~   80 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD--RKKKFQTKVHRKTLNPIFNETFQFSVPLAE   80 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS--TTSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccC--CCceEeceeEcCCCCeeeeeEEEEEEchHH
Confidence            469999999998  889999999999997  56778999999998632  345789999999999999999999988766


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLN  259 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~  259 (268)
                      +..  |.|+|||++.+ ++++||++.|++.
T Consensus        81 ~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~  110 (130)
T d1dqva1          81 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNL  110 (130)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCT
T ss_pred             cCCCeEEEEEEEcCCCCCCceEEEEEECch
Confidence            554  99999999988 8999999999854

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=9.6e-22  Score=147.87  Aligned_cols=114  Identities=19%  Similarity=0.273  Sum_probs=99.8

Q ss_pred             ccccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCC
Q psy3954          22 HATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVT   90 (268)
Q Consensus        22 ~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~   90 (268)
                      .+...+|.++.+++|...             .+.|.|+|+ +|+||+  +..+.+| ||+        ...+|++++++.
T Consensus        15 ~~~~~~G~l~~sl~y~~~-------------~~~L~V~V~-~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~   80 (143)
T d1rsya_          15 KEEEKLGKLQYSLDYDFQ-------------NNQLLVGII-QAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL   80 (143)
T ss_dssp             ---CCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCS
T ss_pred             CchhcceEEEEEEEEeCC-------------CCEEEEEEE-EccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecccc
Confidence            345578999999999877             789999999 999998  7788999 998        457999999999


Q ss_pred             CCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954          91 SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP  150 (268)
Q Consensus        91 nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~  150 (268)
                      ||.|||+|.|.++..   ...|.|+|||.+ ..+++++||++.|+|+++..+...+.|++|+.
T Consensus        81 ~P~wne~f~f~i~~~~l~~~~L~i~V~d~d-~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEECC-SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CcceeeeeEEEEEeeccCCceEEEEEEEcC-CCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            999999999987654   578999999999 78889999999999999988788889999964

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1e-21  Score=147.74  Aligned_cols=107  Identities=27%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      +..|+|++++.|.  .++|.|.|++|+||+  +..|.+||||++++..+  ...+++|++++++.||+|||+|.|.++..
T Consensus        18 ~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~--~~~~~kT~~~~~t~~P~wne~f~f~i~~~   95 (143)
T d1rsya_          18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD--KKKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT--CCSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             hcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCC--CCeeEEEEEeccccCcceeeeeEEEEEee
Confidence            4579999999997  889999999999997  55778999999999733  34568999999999999999999988765


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~  264 (268)
                      ++..  |.|+|||++.. ++++||++.|+|+++..+
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~  131 (143)
T d1rsya_          96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG  131 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCS
T ss_pred             ccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCC
Confidence            5443  99999999988 899999999999998664

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-21  Score=141.80  Aligned_cols=107  Identities=27%  Similarity=0.345  Sum_probs=91.3

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCC-CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-c
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNG-QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R  228 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g-~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v  228 (268)
                      ....|+|++++.|.  .+.|.|+|++|+||+  +..+ .+||||++++.++  ...+++|++++++.||.|||+|.|. +
T Consensus         5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~~~   82 (138)
T d1ugka_           5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE--KKHKVKTRVLRKTLDPAFDETFTFYGI   82 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT--TCSEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCC--CCEeEeCeeEeCCCCCceeeEEEEeee
Confidence            34579999999998  889999999999997  3344 3799999999733  3456899999999999999999996 6


Q ss_pred             cCCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         229 SLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       229 ~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      +..++..  |.|+|||++.+ ++++||++.|+|+++..
T Consensus        83 ~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             CSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred             CHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccC
Confidence            6666654  99999999988 89999999999999865

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-21  Score=142.18  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=92.8

Q ss_pred             CeEEEEEEEcccCccc-----cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHIL-----QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~-----~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d  117 (268)
                      .+.|+|+|+ +|+||+     +..|.+| ||+        ++.||++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus         2 s~~l~V~v~-~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVL-RATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEE-EEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEE-EccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECC
Confidence            478999999 999998     3457899 998        567999999999999999999998776 678999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                       .. +|++||++.++|+++..+...+.|++|.+.+     .|+|++++.+
T Consensus        81 -~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~g~i~~~l~~  123 (126)
T d1rlwa_          81 -YV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVT-----EMVLEMSLEV  123 (126)
T ss_dssp             -SS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTE-----EEEEEEEEEC
T ss_pred             -CC-CCCeEEEEEEEHHHccCCCeEEEEEEccCCC-----eEEEEEEEEE
Confidence             55 5889999999999998888888999996643     5888888765

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2e-21  Score=144.91  Aligned_cols=114  Identities=21%  Similarity=0.242  Sum_probs=96.5

Q ss_pred             cCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccC-CCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954          50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVN-PVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS  120 (268)
Q Consensus        50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~-~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~  120 (268)
                      ....|.|+|+|+ +|++|+  +..+.+| ||+     +..+|++++ +++||.|||+|.|.+......|.|+|||+| .+
T Consensus         6 ~~p~G~L~V~v~-~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d-~~   83 (136)
T d1wfja_           6 SGPHGTLEVVLV-SAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD-VG   83 (136)
T ss_dssp             CCCEEEEEEEEE-EEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSS-SC
T ss_pred             CCCcEEEEEEEE-EeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEec-CC
Confidence            445789999999 999999  7788999 999     677888876 589999999999999887788999999999 78


Q ss_pred             CCCceeEEEEEeccccccc-cCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         121 KTDRVLGKVTIQRSDLHRI-SNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       121 ~~d~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++|++||++.|+|.++... .....|+.+..   +....|+|++++.|.
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~---~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVK---DEEYKGEIWVALSFK  129 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEE---TTEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEecC---CCccCEEEEEEEEEE
Confidence            8999999999999988643 33467888753   234579999999985

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=5.8e-22  Score=148.92  Aligned_cols=108  Identities=25%  Similarity=0.350  Sum_probs=90.3

Q ss_pred             ccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc---------ceeeeceeccCCCCCccceEE
Q psy3954         156 EVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK---------SDVQKSKVKKKSHSPVFNESF  224 (268)
Q Consensus       156 ~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~---------~~~~kT~v~~~t~nP~~ne~f  224 (268)
                      ...|+|++++.|..+.|.|.|++|+||+  +..|.+||||++++..+...         ..+++|++++++.||.|||.|
T Consensus         4 p~~G~l~lsl~y~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T d1rh8a_           4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             CcceEEEEEEEEeCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEE
Confidence            3579999999999999999999999997  56788999999999533221         234689999999999999999


Q ss_pred             EEE-ccCCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         225 MFD-RSLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       225 ~f~-v~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      .|. ++..++..  |.|+|||++.+ ++++||++.|+|+++..
T Consensus        84 ~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~  126 (142)
T d1rh8a_          84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH  126 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG
T ss_pred             EEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCC
Confidence            997 43333333  99999999988 89999999999999865

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-21  Score=141.80  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             cccceEEEEEEEEc--CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954         155 SEVQGKIQIGVLST--PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD  232 (268)
Q Consensus       155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~  232 (268)
                      ....|+|++++.|.  .+.|.|+|++|++|+ ..|.+||||++++.++ .....++|++++++.||+|||.|.|.++..+
T Consensus         9 ~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~-~~g~~dpyVkv~l~~~-~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~   86 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTSN-HDGGCDCYVQGSVANR-TGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEECCC-CSSCCCEEEEEEEEET-TEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CCcCCEEEEEEEECCCCCEEEEEEEEcCCCC-CCCCcCcEEEEEECCC-CCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence            34469999999997  889999999999995 4567899999999843 2345688999999999999999999998777


Q ss_pred             Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC--CCCCC
Q psy3954         233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET--SSSWW  268 (268)
Q Consensus       233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~--~~~~w  268 (268)
                      +..  |.|+|||++.+ ++++||++.|+|.++..  +..+|
T Consensus        87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W  127 (138)
T d1wfma_          87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQW  127 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEE
T ss_pred             ccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEe
Confidence            655  99999999988 89999999999999865  34444

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=141.01  Aligned_cols=114  Identities=11%  Similarity=-0.002  Sum_probs=100.6

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE---------EEeeecccCCCCCCc
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT---------QILNSPSVNPVTSPF   93 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~---------~~~~T~~~~~t~nP~   93 (268)
                      .-+.++++.++.|..+             .+.|.|+|+ +|++|+ ..+.+| ||+         ..++|++++++.||+
T Consensus         9 ~~~~~~l~~sl~y~~~-------------~~~L~V~v~-~a~~L~-~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~   73 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQ-------------KAELFVTRL-EAVTSN-HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT   73 (138)
T ss_dssp             CSSCCEEEEEEEEETT-------------TTEEEEEEE-EEECCC-CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE
T ss_pred             CCcCCEEEEEEEECCC-------------CCEEEEEEE-EcCCCC-CCCCcCcEEEEEECCCCCccceeeeEECCCCCce
Confidence            3456889999999877             789999999 999997 556789 999         467899999999999


Q ss_pred             cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954          94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ  153 (268)
Q Consensus        94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  153 (268)
                      |||.|.|.++..   ...|.|+|||.+ .++++++||++.|+|.++......+.|++|.+..+
T Consensus        74 wne~f~f~v~~~~l~~~~L~~~V~d~~-~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~  135 (138)
T d1wfma_          74 WEEGLVLPLAEEELPTATLTLTLRTCD-RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP  135 (138)
T ss_dssp             CSSCEEEECCTTSSTTCEEEEEEEECC-SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred             EeeeEEEEeeehhccceEEEEEEeeec-ccccceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence            999999998765   678999999999 78899999999999999987788899999988654

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.2e-22  Score=151.79  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             ccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954         156 EVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG  231 (268)
Q Consensus       156 ~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~  231 (268)
                      ...|+|++++.|.  .+.|.|+|++|+||+  +..+.+||||++++..++....+++|++++++.||+|||.|.|.++..
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~   83 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE   83 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence            3479999999999  689999999999997  556779999999998655555678999999999999999999998876


Q ss_pred             CCce--EEEEEEecCCC-CCeeeEEEEEeCCccC
Q psy3954         232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKE  262 (268)
Q Consensus       232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~  262 (268)
                      ++..  |.|+|||++.. ++++||++.|+++++.
T Consensus        84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             hcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence            6655  99999999888 8999999999998764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.5e-20  Score=138.97  Aligned_cols=109  Identities=20%  Similarity=0.304  Sum_probs=92.9

Q ss_pred             eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954          27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFG   95 (268)
Q Consensus        27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wn   95 (268)
                      .|+++.+++|...             .+.|.|+|+ +|+||+  +..+.+| ||+        ..++|+++++|.||+||
T Consensus         4 ~G~l~~sl~y~~~-------------~~~L~V~V~-~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   69 (130)
T d1dqva1           4 CGRISFALRYLYG-------------SDQLVVRIL-QALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN   69 (130)
T ss_dssp             SCEEEEEEECCSS-------------SCEEEEEEE-EEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEE
T ss_pred             cEEEEEEEEEECC-------------CCEEEEEEE-eeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeee
Confidence            4789999999877             789999999 999998  7788999 998        56899999999999999


Q ss_pred             cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccc-c-ccCccceecCcc
Q psy3954          96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH-R-ISNKEHWFPLTP  150 (268)
Q Consensus        96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~-~-~~~~~~w~~L~~  150 (268)
                      |+|.|.++..   ...|.|+|||++ .+++|++||++.|++.... . ......|++|.+
T Consensus        70 e~f~f~v~~~~~~~~~L~v~V~d~~-~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          70 ETFQFSVPLAELAQRKLHFSVYDFD-RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             EEEEEECCGGGGSSCCCEEEEEECC-SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             eEEEEEEchHHcCCCeEEEEEEEcC-CCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999998765   567999999999 7889999999999865432 2 234567999865

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2e-20  Score=138.63  Aligned_cols=97  Identities=20%  Similarity=0.410  Sum_probs=85.5

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD  117 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d  117 (268)
                      .+.|.|+|+ +|+||+  +..|.+| ||+          .+++|+++++|.||+|||.|.|.++..  ...|.|+|||.|
T Consensus        14 ~~~L~V~V~-~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          14 REVLIVVVR-DAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSEEEEEEE-EEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEE-eeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            478999999 999998  7888999 999          467999999999999999999998765  568999999999


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                       .+++|++||.+.|+++++.. ...+.|++|.+.+
T Consensus        93 -~~~~d~~iG~~~i~l~~l~~-~~~~~W~~L~~~~  125 (132)
T d1a25a_          93 -LTSRNDFMGSLSFGISELQK-AGVDGWFKLLSQE  125 (132)
T ss_dssp             -SSSCCEEEEEEEEEHHHHTT-CCEEEEEECBCHH
T ss_pred             -CCCCCcEeEEEEEeHHHcCC-CCCCeEEECCCCC
Confidence             78899999999999999864 3567899997643

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.1e-20  Score=141.90  Aligned_cols=110  Identities=24%  Similarity=0.363  Sum_probs=95.2

Q ss_pred             ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-E------------------Eeee
Q psy3954          26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-Q------------------ILNS   83 (268)
Q Consensus        26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-~------------------~~~T   83 (268)
                      -.|.++.++.|.               .+.|.|+|+ +|+||+  +..|.+| ||+ .                  +.||
T Consensus         5 ~~G~l~lsl~y~---------------~~~L~V~V~-~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT   68 (142)
T d1rh8a_           5 ITGEIQLQINYD---------------LGNLIIHIL-QARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE---------------TTEEEEEEE-EEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEe---------------CCEEEEEEE-EeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeec
Confidence            357888888884               368999999 999998  7889999 998 1                  2689


Q ss_pred             cccCCCCCCccCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954          84 PSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT  152 (268)
Q Consensus        84 ~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  152 (268)
                      ++++++.||.|||+|.|. ++..   ...|.|+|||++ .+++|++||++.|+|.++........|++|.+.+
T Consensus        69 ~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d-~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEEC-SSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             cCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEec-CCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            999999999999999998 4332   678999999999 7889999999999999998888888999998865

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=138.69  Aligned_cols=94  Identities=24%  Similarity=0.295  Sum_probs=81.6

Q ss_pred             CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      .|.|.|+|++|+||+  +..|.+||||++.+.     ..+++|++++++.||+|||.|.|.+.... +.|.|+|||++..
T Consensus         5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~   78 (126)
T d2ep6a1           5 VGILQVKVLKAADLLAADFSGKSDPFCLLELG-----NDRLQTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGD   78 (126)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----TEEEECCCCSSCSSCCCCEEEEEEESCTT-CEEEEEEEEEETT
T ss_pred             cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC-----CeEEEEEeeCCceeEEEEEEEEEEEeccC-ceeEEEEEEccCC
Confidence            367899999999997  567889999999996     56789999999999999999999986532 3499999999988


Q ss_pred             -CCeeeEEEEEeCCccCCCCCCC
Q psy3954         247 -LNVFLGEVHIPLNNKETSSSWW  268 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~~~~~~~w  268 (268)
                       ++++||++.|+++++..+...|
T Consensus        79 ~~d~~lG~~~i~l~~l~~~~~~~  101 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRDGQPNC  101 (126)
T ss_dssp             EEEEECCBCEEEGGGCCSSCCEE
T ss_pred             cCcceEEEEEEEHHHCCCCCceE
Confidence             8999999999999998765444

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.2e-20  Score=136.42  Aligned_cols=112  Identities=15%  Similarity=0.170  Sum_probs=90.0

Q ss_pred             CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954          53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~  124 (268)
                      .+.|.|+|+ +|++|+  +..+.+| ||+     +.+||++++++.||.|||.|.|.+.+. +.|.|+|||++ .+++|+
T Consensus         5 ~~~L~v~v~-~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~~l~~~V~d~d-~~~~d~   81 (133)
T d2nq3a1           5 KSQLQITVI-SAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQ-TLKSDV   81 (133)
T ss_dssp             CEEEEEEEE-EEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTT-CEEEEEEEECC-SSSCCE
T ss_pred             ceEEEEEEE-EeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEec-ceeEEEEEEcc-CCCCCc
Confidence            478999999 999998  5566788 999     889999999999999999999998775 78999999999 899999


Q ss_pred             eeEEEEEecccccccc-----CccceecCcccCCCcccceEEEEEEEE
Q psy3954         125 VLGKVTIQRSDLHRIS-----NKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       125 ~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      +||++.++|.++....     ....|+.+..........|+|.+.+.+
T Consensus        82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            9999999999875321     123344444444445567999988754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=5.5e-20  Score=136.81  Aligned_cols=106  Identities=23%  Similarity=0.359  Sum_probs=90.9

Q ss_pred             CeEEEEEEEcccCcccc-------------CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEE
Q psy3954          53 LGTLRIRIQYTADHILQ-------------PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVY  112 (268)
Q Consensus        53 ~~~L~V~v~~~a~~L~~-------------~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~  112 (268)
                      .|.|+|+|+ +|++|+.             ..+.+| ||+      ...+|++++++.||.|||+|.|.+++. +.|.|+
T Consensus         5 ~G~L~v~I~-~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~   82 (136)
T d1gmia_           5 NGLLKIKIC-EAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEE-EEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             EEEEEEEEE-EeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEE
Confidence            589999999 9999982             356789 999      557899999999999999999999765 889999


Q ss_pred             EEeCCCCCCCCceeEEEEEecccccccc--CccceecCcccCCCcccceEEEEEEEEc
Q psy3954         113 AYDRDRTSKTDRVLGKVTIQRSDLHRIS--NKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       113 v~d~d~~~~~d~~iG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      |||.+ .+++|++||.+.++|+++....  ..+.|++|+|       +|+|++.+.+.
T Consensus        83 V~d~~-~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~  132 (136)
T d1gmia_          83 VFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLS  132 (136)
T ss_dssp             EEECC-SSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEE
T ss_pred             EEEec-CCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-------CcEEEEEEEEE
Confidence            99999 7899999999999999987443  3678999975       58888887763

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=133.27  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=86.2

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.++.++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+          ..+||+++++++||.|
T Consensus         1 G~l~l~l~y~~~-------------~~~L~V~V~-~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~w   66 (125)
T d2bwqa1           1 GQLSIKLWFDKV-------------GHQLIVTIL-GAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW   66 (125)
T ss_dssp             CEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEE
T ss_pred             CEEEEEEEEECC-------------CCEEEEEEE-EeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEE
Confidence            567888888766             789999999 999998  7788999 998          4579999999999999


Q ss_pred             CcEEEEE-ecCC---CcEEEEEEEeCCCCC--CCCceeEEEEEeccccccccCccceecCc
Q psy3954          95 GEEFQFD-IPRR---FRHLAVYAYDRDRTS--KTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        95 ne~f~f~-v~~~---~~~l~~~v~d~d~~~--~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      ||+|.|. ++..   ...|.|+|||.+ ..  +++++||++.++|+++.... ...|++|+
T Consensus        67 ne~f~f~~~~~~~l~~~~L~i~v~d~~-~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          67 NQTFIYSPVHRREFRERMLEITLWDQA-RVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EEEEEECSCCGGGGGGCEEEEEEEEC--------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ccEEEEeeeChhhcCCCEEEEEEEECC-CCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            9999997 5544   568999999999 54  34569999999999987544 46799984

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.4e-19  Score=131.63  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             eEEEEEEEcccCccc----cCCCCCC-ceE----------EEeeecccCCC-CCCccCcEEEEEecCC-CcEEEEEEEeC
Q psy3954          54 GTLRIRIQYTADHIL----QPHYYED-LCT----------QILNSPSVNPV-TSPFFGEEFQFDIPRR-FRHLAVYAYDR  116 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~----~~~~~~d-yv~----------~~~~T~~~~~t-~nP~wne~f~f~v~~~-~~~l~~~v~d~  116 (268)
                      ..|.|+|+ +|++|+    +.++.+| ||+          ...||++++++ +||.|||+|.|.+... ...|.|+|||+
T Consensus         4 ~~l~V~Vi-~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRII-SGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEE-EEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             EEEEEEEE-EeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            47999999 999997    4577899 998          57889988765 7999999999997666 67899999999


Q ss_pred             CCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954         117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS  167 (268)
Q Consensus       117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~  167 (268)
                      | ..++|++||++.+||+.+..+   ..|++|.......-..++|.+.+.+
T Consensus        83 d-~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          83 D-SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             C-TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             c-CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            9 788999999999999998643   4688886544333345677776655

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.6e-19  Score=136.41  Aligned_cols=112  Identities=19%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             cceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCC
Q psy3954          25 YKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTS   91 (268)
Q Consensus        25 ~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~n   91 (268)
                      -++|.+..++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+          ..++|++++++.|
T Consensus         9 ~~~G~l~~sl~Y~~~-------------~~~L~V~V~-~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~n   74 (157)
T d1uowa_           9 EKLGDICFSLRYVPT-------------AGKLTVVIL-EAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLN   74 (157)
T ss_dssp             GCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSS
T ss_pred             eeeeEEEEEEEEcCC-------------CCEEEEEEE-EEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCC
Confidence            368999999999876             789999999 999998  7778999 999          3568999999999


Q ss_pred             CccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccc------------cccCccceecCccc
Q psy3954          92 PFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH------------RISNKEHWFPLTPV  151 (268)
Q Consensus        92 P~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~  151 (268)
                      |+|||+|.|.++..   ...|.|+|||.+ .++++++||++.|++....            .......|+.|++.
T Consensus        75 P~wne~f~F~v~~~~l~~~~l~i~v~d~~-~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          75 PYYNESFSFEVPFEQIQKVQVVVTVLDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             CEEEEEEEEECCGGGGGGCEEEEEEEECC-SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             cccCCeEEEEecHHHcCccEEEEEEcccC-CCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            99999999998776   568999999999 7899999999999987532            12335678888764

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.4e-19  Score=133.79  Aligned_cols=97  Identities=21%  Similarity=0.313  Sum_probs=79.2

Q ss_pred             CeEEEEEceecCCC----CCCCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCCceEEEEEEecC
Q psy3954         170 TSLMVNVNEASGLT----QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDPIELVVSLHHDI  244 (268)
Q Consensus       170 ~~L~v~v~~a~~L~----~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~  244 (268)
                      .+|.|+|++|++|+    +.++.+||||++++...+....+++|+++++ ++||.|||+|.|.+.......|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            57999999999996    2456699999999974444456788887764 579999999999987766666999999999


Q ss_pred             CC-CCeeeEEEEEeCCccCCCCC
Q psy3954         245 SG-LNVFLGEVHIPLNNKETSSS  266 (268)
Q Consensus       245 ~~-~~~~lG~~~l~l~~~~~~~~  266 (268)
                      .. ++++||++.|+|+++..|..
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~~  106 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGYR  106 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCCE
Confidence            98 89999999999999987644

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-19  Score=132.04  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=90.9

Q ss_pred             cceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCC-CCC-ceE--------EEeeecccCCCCCC
Q psy3954          25 YKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHY-YED-LCT--------QILNSPSVNPVTSP   92 (268)
Q Consensus        25 ~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~-~~d-yv~--------~~~~T~~~~~t~nP   92 (268)
                      -.+|.++.+++|..+             .+.|.|+|+ +|+||+  +..+ .+| ||+        ..+||+++++++||
T Consensus         6 ~~~G~l~~sl~Y~~~-------------~~~L~V~V~-~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP   71 (138)
T d1ugka_           6 SGLGTLFFSLEYNFE-------------RKAFVVNIK-EARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP   71 (138)
T ss_dssp             CCCCEEEEEEEEEGG-------------GTEEEEEEE-EEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSC
T ss_pred             CCCEEEEEEEEEeCC-------------CCEEEEEEE-EecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCC
Confidence            358999999999887             789999999 999998  4444 578 998        57889999999999


Q ss_pred             ccCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEecccccccc-CccceecC
Q psy3954          93 FFGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRIS-NKEHWFPL  148 (268)
Q Consensus        93 ~wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~-~~~~w~~L  148 (268)
                      .|||+|.|. ++..   ...|+|+|||.| .+++|++||++.++|+++...+ ....|..+
T Consensus        72 ~wne~f~f~~~~~~~l~~~~L~~~V~d~d-~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          72 AFDETFTFYGIPYTQIQELALHFTILSFD-RFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             EEEEEEEEECCCSTTGGGCEEEEEEEEEC-SSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             ceeeEEEEeeeCHHHcccceEEEEEEECC-CCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            999999997 5544   568999999999 7889999999999999986433 34455554

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.1e-18  Score=130.15  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.++.++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+          .++||++++++.||.|
T Consensus         2 G~l~~sl~Y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~w   67 (138)
T d1w15a_           2 GELLVSLCYQST-------------TNTLTVVVL-KARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF   67 (138)
T ss_dssp             CEEEEEEEEETT-------------TTEEEEEEE-EEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEE
T ss_pred             cEEEEEEEEcCC-------------CCEEEEEEE-EeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeE
Confidence            678888888876             789999999 999999  6778899 998          4668999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL  148 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L  148 (268)
                      ||+|.|.++..   ...|.|.|||.+ .++++++||++.+++....  .+.++|+++
T Consensus        68 ne~f~F~v~~~~~~~~~l~i~v~d~~-~~~~~~~iG~~~i~l~~~~--~~~~hW~~l  121 (138)
T d1w15a_          68 NELFVFDIPCESLEEISVEFLVLDSE-RGSRNEVIGRLVLGATAEG--SGGGHWKEI  121 (138)
T ss_dssp             EEEEEEECCSSSSTTEEEEEEEEECC-TTSCCEEEEEEEESTTCCS--HHHHHHHHH
T ss_pred             CcEEEEEecHHHhCccEEEEEEEeCC-CCCCCCEEEEEEEcchhCC--chHHHHHHH
Confidence            99999998765   567999999999 7889999999999987643  334556654

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.6e-19  Score=129.59  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=80.0

Q ss_pred             CCeEEEEEceecCCCC-----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEec
Q psy3954         169 PTSLMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD  243 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~-----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~  243 (268)
                      +++|+|+|++|+||+.     ..|.+||||++.+.  +....+++|++++++.||.|||+|.|.+.......|.|+|||+
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~--~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~   79 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   79 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECT--TSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEEC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEEC--CcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEEC
Confidence            4689999999999973     35789999999985  3334578999999999999999999998755544599999999


Q ss_pred             CCCCCeeeEEEEEeCCccCCC
Q psy3954         244 ISGLNVFLGEVHIPLNNKETS  264 (268)
Q Consensus       244 ~~~~~~~lG~~~l~l~~~~~~  264 (268)
                      +..++++||++.++|+++..+
T Consensus        80 d~~~d~~lG~~~i~L~~l~~~  100 (126)
T d1rlwa_          80 NYVMDETLGTATFTVSSMKVG  100 (126)
T ss_dssp             CSSCCEEEEEEEEEGGGSCTT
T ss_pred             CCCCCCeEEEEEEEHHHccCC
Confidence            877899999999999998764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.3e-19  Score=132.73  Aligned_cols=107  Identities=21%  Similarity=0.320  Sum_probs=91.6

Q ss_pred             EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954          28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF   94 (268)
Q Consensus        28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w   94 (268)
                      |.+..++.|...             .+.|.|+|+ +|+||+  +..+.+| ||+          .++||++++++.||.|
T Consensus         2 G~l~l~l~Y~~~-------------~~~L~V~v~-~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~w   67 (137)
T d2cm5a1           2 GKILVSLMYSTQ-------------QGGLIVGII-RCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF   67 (137)
T ss_dssp             CEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEE
T ss_pred             cEEEEEEEEECC-------------CCEEEEEEE-EEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCcc
Confidence            678888888766             789999999 999999  6778899 998          4578999999999999


Q ss_pred             CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954          95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV  151 (268)
Q Consensus        95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~  151 (268)
                      ||+|.|.++..   ...|.|.|||.+ .++++++||++.+++..+.  ...+.|++|.+.
T Consensus        68 ne~f~f~v~~~~l~~~~l~v~v~~~~-~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~  124 (137)
T d2cm5a1          68 NEEFFYDIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGISAKG--ERLKHWYECLKN  124 (137)
T ss_dssp             EEEEEEECCGGGGGGCEEEEEEEECC-SSSCCEEEEEEEEETTCCH--HHHHHHHHHHHC
T ss_pred             ceEEEEEeEHHHccccEEEEEeeeCC-CCCCCCEEEEEEeCccccC--cchhhhhhHhhC
Confidence            99999998765   578999999999 7889999999999998653  345678876543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.4e-19  Score=136.20  Aligned_cols=110  Identities=17%  Similarity=0.263  Sum_probs=94.0

Q ss_pred             ccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC
Q psy3954          24 TYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT   90 (268)
Q Consensus        24 ~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~   90 (268)
                      ...+|.++.+++|...             .+.|.|+|+ +|+||+  +..+.+| ||+          .++||++++++.
T Consensus         3 ~~~~G~l~~sl~Y~~~-------------~~~L~V~V~-~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~   68 (145)
T d1dqva2           3 KADLGELNFSLCYLPT-------------AGLLTVTII-KASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL   68 (145)
T ss_dssp             CSCCCEEEEEEEEETT-------------TTEEEEEEE-EEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred             cCcceEEEEEEEEcCC-------------CCEEEEEEE-EEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCC
Confidence            4578999999999976             789999999 999998  6778899 998          357899999999


Q ss_pred             CCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954          91 SPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT  149 (268)
Q Consensus        91 nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~  149 (268)
                      ||.|||.|.|.++..   ...|.|.|||.+ ..+++++||++.|++..+.. .+..+|+++.
T Consensus        69 ~P~wne~f~F~v~~~~~~~~~l~v~v~d~~-~~~~~~~iG~~~i~l~~~~~-~~~~~W~~l~  128 (145)
T d1dqva2          69 NPTYNEALVFDVAPESVENVGLSIAVVDYD-CIGHNEVIGVCRVGPEAADP-HGREHWAEML  128 (145)
T ss_dssp             SCEEEECCCCCCCSGGGGSCCCCCEEEECC-SSSCCEEEEECCCSSCTTCH-HHHHHHHTSS
T ss_pred             CceecceEEEEEehhhcCCCEEEEEEEecC-CCCCCcEEEEEEECchHcCc-hhhHHHHHHH
Confidence            999999999998765   567999999999 78899999999999987642 2345677653

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=3.5e-18  Score=125.07  Aligned_cols=110  Identities=19%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             eEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954          54 GTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG  127 (268)
Q Consensus        54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG  127 (268)
                      +.|.|+|. +|++|+. .+.+| ||+     .+.+|.+++ +.||.|||+|.|.+......|.|+|||.+ .. .|++||
T Consensus         2 ~~L~V~v~-~a~~l~~-~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~-~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVK-KAKFDGA-QEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEE-EEECSSC-GGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-CEEEEE
T ss_pred             eEEEEEEE-EEECCCC-CCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCC-Cc-CCcceE
Confidence            57999999 9999983 44678 999     788888886 56999999999999888889999999999 66 588999


Q ss_pred             EEEEeccccccc--cCccceecCcccCC--Ccc-------cceEEEEEEEEc
Q psy3954         128 KVTIQRSDLHRI--SNKEHWFPLTPVTQ--DSE-------VQGKIQIGVLST  168 (268)
Q Consensus       128 ~~~i~l~~l~~~--~~~~~w~~L~~~~~--~~~-------~~G~i~v~l~~~  168 (268)
                      ++.|||+++...  .....|++|.+...  .++       ..+.|.+.++|+
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~~  128 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  128 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             EEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEcC
Confidence            999999998643  34678999965431  111       234677777663

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.4e-18  Score=124.60  Aligned_cols=85  Identities=16%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-  246 (268)
                      ++|.|+|++|++++  +..+.+||||++.+.     ...++|++++++.||.|||.|.|.+...  +.|.|+|||++.+ 
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~~~~~--~~l~~~V~d~d~~~   78 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVD-----GQSKKTEKCNNTNSPKWKQPLTVIVTPV--SKLHFRVWSHQTLK   78 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEEECTT--CEEEEEEEECCSSS
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEEC-----CeEEeeEEEEecccEEEcceEEEEEEec--ceeEEEEEEccCCC
Confidence            57899999999997  345669999999987     5678999999999999999999998642  4599999999999 


Q ss_pred             CCeeeEEEEEeCCcc
Q psy3954         247 LNVFLGEVHIPLNNK  261 (268)
Q Consensus       247 ~~~~lG~~~l~l~~~  261 (268)
                      +|++||++.++|.++
T Consensus        79 ~d~~iG~~~i~L~~l   93 (133)
T d2nq3a1          79 SDVLLGTAALDIYET   93 (133)
T ss_dssp             CCEEEEEEEEEHHHH
T ss_pred             CCceEEEEEEEHHHh
Confidence            899999999998776

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=9.4e-18  Score=124.61  Aligned_cols=86  Identities=31%  Similarity=0.433  Sum_probs=73.0

Q ss_pred             CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954         170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIELVVSLHHDISG  246 (268)
Q Consensus       170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~  246 (268)
                      |.|.|+|++|++|+  +..|.+||||++++.     ...++|++++ ++.||.|||.|.|.+... ...|.|+|||++..
T Consensus        10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~-----~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~   83 (136)
T d1wfja_          10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----TQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVG   83 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----SCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCccEEEEEe-----eeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCC
Confidence            57889999999997  456889999999986     4567787776 689999999999998753 23499999999998


Q ss_pred             -CCeeeEEEEEeCCcc
Q psy3954         247 -LNVFLGEVHIPLNNK  261 (268)
Q Consensus       247 -~~~~lG~~~l~l~~~  261 (268)
                       +|++||++.|+|.++
T Consensus        84 ~~d~~iG~~~i~L~~l   99 (136)
T d1wfja_          84 TEDDAVGEATIPLEPV   99 (136)
T ss_dssp             TTTCCSEEEEEESHHH
T ss_pred             CCCCEEEEEEEEhHHh
Confidence             899999999999876

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=8.2e-17  Score=117.07  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             EEEEEEcccCccccCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954          56 LRIRIQYTADHILQPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR  124 (268)
Q Consensus        56 L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~  124 (268)
                      +.|.+. .+..++..++.+| ||+          ...+|+++++|+||+|||+|.|.+... +.|.|.|||+|     |+
T Consensus         7 ~~~~~~-~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-~~l~i~V~d~d-----d~   79 (123)
T d1bdya_           7 ISFNSY-ELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA-----ED   79 (123)
T ss_dssp             EEEEEE-ECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-CEEEEEEEEET-----TE
T ss_pred             EEEEEe-ecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc-cEEEEEEEEcc-----cc
Confidence            444555 5555557788999 999          135688999999999999999999775 78999999987     67


Q ss_pred             eeEEEEEecccccc-----ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954         125 VLGKVTIQRSDLHR-----ISNKEHWFPLTPVTQDSEVQGKIQIGVLST  168 (268)
Q Consensus       125 ~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~  168 (268)
                      ++|.+.++++++..     +...+.|++|++       .|+|++++.|.
T Consensus        80 ~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f  121 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYF  121 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred             ccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEe
Confidence            99999999998863     335678999964       69999999874

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.66  E-value=1.1e-16  Score=118.56  Aligned_cols=89  Identities=21%  Similarity=0.334  Sum_probs=75.2

Q ss_pred             CCeEEEEEceecCCCC-------------CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954         169 PTSLMVNVNEASGLTQ-------------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE  235 (268)
Q Consensus       169 ~~~L~v~v~~a~~L~~-------------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~  235 (268)
                      .|.|.|+|++|++|+.             ..+.+||||++.+.    .....+|++++++.||.|||.|.|.+...  ..
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~----~~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~   78 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD----DSRIGQTATKQKTNSPAWHDEFVTDVCNG--RK   78 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET----TEEEEECCCCSSCSSCEEEEEEEEEEEEE--CE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC----CCcCcEeeEEcCCCCccCccEEEEEEecC--Cc
Confidence            4789999999999963             24558999999996    23456899999999999999999998532  34


Q ss_pred             EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954         236 LVVSLHHDISG-LNVFLGEVHIPLNNKET  263 (268)
Q Consensus       236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~  263 (268)
                      |.|+|||++.+ +|++||++.|+|+++..
T Consensus        79 l~i~V~d~~~~~~d~~iG~~~i~l~~l~~  107 (136)
T d1gmia_          79 IELAVFHDAPIGYDDFVANCTIQFEELLQ  107 (136)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHTS
T ss_pred             eEEEEEEecCCCCceeEEEEEEEHHHhhh
Confidence            99999999988 89999999999988854

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.1e-16  Score=117.04  Aligned_cols=86  Identities=20%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCe
Q psy3954         170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNV  249 (268)
Q Consensus       170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~  249 (268)
                      +.|.|+|.+|++|...+ ..||||++.+.     ..+.+|.++++ .||.|||.|.|.+.... ..|.|+|||++..+|+
T Consensus         2 ~~L~V~v~~a~~l~~~~-~~dpYv~l~~~-----~~k~~T~~~k~-~nP~Wne~f~f~v~~~~-~~L~v~V~d~~~~~d~   73 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE-KFNTYVTLKVQ-----NVKSTTIAVRG-SQPSWEQDFMFEINRLD-LGLTVEVWNKGLIWDT   73 (128)
T ss_dssp             EEEEEEEEEEECSSCGG-GCEEEEEEEET-----TEEEECCCEES-SSCEEEEEEEEEECCCS-SEEEEEEEECCSSCEE
T ss_pred             eEEEEEEEEEECCCCCC-CcCeEEEEEeC-----CEEEEEEEecC-CCCeEEEEEEEeecccc-ceEEEEEEeCCCcCCc
Confidence            56899999999998633 57999999997     56788888875 59999999999986543 3499999999877899


Q ss_pred             eeEEEEEeCCccCC
Q psy3954         250 FLGEVHIPLNNKET  263 (268)
Q Consensus       250 ~lG~~~l~l~~~~~  263 (268)
                      +||++.|+|+++..
T Consensus        74 ~lG~~~I~L~~l~~   87 (128)
T d2cjta1          74 MVGTVWIPLRTIRQ   87 (128)
T ss_dssp             EEEEEEEEGGGSCB
T ss_pred             ceEEEEEEehhhcc
Confidence            99999999999853

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=105.00  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=67.8

Q ss_pred             eEEEEEceecCCCCCCCCCCCEEEEEEEecCC-cceeeec--eeccCCCCCccceE-EEE-EccCCCCceEEEEEEecCC
Q psy3954         171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHN-KSDVQKS--KVKKKSHSPVFNES-FMF-DRSLGDPIELVVSLHHDIS  245 (268)
Q Consensus       171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~-~~~~~kT--~v~~~t~nP~~ne~-f~f-~v~~~~~~~l~i~V~d~~~  245 (268)
                      .|.|+|+.|++|+..  .+||||+|.+...+. ...+.+|  .+..++.||.|||. |.| .+..+++..|.|.|||++ 
T Consensus         2 tl~V~Visaq~L~~~--~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d-   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER--SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG-   78 (122)
T ss_dssp             EEEEEEEEEESCCSS--CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT-
T ss_pred             EEEEEEEEeeCCCCC--CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC-
Confidence            589999999999854  379999999973222 1222333  34578899999976 444 355556666999999984 


Q ss_pred             CCCeeeEEEEEeCCccCCCC
Q psy3954         246 GLNVFLGEVHIPLNNKETSS  265 (268)
Q Consensus       246 ~~~~~lG~~~l~l~~~~~~~  265 (268)
                        +++||++.+|++++..|.
T Consensus        79 --~~~lG~~~ipl~~l~~Gy   96 (122)
T d2zkmx2          79 --NKFLGHRIIPINALNSGY   96 (122)
T ss_dssp             --TEEEEEEEEEGGGBCCEE
T ss_pred             --CCEEEEEEEEcccCcCCc
Confidence              899999999999998764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.2e-14  Score=103.09  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=68.5

Q ss_pred             EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeee
Q psy3954         172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFL  251 (268)
Q Consensus       172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~l  251 (268)
                      +.|.+..+..++...+.+||||+|++.........++|.++++|+||+|||+|.|.+..  ...|.|.|||+|   ++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d~~~   81 (123)
T d1bdya_           7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---EDPM   81 (123)
T ss_dssp             EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---TEEE
T ss_pred             EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---cccc
Confidence            45566667777778888999999999744333345689999999999999999999854  345999999984   7899


Q ss_pred             EEEEEeCCccC
Q psy3954         252 GEVHIPLNNKE  262 (268)
Q Consensus       252 G~~~l~l~~~~  262 (268)
                      |.+.+++..+.
T Consensus        82 g~~~i~l~~l~   92 (123)
T d1bdya_          82 SEVTVGVSVLA   92 (123)
T ss_dssp             EEEEEEHHHHH
T ss_pred             CccEEehhhee
Confidence            99999987763

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=94.10  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             EEEEEEEcccCccccCCCCCC-ceE-----------EEeeecc--cCCCCCCccCcE-EEEE-ecCC-CcEEEEEEEeCC
Q psy3954          55 TLRIRIQYTADHILQPHYYED-LCT-----------QILNSPS--VNPVTSPFFGEE-FQFD-IPRR-FRHLAVYAYDRD  117 (268)
Q Consensus        55 ~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~--~~~t~nP~wne~-f~f~-v~~~-~~~l~~~v~d~d  117 (268)
                      .|.|+|+ +|++|+..  .+| ||+           .+.+|++  ..+++||.|||+ |.|. +... ...|+|.|||++
T Consensus         2 tl~V~Vi-saq~L~~~--~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVI-SGQFLSER--SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEE-EEESCCSS--CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEE-EeeCCCCC--CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            5899999 99999832  368 998           2234443  467899999976 4443 4443 468999999987


Q ss_pred             CCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEE
Q psy3954         118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                           |++||++.+|++.+..+   -++.+|.......-..+.|.+.+.
T Consensus        79 -----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~~L~v~i~  119 (122)
T d2zkmx2          79 -----NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLE  119 (122)
T ss_dssp             -----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEE
T ss_pred             -----CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCceEEEEEE
Confidence                 68999999999988643   466777654433223455555543

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=2.5  Score=29.08  Aligned_cols=112  Identities=12%  Similarity=0.084  Sum_probs=71.1

Q ss_pred             CCCeEEEEEEEcccCccc-----cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC--------CcEEE
Q psy3954          51 QDLGTLRIRIQYTADHIL-----QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHLA  110 (268)
Q Consensus        51 ~~~~~L~V~v~~~a~~L~-----~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l~  110 (268)
                      ++.+.+.+.|. ++.=-+     -....+. ||.      +...|.++. ..+|.+|-+-.|.+..+        ...+.
T Consensus         7 ~gEnlfEihi~-~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~-g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           7 RGENLFEIHIN-KVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             SSCEEEEEEEE-EECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CCCcEEEEEEe-eEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceec-CCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            34677788887 763222     1122233 888      555565554 68999999999988776        57899


Q ss_pred             EEEEeCCCCCCCCceeEEEEEeccccccccCc-cceecCcccCCCcccceEEEEEEE
Q psy3954         111 VYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFPLTPVTQDSEVQGKIQIGVL  166 (268)
Q Consensus       111 ~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~-~~w~~L~~~~~~~~~~G~i~v~l~  166 (268)
                      ++++...  ...-..+|.+.|.+.++....+. .....|.........-|.|...++
T Consensus        85 lelhqa~--g~~~~tvA~g~i~l~~lLd~~~r~~~s~~l~g~~~~~~~~G~leyw~r  139 (142)
T d2yrba1          85 LEVHQAY--STEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFR  139 (142)
T ss_dssp             EEEEEEC--SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEE
T ss_pred             EEEEeec--CCCcceeEEEEEEhhHhhCccccccceeEEEccCCCcceEEEEEEEEE
Confidence            9999877  23345899999999988744332 223334333333224677776654