Psyllid ID: psy398

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHeknmmdeedqVSGIWQAKLDYLCSIGDRAEAFkladskfadktnpkshriDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Flexible Loop (DISEMBL)
mapyykevceefgwkmdEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLAdskfadktnpkshrIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Low Complexity Region (SEG)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Disordered region (IsUnstruct)
***YYKEVCEEFGWKMDEKFYT***************************VSGIWQAKLDYLCSIGDRAEAFKLADSKFA******SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI***
Disordered Region (DISOPRED)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRL******************SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS*
Disordered Region (DISEMBL)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Disordered Region (DISPRO)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q99JI4	389	26S proteasome non-ATPase	yes	N/A	0.956	0.398	0.457	5e-30
Q3T0B2	389	26S proteasome non-ATPase	yes	N/A	0.956	0.398	0.451	3e-29
Q15008	389	26S proteasome non-ATPase	yes	N/A	0.956	0.398	0.451	4e-29
Q9V3G7	389	26S proteasome non-ATPase	yes	N/A	0.956	0.398	0.396	8e-25
Q55C75	382	26S proteasome non-ATPase	yes	N/A	0.969	0.410	0.358	2e-21
Q20585	410	26S proteasome non-ATPase	yes	N/A	0.956	0.378	0.353	5e-20
Q93Y35	387	Probable 26S proteasome n	yes	N/A	0.950	0.397	0.345	2e-17
Q10335	409	Probable 26S proteasome r	yes	N/A	0.969	0.383	0.319	2e-16
Q06103	429	26S proteasome regulatory	yes	N/A	0.956	0.361	0.320	8e-15
Q8W425	389	26S proteasome non-ATPase	yes	N/A	0.950	0.395	0.321	2e-13

>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus GN=Psmd6 PE=1 SV=1

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD    ++MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCQIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Mus musculus (taxid: 10090)

>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus GN=PSMD6 PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 97/164 (59%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD     +MK ANE  LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  +  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCRIGDKEGALT-AFRRTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Bos taurus (taxid: 9913)

>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 97/164 (59%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W++D     +MK ANE  LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster GN=Rpn7 PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDL---EHEKNMMDEEDQVSGIWQAK 57
           MAP+Y+ +C E GW +D+     MK+ N   +++LD    + EKN+ + E + + +   K
Sbjct: 50  MAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANL--KK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+A A + A  K  +KT    HR+D VF L R+  F+  D   +T  I+KA 
Sbjct: 108 SEYLCRIGDKAAA-ETAFRKTYEKTVSLGHRLDIVFHLIRLGLFY-LDHDLITRNIDKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+GVY +A+R +  AA  F+D + +
Sbjct: 166 YLIE--EGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVST 207

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 5/162 (3%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMD-EEDQVSGIWQAKLD 59
           M P YK + E+  W  D+   +++K  NE  LK LD +   ++ +  E ++   + AK D
Sbjct: 43  MLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSD 102

Query: 60  YLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119
           + C IGD+  A ++    F +KT P   ++D VFTL R+  F   D   +T  +EKA  L
Sbjct: 103 FYCRIGDKDTAVEMYRQTF-EKTVPLGQKLDIVFTLIRMGIF-WMDHDIVTRNLEKAQSL 160

Query: 120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
           +E   GGDW  +N+LK YE VY ++IRQ+  A++L+++ + S
Sbjct: 161 VE--EGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVAS 200

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis elegans GN=rpn-7 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAP+Y+ VC +F   +D      MK AN+K++ E+  E    EKN+ + E +  G+ + K
Sbjct: 64  MAPFYELVCADFKIVVDATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVR-QGLLR-K 121

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +Y C IGD+  A K   + + +KT    +RID VF + R+  F   D   +   I KA 
Sbjct: 122 FEYYCQIGDKDNALKAYTATY-EKTVGMGYRIDVVFAMIRVGLFF-LDHHLINKFITKAK 179

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
           EL+E   GGDW  +N+L++YE +Y +++R +  AA+LF++ + +
Sbjct: 180 ELME--QGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPT 221

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 11/165 (6%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD---LEHEKNMMDEEDQVSGIWQAK 57
           MAP Y+ +       +D+     M+ ANE+ LK+LD    + E+N+   E +V     AK
Sbjct: 48  MAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENL--GESEVREAHLAK 105

Query: 58  LDYLCSIGDRAEAFKLADSKFAD-KTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116
             Y   I D+ +A  L   K  + KT     ++D VF   ++A+F+  D   ++ +I+KA
Sbjct: 106 ALYFIRISDKEKA--LEQLKLTEGKTVAVGQKMDVVFYTLQLAFFY-MDFDLVSKSIDKA 162

Query: 117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            +L E   GGDW  +N+LK YEG+YC++ R + +AA LF+D I +
Sbjct: 163 KKLFE--EGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 205

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10335|RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn7 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 1   MAPYYKEVCEE----FGWKMDEKFYTEMKDANEKRLKELDLEHEKNM-MDEEDQVSGIWQ 55
           +AP YK + E          D  F   M   NE++L E D   E    ++ E ++    +
Sbjct: 57  LAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMK 116

Query: 56  AKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEK 115
            K DY  +I DR    +L D  F ++      +ID +F+  R+AY +  D++ +   +EK
Sbjct: 117 NKADYYTNICDRERGVQLCDETF-ERATLTGMKIDVLFSKIRLAYVYA-DMRVVGQLLEK 174

Query: 116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
              LIE   GGDW  +N+LKAY+G+Y ++IR +  AA+L +D + +
Sbjct: 175 LKPLIE--KGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMST 218

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 26/181 (14%)

Query: 1   MAPYYKEVCEEF-------------------GW-KMDEKFYTEMKDANEKRLKELDLEHE 40
           MAPYYK +CEE+                    W K D++ Y E+   NE ++KEL+ + +
Sbjct: 59  MAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQ 118

Query: 41  KNMMDEEDQV--SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRI 98
           K   D+E ++  +  W    +Y   IGD+  A K    K   K      +ID + T+ R+
Sbjct: 119 KLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTL-GKSLSKAISTGAKIDVMLTIARL 177

Query: 99  AYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDV 158
            +F+  D   +   +E    +IE   GGDW  RN+ K Y G++CLA+R +  AA+L VD 
Sbjct: 178 GFFYN-DQLYVKEKLEAVNSMIE--KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234

Query: 159 I 159
           +
Sbjct: 235 L 235

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD---LEHEKNMMDEEDQVSGIWQAK 57
           MA  Y+ +      + D     EM+   E+ +++LD    + E+N+   E +V     AK
Sbjct: 50  MASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENL--GESEVREAHLAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFAD-KTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116
             Y   +G++ +A  L   K  + KT     ++D VF   +I +F+  D   ++ +I+KA
Sbjct: 108 SLYFIRVGEKEKA--LEQLKVTEGKTVAVGQKMDLVFHTLQIGFFY-MDFDLISKSIDKA 164

Query: 117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            +L E   GGDW  +N+LK YEG+YC+A R + +AA LF+D I +
Sbjct: 165 KKLFE--EGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSIST 207

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
389608903	382	26S proteasome non-ATPase regulatory sub	0.925	0.392	0.521	3e-43
357610675	382	hypothetical protein KGM_03040 [Danaus p	0.925	0.392	0.503	3e-42
242006070	387	26S proteasome non-ATPase regulatory sub	0.987	0.413	0.515	7e-41
389614706	299	26S proteasome non-ATPase regulatory sub	0.691	0.374	0.543	2e-30
410951525	389	PREDICTED: 26S proteasome non-ATPase reg	0.956	0.398	0.457	2e-28
126336111	389	PREDICTED: 26S proteasome non-ATPase reg	0.956	0.398	0.457	2e-28
38454206	389	26S proteasome non-ATPase regulatory sub	0.956	0.398	0.457	2e-28
46049022	389	26S proteasome non-ATPase regulatory sub	0.956	0.398	0.457	2e-28
395516441	441	PREDICTED: 26S proteasome non-ATPase reg	0.956	0.351	0.457	3e-28
301759269	389	PREDICTED: 26S proteasome non-ATPase reg	0.956	0.398	0.457	3e-28

>gi|389608903|dbj|BAM18063.1| 26S proteasome non-ATPase regulatory subunit rpn7 [Papilio xuthus]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/161 (52%), Positives = 109/161 (67%), Gaps = 11/161 (6%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDY 60
           MAPYYKEVC + GWK+D+  Y EM   N  RL +           E+D  + +WQ +LDY
Sbjct: 46  MAPYYKEVCTDLGWKLDQNLYDEMAKENLSRLSKFQ---------EDDSETPVWQDRLDY 96

Query: 61  LCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120
           LCSIGD+  A  LA +K+ D T   + R+DA+F LFRIAYFHGC+++ M  AI KA EL+
Sbjct: 97  LCSIGDKEAATALATTKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKDMGKAINKAHELV 156

Query: 121 EGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
           +   GGDW +RNKLKAYE +YCLA+R Y RAAELF+D + +
Sbjct: 157 D--KGGDWRSRNKLKAYEAIYCLAVRDYSRAAELFIDCVST 195

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610675|gb|EHJ67089.1| hypothetical protein KGM_03040 [Danaus plexippus]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 110/161 (68%), Gaps = 11/161 (6%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDY 60
           MAPYYKEVC + GW  D+K Y EM   N+++L +           E+D  + +WQ +LDY
Sbjct: 46  MAPYYKEVCADLGWPFDQKLYDEMAKENQEKLSKFQ---------EDDSETPVWQDRLDY 96

Query: 61  LCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120
           LCSIGD+  A  LA +K+ D T   + R+DA+F LFRIAYFHGC+++ M  A+ KA EL+
Sbjct: 97  LCSIGDKEAATALATAKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKDMGKAVTKAHELV 156

Query: 121 EGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
           +   GGDW +RNKLKAYE +YCLA+R Y RAA+LF+D + +
Sbjct: 157 D--KGGDWRSRNKLKAYEAIYCLAVRDYSRAADLFIDCVST 195

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006070|ref|XP_002423879.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212507125|gb|EEB11141.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDY 60
           MAPYY+ +CEE  W +D     +MK+ N K+ +EL     + +  +E   S +W+A+LDY
Sbjct: 45  MAPYYESLCEELHWPVDTVLLAKMKEENSKKFEELKKLANQTVDPDESTGSVVWRAELDY 104

Query: 61  LCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120
           LCSIGDR  A  LA  K+ D+T  K+ R DA FTLFRIAYFHGCDI+AM  AIE+A +LI
Sbjct: 105 LCSIGDRKAAEALATEKYNDQTLDKTKRTDAAFTLFRIAYFHGCDIKAMGKAIEQAKDLI 164

Query: 121 EGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
                GDWSARNKLKAYE +YCL +R + +AA+LF++ + +
Sbjct: 165 VK-GAGDWSARNKLKAYEALYCLGVRNFEKAAKLFIEAVPT 204

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614706|dbj|BAM20379.1| 26S proteasome non-ATPase regulatory subunit rpn7, partial [Papilio polytes]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 2/114 (1%)

Query: 48  DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQ 107
           D  + +WQ +LDYLCSIGD+  A  LA +K+ D T   + R+DA+F LFRIAYFHGC+++
Sbjct: 1   DSETPVWQDRLDYLCSIGDKEAATALATTKYEDSTLTTNRRLDAIFALFRIAYFHGCNVK 60

Query: 108 AMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            M  AI KA EL++   GGDW +RNKLKAYE +YCLA+R Y  AA+LF+D + +
Sbjct: 61  DMGKAINKAHELVD--KGGDWRSRNKLKAYEAIYCLAVRDYSHAADLFIDCVST 112

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410951525|ref|XP_003982446.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 [Felis catus]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD    ++MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDTDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126336111|ref|XP_001363402.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 [Monodelphis domestica]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD +   +MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDTELLNKMKKANEEELKRLDDELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|38454206|ref|NP_942025.1| 26S proteasome non-ATPase regulatory subunit 6 [Rattus norvegicus] gi|37748489|gb|AAH59159.1| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Rattus norvegicus] gi|149040032|gb|EDL94116.1| proteasome (prosome, macropain) 26S subunit, non-ATPase, 6, isoform CRA_a [Rattus norvegicus]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD    ++MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDMDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCQIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|46049022|ref|NP_079826.2| 26S proteasome non-ATPase regulatory subunit 6 [Mus musculus] gi|20978552|sp|Q99JI4.1|PSMD6_MOUSE RecName: Full=26S proteasome non-ATPase regulatory subunit 6; AltName: Full=26S proteasome regulatory subunit RPN7; AltName: Full=26S proteasome regulatory subunit S10; AltName: Full=p42A gi|13397899|emb|CAC34579.1| putative KIAA0107 homologue [Mus musculus] gi|13905154|gb|AAH06869.1| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Mus musculus] gi|148688680|gb|EDL20627.1| proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Mus musculus]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD    ++MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCQIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395516441|ref|XP_003762398.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 [Sarcophilus harrisii]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 100/164 (60%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD +  ++MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 102 MAPYYEALCKSLDWQMDAELLSKMKKANEEELKRLDDELEDAEKNL--GESEIRDAMMAK 159

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 160 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 217

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 218 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 259

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301759269|ref|XP_002915483.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 6-like [Ailuropoda melanoleuca]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 98/164 (59%), Gaps = 9/164 (5%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAK 57
           MAPYY+ +C+   W+MD     +MK ANE+ LK LD E    EKN+   E ++     AK
Sbjct: 50  MAPYYEALCKSLDWQMDTDLLNKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query: 58  LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
            +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct: 108 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query: 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
            LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D + +
Sbjct: 166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
MGI|MGI:1913663	389	Psmd6 "proteasome (prosome, ma	0.944	0.393	0.469	5.4e-31
RGD|735127	389	Psmd6 "proteasome (prosome, ma	0.944	0.393	0.469	5.4e-31
UNIPROTKB|F1N903	398	PSMD6 "Uncharacterized protein	0.950	0.386	0.453	8.8e-31
UNIPROTKB|F1MXE4	389	PSMD6 "26S proteasome non-ATPa	0.944	0.393	0.462	3.8e-30
UNIPROTKB|Q3T0B2	389	PSMD6 "26S proteasome non-ATPa	0.944	0.393	0.462	3.8e-30
UNIPROTKB|C9IZE4	442	PSMD6 "Proteasome (Prosome, ma	0.944	0.346	0.462	3.8e-30
UNIPROTKB|Q15008	389	PSMD6 "26S proteasome non-ATPa	0.944	0.393	0.462	3.8e-30
UNIPROTKB|Q6UV22	351	PSMD6 "KIAA0107 isoform" [Homo	0.944	0.435	0.462	3.8e-30
UNIPROTKB|E2RN00	516	PSMD6 "Uncharacterized protein	0.944	0.296	0.450	1.6e-29
ZFIN|ZDB-GENE-040426-1038	386	psmd6 "proteasome (prosome, ma	0.944	0.396	0.462	1.6e-29

MGI|MGI:1913663 Psmd6 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 6" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 76/162 (46%), Positives = 99/162 (61%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W+MD    ++MK ANE+ LK LD  LE  EKN+   E ++     AK
Sbjct:    50 MAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   108 AEYLCQIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 205

GO:0000502 "proteasome complex" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

RGD|735127 Psmd6 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 6" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 76/162 (46%), Positives = 99/162 (61%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W+MD    ++MK ANE+ LK LD  LE  EKN+   E ++     AK
Sbjct:    50 MAPYYEALCKSLDWQMDMDLLSKMKKANEEELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   108 AEYLCQIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 205

GO:0022624 "proteasome accessory complex" evidence=IEA;ISO

UNIPROTKB|F1N903 PSMD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 73/161 (45%), Positives = 99/161 (61%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEHEKNMMDEEDQVSGIWQAKL 58
             MAPYY+ +C+   W++D +   +MK ANE+ LK LD  LE  + ++ E + +     AK 
Sbjct:    59 MAPYYEALCKSLEWQIDTELLNKMKKANEEELKRLDNELEDAEKILGESE-IRDAMMAKA 117

Query:    59 DYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATE 118
             +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T  IEKA  
Sbjct:   118 EYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNIEKAKS 175

Query:   119 LIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
             LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   176 LIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 214

GO:0022624 "proteasome accessory complex" evidence=IEA

UNIPROTKB|F1MXE4 PSMD6 "26S proteasome non-ATPase regulatory subunit 6" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W+MD     +MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:    50 MAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  +  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   108 AEYLCRIGDKEGALT-AFRRTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 205

GO:0022624 "proteasome accessory complex" evidence=IEA

UNIPROTKB|Q3T0B2 PSMD6 "26S proteasome non-ATPase regulatory subunit 6" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W+MD     +MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:    50 MAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  +  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   108 AEYLCRIGDKEGALT-AFRRTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 205

GO:0022624 "proteasome accessory complex" evidence=ISS

UNIPROTKB|C9IZE4 PSMD6 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W++D     +MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:   103 MAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 160

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   161 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 218

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   219 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 258

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|Q15008 PSMD6 "26S proteasome non-ATPase regulatory subunit 6" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W++D     +MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:    50 MAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 107

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   108 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 165

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   166 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 205

GO:0006508 "proteolysis" evidence=NAS

GO:0000502 "proteasome complex" evidence=NAS

GO:0016887 "ATPase activity" evidence=NAS

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=NAS

UNIPROTKB|Q6UV22 PSMD6 "KIAA0107 isoform" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W++D     +MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:    12 MAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 69

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:    70 AEYLCRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 127

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   128 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 167

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|E2RN00 PSMD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 73/162 (45%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+   W++D     +M+ ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:   177 MAPYYEALCKSLDWQLDTDLLNKMRKANEDELKRLDEELEDAEKNL--GESEIRDAMMAK 234

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YLC +GD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   235 AEYLCRVGDKDGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 292

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   293 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 332

GO:0022624 "proteasome accessory complex" evidence=IEA

ZFIN|ZDB-GENE-040426-1038 psmd6 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 6" [Danio rerio (taxid:7955)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 75/162 (46%), Positives = 97/162 (59%)

Query:     1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELD--LEH-EKNMMDEEDQVSGIWQAK 57
             MAPYY+ +C+E  W+ D    ++MK ANE  LK LD  LE  EKN+   E ++     AK
Sbjct:    47 MAPYYETLCKELKWQADTDLLSKMKKANEDELKRLDDVLEDAEKNL--GESEIRDAMMAK 104

Query:    58 LDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117
              +YL  IGD+  A   A  K  DKT    HR+D VF L RI  F+  D   +T   EKA 
Sbjct:   105 AEYLIRIGDKEGALT-AFRKTYDKTVALGHRLDIVFYLLRIGLFY-MDNDLITRNTEKAK 162

Query:   118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159
              LIE   GGDW  RN+LK Y+G+YC+AIR + +AAELF+D +
Sbjct:   163 SLIE--EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTV 202

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0070306 "lens fiber cell differentiation" evidence=IMP

GO:0000502 "proteasome complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
pfam10602	174	pfam10602, RPN7, 26S proteasome subunit RPN7	2e-30
COG5187	412	COG5187, RPN7, 26S proteasome regulatory complex c	6e-29

>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7

 Score =  108 bits (271), Expect = 2e-30
 Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 9/146 (6%)

Query: 17  DEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKL 73
           DE +  E++  NE+ L+ELD E    ++N+  EE  +        ++   IGD   A K 
Sbjct: 1   DEAWVEELRKKNEEELEELDAELKDAKENLGKEE--IRRALLDLAEHYAKIGDLENALK- 57

Query: 74  ADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK 133
           A S+  +      H+ID    L R+  F   D   ++  IEKA  LIE   GGDW  RN+
Sbjct: 58  AYSRAREYCTSLGHKIDMCLNLIRVGIFFN-DWDHVSKYIEKAKSLIE--KGGDWERRNR 114

Query: 134 LKAYEGVYCLAIRQYCRAAELFVDVI 159
           LK YEG+  LAIR +  AA+LF+D +
Sbjct: 115 LKVYEGLALLAIRDFKEAAKLFLDSL 140

RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins. Length = 174

>gnl|CDD|227514 COG5187, RPN7, 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

 Score =  109 bits (273), Expect = 6e-29
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 1   MAPYYKEVCEEFGW-------KMDEKFYTEMKDANEKRLKELDLE-HEKNMMDEEDQVSG 52
           MAP YK + E+          K D      +   NE++++ELD    EK   + E + S 
Sbjct: 57  MAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSE 116

Query: 53  IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAA 112
             +   +Y C I D    F+       D  +    +ID      R+   +G D + +  +
Sbjct: 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS-TGLKIDVFLCKIRLGLIYG-DRKVVEES 174

Query: 113 IEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
           +E A ++IE   GGDW  RN+ K Y+G++ +  R +  AA L  D++ +
Sbjct: 175 LEVADDIIE--KGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0687|consensus	393		100.0
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	100.0
COG5187	412	RPN7 26S proteasome regulatory complex component,	100.0
KOG0686|consensus	466		99.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.63
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.53
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.22
PF12688	120	TPR_5: Tetratrico peptide repeat	96.16
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.39
KOG1840|consensus	508		95.27
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.86
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.54
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.5
PRK11189	296	lipoprotein NlpI; Provisional	94.39
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.27
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.12
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.05
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	93.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	93.69
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	93.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	93.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	93.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	93.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.7
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	92.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.4
PRK10803	263	tol-pal system protein YbgF; Provisional	92.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.87
KOG0548|consensus	539		91.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.19
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	90.59
KOG1497|consensus	399		90.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	89.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	89.67
PRK15359	144	type III secretion system chaperone protein SscB;	89.64
KOG4234|consensus	271		89.51
PF13428	44	TPR_14: Tetratricopeptide repeat	89.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	88.8
KOG1840|consensus	508		88.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	87.33
PRK12370	553	invasion protein regulator; Provisional	87.01
PRK11189	296	lipoprotein NlpI; Provisional	86.58
KOG1173|consensus	611		86.26
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	86.0
PRK12370	553	invasion protein regulator; Provisional	85.9
KOG1070|consensus	1710		85.9
KOG1155|consensus	559		85.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.21
KOG0547|consensus	606		84.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	84.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	83.91
PRK04841	903	transcriptional regulator MalT; Provisional	83.69
KOG2908|consensus	380		83.25
COG1849	90	Uncharacterized protein conserved in archaea [Func	83.0
KOG1125|consensus	579		82.97
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	82.33
KOG1155|consensus	559		82.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	81.29
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	80.79

>KOG0687|consensus

Probab=100.00  E-value=5.5e-56  Score=380.00  Aligned_cols=155  Identities=41%  Similarity=0.760  Sum_probs=154.3

Q ss_pred             CchhHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHh
Q psy398            1 MAPYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSK   77 (162)
Q Consensus         1 m~p~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~   77 (162)
                      |||||+.+|+.+.|++|+.++++|.++|++++++|+++++   +|+|  +.|||+|+..+|+|||+|||+++|+++++++
T Consensus        53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t  130 (393)
T KOG0687|consen   53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKT  130 (393)
T ss_pred             cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   9999  9999999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398           78 FADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus        78 ~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                      + ++++++|||||++|++||+|+|+ +|...|+++|+||+.++|+  |||||||||||||+|||+|++||||+||.||+|
T Consensus       131 ~-~ktvs~g~kiDVvf~~iRlglfy-~D~~lV~~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld  206 (393)
T KOG0687|consen  131 Y-EKTVSLGHKIDVVFYKIRLGLFY-LDHDLVTESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLD  206 (393)
T ss_pred             H-HHHhhcccchhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            9 99999999999999999999999 9999999999999999999  999999999999999999999999999999999


Q ss_pred             hccC
Q psy398          158 VIRS  161 (162)
Q Consensus       158 ~~~T  161 (162)
                      |+||
T Consensus       207 ~vsT  210 (393)
T KOG0687|consen  207 SVST  210 (393)
T ss_pred             Hccc
Confidence            9998

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=100.00  E-value=1.5e-48  Score=310.05  Aligned_cols=139  Identities=37%  Similarity=0.588  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHH
Q psy398           17 DEKFYTEMKDANEKRLKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVF   93 (162)
Q Consensus        17 D~~~~~~~~~~n~~~l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l   93 (162)
                      |++|+++|+++|++++++||.+|+   +|+|  ++|||+|+.++|+||++|||+++|+++|.+++ +||+++||+|||+|
T Consensus         1 D~~w~~~~~~~~~~~~~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l   77 (177)
T PF10602_consen    1 DEEWIEETKAKNAEELEKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCL   77 (177)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHH
Confidence            899999999999999999999999   9999  99999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhccC
Q psy398           94 TLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS  161 (162)
Q Consensus        94 ~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~T  161 (162)
                      ++|||+||+ +||.+|.++|+||+.++++  ||||+|+||||||+||++|.+|+|+.||++||+++||
T Consensus        78 ~~irv~i~~-~d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   78 NVIRVAIFF-GDWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            999999999 9999999999999999999  9999999999999999999999999999999999998

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-43  Score=298.08  Aligned_cols=154  Identities=28%  Similarity=0.457  Sum_probs=150.3

Q ss_pred             CchhHHHHHHhc-------CCCcCHHHHHHHHHHHHHHHHHHHHHHH----hcCCCchHHHHHHHHhhHhHHHhhcCHHH
Q psy398            1 MAPYYKEVCEEF-------GWKMDEKFYTEMKDANEKRLKELDLEHE----KNMMDEEDQVSGIWQAKLDYLCSIGDRAE   69 (162)
Q Consensus         1 m~p~Y~~l~~~~-------~~~~D~~~~~~~~~~n~~~l~~Le~~lk----~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~   69 (162)
                      |||||+++|++.       .+++|..++++|-++|++++++|+++|+    .| |  +.|+.+++..+|+|||+|||+++
T Consensus        57 maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn-g--E~e~~ea~~n~aeyY~qi~D~~n  133 (412)
T COG5187          57 MAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN-G--ETEGSEADRNIAEYYCQIMDIQN  133 (412)
T ss_pred             hhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc-c--chHHHHHHHHHHHHHHHHhhhhh
Confidence            899999999987       4789999999999999999999999998    55 9  99999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHH
Q psy398           70 AFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYC  149 (162)
Q Consensus        70 A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk  149 (162)
                      +++...++. .+.+++|.|||+.|+.||+|+++ +|...|...|++++.++|+  ||||+||||+|+|.|+|+|+.|+|+
T Consensus       134 g~~~~~~~~-~~a~stg~KiDv~l~kiRlg~~y-~d~~vV~e~lE~~~~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFk  209 (412)
T COG5187         134 GFEWMRRLM-RDAMSTGLKIDVFLCKIRLGLIY-GDRKVVEESLEVADDIIEK--GGDWERRNRYKVYKGIFKMMRRNFK  209 (412)
T ss_pred             HHHHHHHHH-HHHHhcccchhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHh--CCCHHhhhhHHHHHHHHHHHHHhhH
Confidence            999999999 99999999999999999999999 9999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHhHhhccC
Q psy398          150 RAAELFVDVIRS  161 (162)
Q Consensus       150 ~AA~lfld~~~T  161 (162)
                      +||.||+|++||
T Consensus       210 eAa~Ll~d~l~t  221 (412)
T COG5187         210 EAAILLSDILPT  221 (412)
T ss_pred             HHHHHHHHHhcc
Confidence            999999999998

>KOG0686|consensus

Probab=99.95  E-value=3.5e-28  Score=213.35  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=133.3

Q ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHH
Q psy398           13 GWKMDEKFYTEMKDANEKRLKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRI   89 (162)
Q Consensus        13 ~~~~D~~~~~~~~~~n~~~l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~ki   89 (162)
                      +.++|++|+++..++...++++|+.+||   +|+|  +||||.|+.|+|+||...|++++|+++|.|+| ||||+.+|.|
T Consensus       111 ~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~i--KEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~R-dYCTs~khvI  187 (466)
T KOG0686|consen  111 GYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLI--KESIRRALEDLGDHYLDCGQLDNALRCYSRAR-DYCTSAKHVI  187 (466)
T ss_pred             ccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHhccHHHHHhhhhhhh-hhhcchHHHH
Confidence            3788999999999999999999999999   9999  99999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhccC
Q psy398           90 DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS  161 (162)
Q Consensus        90 D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~T  161 (162)
                      +||+++|||+|.. +||.||.+++.+|++.++..+..--+--.|++++.||..|..|+|+.||+.||.+..+
T Consensus       188 nm~ln~i~VSI~~-~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~  258 (466)
T KOG0686|consen  188 NMCLNLILVSIYM-GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD  258 (466)
T ss_pred             HHHHHHHHHHHhh-cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999 9999999999999999742001122345899999999999999999999999998765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.63  E-value=0.0057  Score=46.01  Aligned_cols=122  Identities=12%  Similarity=0.052  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc
Q psy398           25 KDANEKRLKELDLEHE-KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG  103 (162)
Q Consensus        25 ~~~n~~~l~~Le~~lk-~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~  103 (162)
                      ...+..++.+.=.++. ++-+  ..--..+.+.+|..+..-||+++|.+.|.... +......-+--+.+.+.+|-+.. 
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~l~~~a~l~LA~~~~~~-   98 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPELKPLARLRLARILLQQ-   98 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHc-
Confidence            3444455554333444 5555  45678899999999999999999999999999 77766666666778888888888 


Q ss_pred             CCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          104 CDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       104 ~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +++....+.+..    +.   +..|.  ....-..|--++..|++.+|-..|-.++
T Consensus        99 ~~~d~Al~~L~~----~~---~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   99 GQYDEALATLQQ----IP---DEAFK--ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CCHHHHHHHHHh----cc---CcchH--HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999888887744    22   34553  3455579999999999999999886653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.13  E-value=0.017  Score=36.31  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..+.+.|+.+.|++.+.++. .......   .+.+.+..+.+.. +++....+.+.++-.+...    +.    
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~----~~----   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKAL-ELDPDNA---DAYYNLAAAYYKL-GKYEEALEDYEKALELDPD----NA----   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHH-hcCCccH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCc----ch----
Confidence            46788999999999999999999988 5544332   4555566666666 7777777777766654321    22    


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......|..++..+++..|...|..++
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344566777788899999998887664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.53  E-value=0.011  Score=39.46  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhh
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS-HRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIE  121 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g-~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e  121 (162)
                      ++-.++..+|..|.+.|+.+.|++.|.+++ +.....| ...++..+...+|..+.  +|+....+++.+|-++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKAL-DIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            456788999999999999999999999988 6542222 22344555555554442  888888888888877654

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.49  E-value=0.074  Score=36.91  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=72.4

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|..+.+.|+++.|.+.|.+.. .........-+..+.+.++.+-. +++....+++.++-..-.   ++....  
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p---~~~~~~--   76 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYP---KSPKAP--   76 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCC---CCCccc--
Confidence            45678999999999999999999988 65544445567888888888888 999999999998877632   122111  


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......|..+...+++.+|.+.|-..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            123344555567888888888876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.22  E-value=0.11  Score=39.01  Aligned_cols=62  Identities=13%  Similarity=0.046  Sum_probs=31.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATE  118 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~  118 (162)
                      .++..+|..|...|+.++|.+.|.++. .......   +..+.+..+.+.. +++....+.+.++-.
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~---~~~~~~~~~~~~~-g~~~~A~~~~~~~~~  127 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNG---DVLNNYGTFLCQQ-GKYEQAMQQFEQAIE  127 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCH---HHHHHHHHHHHHc-ccHHHHHHHHHHHHh
Confidence            345556666666666666666666665 4332211   2333334444444 555555555555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.16  E-value=0.066  Score=40.22  Aligned_cols=101  Identities=16%  Similarity=0.056  Sum_probs=74.7

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|.-+-.-|+-++|+..|+++. ....+.-++....+.+-..---. +........+.++-   ++  -+|-+-..
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~---~~--~p~~~~~~   75 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEAL---EE--FPDDELNA   75 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH---HH--CCCccccH
Confidence            56788889999999999999999999 76655556666555544444444 66666666665553   33  12222367


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      .+++..++.+...+..++|.+.||.+++
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7889999999999999999999998764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.43  E-value=0.36  Score=34.78  Aligned_cols=95  Identities=17%  Similarity=-0.061  Sum_probs=67.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .+...+|..|.+.|+.++|...|.++. ......   .++...+-.+.+-. +++......+.++-.+-.    .+++  
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p----~~~~--   86 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLA-AYDPYN---SRYWLGLAACCQML-KEYEEAIDAYALAAALDP----DDPR--   86 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC----CChH--
Confidence            457789999999999999999999988 543322   24444444444445 777777777777655421    2333  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ...+.|..++..+++.+|.+.|-.++
T Consensus        87 --~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        87 --PYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              44667888889999999999887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.39  E-value=0.095  Score=33.86  Aligned_cols=63  Identities=19%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGC-DIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~-d~~~v~~~i~ka~~l  119 (162)
                      ..+..+|..|.+.||++.|++.|+++. +...+.   .++.+.+-.+-... + ++....+++.+|-++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~---~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNN---AEAYYNLGLAYMKL-GKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTH---HHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHc
Confidence            467889999999999999999999999 766443   34666666666666 7 688888888887654

...

>KOG1840|consensus

Probab=95.27  E-value=1.8  Score=40.08  Aligned_cols=127  Identities=15%  Similarity=0.127  Sum_probs=94.4

Q ss_pred             HHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHHHHHhc
Q psy398           32 LKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFAD-----KTNPKSHRIDAVFTLFRIAYFHG  103 (162)
Q Consensus        32 l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~-----~~~s~g~kiD~~l~~iRv~~f~~  103 (162)
                      +.-++..+.   +.+|-.-..|-..+.++|.-|++.|++++|...+.++. +     +.++.+..--....++-+.--. 
T Consensus       261 v~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al-~I~~~~~~~~~~~v~~~l~~~~~~~~~~-  338 (508)
T KOG1840|consen  261 VNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL-EIYEKLLGASHPEVAAQLSELAAILQSM-  338 (508)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH-HHHHHhhccChHHHHHHHHHHHHHHHHh-
Confidence            333444455   78883345666679999999999999999999998865 3     2344555555555566666566 


Q ss_pred             CCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          104 CDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       104 ~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      +.+..+..+..++-+++...-|.|----++.+.=-|.-+..+|+|++|-++|-.++.
T Consensus       339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            889999999998888876323556556788888888889999999999999988763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.26  E-value=0.4  Score=36.04  Aligned_cols=97  Identities=10%  Similarity=0.031  Sum_probs=66.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|...|+.++|.+.|.++. .... .....+....+..+.+.. +++......+.++-....    .+    
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~----~~----  168 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAI-EDPL-YPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDP----QR----  168 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH-hccc-cccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc----CC----
Confidence            466778899999999999999999988 5322 223345566666677777 888888888888776532    11    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...-...|..+...++|.+|...|-.++
T Consensus       169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~  196 (234)
T TIGR02521       169 PESLLELAELYYLRGQYKDARAYLERYQ  196 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1223345666777888888887776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.26  E-value=0.9  Score=38.37  Aligned_cols=101  Identities=16%  Similarity=-0.034  Sum_probs=58.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|.-|.+.|+.+.|.+.|.++. +...   ........++++.... +++....+.+.++-..-.   ...+..
T Consensus       107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~~---~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~---~~~~~~  178 (389)
T PRK11788        107 LLALQELGQDYLKAGLLDRAEELFLQLV-DEGD---FAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGG---DSLRVE  178 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCc---chHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcC---CcchHH
Confidence            3567778888888888888888888887 5422   2345566666666666 777766666555443211   011111


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...+-...|..++..+++.+|.+.|-.++
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            12222234445556677777766665543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.41  Score=41.31  Aligned_cols=117  Identities=14%  Similarity=0.192  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC-
Q psy398           27 ANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD-  105 (162)
Q Consensus        27 ~n~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d-  105 (162)
                      ..+..+.+|+..|..|-+  +.   .+|.-+|..|...|+...|+.+|.++. .-   .|...|+.+..-++-++. .| 
T Consensus       137 ~~~~l~a~Le~~L~~nP~--d~---egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL---~g~n~~~~~g~aeaL~~~-a~~  206 (287)
T COG4235         137 EMEALIARLETHLQQNPG--DA---EGWDLLGRAYMALGRASDALLAYRNAL-RL---AGDNPEILLGLAEALYYQ-AGQ  206 (287)
T ss_pred             cHHHHHHHHHHHHHhCCC--Cc---hhHHHHHHHHHHhcchhHHHHHHHHHH-Hh---CCCCHHHHHHHHHHHHHh-cCC
Confidence            356667778888888888  63   488899999999999999999999988 32   355678888888887777 44 


Q ss_pred             --HHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHH---hHhhccC
Q psy398          106 --IQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAEL---FVDVIRS  161 (162)
Q Consensus       106 --~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~l---fld~~~T  161 (162)
                        ...+..-+.+|-.+       |-. --|-.-|-|.....+++|++|+..   +|+++|.
T Consensus       207 ~~ta~a~~ll~~al~~-------D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         207 QMTAKARALLRQALAL-------DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             cccHHHHHHHHHHHhc-------CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence              44444444444433       211 234456889999999999999865   5666654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.68  E-value=1.7  Score=34.65  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC-
Q psy398           27 ANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD-  105 (162)
Q Consensus        27 ~n~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d-  105 (162)
                      ..++.+..|+..++.|-.  +.   ++|..+|..|...|+.+.|+.+|.+++ .....   ..++.+.+-.+-++..++ 
T Consensus        54 ~~~~~i~~l~~~L~~~P~--~~---~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l~P~---~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQ--NS---EQWALLGEYYLWRNDYDNALLAYRQAL-QLRGE---NAELYAALATVLYYQAGQH  124 (198)
T ss_pred             hHHHHHHHHHHHHHHCCC--CH---HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHhcCCC
Confidence            345666777777776555  43   489999999999999999999999998 43322   234444444433223133 


Q ss_pred             -HHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          106 -IQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       106 -~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......+.+|-.+-    ..+.    ......|+.++..++|.+|...|-..+
T Consensus       125 ~~~~A~~~l~~al~~d----P~~~----~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        125 MTPQTREMIDKALALD----ANEV----TALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             CcHHHHHHHHHHHHhC----CCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             367777777776652    1232    344567888999999999998886543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.54  E-value=0.057  Score=31.65  Aligned_cols=26  Identities=12%  Similarity=0.068  Sum_probs=22.6

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      ++..+|+.|.+.||.++|+++|.+++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999955

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.50  E-value=0.77  Score=38.80  Aligned_cols=94  Identities=13%  Similarity=-0.055  Sum_probs=48.5

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..|++.|+.++|.+.|.++. +..  +....+....++.+..-. +++....+.+.++...-     .+    +
T Consensus       216 ~~~~la~~~~~~g~~~~A~~~~~~~~-~~~--p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~-----p~----~  282 (389)
T PRK11788        216 ASILLGDLALAQGDYAAAIEALERVE-EQD--PEYLSEVLPKLMECYQAL-GDEAEGLEFLRRALEEY-----PG----A  282 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HHC--hhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-----CC----c
Confidence            44455566666666666666666655 321  122233333444444444 55555555555554431     11    1


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..-...|-.++..+++.+|..+|-+.+
T Consensus       283 ~~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        283 DLLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            111445566667778888877776554

>PRK11189 lipoprotein NlpI; Provisional

Probab=94.39  E-value=2.6  Score=35.45  Aligned_cols=86  Identities=17%  Similarity=0.060  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHH-hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy398           27 ANEKRLKELDLEHE-KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD  105 (162)
Q Consensus        27 ~n~~~l~~Le~~lk-~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d  105 (162)
                      ..+..+.++..-|. ..+.  ++.--..+..+|..|.+.|+.+.|...|.++. ......   .+..+.+-.+.... ++
T Consensus        41 ~~e~~i~~~~~~l~~~~~~--~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al-~l~P~~---~~a~~~lg~~~~~~-g~  113 (296)
T PRK11189         41 QQEVILARLNQILASRDLT--DEERAQLHYERGVLYDSLGLRALARNDFSQAL-ALRPDM---ADAYNYLGIYLTQA-GN  113 (296)
T ss_pred             HHHHHHHHHHHHHccccCC--cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHC-CC
Confidence            34445555555554 2333  33334456666666666666666666666665 332221   23344444444444 56


Q ss_pred             HHHHHHHHHHHHhh
Q psy398          106 IQAMTAAIEKATEL  119 (162)
Q Consensus       106 ~~~v~~~i~ka~~l  119 (162)
                      +........+|-.+
T Consensus       114 ~~~A~~~~~~Al~l  127 (296)
T PRK11189        114 FDAAYEAFDSVLEL  127 (296)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66555555555443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.27  E-value=0.93  Score=34.77  Aligned_cols=67  Identities=13%  Similarity=0.042  Sum_probs=52.7

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ...+..+|..|.+.|+.++|+..|.++. .............+.+..+.... +++......+.+|-..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  101 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            4467899999999999999999999988 54433333456677777777777 9999999988888776

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.12  E-value=2.3  Score=33.61  Aligned_cols=124  Identities=19%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc-----CCH
Q psy398           32 LKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG-----CDI  106 (162)
Q Consensus        32 l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~-----~d~  106 (162)
                      +..++.-++.+..  ......++..+|.-|.+.|+.+.|+..|.+.. ..........+. +..+-.+.+.-     .+.
T Consensus        53 ~~~~~~~~~~~p~--~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~a-~~~~g~~~~~~~~~~~~~~  128 (235)
T TIGR03302        53 IKYFEALESRYPF--SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI-RLHPNHPDADYA-YYLRGLSNYNQIDRVDRDQ  128 (235)
T ss_pred             HHHHHHHHHhCCC--chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCchHHH-HHHHHHHHHHhcccccCCH
Confidence            4444444444444  45567889999999999999999999999998 555443333222 22222222210     111


Q ss_pred             HHHHHHHHHHHhhhhh-cCCC-chhhhhHH----------HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          107 QAMTAAIEKATELIEG-ISGG-DWSARNKL----------KAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       107 ~~v~~~i~ka~~l~e~-~~gg-DW~rrnrL----------Kvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......+.-.+..++. |... -|.-..++          ....|-.++..|+|.+|...|-..+
T Consensus       129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  193 (235)
T TIGR03302       129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV  193 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            2233333333333333 1111 12211111          1245677788899999888776543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.05  E-value=0.57  Score=39.16  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhhhhcCC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIA--YFHGCDIQAMTAAIEKATELIEGISG  125 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~--~f~~~d~~~v~~~i~ka~~l~e~~~g  125 (162)
                      ++..+.+..-|.-|-.-|+.++|.++|.++- +-....+..-+..-+....+  +.. .|+..+.+++.+|-.+.-+  .
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa-~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~--~  107 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAA-DCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYRE--A  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH-HHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHh--c
Confidence            6778888889999999999999999999975 43333344444443333333  344 6888889999999998777  8


Q ss_pred             CchhhhhHHHHHHHHHHhhh-hcHHHHHHHhHhhc
Q psy398          126 GDWSARNKLKAYEGVYCLAI-RQYCRAAELFVDVI  159 (162)
Q Consensus       126 gDW~rrnrLKvy~gl~~l~~-R~fk~AA~lfld~~  159 (162)
                      |++.+-.+...--|-.+-.. +++..|.++|-.++
T Consensus       108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~  142 (282)
T PF14938_consen  108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA  142 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            89998888887777777777 88888888776553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=93.98  E-value=0.81  Score=41.54  Aligned_cols=95  Identities=13%  Similarity=0.060  Sum_probs=61.9

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++.-+|..+...|+.+.|.+.|.++. +.....   .+..+.++.+.+.. +++......+.++......    +.   
T Consensus       194 ~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~p~~---~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~----~~---  261 (899)
T TIGR02917       194 DALLLKGDLLLSLGNIELALAAYRKAI-ALRPNN---PAVLLALATILIEA-GEFEEAEKHADALLKKAPN----SP---  261 (899)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC----Cc---
Confidence            456677888888888888888888887 544332   34566777777777 8888888777776654221    11   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       ....+.|+..+..++|.+|...|-.++
T Consensus       262 -~~~~~~~~~~~~~~~~~~A~~~~~~~l  288 (899)
T TIGR02917       262 -LAHYLKALVDFQKKNYEDARETLQDAL  288 (899)
T ss_pred             -hHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             122345555666666666666665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=93.69  E-value=0.62  Score=42.28  Aligned_cols=97  Identities=19%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|.-|++.|+.++|...|.++. ......   .+....+.++.... +++..+...+.++.       +.++..
T Consensus        56 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-g~~~~a~~~~~~~~-------~~~~~~  123 (899)
T TIGR02917        56 AEARFLLGKIYLALGDYAAAEKELRKAL-SLGYPK---NQVLPLLARAYLLQ-GKFQQVLDELPGKT-------LLDDEG  123 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCh---hhhHHHHHHHHHHC-CCHHHHHHhhcccc-------cCCchh
Confidence            4678889999999999999999999998 544433   34556666777777 77766655544321       123444


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ........|..+...++|.+|.+.|-.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  152 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQAL  152 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55666677777777777777777775543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.55  E-value=0.7  Score=29.43  Aligned_cols=59  Identities=27%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             hhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           56 AKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        56 ~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+|..|.+.|+++.|.++|.+++ ..-   ..-.++.+.+-++.+.. +++......+.++-..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l-~~~---P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQAL-KQD---PDNPEAWYLLGRILYQQ-GRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHH-CCS---TTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHH-HHC---CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            57899999999999999999999 544   33778888999999888 9999988888887554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=93.52  E-value=2.1  Score=39.45  Aligned_cols=60  Identities=10%  Similarity=0.164  Sum_probs=24.7

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATE  118 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~  118 (162)
                      +..+|..|...|++++|+..|.+++ +....   -.++.+++-.+.+.. +++........+|-.
T Consensus       368 ~~~la~~~~~~g~~~eA~~~~~~al-~~~p~---~~~~~~~lg~~~~~~-g~~~~A~~~~~kal~  427 (615)
T TIGR00990       368 YIKRASMNLELGDPDKAEEDFDKAL-KLNSE---DPDIYYHRAQLHFIK-GEFAQAGKDYQKSID  427 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            3344444444444444444444444 22111   123344444444444 444444444444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=93.46  E-value=4.5  Score=37.48  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      .+.+.+++.-+|.||-.+|+++.|++...+++ +.|.|.   +|+.+...||---. ||+......++.|+.| |   ..
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~htPt~---~ely~~KarilKh~-G~~~~Aa~~~~~Ar~L-D---~~  260 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EHTPTL---VELYMTKARILKHA-GDLKEAAEAMDEAREL-D---LA  260 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhC-C---hh
Confidence            46678899999999999999999999999999 888664   89999999999888 9999999999999998 3   23


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                      |  |-  +-.=.+=|+|-.+++++|-+.+
T Consensus       261 D--Ry--iNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  261 D--RY--INSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             h--HH--HHHHHHHHHHHCCCHHHHHHHH
Confidence            4  21  1222345677777887776543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=93.39  E-value=2.6  Score=32.02  Aligned_cols=103  Identities=13%  Similarity=-0.083  Sum_probs=66.6

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      ..-...+..+|..+...|+.+.|+..|.+++ .....+.....+...+-.+.... +++........+|-.+...  -+ 
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~--~~-  106 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPF--LP-  106 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC--cH-
Confidence            3446677889999999999999999999998 55433222333555555566666 8999999999888876332  22 


Q ss_pred             hhhhhHHHHHH--HHHHhhhhcHHHHHHHh
Q psy398          128 WSARNKLKAYE--GVYCLAIRQYCRAAELF  155 (162)
Q Consensus       128 W~rrnrLKvy~--gl~~l~~R~fk~AA~lf  155 (162)
                      ....|.-.+|.  |-..+..++|..|-..|
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~  136 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWF  136 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence            22345445544  43444566665443333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=93.16  E-value=1.1  Score=30.91  Aligned_cols=70  Identities=14%  Similarity=-0.020  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .....++..+|.-|.+.|+.+.|.+.|.+.. ..........++.+.+.++.... +++......+.++-..
T Consensus        36 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        36 TYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-KKYPKSPKAPDALLKLGMSLQEL-GDKEKAKATLQQVIKR  105 (119)
T ss_pred             cccHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHCCCCCcccHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence            3345678889999999999999999999988 54433334456777777777778 9999888888887766

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=93.05  E-value=3  Score=38.43  Aligned_cols=99  Identities=11%  Similarity=0.084  Sum_probs=69.5

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      ...-.++..+|.+|...|+.+.|++.|.+++ +....   ..+..+.+..+.+.. +++......+.+|-.+-    ..+
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l~P~---~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~----p~~  398 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSI-ELDPR---VTQSYIKRASMNLEL-GDPDKAEEDFDKALKLN----SED  398 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC----CCC
Confidence            4455788999999999999999999999998 54332   123445555566667 89999999998885542    112


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .    ..-...|..++..++|.+|...|-.++
T Consensus       399 ~----~~~~~lg~~~~~~g~~~~A~~~~~kal  426 (615)
T TIGR00990       399 P----DIYYHRAQLHFIKGEFAQAGKDYQKSI  426 (615)
T ss_pred             H----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2    233455666777788888777775554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.77  E-value=1.8  Score=37.65  Aligned_cols=92  Identities=17%  Similarity=0.087  Sum_probs=57.4

Q ss_pred             HhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHH
Q psy398           55 QAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKL  134 (162)
Q Consensus        55 ~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrL  134 (162)
                      ...|.-...-|+++.|++.|.+++ ......   .+..+.+-.+.+.. +++......+.+|-.+-     .+.   ...
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al-~~~P~~---~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~-----P~~---~~a   72 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAI-DLDPNN---AELYADRAQANIKL-GNFTEAVADANKAIELD-----PSL---AKA   72 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-----cCC---HHH
Confidence            456777777788888888888877 433322   23445555555556 77777777777776652     121   112


Q ss_pred             HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          135 KAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       135 Kvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ....|+.++..++|.+|...|-.++
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            2334777777888888887776554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.70  E-value=2  Score=35.88  Aligned_cols=109  Identities=16%  Similarity=0.111  Sum_probs=75.4

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhhhhc
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG---CDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~---~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ..+.-.++..-+..|-+. +.+.|+++|.++. +--...|.---..-...++|-.+-   +|+.....+..+|-.+.+. 
T Consensus        71 ~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~-~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~-  147 (282)
T PF14938_consen   71 KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI-EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ-  147 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH-HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-
Confidence            455566677777777666 9999999999988 655555555555666666776662   3678888888899999876 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .+.....+....--|-.++..++|.+|.++|-...
T Consensus       148 -e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  148 -EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             55544455555555666777889999999986543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=92.55  E-value=0.96  Score=30.51  Aligned_cols=82  Identities=11%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHh
Q psy398           64 IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCL  143 (162)
Q Consensus        64 iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l  143 (162)
                      -|++++|+..|.+.. +...+.. .-+..+.+.++.+-. +++..+...+.+ ... +   +.    ........|-.++
T Consensus         2 ~~~y~~Ai~~~~k~~-~~~~~~~-~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~-~---~~----~~~~~~l~a~~~~   69 (84)
T PF12895_consen    2 QGNYENAIKYYEKLL-ELDPTNP-NSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKL-D---PS----NPDIHYLLARCLL   69 (84)
T ss_dssp             TT-HHHHHHHHHHHH-HHHCGTH-HHHHHHHHHHHHHHT-THHHHHHHHHHC-HTH-H---HC----HHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH-HHCCCCh-hHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCC-C---CC----CHHHHHHHHHHHH
Confidence            478999999999998 5444322 666778788888888 999888888877 221 1   11    1244445588999


Q ss_pred             hhhcHHHHHHHhHh
Q psy398          144 AIRQYCRAAELFVD  157 (162)
Q Consensus       144 ~~R~fk~AA~lfld  157 (162)
                      ..++|.+|-+.|-.
T Consensus        70 ~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   70 KLGKYEEAIKALEK   83 (84)
T ss_dssp             HTT-HHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhc
Confidence            99999999988753

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.40  E-value=0.28  Score=27.45  Aligned_cols=27  Identities=15%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|.+.||.++|.+.|.+++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            357889999999999999999999987

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=92.16  E-value=1.3  Score=37.34  Aligned_cols=88  Identities=11%  Similarity=-0.027  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHH
Q psy398           28 NEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQ  107 (162)
Q Consensus        28 n~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~  107 (162)
                      ..+-+..++.=++..-.  ......++..+|..|...||++.|+..|.+.. ..-..+...-|..+.+..+.... +|+.
T Consensus       159 y~~Ai~af~~fl~~yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv-~~yP~s~~~~dAl~klg~~~~~~-g~~~  234 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVV-KNYPKSPKAADAMFKVGVIMQDK-GDTA  234 (263)
T ss_pred             HHHHHHHHHHHHHHCcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCcchhHHHHHHHHHHHHc-CCHH
Confidence            44445556555554444  44557889999999999999999999999999 65566678889999988888888 8988


Q ss_pred             HHHHHHHHHHhh
Q psy398          108 AMTAAIEKATEL  119 (162)
Q Consensus       108 ~v~~~i~ka~~l  119 (162)
                      ...+.+.++-..
T Consensus       235 ~A~~~~~~vi~~  246 (263)
T PRK10803        235 KAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHH
Confidence            888888766443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.94  E-value=0.32  Score=26.99  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=23.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|.+.|++++|.++|.+++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            357889999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.87  E-value=1.5  Score=27.08  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATE  118 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~  118 (162)
                      .++..+|..|...|+.+.|.+.|.++. .......   ++.+.+..+.+.. +++......+.++..
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~-~~~~~a~~~~~~~~~   96 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKAL-ELDPDNA---KAYYNLGLAYYKL-GKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcch---hHHHHHHHHHHHH-HhHHHHHHHHHHHHc
Confidence            678899999999999999999999988 5443332   5566666666666 777777777666544

>KOG0548|consensus

Probab=91.49  E-value=6.5  Score=36.75  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             HhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           55 QAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        55 ~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      ...|.=+.+-||+.+|++.|+++. ... ....--=.-.++.++++        .+...|.-|+..++.  ...|.   |
T Consensus       362 r~kGne~Fk~gdy~~Av~~YteAI-kr~P~Da~lYsNRAac~~kL~--------~~~~aL~Da~~~ieL--~p~~~---k  427 (539)
T KOG0548|consen  362 REKGNEAFKKGDYPEAVKHYTEAI-KRDPEDARLYSNRAACYLKLG--------EYPEALKDAKKCIEL--DPNFI---K  427 (539)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhc--CchHH---H
Confidence            456999999999999999999998 444 22222223445555554        233444447777775  44544   4


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .-.+.|..+-+.++|.+|.+.|-+.+
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567999999999999999987654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.19  E-value=0.42  Score=26.81  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=24.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|.-|...|+.+.|+++|++++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            468899999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=90.59  E-value=3.5  Score=39.37  Aligned_cols=96  Identities=13%  Similarity=-0.058  Sum_probs=77.7

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++.-+|..+...|++++|.+.+.++. ......   .++.+.+..+-.-. ++.....+.+.+|..+-     .|   
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al-~~~P~n---~~l~~~lA~l~~~~-g~~~~A~~~l~~al~l~-----Pd---  425 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELA-YNAPGN---QGLRIDYASVLQAR-GWPRAAENELKKAEVLE-----PR---  425 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhC-----CC---
Confidence            4567789999999999999999999988 544332   57888888888888 99999999998888762     22   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...+.+..|+..+..++|.+|-.++=+.+
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            23488999999999999999988875543

>KOG1497|consensus

Probab=90.27  E-value=7  Score=34.88  Aligned_cols=108  Identities=15%  Similarity=0.052  Sum_probs=89.8

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      ++.+--....+|.-|.+-++...|..+..-.- -.+    ...+.|+-.|+.+-|+.+.- +|......+|.+|.-++-.
T Consensus        99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~-~~tg~~~~d~~~kl~l~iriarlyLe~-~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen   99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGIP-LDTGQKAYDVEQKLLLCIRIARLYLED-DDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC-cccchhhhhhHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhhc
Confidence            56666677899999999999999998887654 332    56788999999999999999 9999999999999998765


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                        ....+-.--+||..+=.+=..|+|-+||+.+.+.
T Consensus       177 --~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel  210 (399)
T KOG1497|consen  177 --SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL  210 (399)
T ss_pred             --ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4556667788998888888899999999987653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.96  E-value=0.43  Score=26.16  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=24.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      +|+..+|.-|.+.|+.++|.+.|.+..
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~   27 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLI   27 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            477889999999999999999999987

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=89.79  E-value=5.4  Score=33.24  Aligned_cols=99  Identities=12%  Similarity=-0.022  Sum_probs=68.7

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..+...|+++.|.+.+++++ ......   ......+-.+-... ++++.....+.++-.+...    +.+.
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al-~~~p~~---~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~----~~~~  184 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRAL-ELNPDD---AWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDC----SSML  184 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCC----Ccch
Confidence            3455567888899999999999999988 554333   23445556666677 8888888888887765431    1122


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      .-..-...|..++..|++.+|...|=..
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2223345788889999999998887554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.78  E-value=0.64  Score=26.64  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=24.2

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      -.++..+|..|...|++++|.+.+.+++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            3567899999999999999999999977

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=89.67  E-value=8.6  Score=30.28  Aligned_cols=68  Identities=18%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      -+.+..+|.-|.+.|+.+.|...|.+.. ..-......-+..+.+-.+-+.. +++....+...++-..-
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLH  100 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC
Confidence            4467899999999999999999999988 54444445556667777777777 89999888888887653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=89.64  E-value=7.1  Score=29.29  Aligned_cols=93  Identities=15%  Similarity=-0.095  Sum_probs=68.0

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      +..+|.-+.+.|+++.|.+.|.++. .....   ..+..+.+-.+..-. +++........+|-.+-    .++    ..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~---~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al~l~----p~~----~~   93 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLV-MAQPW---SWRAHIALAGTWMML-KEYTTAINFYGHALMLD----ASH----PE   93 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---cHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC----CCC----cH
Confidence            4467888899999999999999988 54433   235556666666666 88888888888887762    122    22


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ....-|+.+...|++.+|.+.|-.++
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566888888999999999887664

>KOG4234|consensus

Probab=89.51  E-value=8.4  Score=32.56  Aligned_cols=94  Identities=22%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhcCCCchHHH----HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy398           30 KRLKELDLEHEKNMMDEEDQV----SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD  105 (162)
Q Consensus        30 ~~l~~Le~~lk~Nlg~~~~eI----r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d  105 (162)
                      .+.++|-++++.++.+|+.+-    .+-+..-|+-++.-||+++|...|..++ +-|.++..+.--++..=|-+-+.  -
T Consensus        70 l~eEeLmae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Al-e~cp~~~~e~rsIly~Nraaa~i--K  146 (271)
T KOG4234|consen   70 LKEEELMAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEAL-ESCPSTSTEERSILYSNRAAALI--K  146 (271)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH-HhCccccHHHHHHHHhhhHHHHH--H
Confidence            344567777776666322221    2234456788999999999999999999 99999988887666666655554  2


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCch
Q psy398          106 IQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus       106 ~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      ...-...|+-+...|+-  +.-.
T Consensus       147 l~k~e~aI~dcsKaiel--~pty  167 (271)
T KOG4234|consen  147 LRKWESAIEDCSKAIEL--NPTY  167 (271)
T ss_pred             hhhHHHHHHHHHhhHhc--Cchh
Confidence            33334455555555665  4444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.46  E-value=0.64  Score=28.06  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=25.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|.+.|+.+.|.++|++++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l   28 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRAL   28 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            367889999999999999999999988

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=88.80  E-value=4.3  Score=40.55  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|+.|.+.|++++|+++|.++. .....   -.|..+.+.++-+-. +++....+.+.++-..-    ..+-..  
T Consensus       605 ~~~~La~~~~~~g~~~~A~~~y~~al-~~~P~---~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~----p~~~~~--  673 (1157)
T PRK11447        605 IDLTLADWAQQRGDYAAARAAYQRVL-TREPG---NADARLGLIEVDIAQ-GDLAAARAQLAKLPATA----NDSLNT--  673 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccC----CCChHH--
Confidence            45679999999999999999999998 54332   357888889988888 99998888888665431    111111  


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ....|..+...+++.+|.++|-..+
T Consensus       674 --~~~la~~~~~~g~~~eA~~~~~~al  698 (1157)
T PRK11447        674 --QRRVALAWAALGDTAAAQRTFNRLI  698 (1157)
T ss_pred             --HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence              1223555567788888887776554

>KOG1840|consensus

Probab=88.76  E-value=7.9  Score=35.95  Aligned_cols=118  Identities=14%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHH-HHHHHhc--CCHHHHHHHHHHHH
Q psy398           41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLF-RIAYFHG--CDIQAMTAAIEKAT  117 (162)
Q Consensus        41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~i-Rv~~f~~--~d~~~v~~~i~ka~  117 (162)
                      .+.+++.-.+......+|.-|...|++++|...+..+...-+-+.|++.=.+=..+ -+|+++.  +.+.......++|=
T Consensus       189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44454466777777779999999999999999999987343334443322222222 2455442  56666666667776


Q ss_pred             hhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       118 ~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      +..+..=|.+-.+..=.-.=-|+.+..+|+|++|..++-.+
T Consensus       269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            66665446666554333333355568899999999887654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=87.33  E-value=2.2  Score=34.94  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      ..+...|.++.+.|+.++|+++|.+++ +......   ++...++.+-+.. ++...+...+.........  ..+    
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al-~~~P~~~---~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~--~~~----  215 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKAL-ELDPDDP---DARNALAWLLIDM-GDYDEAREALKRLLKAAPD--DPD----  215 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH-HH-TT-H---HHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HT--SCC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCH---HHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcC--HHH----
Confidence            457889999999999999999999999 5443322   3444555566666 7888877778777776532  222    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        +-..-|..++..+++++|-..|-.++
T Consensus       216 --~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  216 --LWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             --HCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHhccccccccccccccccc
Confidence              22344778888899999998886654

>PRK12370 invasion protein regulator; Provisional

Probab=87.01  E-value=9.4  Score=35.01  Aligned_cols=63  Identities=6%  Similarity=-0.126  Sum_probs=40.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-+...|+.++|.++|.+++ +.....-   +..+.+-.+.+.. +++......+++|-.+
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~---~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQAN-LLSPISA---DIKYYYGWNLFMA-GQLEEALQTINECLKL  401 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCH---HHHHHHHHHHHHC-CCHHHHHHHHHHHHhc
Confidence            355667777777778888888887777 4433221   2344455555566 7777777777776665

>PRK11189 lipoprotein NlpI; Provisional

Probab=86.58  E-value=14  Score=31.04  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             HHHHHHHhhhhcHHHHHHHhHhhccC
Q psy398          136 AYEGVYCLAIRQYCRAAELFVDVIRS  161 (162)
Q Consensus       136 vy~gl~~l~~R~fk~AA~lfld~~~T  161 (162)
                      .|.|..+...+++.+|...|-.++++
T Consensus       240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        240 FYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            36688899999999999999776654

>KOG1173|consensus

Probab=86.26  E-value=2.8  Score=39.48  Aligned_cols=89  Identities=22%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhhhhcCCC
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADS--KFADKTNPKSHRIDAVFTLFRIAYFHG----CDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~--~~~~~~~s~g~kiD~~l~~iRv~~f~~----~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      .|...|-||..||..++|.+.|++  +. |.+-+++          .|||=+.    +..+...+....|-.++.   |.
T Consensus       314 sW~aVg~YYl~i~k~seARry~SKat~l-D~~fgpa----------Wl~fghsfa~e~EhdQAmaaY~tAarl~~---G~  379 (611)
T KOG1173|consen  314 SWFAVGCYYLMIGKYSEARRYFSKATTL-DPTFGPA----------WLAFGHSFAGEGEHDQAMAAYFTAARLMP---GC  379 (611)
T ss_pred             chhhHHHHHHHhcCcHHHHHHHHHHhhc-CccccHH----------HHHHhHHhhhcchHHHHHHHHHHHHHhcc---CC
Confidence            589999999999999999999998  44 4554443          4554332    566777777888888876   43


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      .     ....|-|+-++.+.+++-|.+.|..+++
T Consensus       380 h-----lP~LYlgmey~~t~n~kLAe~Ff~~A~a  408 (611)
T KOG1173|consen  380 H-----LPSLYLGMEYMRTNNLKLAEKFFKQALA  408 (611)
T ss_pred             c-----chHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            3     5678999999999999999999988764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=86.00  E-value=9.3  Score=38.26  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=64.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH--HH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS--HR---------IDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g--~k---------iD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      +++..+|..|.+.|+.++|...|+++. .......  .+         ..+.+..-.+.+.. +++......+.+|-.+-
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al-~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKAL-ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQVD  381 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC
Confidence            567889999999999999999999988 5443221  11         12223333444556 78888877777777652


Q ss_pred             hhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          121 EGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       121 e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          ..+-.    .....|-.++..++|.+|.+.|-.++
T Consensus       382 ----P~~~~----a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        382 ----NTDSY----AVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             ----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                11211    22234667777888888888887655

>PRK12370 invasion protein regulator; Provisional

Probab=85.90  E-value=11  Score=34.46  Aligned_cols=96  Identities=15%  Similarity=0.047  Sum_probs=61.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|...|+.++|+..|.++. .-.....   ...+....+.+.. +++......+.++-....   .++..  
T Consensus       373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~---~~~~~~~~~~~~~-g~~eeA~~~~~~~l~~~~---p~~~~--  442 (553)
T PRK12370        373 DIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRA---AAGITKLWITYYH-TGIDDAIRLGDELRSQHL---QDNPI--  442 (553)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCh---hhHHHHHHHHHhc-cCHHHHHHHHHHHHHhcc---ccCHH--
Confidence            367889999999999999999999988 4433311   1122233345556 676655555554433211   11222  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ...+.|..+...|++.+|...|....
T Consensus       443 --~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        443 --LLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             --HHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence              34567888888999999998876543

>KOG1070|consensus

Probab=85.90  E-value=7.1  Score=40.60  Aligned_cols=66  Identities=12%  Similarity=0.283  Sum_probs=59.3

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTN---PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      -|...=-|+.+++|.++|.+...+++  +|.   -.--++.+|.+.+-+-.+| ++-..+++-+++|-+.++
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL--~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERAL--KTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQYCD 1528 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHh--hhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHhcc
Confidence            46677789999999999999999999  666   5567999999999999999 999999999999999876

>KOG1155|consensus

Probab=85.27  E-value=14  Score=34.39  Aligned_cols=93  Identities=19%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -|..+|+=|.+++.+++|.+||.+++ .-.-+.|.   +   +.|+|=.+-  +|......+.+|-=...+. .|.--+.
T Consensus       434 lw~aLG~CY~kl~~~~eAiKCykrai-~~~dte~~---~---l~~LakLye~l~d~~eAa~~yek~v~~~~~-eg~~~~~  505 (559)
T KOG1155|consen  434 LWVALGECYEKLNRLEEAIKCYKRAI-LLGDTEGS---A---LVRLAKLYEELKDLNEAAQYYEKYVEVSEL-EGEIDDE  505 (559)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-hccccchH---H---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hcccchH
Confidence            46788888888888888888888888 44433332   2   344443331  4444444444444333221 0222223


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHH
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAE  153 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~  153 (162)
                      --+-.++-+.|..-..||.+|..
T Consensus       506 t~ka~~fLA~~f~k~~~~~~As~  528 (559)
T KOG1155|consen  506 TIKARLFLAEYFKKMKDFDEASY  528 (559)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHH
Confidence            44455567888888888888865

>smart00028 TPR Tetratricopeptide repeats

Probab=85.21  E-value=2.1  Score=21.36  Aligned_cols=27  Identities=15%  Similarity=0.140  Sum_probs=24.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|...|+.+.|..+|.++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            356789999999999999999999987

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0547|consensus

Probab=84.65  E-value=6.2  Score=37.00  Aligned_cols=78  Identities=19%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh--
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFR-IAYFHGCDIQAMTAAIEKATELIEGISGGDWS--  129 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iR-v~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~--  129 (162)
                      ++..+|+.|++-|.+++|+++|+.++ +.|..-     -+|..=| -++...+||+.|.+--++|=.+     ..|..  
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI-~l~p~e-----piFYsNraAcY~~lgd~~~Vied~TkALEl-----~P~Y~KA  185 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAI-ELCPDE-----PIFYSNRAACYESLGDWEKVIEDCTKALEL-----NPDYVKA  185 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHH-hcCCCC-----chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----CcHHHHH
Confidence            46789999999999999999999999 888763     2233333 2333227888888877777665     34443  


Q ss_pred             hhhHHHHHHHHH
Q psy398          130 ARNKLKAYEGVY  141 (162)
Q Consensus       130 rrnrLKvy~gl~  141 (162)
                      .--|-+++++|-
T Consensus       186 l~RRA~A~E~lg  197 (606)
T KOG0547|consen  186 LLRRASAHEQLG  197 (606)
T ss_pred             HHHHHHHHHhhc
Confidence            123455677663

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=84.00  E-value=3.6  Score=28.88  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             HhhcCHHHHHHHHHHhcCCCCCChHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           62 CSIGDRAEAFKLADSKFADKTNPKSHRI------DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        62 ~~iGD~~~A~~ay~~~~~~~~~s~g~ki------D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .+.||+..|++...+.+ |.+...+..-      =..+++.++-..+ +++......+..|=.+..+  -+|
T Consensus         9 ~~~~dy~~A~d~L~~~f-D~~~~~~~~~~~~~~~~all~lA~~~~~~-G~~~~A~~~l~eAi~~Are--~~D   76 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYF-DYAKQSNNSSSNSGLAYALLNLAELHRRF-GHYEEALQALEEAIRLARE--NGD   76 (94)
T ss_pred             HHcCCHHHHHHHHHHHH-HHHhhcccchhhHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH--HCC
Confidence            46899999999999999 8876555433      2456677777778 9999999999888888776  566

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=83.91  E-value=4  Score=27.37  Aligned_cols=59  Identities=20%  Similarity=0.144  Sum_probs=44.9

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA  116 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka  116 (162)
                      ..+..+|.=|++.|++++|++.+.+ . ....  + -.++.+.+-|..+.. +++....+.+++|
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~--~-~~~~~~l~a~~~~~l-~~y~eAi~~l~~~   84 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-L-KLDP--S-NPDIHYLLARCLLKL-GKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-H-THHH--C-HHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCC--C-CHHHHHHHHHHHHHh-CCHHHHHHHHhcC
Confidence            3566789999999999999999987 4 2211  1 256666778888888 9999998888875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=83.69  E-value=14  Score=35.27  Aligned_cols=104  Identities=13%  Similarity=-0.009  Sum_probs=71.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH---RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~---kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      .+...+|..+...||.+.|...+.++. ......|.   .+-....+-.+.+.. +++......+.++-.+.+.  .|..
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al-~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~--~~~~  567 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTE-QMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEE--QHLE  567 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH--hccc
Confidence            456678888899999999999999877 54333332   333444555666777 9999999999999988775  3321


Q ss_pred             h--hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          129 S--ARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       129 ~--rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .  ...-+....|......+++.+|..++-.++
T Consensus       568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            1  123334456766777889988887776654

>KOG2908|consensus

Probab=83.25  E-value=13  Score=33.25  Aligned_cols=93  Identities=12%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             HHHhhcCHHHHHHHHHHhcCCCCCChH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398           60 YLCSIGDRAEAFKLADSKFADKTNPKS---HRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA  136 (162)
Q Consensus        60 ~~~~iGD~~~A~~ay~~~~~~~~~s~g---~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv  136 (162)
                      +.-+++|+++|++..+++. ++....+   .++=+...+.|+-+.. +|.+.+++.|...++.+|...|-+---++++--
T Consensus        84 ~~~~~~D~~~al~~Le~i~-~~~~~~~e~~av~~~~t~~~r~~L~i-~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~  161 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKII-EKLKEYKEPDAVIYILTEIARLKLEI-NDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS  161 (380)
T ss_pred             HHHHhccHHHHHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence            3457889999999999988 6654443   4666677788888888 999999999999999998755555545677766


Q ss_pred             HHHHHHhhhhcHHHHHHH
Q psy398          137 YEGVYCLAIRQYCRAAEL  154 (162)
Q Consensus       137 y~gl~~l~~R~fk~AA~l  154 (162)
                      -..-|+=.+|||..+=+.
T Consensus       162 lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  162 LSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHhHHHHHHH
Confidence            677777788888766443

>COG1849 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.00  E-value=7  Score=28.31  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH-----hc---CCCchHHHHHH--HHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           22 TEMKDANEKRLKELDLEHE-----KN---MMDEEDQVSGI--WQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        22 ~~~~~~n~~~l~~Le~~lk-----~N---lg~~~~eIr~~--~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      +.+.++-++=++.|++.|+     .+   .+  +.-+.|+  +..=|.||..-||+.+|+.|.+=+.
T Consensus         4 ~~l~ekiekYi~~leeaL~~~k~~~~~~s~a--e~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~   68 (90)
T COG1849           4 EELAEKIEKYIELLEEALKEIKSRPGDRSAA--EDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAH   68 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCcchHH--HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3456667777778888777     22   22  3345554  6777899999999999999987765

>KOG1125|consensus

Probab=82.97  E-value=2.9  Score=39.28  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhhhhhcCCCch
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD----IQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d----~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      .+.-+|-.|.-.|++++|+.||+.++ .....-..      .-=|+|--. -|    -..|..| .+|-+|-     .-.
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL-~v~Pnd~~------lWNRLGAtL-AN~~~s~EAIsAY-~rALqLq-----P~y  497 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAAL-QVKPNDYL------LWNRLGATL-ANGNRSEEAISAY-NRALQLQ-----PGY  497 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHH-hcCCchHH------HHHHhhHHh-cCCcccHHHHHHH-HHHHhcC-----CCe
Confidence            34568999999999999999999998 44433221      123555544 33    2333333 3444442     111


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      . |  .+-=-||.||-.+.|++|++.||.+|+
T Consensus       498 V-R--~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  498 V-R--VRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             e-e--eehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            1 2  223469999999999999999999875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=82.33  E-value=22  Score=32.30  Aligned_cols=97  Identities=13%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTL-FRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~-iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      +.-.|.++...|+.++|++.|.++. +-...-++.=.+|+.= .=..++. +||.....+..+..+   +   ..|. +.
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~---~---s~WS-ka  340 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLK---E---SKWS-KA  340 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHh---c---cccH-HH
Confidence            4568899999999999999999988 6555555555544332 2223445 899988877766555   2   6896 55


Q ss_pred             HHHHHHHHHHhhhhcH-------HHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQY-------CRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~f-------k~AA~lfld~~  159 (162)
                      -+.-..|..++..++.       ++|.++|-.+.
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            5555677777777777       88888887643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1155|consensus

Probab=82.21  E-value=11  Score=35.12  Aligned_cols=106  Identities=11%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             hHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398            4 YYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHE-----KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus         4 ~Y~~l~~~~~~~~D~~~~~~~~~~n~~~l~~Le~~lk-----~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      ||+..|+  --|-|+-....+-+.- .++.++++.+|     -+.|  +++ -+|+..+|+.|.+-+|.++|..+|.+-.
T Consensus       420 YfqkA~~--~kPnDsRlw~aLG~CY-~kl~~~~eAiKCykrai~~~--dte-~~~l~~LakLye~l~d~~eAa~~yek~v  493 (559)
T KOG1155|consen  420 YFQKALE--LKPNDSRLWVALGECY-EKLNRLEEAIKCYKRAILLG--DTE-GSALVRLAKLYEELKDLNEAAQYYEKYV  493 (559)
T ss_pred             HHHHHHh--cCCCchHHHHHHHHHH-HHhccHHHHHHHHHHHHhcc--ccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3444443  3467888888887776 88999999999     5666  553 5788999999999999999999999977


Q ss_pred             CCCCCChHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy398           79 ADKTNPKSH----RIDAVFTLFRIAYFHGCDIQAMTAAIEKAT  117 (162)
Q Consensus        79 ~~~~~s~g~----kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~  117 (162)
                       +--..-|.    -+-.++-+.+--+-. .||.....|-.++-
T Consensus       494 -~~~~~eg~~~~~t~ka~~fLA~~f~k~-~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  494 -EVSELEGEIDDETIKARLFLAEYFKKM-KDFDEASYYATLVL  534 (559)
T ss_pred             -HHHHhhcccchHHHHHHHHHHHHHHhh-cchHHHHHHHHHHh
Confidence             42222222    333444444333334 78888777765543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=81.29  E-value=19  Score=26.58  Aligned_cols=86  Identities=23%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             hhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHH
Q psy398           63 SIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYC  142 (162)
Q Consensus        63 ~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~  142 (162)
                      ..||...+.+.+.... ..-.++.......|.+-.+.+.. +|+......+.++-.-     ..|-..++..+..-+-.+
T Consensus        23 ~~~~~~~~~~~~~~l~-~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLA-KDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALAN-----APDPELKPLARLRLARIL   95 (145)
T ss_pred             HCCCHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHH
Confidence            5889999988899988 66666667777888888899888 9999998888887664     345556666677778888


Q ss_pred             hhhhcHHHHHHHh
Q psy398          143 LAIRQYCRAAELF  155 (162)
Q Consensus       143 l~~R~fk~AA~lf  155 (162)
                      +..++|.+|...+
T Consensus        96 ~~~~~~d~Al~~L  108 (145)
T PF09976_consen   96 LQQGQYDEALATL  108 (145)
T ss_pred             HHcCCHHHHHHHH
Confidence            9999999998886

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=80.79  E-value=22  Score=26.83  Aligned_cols=75  Identities=15%  Similarity=-0.023  Sum_probs=50.1

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLF-------RIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~i-------Rv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      .-.++..+|.-|...|+.+.|++.|.+++ ......+   +....+.       |+.+.. +++.....+..+|....++
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~~~~~~---~~~~~la~i~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQAL-ERNPFLP---QALNNMAVICHYRGEQAIEQ-GDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcH---HHHHHHHHHHHHhhHHHHHc-ccHHHHHHHHHHHHHHHHH
Confidence            34588999999999999999999999988 5432222   2222222       233356 7888888888888776554


Q ss_pred             cCCCchh
Q psy398          123 ISGGDWS  129 (162)
Q Consensus       123 ~~ggDW~  129 (162)
                      ..|.|.+
T Consensus       146 a~~~~p~  152 (168)
T CHL00033        146 AIALAPG  152 (168)
T ss_pred             HHHhCcc
Confidence            2234433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
4b4t_R	429	Near-Atomic Resolution Structural Model Of The Yeas		7e-16

>pdb|4B4T|R Chain R, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 429

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 26/181 (14%)
Query: 1   MAPYYKEVCEEF-------------------GW-KMDEKFYTEMKDANEKRLKELDLEHE 40
           MAPYYK +CEE+                    W K D++ Y E+   NE ++KEL+ + +
Sbjct: 59  MAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQ 118
Query: 41  KNMMDEEDQV--SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRI 98
           K   D+E ++  +  W    +Y   IGD+  A K    K   K      +ID + T+ R+
Sbjct: 119 KLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTL-GKSLSKAISTGAKIDVMLTIARL 177
Query: 99  AYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDV 158
            +F+  D   +   +E    +IE   GGDW  RN+ K Y G++CLA+R +  AA+L VD 
Sbjct: 178 GFFYN-DQLYVKEKLEAVNSMIE--KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234
Query: 159 I 159
           +
Sbjct: 235 L 235

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	100.0
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.3
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	98.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.94
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.86
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.73
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.66
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.54
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.53
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.51
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.44
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	97.44
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.36
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.32
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.29
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.18
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.17
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.09
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.01
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.97
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.92
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.85
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.83
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	96.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.67
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.51
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.5
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.47
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.39
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.34
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.3
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.1
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.1
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.07
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.98
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.96
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.88
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.75
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	95.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.59
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.48
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.38
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	95.15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	95.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.99
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	94.92
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.91
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.75
2gw1_A	514	Mitochondrial precursor proteins import receptor;	94.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	94.52
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	94.47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	94.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.31
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.23
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	94.07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	94.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.05
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	93.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	93.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	93.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	93.29
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	92.88
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.87
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	92.82
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	92.67
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.66
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	92.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	92.05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	91.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	91.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	91.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	91.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	91.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	91.01
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.0
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	90.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	90.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	89.23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	89.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	88.85
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	88.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	88.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	88.39
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	88.23
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	87.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	87.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	87.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	86.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	86.7
1pc2_A	152	Mitochondria fission protein; unknown function; NM	86.57
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	84.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	83.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	83.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	82.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	82.01
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	81.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	81.45
2oo2_A	86	Hypothetical protein AF_1782; structural genomics,	81.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	80.94
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	80.94
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	80.75
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	80.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	80.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	80.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	80.04

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=270.20  Aligned_cols=155  Identities=35%  Similarity=0.637  Sum_probs=150.4

Q ss_pred             CchhHHHHHHhcCC--------------------CcCHHHHHHHHHHHHHHHHHHHHHHH----hcCCCchHHHHHHHHh
Q psy398            1 MAPYYKEVCEEFGW--------------------KMDEKFYTEMKDANEKRLKELDLEHE----KNMMDEEDQVSGIWQA   56 (162)
Q Consensus         1 m~p~Y~~l~~~~~~--------------------~~D~~~~~~~~~~n~~~l~~Le~~lk----~Nlg~~~~eIr~~~~~   56 (162)
                      |+|||+++|+++.+                    |+|++|++.|.++|+.++++|++.++    +|.|  +.|||+++.+
T Consensus        59 ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~--e~e~~~~~~~  136 (429)
T 4b4t_R           59 MAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEG--ELEQAQAWIN  136 (429)
T ss_dssp             CHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSC--CCCCSSCCHH
T ss_pred             CHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHH
Confidence            89999999999864                    78999999999999999999999998    6899  9999999999


Q ss_pred             hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398           57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA  136 (162)
Q Consensus        57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv  136 (162)
                      +|+||+++||+++|+++|.+++ ++|++++|++|++|.+||+++++ +||.++..++.||+.++++  +|||+++||+|+
T Consensus       137 la~~~~~~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~--~~d~~~~~~lk~  212 (429)
T 4b4t_R          137 LGEYYAQIGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEK--GGDWERRNRYKT  212 (429)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT--CCCTHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhc--CCCHHHHHHHHH
Confidence            9999999999999999999999 99999999999999999999999 9999999999999999998  999999999999


Q ss_pred             HHHHHHhhhhcHHHHHHHhHhhccC
Q psy398          137 YEGVYCLAIRQYCRAAELFVDVIRS  161 (162)
Q Consensus       137 y~gl~~l~~R~fk~AA~lfld~~~T  161 (162)
                      |.|+++|..|+|+.||++|+++.+|
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            9999999999999999999998776

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.30  E-value=1e-11  Score=108.55  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=95.7

Q ss_pred             HhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCC-Cchhh
Q psy398           55 QAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISG-GDWSA  130 (162)
Q Consensus        55 ~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~g-gDW~r  130 (162)
                      ..+|.+|...|++.+|++.+.+++ .+|..   ..+.+|+++..+++.... +|++.++..+.+|......  . +||..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~-~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~a--i~~~p~i  178 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLL-RELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANA--IYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SCCCHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH-HHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhcc--CCCCHHH
Confidence            378999999999999999999999 88766   789999999999999999 9999999999999999875  4 89999


Q ss_pred             hhHHHHHHHHHHh-hhhcHHHHHHHhHhhcc
Q psy398          131 RNKLKAYEGVYCL-AIRQYCRAAELFVDVIR  160 (162)
Q Consensus       131 rnrLKvy~gl~~l-~~R~fk~AA~lfld~~~  160 (162)
                      .++++++.|+++| ..|||+.|+..|+++..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            9999999999999 89999999999999864

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=2.3e-06  Score=74.89  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=90.8

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hhhcCCCch
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADK---TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL-IEGISGGDW  128 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~---~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l-~e~~~ggDW  128 (162)
                      -...+|..|.+.||+.+|.+...... -.   ......++++.+..+|+++.. +||..+...+.||... ...  .+++
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~-~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~~--~~~~  214 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQ-VETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFKN--PKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-HHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHS--SCCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhccc--CCcH
Confidence            35679999999999999999888854 32   345688999999999999999 9999999999999753 444  6789


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      +.+.+++.+.|.+++..|+|.+|++.|.++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.09  E-value=5.5e-05  Score=52.10  Aligned_cols=108  Identities=10%  Similarity=0.012  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS---HRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS  124 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g---~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~  124 (162)
                      ..+..++..+|..|...|+.+.|++.|.+++ +.....+   ....+...+-.+.+.. +++.....++.+|-.+...  
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~--   81 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQ--   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--
Confidence            4456678899999999999999999999987 5443333   3334555566666666 8999999999999888776  


Q ss_pred             CCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          125 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       125 ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .++...........|..++..++|.+|.+.|-.++
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            56666666666777888888999999988887664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.99  E-value=0.00021  Score=50.52  Aligned_cols=105  Identities=13%  Similarity=0.006  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh-hhcCCC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI-EGISGG  126 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~-e~~~gg  126 (162)
                      .+.-.++..+|.-|.+.|++++|++.|.+++ +.....   .+...++-.+-+.. +++........+|-.+- +.  ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~~p~~---~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~--~~   77 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELDPSN---ITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRET--RA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCccc--ch
Confidence            5566789999999999999999999999998 544332   34556666666777 99999999999998873 33  45


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +|....+.-.-.|..+...++|.+|-+.|-.++
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666666667899999999999999987665

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.94  E-value=0.00042  Score=47.52  Aligned_cols=109  Identities=8%  Similarity=-0.045  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ...+..++..+|..|...|+.++|.+.|.++. +..   ........+...+-.+.+.. +++.....++.++-.+... 
T Consensus        45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~-  121 (164)
T 3ro3_A           45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQE-  121 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH-
Confidence            45556789999999999999999999999977 533   33344556667777777777 9999999999999999776 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .++...........|..++..+++.+|.+.|-.++
T Consensus       122 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          122 -LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             56655566667778888899999999999987765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00019  Score=58.71  Aligned_cols=108  Identities=9%  Similarity=0.054  Sum_probs=90.7

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ....+..+|..|...|++++|.+.+.+.. ..+   ......+++.+.++|+.+.. +|+......+.+|...... .+.
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~  210 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAARTAANS-IYC  210 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-SCC
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHhhc-CCC
Confidence            34567899999999999999999999865 433   33456889999999999999 9999999999999988543 133


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ++....++..+.|.+++..++|.+|...|.+++.
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5566788889999999999999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.79  E-value=0.001  Score=44.33  Aligned_cols=104  Identities=14%  Similarity=0.041  Sum_probs=81.7

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS  129 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~  129 (162)
                      .-.++..+|..|.+.|+.+.|.+.|.++. ......   .++.+.+..+.+.. +++......+.++-.+... .+.+|.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELDPTN---MTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRE-NREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH-STTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCcc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccc-cchhHH
Confidence            34678899999999999999999999988 543222   45667777777778 9999999999999887432 145665


Q ss_pred             hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .....-...|..++..++|.+|.+.|-.++
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            556666678888999999999999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.73  E-value=0.0037  Score=45.30  Aligned_cols=109  Identities=9%  Similarity=-0.053  Sum_probs=88.8

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC----ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN----PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~----s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      ....-.++..+|..|...|+.+.|.+.|.+++ +...    .......+...+-.+.+.. +++.....++.++-.+...
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEER-ELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHh
Confidence            45667789999999999999999999999988 5422    2335566677777777888 9999999999999998776


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        .+++..........|..++..+++.+|.+.|-.++
T Consensus       140 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          140 --ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence              67766666666778888899999999999887765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.66  E-value=0.00099  Score=50.99  Aligned_cols=103  Identities=13%  Similarity=0.044  Sum_probs=85.7

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADK-TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~-~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .+.-+|..+...|+.+.|.+.|.++. +. ...+....++...+..+.+.. +++.....++.+|-.+...  .++....
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~~~   82 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLART--IGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--HTCHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc--ccccHHH
Confidence            56678999999999999999999988 54 344445578888888888888 9999999999999998776  5666666


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...-...|..+...++|.+|.+.|-.++
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al  110 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHL  110 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            7777788889999999999999887764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.61  E-value=0.0014  Score=49.28  Aligned_cols=111  Identities=10%  Similarity=0.010  Sum_probs=87.5

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      ......++..+|..|...|+.+.|++.|.+++ +..     ........+...+-++.+.. +++.....++.+|-.+.+
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~  116 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIRE  116 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999988 553     23355677788888888888 999999999999999876


Q ss_pred             hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +..|.+...........|..+...++|.+|...|-.++
T Consensus       117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B          117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            53334434445555667788888999999999987765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.60  E-value=0.00079  Score=48.94  Aligned_cols=106  Identities=11%  Similarity=-0.022  Sum_probs=83.7

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      .-.++..+|..|...|+.+.|.+.|.+++ +....   ......+...+-.+.... +++.....++.+|-.+.+.  .+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~  100 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQ-QQAQKSGDHTAEHRALHQVGMVERMA-GNWDAARRCFLEERELLAS--LP  100 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--cC
Confidence            45678899999999999999999999988 63332   334455566666666677 9999999999999999876  56


Q ss_pred             -chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 -DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 -DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       ++......-...|..++..++|.+|...|-.++
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             444555666677888889999999999988765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=0.0032  Score=43.11  Aligned_cols=99  Identities=12%  Similarity=-0.048  Sum_probs=79.3

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -..+..+|..+.+.|+++.|++.|.++. ..........++.+.+..+.+.. +++......+.++-.+-.    .+   
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~---   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDG----GD---   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTS----CC---
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCc----cC---
Confidence            4567899999999999999999999999 77666555677888888888888 999999999988877621    22   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..+...++|.+|.+.|-.++
T Consensus        99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A           99 -VKALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             2344567888888999999999987664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.54  E-value=0.0018  Score=45.72  Aligned_cols=100  Identities=11%  Similarity=0.037  Sum_probs=76.6

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      +-+.-+++.++|.-|.+.||+++|+++|.+++ +.....   .++.+.+-.+-+.. +++........+|-.+-    ..
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~----p~   79 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV-KRDPEN---AILYSNRAACLTKL-MEFQRALDDCDTCIRLD----SK   79 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhh----hh
Confidence            34567789999999999999999999999988 543322   35666666677777 99999999998887762    12


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ++    ..-...|..++..++|.+|.+.|-.++
T Consensus        80 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           80 FI----KGYIRKAACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             CH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hh----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            22    234467888899999999999987665

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.53  E-value=0.0083  Score=48.74  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=78.7

Q ss_pred             hHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc-hhhhh
Q psy398           57 KLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD-WSARN  132 (162)
Q Consensus        57 ~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD-W~rrn  132 (162)
                      +|.++...|+++.|++.|.++. ...   .......++...+-.+.... +++.....+..+|-.+..+  .++ ..+..
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~~~  184 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKE--HEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--CSTTHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--CccchHHHH
Confidence            9999999999999999999998 653   33444667777777777777 9999999999999999876  555 33445


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..-..-|..+...++|.+|-+.|-.++
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            555567788888899999988887765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.53  E-value=0.0015  Score=49.14  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=87.8

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      ....-.++..+|..|...|+.++|++.|.+++ +..     ............+..+.+.. +++.....++.++-.+.+
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999988 543     22245677778888888888 999999999999998865


Q ss_pred             hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ...|++..........-|..++..++|.+|.+.|-.++.
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            433444444555666778888899999999999987653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.53  E-value=0.0021  Score=51.22  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=86.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADK-TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~-~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .++..+|..+...|+.++|+..|.++. .. ........++.+.+..+.+.. +++.....+..+|-.+...  .++...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~~   85 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLART--IGDQLG   85 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHh--ccccHH
Confidence            356789999999999999999999998 54 344455678888888888888 9999999999999999876  667666


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ....-...|..+...++|.+|...|-.++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  114 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHL  114 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66677778888899999999999887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.51  E-value=0.0016  Score=49.87  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=87.6

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      ......++..+|..|...|+.+.|.+.|.++. +..     ........+...+.++.+.. +++.....++.++-.+.+
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999998 654     22355667777888888888 999999999999999876


Q ss_pred             hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...|++...........|..++..++|.+|.+.|-.++
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            52234444445555667888889999999999997765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.44  E-value=0.0026  Score=43.04  Aligned_cols=100  Identities=12%  Similarity=-0.076  Sum_probs=72.3

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|.-+.+.|+.+.|.+.|.++. ..........+..+.+-.+.+.. +++......+.++-..-     .+.....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~-----p~~~~~~   76 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRY-----PTHDKAA   76 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-----TTSTTHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHC-----CCCcccH
Confidence            46678888999999999999999988 54444444556777777777777 89988888888876652     2222223


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......|..++..+++.+|...|-.++
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344456777888899999988876554

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.001  Score=57.32  Aligned_cols=95  Identities=9%  Similarity=-0.004  Sum_probs=75.9

Q ss_pred             HhhcCHHHHHHHHHHhcCCCCC--------------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           62 CSIGDRAEAFKLADSKFADKTN--------------PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        62 ~~iGD~~~A~~ay~~~~~~~~~--------------s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .+..|.++|++...... .+..              .....+.+.+.+.|+.+.. +|...++++|++++.+++.  ++|
T Consensus        87 ~~~~d~~~al~~L~~~~-~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~-~d~~~a~~~l~~~~~~l~~--~~~  162 (393)
T 4b4t_O           87 KDSKDFDESLKYLDDLK-AQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLK-NDLVKARDLLDDLEKTLDK--KDS  162 (393)
T ss_dssp             HHTTCHHHHHHHHHHHT-TTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH--SCC
T ss_pred             hhcCCHHHHHHHHHHHH-HHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhc--cCC
Confidence            45678888888887765 4431              1234688889999999999 9999999999999999998  889


Q ss_pred             hhhhhHHHHHHH--HHHhhhhcHHHHHHHhHhhcc
Q psy398          128 WSARNKLKAYEG--VYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       128 W~rrnrLKvy~g--l~~l~~R~fk~AA~lfld~~~  160 (162)
                      |+.+.+.+.|++  .|+...++|..+...++..++
T Consensus       163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~  197 (393)
T 4b4t_O          163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS  197 (393)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999988864  555567788888888777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.43  E-value=0.0073  Score=46.03  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=82.9

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ......++..+|..|...|+.+.|.+.|.++. +....   ..........+.++.+.. +++.....++.++-.+... 
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~-  255 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQ-  255 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-
Confidence            45556688899999999999999999999987 54332   333445677777777777 9999999999999888765 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .++.......-...|..++..++|.+|.+.|-.++
T Consensus       256 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          256 -LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             55655555566667777888899998888876654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.40  E-value=0.0044  Score=50.05  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ..-...+..+|..+...|+++.|++.|.++. +.. ........+.+.+-.+.+.. +++.....++.+|-.+.+.  -+
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~--~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKS--MN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH--TT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH--cc
Confidence            4445667789999999999999999999998 543 33444557788888888888 9999999999999998876  56


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      |.......-...|..+...++|.+|...|-.++
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666666777788889999999999999887664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.39  E-value=0.0017  Score=46.72  Aligned_cols=103  Identities=11%  Similarity=-0.025  Sum_probs=78.9

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---------------hHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---------------KSHRIDAVFTLFRIAYFHGCDIQAMTA  111 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---------------~g~kiD~~l~~iRv~~f~~~d~~~v~~  111 (162)
                      ..+.-..+..+|.-|.+.|+++.|++.|.+++ .....               ......+.+++-.+.+.. +++.....
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~   84 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEE   84 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHH
Confidence            44556778999999999999999999999998 54211               344567788888888888 99999999


Q ss_pred             HHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          112 AIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       112 ~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...+|-.+-     .++   .+.-...|..++..++|.+|...|-.++
T Consensus        85 ~~~~al~~~-----p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           85 TSSEVLKRE-----ETN---EKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-----Ccc---hHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            988887762     222   2334456888899999999999887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.36  E-value=0.0025  Score=48.81  Aligned_cols=111  Identities=11%  Similarity=0.067  Sum_probs=87.7

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      ......++..+|..|...|+.++|.+.|.++. ...     ........+...+..+.+.. +++.....++.++-.+.+
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~  142 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIRE  142 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999988 543     22355677788888888888 999999999999998865


Q ss_pred             hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...|++...........|..++..++|.+|.+.|-.++
T Consensus       143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42234444455556667888889999999999987765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.36  E-value=0.007  Score=47.80  Aligned_cols=107  Identities=10%  Similarity=0.054  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC----CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADK----TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~----~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ...-.++..+|..|...|+++.|++.|.+++ +.    .......+.+..++-.+.+.. +++.....++.+|-.+... 
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal-~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~~~~-  228 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQIL-KQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCR-  228 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHh-
Confidence            3456689999999999999999999999987 32    222233346888888888888 9999999999999998765 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHH-HHHhHhh
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRA-AELFVDV  158 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~A-A~lfld~  158 (162)
                       .++......+-...|..+...+++.+| ...|-.+
T Consensus       229 -~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          229 -INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             -TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence             667666677777888899999999999 5555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.33  E-value=0.016  Score=46.03  Aligned_cols=109  Identities=8%  Similarity=-0.030  Sum_probs=84.7

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ...+..++..+|..|...|+.+.|.+.|.++. +..   ........+...+.++.+.. +++.....++.+|-.+... 
T Consensus       223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~-  299 (406)
T 3sf4_A          223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQE-  299 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHh-
Confidence            45556689999999999999999999999977 432   33344466677777777777 9999999999999998766 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       -++.......-...|..+...++|.+|.+.|-.++
T Consensus       300 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          300 -LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             56655555556677788888999999999887664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.33  E-value=0.0059  Score=49.77  Aligned_cols=110  Identities=9%  Similarity=-0.101  Sum_probs=83.6

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC----hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP----KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s----~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      +.+.-.++..+|..|...|+.+.|++.|.+++ +....    ......+...+-.+.+.. +++.....+..+|-.+..+
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999999987 53322    223455555555555666 9999999999999998776


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                        -++..........-|..+...++|.+|-+.|-.++.
T Consensus       215 --~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          215 --IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              566554555555678888889999999999887764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.32  E-value=0.0037  Score=41.90  Aligned_cols=98  Identities=12%  Similarity=0.052  Sum_probs=74.9

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      ..-.++..+|..|.+.|+.+.|++.|.++. ......   .++.+.+..+.+.. +++......+.++-.+-.    .++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~----~~~   84 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRNPKD---AKLYSNRAACYTKL-LEFQLALKDCEECIQLEP----TFI   84 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHH-TTCTTC---HHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCT----TCH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----Cch
Confidence            345678899999999999999999999998 544322   46667777777777 899999999888877631    222


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          ......|..++..++|.+|.+.|-.++
T Consensus        85 ----~~~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           85 ----KGYTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                344566778888999999999987654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.32  E-value=0.014  Score=46.00  Aligned_cols=126  Identities=12%  Similarity=0.064  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHH--hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC----CChHHHHHHHHHHHHHHHHh
Q psy398           29 EKRLKELDLEHE--KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT----NPKSHRIDAVFTLFRIAYFH  102 (162)
Q Consensus        29 ~~~l~~Le~~lk--~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~----~s~g~kiD~~l~~iRv~~f~  102 (162)
                      ++-++-++.-++  ....+ ...+..++..+|..|...|+++.|++.|.+++ +..    ........+..++-.+.+..
T Consensus       132 ~~Ai~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          132 EYCILELKKLLNQQLTGID-VYQNLYIENAIANIYAENGYLKKGIDLFEQIL-KQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHHHTCCCCSC-TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            333445555555  12220 22345578999999999999999999999988 421    34556677888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhh-cHHHHHHHhHhhc
Q psy398          103 GCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIR-QYCRAAELFVDVI  159 (162)
Q Consensus       103 ~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R-~fk~AA~lfld~~  159 (162)
                       +++.....++.+|-.+..+  -++......+-...|..+...+ +|.+|-+.|-.++
T Consensus       210 -~~y~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          210 -SRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             -TCHHHHHHHHHHHHHHHHH--TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence             9999999999999999766  6676667888888899999999 5799988886654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0028  Score=47.17  Aligned_cols=103  Identities=12%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -+++..+|..|...|+++.|++.|.++. ...    ...+..+.+..+.+.. +++......+.++-.+... .+.+|..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~----~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~   77 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH----KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGRE-MRADYKV   77 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS----CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-TTCCHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh----ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcc-cccchHH
Confidence            4678899999999999999999999988 544    2256778888888888 9999999999999887532 1346665


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ........|..+...++|.+|.+.|-.++.
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            567777888889999999999999877653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.28  E-value=0.0041  Score=50.19  Aligned_cols=109  Identities=10%  Similarity=0.033  Sum_probs=83.5

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN---PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ...+..++..+|..|...|+++.|++.|.+++ +...   .......+...+.++.+.. +++.....++.++-.+... 
T Consensus       219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~-  295 (411)
T 4a1s_A          219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVE-  295 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH-
Confidence            45566789999999999999999999999987 5433   3333444666777777777 9999999999999988765 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       -++.......-...|..++..++|.+|.+.|-.++
T Consensus       296 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          296 -LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             55554455556667777888899999988886654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0064  Score=41.48  Aligned_cols=95  Identities=12%  Similarity=-0.039  Sum_probs=74.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      ..+..+|.-+.+.|++++|++.|.++. ......   .++.+.+-.+.+.. +++........+|-.+-    ..+    
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~----p~~----   71 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMI-KRAPED---ARGYSNRAAALAKL-MSFPEAIADCNKAIEKD----PNF----   71 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTC----
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCc----
Confidence            567899999999999999999999988 544332   36677777777778 99999999999887762    122    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...-...|..++..++|.+|...|-.++
T Consensus        72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           72 VRAYIRKATAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            2344567888889999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.25  E-value=0.0077  Score=48.93  Aligned_cols=110  Identities=9%  Similarity=-0.012  Sum_probs=85.8

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC----hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP----KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s----~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      ..+.-.++..+|..|...|+.+.|++.|.+++ +....    ......+...+-.+.... +++.....+..+|-.+..+
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999987 53322    334455555666666666 9999999999999999776


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                        .+|.......-..-|..+...++|.+|-+.|-.++.
T Consensus       217 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          217 --EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              566655555666678888899999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.21  E-value=0.0049  Score=50.29  Aligned_cols=104  Identities=9%  Similarity=-0.036  Sum_probs=82.0

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch-
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW-  128 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW-  128 (162)
                      .+.-+|.++...|+++.|++.|.++. .....   .....++...+-.+.... +++.....+..+|-.+..+  -++. 
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~--~~~~~  178 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQN--HPLYS  178 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--STTCH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHh--CCCch
Confidence            46678999999999999999999998 65433   344566666776777777 9999999999999999775  4553 


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ......-..-|..+...++|.+|.+.|-.++.
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  210 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALE  210 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34455556788889999999999999987653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.18  E-value=0.011  Score=38.45  Aligned_cols=97  Identities=10%  Similarity=-0.040  Sum_probs=73.8

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|.-+.+.|+.+.|.+.|.++. ......   .++.+.+..+.+.. +++......+.++-.+..    .+   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~---   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAI-KLDPHN---HVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKP----DW---   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCc----cc---
Confidence            3567889999999999999999999988 543322   45667777777778 999999999888877621    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                       .......|..+...++|.+|.+.|-.++.
T Consensus        72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             23445667778889999999999877653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.17  E-value=0.0065  Score=48.61  Aligned_cols=106  Identities=9%  Similarity=0.021  Sum_probs=80.5

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCC
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK---SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISG  125 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~---g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~g  125 (162)
                      ..-.++..+|..|.+ |++++|++.|.+++ +.....   ....++...+-.+.+.. +++.....+..+|-.+..+  .
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~--~  188 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKE--M  188 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--c
Confidence            456788999999999 99999999999988 543322   23456777777777778 9999999999999988654  4


Q ss_pred             CchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          126 GDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       126 gDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +++......-...|+.++..+++.+|...|-.++
T Consensus       189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            4433333444556777778899999999887654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.15  E-value=0.01  Score=41.37  Aligned_cols=95  Identities=13%  Similarity=-0.040  Sum_probs=48.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|...|+.+.|++.|.++. ......   .+..+.+..+.+.. +++......+.++-.+-.    .+... 
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p----~~~~~-  117 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAI-ELDKKY---IKGYYRRAASNMAL-GKFRAALRDYETVVKVKP----HDKDA-  117 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----CCHHH-
Confidence            345566666666666666666666665 332211   23444444444455 666666666666655421    12221 


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                       ......+..++..++|.+|.+.+-.
T Consensus       118 -~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A          118 -KMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHcccc
Confidence             1112233335556666666666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.15  E-value=0.014  Score=38.41  Aligned_cols=99  Identities=6%  Similarity=-0.035  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      ...-.++..+|..+...|+.+.|++.|.++. ......   .++.+.+.++.+.. +++......+.++-.+-.    .+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~   79 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELNPAN---AVYFCNRAAAYSKL-GNYAGAVQDCERAICIDP----AY   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCc----cC
Confidence            3445678889999999999999999999988 543322   45677777777778 999999888888877621    22


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          .......|..+...++|.+|.+.|-.++
T Consensus        80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           80 ----SKAYGRMGLALSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                2344566778888999999999887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.14  E-value=0.025  Score=44.58  Aligned_cols=104  Identities=9%  Similarity=-0.093  Sum_probs=79.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc-
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD-  127 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD-  127 (162)
                      ..+..+|.+|...|+++.|++.|.+++ +..   ...-....+...+-.+.... +++.....+..+|-.+.+.  -++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~--~~~~  191 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEA--LHDN  191 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SCCC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--cCcc
Confidence            345678999999999999999999988 543   22334566777777777777 9999999999999988665  333 


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +......-..-|..+...++|.+|-+.|-.++
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            22222555577888899999999999987765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.12  E-value=0.0059  Score=39.44  Aligned_cols=99  Identities=9%  Similarity=-0.048  Sum_probs=74.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. ......   .+..+.+-.+.+.. +++......+.++-.+.     .+ ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~-----~~-~~~   75 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAI-QLDPEE---SKYWLMKGKALYNL-ERYEEAVDCYNYVINVI-----ED-EYN   75 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS-----CC-TTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-----cc-cch
Confidence            457789999999999999999999988 544332   35667777777777 99999999998887762     12 112


Q ss_pred             hHHHHHHHHHHhhh-hcHHHHHHHhHhhccC
Q psy398          132 NKLKAYEGVYCLAI-RQYCRAAELFVDVIRS  161 (162)
Q Consensus       132 nrLKvy~gl~~l~~-R~fk~AA~lfld~~~T  161 (162)
                      .......|..++.. ++|.+|.+.|-.++.+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            23445667788889 9999999999887653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.12  E-value=0.013  Score=43.34  Aligned_cols=102  Identities=13%  Similarity=-0.054  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH-------------HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS-------------HRIDAVFTLFRIAYFHGCDIQAMTAAIE  114 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g-------------~kiD~~l~~iRv~~f~~~d~~~v~~~i~  114 (162)
                      .+.-..+..+|..|.+.|+++.|++.|.++. .......             ...++.+.+-++.+.. +++.....++.
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~  112 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence            3345678899999999999999999999988 5432211             1246777778888888 99999999999


Q ss_pred             HHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          115 KATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       115 ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +|-.+-.    .+    .+.-...|..++..++|.+|.+.|-.++
T Consensus       113 ~al~~~p----~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A          113 KVLKIDK----NN----VKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHST----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCc----cc----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9887621    12    2344567888889999999999887664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.11  E-value=0.0084  Score=42.99  Aligned_cols=99  Identities=12%  Similarity=-0.022  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      ..--..+..+|..|.+.|+++.|++.|.+++ ......   .++.+.+-.+.+.. +++......+.+|-.+-.    .+
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~   78 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIAPAN---PIYLSNRAAAYSAS-GQHEKAAEDAELATVVDP----KY   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCcC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----CC
Confidence            3455678899999999999999999999988 544332   46677777777778 999999999998877631    22


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          ...-...|..++..++|.+|.+.|-.++
T Consensus        79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           79 ----SKAWSRLGLARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                2334456888888999999999887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.10  E-value=0.012  Score=38.69  Aligned_cols=96  Identities=18%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|.+.|+.+.|.+.|.++. ......   ....+.+..+.+.. +++....+.+.++-....    .+.  
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~----~~~--  103 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRS---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----RSA--  103 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCT----TCH--
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCc---hHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC----CCh--
Confidence            3456667777777777777777777776 433221   23445555555555 777777777766655421    121  


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ..-...|..+...+++.+|...|-.++
T Consensus       104 --~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A          104 --EAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             --HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence              122234555667788888877776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.09  E-value=0.011  Score=40.38  Aligned_cols=96  Identities=14%  Similarity=-0.034  Sum_probs=74.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -..+..+|..|...|+++.|++.|.++. ......   .++.+.+-.+.+.. +++......+.++-.+-    ..++  
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~----p~~~--   77 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAI-TRNPLV---AVYYTNRALCYLKM-QQPEQALADCRRALELD----GQSV--   77 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCH--
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhCcCc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----chhH--
Confidence            3567899999999999999999999988 544332   45677777777778 99999999999887763    1232  


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ......|..++..++|.+|-..|-.++
T Consensus        78 --~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           78 --KAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              344567888888999999998887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.01  E-value=0.0087  Score=43.17  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=38.8

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+..+|..|.+.||+++|+++|.+++ +....   -.+..+.+..+-+.. +++......+.++...
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~   68 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVL-KADPN---NVETLLKLGKTYMDI-GLPNDAIESLKKFVVL   68 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc
Confidence            46677777777777777777777776 43222   134555555555556 6666666666666543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.97  E-value=0.014  Score=46.61  Aligned_cols=115  Identities=11%  Similarity=0.020  Sum_probs=81.7

Q ss_pred             hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy398           41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG-CDIQAMTAAIEKATEL  119 (162)
Q Consensus        41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~-~d~~~v~~~i~ka~~l  119 (162)
                      .+++ .......++..+|..|.+.|++++|+++|.+++ +-....|..-...-...++|..+. +++.....+..+|-.+
T Consensus        67 ~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           67 ANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4444 135667789999999999999999999999987 543333333333444445554442 6888888999999888


Q ss_pred             hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...  .++.......-.--|..++..++|.+|...|-.++
T Consensus       145 ~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          145 FEN--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHh--CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            765  56654444444455778888999999999887765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.94  E-value=0.019  Score=44.00  Aligned_cols=102  Identities=14%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -+++..+|.-+.+.|++++|++.|.++. ..........++.+.+-.+.+.. +++......+.++-.+--  ....   
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p--~~~~---   87 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQ--IDPR---   87 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT--TCTT---
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCC--CCch---
Confidence            3567899999999999999999999999 66655556678889999999999 999999999999887731  1222   


Q ss_pred             hhHHHHHHHHHHhh--------hhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLA--------IRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~--------~R~fk~AA~lfld~~  159 (162)
                      ........|..++.        .++|.+|...|-.++
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l  124 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI  124 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            22334456777777        999999999887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.92  E-value=0.022  Score=37.14  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|..|.+.|+.+.|.+.|.++. .....   ..+..+.+..+.+.. +++......+.++-....    .+   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~----~~---   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPN---NAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----NN---   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcC---cHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCC----cc---
Confidence            4567889999999999999999999988 54322   245677777777788 999999888888876521    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..+...++|.+|...|-.++
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             1233455677778899999998886654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0028  Score=41.60  Aligned_cols=97  Identities=9%  Similarity=-0.104  Sum_probs=70.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..+.+.|++++|++.|.++. ......   .++.+.+-.+-+.. +++......+.+|-.+-  |..+++...
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~   77 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLI-TAQPQN---PVGYSNKAMALIKL-GEYTQAIQMCQQGLRYT--STAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSC--SSTTSHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC--CCccHHHHH
Confidence            567889999999999999999999988 543322   35566777777777 99999999999988774  224455544


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                      .+.....|..+...+++..|...|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHH
Confidence            555556677777777766554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.83  E-value=0.021  Score=41.88  Aligned_cols=102  Identities=11%  Similarity=-0.045  Sum_probs=77.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC-----
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG-----  126 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg-----  126 (162)
                      .++..+|.-|.+.|+.++|++.|.++. .....   -.+..+.+-.+.+.. +++......+.++-.+...  ..     
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~---~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~  110 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSI-NRDKH---LAVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRG--NQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTT--CSEEECG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcc---chHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence            588999999999999999999999988 54322   245667777777777 9999999999999887532  22     


Q ss_pred             -----chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          127 -----DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       127 -----DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                           ........-...|..+...++|.+|.+.|-.++.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                 1111224556778888999999999999877653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=96.82  E-value=0.023  Score=43.60  Aligned_cols=109  Identities=10%  Similarity=-0.084  Sum_probs=78.0

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF--------HGCDIQAMTAAIEKATE  118 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f--------~~~d~~~v~~~i~ka~~  118 (162)
                      ......++..+|.-|.+.|+++.|++.|.+.+ ..........+..+.+-.+-+.        . +++......+.++-.
T Consensus        48 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~  125 (261)
T 3qky_A           48 HEWAADAQFYLARAYYQNKEYLLAASEYERFI-QIYQIDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFID  125 (261)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHCCCCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHH
Confidence            33446788999999999999999999999998 5544344556777777777666        6 788888888877766


Q ss_pred             hhhhcCCCc-hhhhhHHH----------HHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          119 LIEGISGGD-WSARNKLK----------AYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       119 l~e~~~ggD-W~rrnrLK----------vy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .-  |.... +....++.          ...|..++..++|.+|...|-.++
T Consensus       126 ~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A          126 RY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            52  11221 22222221          566888999999999999987654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.81  E-value=0.034  Score=44.02  Aligned_cols=108  Identities=16%  Similarity=0.079  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHH---HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhhhhc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRID---AVFTLFRIAYF-HGCDIQAMTAAIEKATELIEGI  123 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD---~~l~~iRv~~f-~~~d~~~v~~~i~ka~~l~e~~  123 (162)
                      ...-.++..+|..|.+.|+.++|+.+|.+++ +.....|....   ....+-.+... . +++.....+..+|-.+... 
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~l-g~~~~A~~~~~~Al~~~~~-  150 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDL-HDYAKAIDCYELAGEWYAQ-  150 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHh-
Confidence            4556789999999999999999999999988 64444444333   33333333333 4 7899999999999888654 


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .++.......-.--|..++..++|.+|...|-.++
T Consensus       151 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  185 (292)
T 1qqe_A          151 -DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (292)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             44433333333445788889999999999987655

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.77  E-value=0.028  Score=40.66  Aligned_cols=97  Identities=11%  Similarity=-0.074  Sum_probs=72.0

Q ss_pred             HHHHhhHhHHHhh-cCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           52 GIWQAKLDYLCSI-GDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        52 ~~~~~~a~~~~~i-GD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .++..+|..|... |+.+.|.+.|.++. . ........++.+.+.++.+.. +++......+.++-....    .+   
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~----~~---  146 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKAL-A-DPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQP----QF---  146 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHH-T-STTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TC---
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHH-c-CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CC---
Confidence            4677899999999 99999999999999 6 222233456778888888888 999999888888876532    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..++..++|.+|.+.|-.++
T Consensus       147 -~~~~~~la~~~~~~~~~~~A~~~~~~~~  174 (225)
T 2vq2_A          147 -PPAFKELARTKMLAGQLGDADYYFKKYQ  174 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             2234455667778899999988876654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.74  E-value=0.033  Score=38.80  Aligned_cols=96  Identities=9%  Similarity=-0.032  Sum_probs=68.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|...|+.+.|.+.|.++. ......   .++.+.+.++.+.. +++......+.++-....    .+   
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~---  109 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSL-ADAPDN---VKVATVLGLTYVQV-QKYDLAVPLLIKVAEANP----IN---  109 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCc----Hh---
Confidence            4567788888888888888888888877 543322   35566777777777 888888888888776632    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..+...++|.+|.+.|-.++
T Consensus       110 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A          110 -FNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence             1233456777778889999988887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.72  E-value=0.022  Score=43.03  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..|.+.|+.+.|++.|.++. .............+.+-.+.... +++....+++.++-.+-.    .+.    
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~----~~~----  108 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDRDT----TRL----  108 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCT----
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCc----ccH----
Confidence            67788889999999999999999988 64444444455567777777777 899888888888877632    122    


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ......|..+...++|.+|.+.|-.++.
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            2344567777788889988888877653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.67  E-value=0.036  Score=38.56  Aligned_cols=96  Identities=9%  Similarity=-0.085  Sum_probs=72.4

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|...|+.++|.+.|.++. ......   ..+.+.+.++.+.. +++......+.++-....    .+   
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~---  143 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVA-EANPIN---FNVRFRLGVALDNL-GRFDEAIDSFKIALGLRP----NE---  143 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCcHh---HHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCc----cc---
Confidence            5678889999999999999999999988 543332   35667777777777 999998888888876632    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..+...+++.+|.+.|-.++
T Consensus       144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          144 -GKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             2344566777788899999999886654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.67  E-value=0.037  Score=39.71  Aligned_cols=98  Identities=10%  Similarity=-0.138  Sum_probs=72.3

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ..+--.++..+|..|.+.|+++.|++.|.+++ ......   .+..+.+-.+.... +++........+|-.+-    ..
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~----p~   97 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQERD---PKAHRFLGLLYELE-ENTDKAVECYRRSVELN----PT   97 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TT
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CchHHHHHHHHHHHHhC----CC
Confidence            34445678899999999999999999999988 543221   45666777777777 99999999999888762    23


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                      +++-.    ..-|..++..+++.+|++.|++
T Consensus        98 ~~~~~----~~la~~~~~~~~~~~aa~~~~~  124 (150)
T 4ga2_A           98 QKDLV----LKIAELLCKNDVTDGRAKYWVE  124 (150)
T ss_dssp             CHHHH----HHHHHHHHHHCSSSSHHHHHHH
T ss_pred             CHHHH----HHHHHHHHHcCChHHHHHHHHH
Confidence            44322    2346667778899999988875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.64  E-value=0.044  Score=42.10  Aligned_cols=100  Identities=11%  Similarity=0.024  Sum_probs=72.8

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch---h
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW---S  129 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW---~  129 (162)
                      ++..+|..|...|+.+.|.+.|.++. ......   ..+...+.++.+.. +++......+.++-.+...  .++.   .
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~--~~~~~~~~  233 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSKLAERFFSQAL-SIAPED---PFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKA--IGNEVTVD  233 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTT--TSCSCTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhh--cccccccc
Confidence            45568999999999999999999988 554332   35677777888888 9999999999999887643  2221   1


Q ss_pred             hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .....-...|..+...++|.+|.+.|-.++
T Consensus       234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          234 KWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            123445566777777888888888776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.61  E-value=0.047  Score=40.76  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=63.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|...|+.++|.+.|.++. . .........+.+.+.++.+.. +++......+.++-.+..    .+    
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~----~~----  174 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEAS-Q-DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNR----NQ----  174 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-T-CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS----CC----
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH-h-CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCc----cc----
Confidence            456778888888888888888888888 5 111223455666677777777 888888777777766521    12    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .......|..++..+++.+|...|-.++
T Consensus       175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          175 PSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2233445556666777777777776554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.58  E-value=0.19  Score=39.40  Aligned_cols=110  Identities=10%  Similarity=0.048  Sum_probs=77.9

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGIS  124 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~  124 (162)
                      +.+......+.+..+.+.|+++.|.+.|.+.. +..........+......+|.++.  +++.....++.+|-.+...  
T Consensus        71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~--  147 (293)
T 3u3w_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--  147 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred             cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh-ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence            45666667778999999999999999999999 654433332222222222444432  5889999999999886544  


Q ss_pred             CCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          125 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       125 ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .+||......-..-|..+...++|.+|-..|-.++
T Consensus       148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            67776544445566777888999999999988776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.58  E-value=0.039  Score=41.15  Aligned_cols=100  Identities=13%  Similarity=-0.061  Sum_probs=77.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh--
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS--  129 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~--  129 (162)
                      .++..+|.-|.+.|+.++|++.|.++. .....   -.++.+.+-.+-... +++......+.++-.+-.    .+..  
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p----~~~~~~  113 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAI-KKNYN---LANAYIGKSAAYRDM-KNNQEYIATLTEGIKAVP----GNATIE  113 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCS---HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHH-HhCcc---hHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCC----CcHHHH
Confidence            456669999999999999999999998 54433   456677777788888 999999999999887632    2322  


Q ss_pred             -hhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          130 -ARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       130 -rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                       .....-...|..++..++|.+|.+.|-.++.
T Consensus       114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A          114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence             2223455678888999999999999987764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.55  E-value=0.039  Score=39.67  Aligned_cols=97  Identities=5%  Similarity=-0.177  Sum_probs=72.7

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS  129 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~  129 (162)
                      --.++..+|..|.+.|++++|++.|.++. ......   .+..+.+-.+.... +++....+...+|-.+-    ..++.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~----p~~~~   90 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLDHYD---SRFFLGLGACRQAM-GQYDLAIHSYSYGAVMD----IXEPR   90 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----TTCTH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCccc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC----CCCch
Confidence            35567889999999999999999999987 433322   34556666666777 99999999999887763    22332


Q ss_pred             hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          .-.+.|..++..++|.+|.+.|-.++
T Consensus        91 ----~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           91 ----FPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             ----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                33566888999999999999887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.039  Score=40.78  Aligned_cols=98  Identities=11%  Similarity=-0.030  Sum_probs=76.0

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      ..-.++..+|..|.+.|+.+.|++.|.++. ......   .++.+.+.++.+.. +++......+.++-.+-.    .+ 
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~----~~-  206 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRAPED---ARGYSNRAAALAKL-MSFPEAIADCNKAIEKDP----NF-  206 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC-
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCccc---HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCH----HH-
Confidence            345678899999999999999999999998 544332   36777777888888 999999999999876531    12 


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                         ...-...|..+...+++.+|.+.|-.++
T Consensus       207 ---~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          207 ---VRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               2344567888889999999998887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.50  E-value=0.049  Score=35.59  Aligned_cols=94  Identities=18%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. ......   ....+.+.++.+.. +++......+.++-..-.    .+.   
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~---   69 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRS---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----RSA---   69 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHH-HcCCcc---hhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCC----Cch---
Confidence            467789999999999999999999988 543322   35666777777788 999999999998877532    222   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                       ..-...|..+...+++.+|.+.|-.+
T Consensus        70 -~~~~~l~~~~~~~~~~~~A~~~~~~~   95 (136)
T 2fo7_A           70 -EAWYNLGNAYYKQGDYDEAIEYYQKA   95 (136)
T ss_dssp             -HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             22234566777889999998887553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.47  E-value=0.048  Score=42.15  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=75.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      +.+..+|..|.+.|+++.|++.|.++. ......   .+..+.+..+.+.. +++......+.++-.+..    .+.   
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~---   71 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAV-DGDPDN---YIAYYRRATVFLAM-GKSKAALPDLTKVIALKM----DFT---   71 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCccc---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----Ccc---
Confidence            467889999999999999999999998 544332   46777888888888 999999999998877631    121   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                       ......|..++..++|.+|...|-.++.
T Consensus        72 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~   99 (359)
T 3ieg_A           72 -AARLQRGHLLLKQGKLDEAEDDFKKVLK   99 (359)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             -hHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence             3456678888889999999999877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.47  E-value=0.023  Score=42.89  Aligned_cols=97  Identities=14%  Similarity=-0.008  Sum_probs=74.1

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|..|.+.|+.+.|++.|.++. +.....   .+..+.+..+.+.. +++......+.++-..     +.+.+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~-----~~~~~~~~   74 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLE-AKKYNS---PYIYNRRAVCYYEL-AKYDLAQKDIETYFSK-----VNATKAKS   74 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCCC---STTHHHHHHHHHHT-TCHHHHHHHHHHHHTT-----SCTTTCCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc-----cCchhHHH
Confidence            46689999999999999999999988 543322   23566666777777 9999999999888773     23333344


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..-...|..++..++|.+|.+.|-.++
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~  101 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAV  101 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            455678888999999999999987664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.40  E-value=0.035  Score=45.66  Aligned_cols=107  Identities=12%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---C---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN---P---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS  124 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~  124 (162)
                      -..+..+|.-|..-|+.++|++.|.++. +-..   +   -...+....++-.+.... +++.....++.+|..+.....
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl-~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAE-ELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhcc
Confidence            3457789999999999999999999986 4210   0   011122333445555667 999999999999998865422


Q ss_pred             CCchhhhhHHHHHHHHHH--hhhhcHHHHHHHhHhhc
Q psy398          125 GGDWSARNKLKAYEGVYC--LAIRQYCRAAELFVDVI  159 (162)
Q Consensus       125 ggDW~rrnrLKvy~gl~~--l~~R~fk~AA~lfld~~  159 (162)
                      +..-......-.-.|..+  +..++|.+|-++|-.++
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal  165 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL  165 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            211111222333345444  44678999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.39  E-value=0.052  Score=39.19  Aligned_cols=27  Identities=7%  Similarity=0.062  Sum_probs=14.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|...|+.+.|.+.|.++.
T Consensus        43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~   69 (225)
T 2vq2_A           43 LAWLVRAEIYQYLKVNDKAQESFRQAL   69 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.38  E-value=0.029  Score=44.43  Aligned_cols=108  Identities=8%  Similarity=-0.001  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH---RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS  124 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~---kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~  124 (162)
                      ++....+...|..|...|++++|+++|.++. +-....|.   .......+-.+.... +++.....+..+|-.+...  
T Consensus        34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~--  109 (292)
T 1qqe_A           34 EEAADLCVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTH--  109 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH--
Confidence            3444556677889999999999999999987 54322222   344555555555566 8999999999999998655  


Q ss_pred             CCchhhhhHHHHHHHHHHhhh-hcHHHHHHHhHhhc
Q psy398          125 GGDWSARNKLKAYEGVYCLAI-RQYCRAAELFVDVI  159 (162)
Q Consensus       125 ggDW~rrnrLKvy~gl~~l~~-R~fk~AA~lfld~~  159 (162)
                      -|++..-...-.--|..+... ++|.+|...|-.++
T Consensus       110 ~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A          110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            677654444444455566665 89999988887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.37  E-value=0.032  Score=40.03  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=69.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHHhcCCH--HHHHHHHHHHHhhhhhcCCCch
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRI-AYFHGCDI--QAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv-~~f~~~d~--~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      .++..+|..|...|+.+.|+++|.++. ......   .++.+.+..+ .+.. +++  ......+.++-.+-    ..+.
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~la~~l~~~~-~~~~~~~A~~~~~~al~~~----p~~~  115 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQAL-QLRGEN---AELYAALATVLYYQA-SQHMTAQTRAMIDKALALD----SNEI  115 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCSC---HHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHC----TTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhC----CCcH
Confidence            478899999999999999999999988 433222   3456666666 4556 777  88888888877652    1232


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          ......|..++..++|.+|...|-.++
T Consensus       116 ----~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A          116 ----TALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                334456788888999999999987655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.36  E-value=0.057  Score=44.12  Aligned_cols=100  Identities=18%  Similarity=0.089  Sum_probs=69.4

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK------------SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT  117 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~------------g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~  117 (162)
                      .-.++..+|..|.+.|+++.|+++|.+++ ......            .....+.+++-.+.+.. +++.....+..+|-
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIV-SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            34567788888888888888888888877 443332            22356777777777777 88888888888887


Q ss_pred             hhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       118 ~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .+-.    .+    .+.-...|..++..++|.+|...|-.++
T Consensus       224 ~~~p----~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          224 ELDS----NN----EKGLSRRGEAHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             HHCT----TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCC----Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7621    12    2233455777778888888888776554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.35  E-value=0.12  Score=38.66  Aligned_cols=62  Identities=13%  Similarity=0.024  Sum_probs=30.9

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ++..+|..|.+.|+.+.|++.|.++. ......   .+..+.+..+-+.. +++......+.++-.+
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTY---NYAHLNRGIALYYG-GRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH-hcCccc---cHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence            44555555555555555555555555 322111   23444444444444 5555555555555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.35  E-value=0.091  Score=42.02  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK--SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS  129 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~--g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~  129 (162)
                      ..+.-+|..+...||.+.|...+.+++ ......  .....+.+.+-.+.+.. +++......+.+|-.+...  .|++.
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~   90 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ--HDVWH   90 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHh--cCcHH
Confidence            456778889999999999999999988 543222  23445566666777777 9999999999999998766  67766


Q ss_pred             hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .........|..++..++|.+|...|-.++
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666666778999999999999999887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.34  E-value=0.06  Score=40.08  Aligned_cols=96  Identities=8%  Similarity=-0.077  Sum_probs=73.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+++.|++.|.++. +.......  ...+.+-.+.+.. +++.....++.+|-.+-     .+   .
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~--~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~-----p~---~   75 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDS--VTAYNCGVCADNI-KKYKEAADYFDIAIKKN-----YN---L   75 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT-----CS---H
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCc--HHHHHHHHHHHHh-hcHHHHHHHHHHHHHhC-----cc---h
Confidence            578899999999999999999999988 54431111  4566666677777 99999999999887652     22   2


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .......|..+...++|.+|-+.|-.++
T Consensus        76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al  103 (228)
T 4i17_A           76 ANAYIGKSAAYRDMKNNQEYIATLTEGI  103 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3344567888889999999999887665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.33  E-value=0.067  Score=37.46  Aligned_cols=96  Identities=8%  Similarity=-0.164  Sum_probs=69.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|..+.+.|++++|.+.|.++. ......   .+..+.+-.+.... +++........+|-.+-    ..++. 
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~----p~~~~-   87 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALC-MLDHYD---ARYFLGLGACRQSL-GLYEQALQSYSYGALMD----INEPR-   87 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCTH-
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC----CCCcH-
Confidence            4567788999999999999999999987 433221   34555666666667 89988888888887763    12332 


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                         .-...|..++..++|.+|.+.|-.++
T Consensus        88 ---~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           88 ---FPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             ---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               34567888888999999988886543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.32  E-value=0.11  Score=40.04  Aligned_cols=98  Identities=14%  Similarity=0.021  Sum_probs=68.5

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTL------------FRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~------------iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|..|...|+.+.|.+.|.++. ....+.+...+....+            .++.+.. +++......+.++-..
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEV  149 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence            678899999999999999999999999 6666444444554444            4666666 8888888888887665


Q ss_pred             hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..    .+.    ......|..++..++|.+|...|-.++
T Consensus       150 ~~----~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~  181 (359)
T 3ieg_A          150 CV----WDA----ELRELRAECFIKEGEPRKAISDLKAAS  181 (359)
T ss_dssp             CT----TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CC----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            21    121    233445666667777777777766544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.30  E-value=0.047  Score=40.20  Aligned_cols=94  Identities=14%  Similarity=0.016  Sum_probs=58.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|...|+.+.|.+.|.++. ......   .++.+.+..+.+.. +++......+.++-....    .+.   
T Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~---  159 (243)
T 2q7f_A           92 TAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMEN---GDLFYMLGTVLVKL-EQPKLALPYLQRAVELNE----NDT---  159 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCCS---HHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCT----TCH---
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----ccH---
Confidence            456677777888888888888888776 433222   34556666666666 777777777777665521    121   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                       ......|..++..++|.+|...|-.+
T Consensus       160 -~~~~~l~~~~~~~~~~~~A~~~~~~~  185 (243)
T 2q7f_A          160 -EARFQFGMCLANEGMLDEALSQFAAV  185 (243)
T ss_dssp             -HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             13334555566666777666666544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.30  E-value=0.054  Score=40.43  Aligned_cols=98  Identities=10%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|.+.|+.++|.+.|.++. ......   .++.+.+..+.+.. +++......+.++-..     +.+ ..
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~-----~~~-~~  139 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKAL-ASDSRN---ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQD-----TLY-PE  139 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTC-----TTC-TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCc---HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhC-----ccC-cc
Confidence            3567788999999999999999999987 543322   45667777777777 8988888888887651     111 11


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ........|..++..++|.+|.+.|-.++
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            23344456777788899999998887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.24  E-value=0.068  Score=39.29  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=74.4

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|...|+.+.|++.|.++. +....   ..++.+.+.++.+.. +++......+.++-.+...    +.  
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~----~~--  125 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKAL-ELDSS---AATAYYGAGNVYVVK-EMYKEAKDMFEKALRAGME----NG--  125 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCC----SH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCc---chHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC----CH--
Confidence            4577889999999999999999999988 54332   246677778888888 9999999999998876421    22  


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ......|..++..++|.+|-+.|-.++
T Consensus       126 --~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A          126 --DLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             --HHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              234456777888999999999887654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.17  E-value=0.076  Score=38.76  Aligned_cols=92  Identities=9%  Similarity=-0.048  Sum_probs=72.0

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|..|.+.|+++.|++.|.++. +..      .++.+.+..+.+.. +++.....+..+|-.+-.    .+.    
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~----~~~----   71 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPH------SRICFNIGCMYTIL-KNMTEAEKAFTRSINRDK----HLA----   71 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-SCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH----
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-CCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc----cch----
Confidence            46789999999999999999999998 551      35777777777778 999999999998877631    222    


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ..-...|..++..++|.+|.+.|-.++.
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   99 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2334567888889999999999876653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.1  Score=42.83  Aligned_cols=99  Identities=12%  Similarity=-0.038  Sum_probs=76.8

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      +.+--+++..+|..|.+.|+++.|++.|.++. .....    ....+.+.++.+.. +++......+.++-.+-    ..
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----p~   71 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKED----PVFYSNLSACYVSV-GDLKKVVEMSTKALELK----PD   71 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-HHCCC----HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC----SC
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcc----HHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC----hH
Confidence            45566789999999999999999999999998 54432    56777788888888 99999999999887752    12


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +.    ..-...|..++..++|.+|-..|-.++
T Consensus        72 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~  100 (514)
T 2gw1_A           72 YS----KVLLRRASANEGLGKFADAMFDLSVLS  100 (514)
T ss_dssp             CH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            22    233456777888999999998886553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.14  E-value=0.26  Score=39.30  Aligned_cols=107  Identities=11%  Similarity=0.092  Sum_probs=76.8

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP--KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s--~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ....++..+|..|...|+.++|.+.|.+++ +-+..  ..+.+.....+-++.... +++......+.++..+...  .+
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~--~~  208 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGN--GK  208 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTSCGGGGHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT--SC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhhccCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc--cC
Confidence            456678889999999999999999999987 54433  333556777888888999 9999999999999988654  23


Q ss_pred             c-hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          127 D-WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       127 D-W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      + ...........+...+..+++.+|...+-.++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          209 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            2 11111111123344667899999888876654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.10  E-value=0.054  Score=46.33  Aligned_cols=101  Identities=16%  Similarity=0.043  Sum_probs=75.2

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK------------SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA  116 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~------------g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka  116 (162)
                      +.-.++..+|..|.+.|+++.|++.|.+++ ......            ..+..+.+++-.+.+.. +++.....+..+|
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a  343 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence            345578889999999999999999999988 533221            23466777777777778 9999999999888


Q ss_pred             HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      -.+-.    .+    .+.-...|..++..++|.+|...|-.++
T Consensus       344 l~~~p----~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          344 LGLDS----AN----EKGLYRRGEAQLLMNEFESAKGDFEKVL  378 (457)
T ss_dssp             HHHST----TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcCC----cc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            77631    12    2334456788888899999998887665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.10  E-value=0.12  Score=39.64  Aligned_cols=95  Identities=16%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             HHHHhhHhHHHhhc-CHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           52 GIWQAKLDYLCSIG-DRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        52 ~~~~~~a~~~~~iG-D~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .++..+|..|...| +.+.|.+.|.++. ......   .+..+.+.++.+.. +++......+.++-.+...    +   
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~----~---  158 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTY---GPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKG----C---  158 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTCTTC---THHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTT----C---
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccc----c---
Confidence            45778888999999 8999999999888 544322   34566777777777 8888888888888776321    1   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .....+.|..++..++|.+|.+.|-.++
T Consensus       159 -~~~~~~l~~~~~~~~~~~~A~~~~~~al  186 (330)
T 3hym_B          159 -HLPMLYIGLEYGLTNNSKLAERFFSQAL  186 (330)
T ss_dssp             -SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence             1223346666777777777777776554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.09  E-value=0.053  Score=36.73  Aligned_cols=68  Identities=6%  Similarity=-0.038  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      +..--.++..+|.-|.+.|++++|++.|.+++ ......   .++.+.+-.+-+.. +++......+.++-..
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNH---QALRVFYAMVLYNL-GRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            55666778888888888888888888888877 433222   45556666666666 7777777777777655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.09  E-value=0.081  Score=38.87  Aligned_cols=98  Identities=17%  Similarity=0.019  Sum_probs=75.5

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      +--+++..+|.-|.+.|++++|++.|.++. ......   .+..+.+-.+.... +++........+|-.+-    ..++
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~P~~---~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~----P~~~  104 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYDFYN---VDYIMGLAAIYQIK-EQFQQAADLYAVAFALG----KNDY  104 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----SSCC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhC----CCCc
Confidence            345689999999999999999999999988 443321   34556666666677 99999999999998873    2233


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +    .....|..++..++|.+|...|-.++
T Consensus       105 ~----~~~~lg~~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          105 T----PVFHTGQCQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             H----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3    34467888999999999999987654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.07  E-value=0.15  Score=35.18  Aligned_cols=95  Identities=9%  Similarity=-0.093  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .+.-.++..+|..|...|+++.|.+.|.++. ......   .++.+.+..+.+.. +++......+.++-.+-.    .+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~----~~   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAI-ELNPSN---AIYYGNRSLAYLRT-ECYGYALGDATRAIELDK----KY   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc----cc
Confidence            4455678999999999999999999999988 543322   56677777777788 999999999999888632    22


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                      .    ..-...|..+...++|.+|.+.|
T Consensus        81 ~----~~~~~~a~~~~~~~~~~~A~~~~  104 (166)
T 1a17_A           81 I----KGYYRRAASNMALGKFRAALRDY  104 (166)
T ss_dssp             H----HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             H----HHHHHHHHHHHHhccHHHHHHHH
Confidence            2    23445677788889999988766

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.98  E-value=0.13  Score=36.85  Aligned_cols=62  Identities=16%  Similarity=0.093  Sum_probs=29.7

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ++..+|.-|.+.|+.+.|++.+.++. ......   .+.....-.+.... +++......+.+|-.+
T Consensus        41 ~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~  102 (184)
T 3vtx_A           41 TLLKLGKTYMDIGLPNDAIESLKKFV-VLDTTS---AEAYYILGSANFMI-DEKQAAIDALQRAIAL  102 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-hcCchh---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            45556666666666666666666655 322221   12222233333334 5555555555555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.96  E-value=0.28  Score=36.94  Aligned_cols=111  Identities=11%  Similarity=-0.006  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHH
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--------------CDIQAMTAAI  113 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--------------~d~~~v~~~i  113 (162)
                      .....++..+|.-|.+.|+.++|++.|.+.. .........-+..+.+-.+-+..+              .+.....+.+
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  116 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF  116 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence            3345788999999999999999999999988 433332222223333222222110              1222333333


Q ss_pred             HHHHhhhhh-cCCC-chhhhhHH----------HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          114 EKATELIEG-ISGG-DWSARNKL----------KAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       114 ~ka~~l~e~-~~gg-DW~rrnrL----------Kvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .--+.+++. |... -|+.+.++          ....|..++..++|.+|...|-.++
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  174 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGML  174 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            333444443 2121 12222222          1456888899999999998887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.89  E-value=0.17  Score=34.95  Aligned_cols=95  Identities=14%  Similarity=-0.101  Sum_probs=71.3

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|.-+.+.|+.+.|+++|.++. ......   .+..+.+-++.+.. +++......+.+|-.+-    ..+.+   
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~----P~~~~---   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVC-QKEPER---EEAWRSLGLTQAEN-EKDGLAIIALNHARMLD----PKDIA---   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH---
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH---
Confidence            46778999999999999999999988 433221   35556666666677 99999999999887762    12222   


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                       .....|..+...++|.+|...|-.++.
T Consensus        87 -~~~~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           87 -VHAALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             345678888899999999999877653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.88  E-value=0.15  Score=41.31  Aligned_cols=102  Identities=7%  Similarity=-0.065  Sum_probs=62.9

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDA---------VFTLFRIAYFHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~---------~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      .++..+|..|.+.|+.+.|++.|.++. ............         .+.+..+.+.. +++......+.++-.+.  
T Consensus       212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~--  287 (450)
T 2y4t_A          212 EAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTE--  287 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC--
Confidence            456778888888888888888888877 443333222221         23345666666 78888777777776642  


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        ..+......+-...|..+...++|.+|-..|-.++
T Consensus       288 --p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  322 (450)
T 2y4t_A          288 --PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL  322 (450)
T ss_dssp             --CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             --CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              12322223344455666666777777777765543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.86  E-value=0.074  Score=44.48  Aligned_cols=100  Identities=11%  Similarity=-0.009  Sum_probs=67.9

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC-------------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN-------------PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA  116 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~-------------s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka  116 (162)
                      .-..+..+|..|.+.|+++.|++.|.+++ ....             -......+.+++-.+.+.. +++.....+..+|
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a  299 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Confidence            34457788888888888888888888887 4221             1234456666777777777 8888888887777


Q ss_pred             HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      -.+-     .+   ..+.-...|..++..++|.+|.+.|-.++
T Consensus       300 l~~~-----p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al  334 (370)
T 1ihg_A          300 LEID-----PS---NTKALYRRAQGWQGLKEYDQALADLKKAQ  334 (370)
T ss_dssp             HTTC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhC-----ch---hHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            6651     22   12334456777777888888888776554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.81  E-value=0.12  Score=40.62  Aligned_cols=96  Identities=15%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|..|.+.|+.++|++.|.++. ......   .++...+.++.... +++......+.++-.+-.    .+.  
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----~~~--  285 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAAL-SVRPND---YLLWNKLGATLANG-NQSEEAVAAYRRALELQP----GYI--  285 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CcH--
Confidence            3567789999999999999999999988 543322   35677777788888 999999999999877621    222  


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        .....-|..++..++|.+|...|-.++
T Consensus       286 --~~~~~l~~~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          286 --RSRYNLGISCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             --HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              234456777788999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.75  E-value=0.12  Score=41.95  Aligned_cols=97  Identities=14%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|..|.+.|+.+.|++.|.++. +.....   .+..+.+..+.+.. +++......+.++-.+-.    .+   
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~---   93 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAV-DGDPDN---YIAYYRRATVFLAM-GKSKAALPDLTKVIQLKM----DF---   93 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----Cc---
Confidence            4568889999999999999999999988 543332   66777788888888 999999999988877621    12   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                       .......|..++..++|.+|.+.|-.++.
T Consensus        94 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  122 (450)
T 2y4t_A           94 -TAARLQRGHLLLKQGKLDEAEDDFKKVLK  122 (450)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             23334567778889999999999877653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.75  E-value=0.18  Score=38.57  Aligned_cols=101  Identities=8%  Similarity=0.064  Sum_probs=70.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh-
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA-  130 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r-  130 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. .....   ..+..+.+.++.+.. +++......+.++-.+-..  ..+... 
T Consensus       207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~--~~~~~~~  279 (327)
T 3cv0_A          207 QLWNKLGATLANGNRPQEALDAYNRAL-DINPG---YVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVG--GTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTT--SCC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---CHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc--ccccccc
Confidence            457788888888889999998888877 43322   234566777777777 8888888888888776422  111111 


Q ss_pred             -----hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 -----RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 -----rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                           ........|..+...+++.+|...|-.++
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                 34455567788888999999998886554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.72  E-value=0.095  Score=41.55  Aligned_cols=95  Identities=13%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+.++|++.|.++. ......   .++...+..+.... +++......+.++-.+-.    .+    
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~----  280 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPED---YSLWNRLGATLANG-DRSEEAVEAYTRALEIQP----GF----  280 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC----Cc----
Confidence            467789999999999999999999988 544332   44667777777778 999999999998877631    22    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......-|..+...++|.+|...|-.++
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            2234456777788899999998887654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=95.69  E-value=0.15  Score=38.91  Aligned_cols=95  Identities=14%  Similarity=-0.051  Sum_probs=72.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+.++|.+.|.++. ......   .+....+.++.+.. +++......+.++-.+..    .+..  
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~----~~~~--  241 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAV-ELRPDD---AQLWNKLGATLANG-NRPQEALDAYNRALDINP----GYVR--  241 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCHH--
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC----CCHH--
Confidence            567889999999999999999999988 544332   35667777777778 999999999998877632    2222  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        .....|..++..++|.+|.+.|-.++
T Consensus       242 --~~~~l~~~~~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          242 --VMYNMAVSYSNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             --HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              33455777888999999998886654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.62  E-value=0.11  Score=41.22  Aligned_cols=95  Identities=14%  Similarity=-0.039  Sum_probs=71.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|++++|++.|.++. .....   -.++...+-.+.+.. +++......+.+|-.+-    ..++   
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~----p~~~---   72 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAI-TRNPL---VAVYYTNRALCYLKM-QQPEQALADCRRALELD----GQSV---   72 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSC----TTCH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCc---cHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCCH---
Confidence            467789999999999999999999988 53332   235566666666677 89999988888887762    2233   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       +.-...|..++..++|.+|...|-.++
T Consensus        73 -~~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           73 -KAHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             344466888889999999999887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.59  E-value=0.22  Score=37.47  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=53.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-+.+.|++++|++.|.++. .........-+..+.+..+.+.. +++....+...++-..
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence            356788999999999999999999998 54444444567788888888888 9999988888887765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.53  E-value=0.14  Score=40.60  Aligned_cols=95  Identities=15%  Similarity=-0.063  Sum_probs=74.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      ..+..+|..|.+.|++++|++.|.++. ......   .+..+.+.++.+.. +++......+.+|-.+-.    .+    
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~----  132 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAI-LQDPGD---AEAWQFLGITQAEN-ENEQAAIVALQRCLELQP----NN----  132 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC----
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----CC----
Confidence            357889999999999999999999998 544332   56778888888888 999999999999887631    12    


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ...-..-|..+...++|.+|.+.|-.++
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al  160 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWI  160 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            2233455777788999999999887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.50  E-value=0.32  Score=36.53  Aligned_cols=95  Identities=11%  Similarity=-0.037  Sum_probs=69.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|.-+.+.|++++|+..|.++. ......   .+..+.+-.+.+.. +++......+.+|-.+-    ..+.+. 
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~----P~~~~a-   75 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERAL-KENPQD---PEALYWLARTQLKL-GLVNPALENGKTLVART----PRYLGG-   75 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCcHHH-
Confidence            367889999999999999999999998 543332   35566666777777 99999999988887762    123222 


Q ss_pred             hHHHHHHHHHHhhh-----------hcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAI-----------RQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~-----------R~fk~AA~lfld~~  159 (162)
                         ....|..++..           ++|.+|...|-.++
T Consensus        76 ---~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  111 (217)
T 2pl2_A           76 ---YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE  111 (217)
T ss_dssp             ---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence               23345555666           99999998887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.11  Score=42.03  Aligned_cols=102  Identities=13%  Similarity=0.093  Sum_probs=68.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH--RIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~--kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .++..+|.-|.+.|+.++|.+.|.+++ ......+.  ..-++...  +|.++.  +++........++-....+  .++
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~  130 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVKVLKTL--IEKFEQVPDSLDDQIFVCEKSIEFAKR--EKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHHHHHHH--HHHHCSCCSCHHHHHHHHHHHHHHHHH--SSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHHHHH--hCc
Confidence            468889999999999999999999987 54433322  22222222  444442  5677777777776666544  344


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      .-.+.++...-|-.+...++|.+|.+++-+.
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDL  161 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            3345666667777788889999888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.38  E-value=0.34  Score=32.19  Aligned_cols=71  Identities=4%  Similarity=-0.121  Sum_probs=58.0

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ......++..+|.-|.+.|+.++|.+.|.++. ..........+..+.+-++-+.. +++......+.++-..
T Consensus        35 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           35 GVYTPNALYWLGESYYATRNFQLAEAQFRDLV-SRYPTHDKAAGGLLKLGLSQYGE-GKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            33345788899999999999999999999998 65555445567788888888888 9999999999888776

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.37  E-value=0.21  Score=39.14  Aligned_cols=95  Identities=14%  Similarity=-0.044  Sum_probs=73.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|+.+.|++.|.++. ......   .+..+.+.++.+.. +++......+.++-.+-.    .+.   
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----~~~---  132 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDPKH---MEAWQYLGTTQAEN-EQELLAISALRRCLELKP----DNQ---  132 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHC-cCHHHHHHHHHHHHhcCC----CCH---
Confidence            457789999999999999999999998 544332   45677778888888 999999999998877632    122   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       ..-...|..+...+++.+|.+.|-.++
T Consensus       133 -~~~~~l~~~~~~~g~~~~A~~~~~~~~  159 (368)
T 1fch_A          133 -TALMALAVSFTNESLQRQACEILRDWL  159 (368)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             233455777788999999999887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.30  E-value=0.17  Score=33.53  Aligned_cols=74  Identities=8%  Similarity=-0.018  Sum_probs=57.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|.-|.+.|+++.|++.|.++. ......   .+..+.+-.+.... +++......+.+|-.+...  .+|....
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~--~~~~~~~   80 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELV-ETDPDY---VGTYYHLGKLYERL-DRTDDAIDTYAQGIEVARE--EGTQKDL   80 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--HSCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhhc--CCchhHH
Confidence            467899999999999999999999988 543322   24667777777777 9999999999999888654  4555433


Q ss_pred             h
Q psy398          132 N  132 (162)
Q Consensus       132 n  132 (162)
                      .
T Consensus        81 ~   81 (100)
T 3ma5_A           81 S   81 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.20  E-value=0.085  Score=37.73  Aligned_cols=90  Identities=10%  Similarity=-0.010  Sum_probs=67.3

Q ss_pred             hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398           57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA  136 (162)
Q Consensus        57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv  136 (162)
                      +|..|.+.||.++|+++|.++. .   .....-...|.+-++.+.. +++....+++.+|-.+-    ..+.+    .-.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~-~---~~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~----p~~~~----a~~   69 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGST-P---SPRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQ----ERDPK----AHR   69 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHS-C---SHHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH----HHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhc-c---cCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH----HHH
Confidence            6778889999999999999998 3   2334445668888888888 99999999999998773    22332    334


Q ss_pred             HHHHHHhhhhcHHHHHHHhHhhc
Q psy398          137 YEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       137 y~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .-|..+...++|.+|...|-.++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHH
Confidence            56778888999999999987765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=95.15  E-value=0.24  Score=36.96  Aligned_cols=99  Identities=13%  Similarity=-0.063  Sum_probs=70.1

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ...--.++..+|..|...|+.+.|++.|.++. .....   ..+..+.+..+.+.. +++......+.+|-.+-.    .
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~----~  109 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRPD---MPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDP----T  109 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----T
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCCC---cHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCc----c
Confidence            34556788899999999999999999999988 54332   235666777777777 899999999988887632    1


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      +.    ......|..++..++|.+|.+.|-.+
T Consensus       110 ~~----~~~~~la~~~~~~g~~~~A~~~~~~a  137 (275)
T 1xnf_A          110 YN----YAHLNRGIALYYGGRDKLAQDDLLAF  137 (275)
T ss_dssp             CT----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cc----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            21    23334556666777777777776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.03  E-value=0.22  Score=42.09  Aligned_cols=98  Identities=9%  Similarity=-0.105  Sum_probs=62.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCC----CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADK----TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~----~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .++..+|..|++.|+.++|.+.|.++. +.    ...+....++..++..+.... +++......+.++-.+-    ..+
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~----p~~  549 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNAL-LLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLS----TND  549 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----SCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCC
Confidence            346677777888888888888888776 43    122333356777777777777 78777777777766552    112


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .    ..-..-|..+...+++.+|.+.|-.++
T Consensus       550 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          550 A----NVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             H----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            1    223344555666788888887775543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=95.00  E-value=0.13  Score=42.52  Aligned_cols=96  Identities=10%  Similarity=-0.021  Sum_probs=73.2

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG  126 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg  126 (162)
                      ..+.-+++..+|..|.+.|++++|++.|.++. ......   .+..+.+..+.+.. +++......+.++-.+-     .
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-----p   90 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELDPNE---PVFYSNISACYIST-GDLEKVIEFTTKALEIK-----P   90 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-----T
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-----C
Confidence            34566889999999999999999999999988 543222   46777778888888 99999999999887752     2


Q ss_pred             chhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          127 DWSARNKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                      ++   ...-...|..++..++|.+|...|
T Consensus        91 ~~---~~~~~~la~~~~~~g~~~~A~~~~  116 (537)
T 3fp2_A           91 DH---SKALLRRASANESLGNFTDAMFDL  116 (537)
T ss_dssp             TC---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ch---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            21   233445677788899999999887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.99  E-value=0.3  Score=41.17  Aligned_cols=101  Identities=13%  Similarity=0.014  Sum_probs=63.2

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..|++.|+.++|.+.|.++. +....   -.+....++.+.... +++......+.++-..... .|.+.+...
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~p~~~~  516 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSY-ALFQY---DPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKK-TQSNEKPWA  516 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-SCCCSGGGH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---ChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhc-cccchhhHH
Confidence            45566777777777777777777766 43222   124566666666667 7888888887777666321 022322223


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..-..-|..+...+++.+|.+.|-.++
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344455667778999999999886554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.93  E-value=0.24  Score=40.99  Aligned_cols=94  Identities=6%  Similarity=-0.060  Sum_probs=47.5

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..|.+.|+.+.|.+.|.++. ......   .+..+.+..+.+.. +++......+.++-....    .+.+   
T Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~----~~~~---  379 (537)
T 3fp2_A          312 TYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPEN---VYPYIQLACLLYKQ-GKFTESEAFFNETKLKFP----TLPE---  379 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---SHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCTH---
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CChH---
Confidence            34455555555555555555555554 322111   13344444444455 555555555555544421    1211   


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .....|..+...++|.+|.+.|-.++
T Consensus       380 -~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          380 -VPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             22334666667777777777665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.92  E-value=0.3  Score=37.23  Aligned_cols=27  Identities=4%  Similarity=-0.269  Sum_probs=13.3

Q ss_pred             HHHHhhHhHHHh----hcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCS----IGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~----iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|.+    .||.++|++.|.++.
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            344444555555    555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.91  E-value=0.13  Score=38.74  Aligned_cols=92  Identities=14%  Similarity=-0.009  Sum_probs=59.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|.-|.+.|+.++|+++|.++. .-.    .-.++.+.+-++.+.. +++......+.++-.+-    ..+.+  
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----P~~~~--  186 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQAL-ALE----DTPEIRSALAELYLSM-GRLDEALAQYAKALEQA----PKDLD--  186 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC----CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS----TTCHH--
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH-hcc----cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCChH--
Confidence            467789999999999999999999988 544    2345667777777888 99999999998887762    22332  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                        ....-|..++..+++.+|-..|-.
T Consensus       187 --~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          187 --LRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             --HHHHHHHHHTC-------------
T ss_pred             --HHHHHHHHHHHccCHHHHHHHHHH
Confidence              333457778889999999887754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.87  E-value=0.16  Score=41.62  Aligned_cols=105  Identities=8%  Similarity=-0.078  Sum_probs=65.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh-
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA-  130 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r-  130 (162)
                      .++..+|..|.+.|++++|.++|.+++ .........-.+.+..-.+..+..+++.....+..+|=.+-..  ..+|.. 
T Consensus       335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~~~  411 (472)
T 4g1t_A          335 RVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKEKM  411 (472)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHHHH
T ss_pred             hhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHH
Confidence            356789999999999999999999999 7777777777777777666665437888777777777555321  222221 


Q ss_pred             hhHH-----------------HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKL-----------------KAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrL-----------------Kvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .+.+                 -..-|..+...+++.+|.+.|-.++
T Consensus       412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            0110                 1134666677889999988886654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.84  E-value=0.091  Score=43.02  Aligned_cols=100  Identities=8%  Similarity=-0.096  Sum_probs=72.1

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH--------------RIDAVFTLFRIAYFHGCDIQAMTAAIEK  115 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~--------------kiD~~l~~iRv~~f~~~d~~~v~~~i~k  115 (162)
                      .-..+..+|..|.+.|+++.|+++|.+++ ........              +..+.+++-.+.+.. +++.....+..+
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~-g~~~~A~~~~~~  255 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT-TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            44568889999999999999999999988 54432210              113555666666666 888888888888


Q ss_pred             HHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       116 a~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      |-.+-     .+   ..+.-...|..++..++|.+|...|-.++
T Consensus       256 al~~~-----p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          256 VLTEE-----EK---NPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             HHHHC-----TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            87652     11   12344567888899999999999998765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.75  E-value=0.78  Score=34.11  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=62.3

Q ss_pred             hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH---
Q psy398           57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK---  133 (162)
Q Consensus        57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr---  133 (162)
                      +|.-|.+.|+.++|+++|.+++ ......   .+..+.+-.+-+.. +++........++-.+-  |  .+.+-.+.   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--P--~~~~a~~~lg~  130 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELL-QKAPNN---VDCLEACAEMQVCR-GQEKDALRMYEKILQLE--A--DNLAANIFLGN  130 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--T--TCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC--C--CCHHHHHHHHH
Confidence            8888888888888888888877 433221   35566666666667 88888888777776652  1  11111100   


Q ss_pred             ----------------------------HHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          134 ----------------------------LKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       134 ----------------------------LKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                                                  .....|+..+..++|.+|...|-.++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                                        112357788888999999988876653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.2  Score=40.95  Aligned_cols=100  Identities=9%  Similarity=-0.082  Sum_probs=65.0

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|..|.+.|+.+.|++.|.++. ......   .++...+..+.+.. +++......+.++-.+...  .++.....
T Consensus       340 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~--~~~~~~~~  412 (514)
T 2gw1_A          340 PYIQLACLAYRENKFDDCETLFSEAK-RKFPEA---PEVPNFFAEILTDK-NDFDKALKQYDLAIELENK--LDGIYVGI  412 (514)
T ss_dssp             HHHHHHHHTTTTTCHHHHHHHHHHHH-HHSTTC---SHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--SSSCSSCS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HHcccC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhc--cchHHHHH
Confidence            66778888888888888888888877 433221   24556666677777 8888888888888776432  22211112


Q ss_pred             HHHHHHHHHHhh---hhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLA---IRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~---~R~fk~AA~lfld~~  159 (162)
                      ..-...|..++.   .++|.+|.+.|-.++
T Consensus       413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~  442 (514)
T 2gw1_A          413 APLVGKATLLTRNPTVENFIEATNLLEKAS  442 (514)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence            234455666666   777877777765543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=94.52  E-value=0.45  Score=31.91  Aligned_cols=54  Identities=9%  Similarity=0.028  Sum_probs=24.3

Q ss_pred             hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           64 IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        64 iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .|+.++|++.|.+++ ....+.....++.+.+-.+.+.. +++......+.+|-.+
T Consensus         3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~   56 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQ   56 (117)
T ss_dssp             ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            345555555555555 43322333444444444444444 5555555555555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=94.47  E-value=0.56  Score=40.33  Aligned_cols=96  Identities=14%  Similarity=-0.051  Sum_probs=52.3

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|..|.+.|+.++|.+.|.++. ......   .+..+.+-.+.+.. +++....+.+.+|-.+-    ..+.+ 
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----p~~~~-  126 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQAS-DAAPEH---PGIALWLGHALEDA-GQAEAAAAAYTRAHQLL----PEEPY-  126 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH-
Confidence            4566666666666677777776666665 332221   33444555555555 66666666666665542    11221 


Q ss_pred             hhHHHHHHHHHHhhh---hcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAI---RQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~---R~fk~AA~lfld~~  159 (162)
                         .....|..+...   +++.+|.+.|-.++
T Consensus       127 ---~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          127 ---ITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             ---HHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence               222334444555   66777766665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=94.37  E-value=0.75  Score=36.69  Aligned_cols=93  Identities=10%  Similarity=-0.086  Sum_probs=52.2

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|.-|++.|+.+.|++.|.++. ......   .+..+.+..+-... +++......+.++-.+..    .+.+.. 
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~~~~~-  308 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHF---PDAYCNLANALKEK-GSVAEAEDCYNTALRLCP----THADSL-  308 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSC---HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHCT----TCHHHH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCc----ccHHHH-
Confidence            45567777777777777777777776 432221   24455566666666 777777777776665521    122211 


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                         ..-|..+...+++.+|.+.|-.+
T Consensus       309 ---~~l~~~~~~~g~~~~A~~~~~~a  331 (388)
T 1w3b_A          309 ---NNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             ---HHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHH
Confidence               12233444555566655555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.35  E-value=0.52  Score=31.21  Aligned_cols=65  Identities=11%  Similarity=-0.158  Sum_probs=52.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      .++..+|..|.+.|+.+.|++.|.++. ......   .+..+.+-.+.... +++......+.++-.+..
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTY---SVAWKWLGKTLQGQ-GDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcc
Confidence            578899999999999999999999988 543322   34566777777778 999999999999988754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.31  E-value=0.88  Score=38.73  Aligned_cols=95  Identities=12%  Similarity=-0.024  Sum_probs=73.9

Q ss_pred             HHHHHhhHhHHHhhcCH-HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398           51 SGIWQAKLDYLCSIGDR-AEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS  129 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~-~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~  129 (162)
                      -.++..+|..|...|++ ++|++.|.+++ .....   -.+..+.+-.+.+.. +++......+.+|-.+     ..+  
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~p~---~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~-----~p~--  169 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAV-KLEPE---LVEAWNQLGEVYWKK-GDVTSAHTCFSGALTH-----CKN--  169 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT-----CCC--
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh-----CCC--
Confidence            45778999999999999 99999999988 54332   246777777888888 9999999999888765     223  


Q ss_pred             hhhHHHHHHHHHHhhh---------hcHHHHHHHhHhhc
Q psy398          130 ARNKLKAYEGVYCLAI---------RQYCRAAELFVDVI  159 (162)
Q Consensus       130 rrnrLKvy~gl~~l~~---------R~fk~AA~lfld~~  159 (162)
                        ...-...|..+...         ++|.+|.+.|-.++
T Consensus       170 --~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al  206 (474)
T 4abn_A          170 --KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV  206 (474)
T ss_dssp             --HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence              24455567777778         99999999887765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.29  E-value=2.4  Score=37.24  Aligned_cols=116  Identities=14%  Similarity=0.081  Sum_probs=83.7

Q ss_pred             hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q psy398           41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKA  116 (162)
Q Consensus        41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka  116 (162)
                      .-+|.+--.+-..+..+|.-|...|++++|...|.++++  .+..+..|. |+..++..+|..+.  +++......+.+|
T Consensus       341 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          341 PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            677844567888899999999999999999999998651  234555552 44555555554443  8999999999999


Q ss_pred             HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                      -...+.--|.|=-.-..+..-.+-..+..|.|++|-.+|-.
T Consensus       420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~  460 (490)
T 3n71_A          420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK  460 (490)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876533444333445666677777888889988877653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.27  E-value=0.54  Score=37.04  Aligned_cols=64  Identities=14%  Similarity=0.033  Sum_probs=45.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+|..+|.++.+.|+.++|.+.|.+++ .-......  .+.....++-... +++....+...+|-.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~--~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPT--LVYIQYMKFARRA-EGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTH--HHHHHHHHHHHHH-HCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH-hccccCcc--HHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence            467889999999999999999999988 53322111  1555556665566 7887777777777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.23  E-value=0.32  Score=30.22  Aligned_cols=65  Identities=20%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .-.++..+|..|.+.|+.+.|++.|.+++ ......   .+..+.+-.+.+.. +++......+.++-.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNN---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc
Confidence            34678899999999999999999999988 543322   35666777777777 9999999999988776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.18  E-value=1.2  Score=33.79  Aligned_cols=106  Identities=9%  Similarity=-0.035  Sum_probs=73.0

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC-------h--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP-------K--SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s-------~--g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      -..+..+|.-+.+.|++++|+++|++++ .....       .  +....+..+.-.+-.-. +++........+|=.+..
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhh
Confidence            3457889999999999999999999988 65544       1  12233555555555666 899999999888888722


Q ss_pred             hcC--CCchhhhhHHH--HHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          122 GIS--GGDWSARNKLK--AYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       122 ~~~--ggDW~rrnrLK--vy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ..+  ..||. ..-.+  ...|+.+...++|.+|-..|-.++
T Consensus        89 ~~~e~~pd~~-~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           89 RRGELNQDEG-KLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHCCTTSTHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCCCchH-HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            100  12321 11111  346899999999999999986654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.13  E-value=0.56  Score=30.34  Aligned_cols=64  Identities=14%  Similarity=-0.036  Sum_probs=52.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|..|...|+.+.|.+.|.++. ......   .+..+.+.++.+.. +++......+.++-.+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDPAY---SKAYGRMGLALSSL-NKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHH-hcCccC---HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Confidence            3467889999999999999999999988 543332   45667777788888 9999999999998876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.11  E-value=0.87  Score=33.84  Aligned_cols=95  Identities=7%  Similarity=-0.042  Sum_probs=69.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHH----------------HHHHHHHhcCCHHHHHHHHHH
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFT----------------LFRIAYFHGCDIQAMTAAIEK  115 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~----------------~iRv~~f~~~d~~~v~~~i~k  115 (162)
                      +.+..+|.-+.+.|+++.|++.|.++. .....   -.+..+.                +-.+.+.. +++......+.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~   79 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTI-ALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence            356778999999999999999999988 43221   2334444                66666777 999999888888


Q ss_pred             HHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       116 a~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      |-.+-    ..+.+    .....|..++..++|.+|...|-.++
T Consensus        80 al~~~----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al  115 (208)
T 3urz_A           80 LLQKA----PNNVD----CLEACAEMQVCRGQEKDALRMYEKIL  115 (208)
T ss_dssp             HHHHC----TTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHC----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            87762    22332    33345778888999999999887664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=94.07  E-value=0.35  Score=38.65  Aligned_cols=64  Identities=14%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|.-|.+.|+.++|++.|.++. .....   ..+..+.+..+-+.. +++....+...++-.+
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKPD---FIDGYINLAAALVAA-GDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCcc---hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            3478889999999999999999999987 43222   234556666666666 7777777777666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=94.06  E-value=0.11  Score=44.79  Aligned_cols=95  Identities=12%  Similarity=-0.053  Sum_probs=48.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|.-|.+.|++++|++.|.++. ......   ....+.+-.+.... +++....+.+.+|-.+-    ..+.+.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~---~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~----p~~~~~  110 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKY---IKGYYRRAASNMAL-GKFRAALRDYETVVKVK----PHDKDA  110 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS----TTCTTH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHHH
Confidence            3456667777777777777777777766 432221   23444455555555 67777777776666552    122222


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhH
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFV  156 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfl  156 (162)
                      .+.+  .....++..++|.+|.+++-
T Consensus       111 ~~~l--~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          111 KMKY--QECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHH--HHHHHHHHHHHHCCC-----
T ss_pred             HHHH--HHHHHHHHHHHHHHHhcccc
Confidence            2211  12222555677776666553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.05  E-value=0.4  Score=32.42  Aligned_cols=82  Identities=13%  Similarity=0.031  Sum_probs=60.1

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCC----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKT----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS  129 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~  129 (162)
                      ...+|.++.+.||++.|...|..++ ...    .+.-.+.++...+...-+.. +++.....+..+|-.+-    ..+-.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al-~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~----P~~~~   81 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELD----PEHQR   81 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHH-HhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC----CCCHH
Confidence            4589999999999999999999987 422    12235678888888888888 99999999999987762    22333


Q ss_pred             hhhHHHHHHHHH
Q psy398          130 ARNKLKAYEGVY  141 (162)
Q Consensus       130 rrnrLKvy~gl~  141 (162)
                      -.+-++.|+-+.
T Consensus        82 ~~~n~~~~~~~~   93 (104)
T 2v5f_A           82 ANGNLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHH
Confidence            344445666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=93.88  E-value=0.49  Score=43.53  Aligned_cols=96  Identities=11%  Similarity=-0.033  Sum_probs=61.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|.-|.+.|++++|+++|.+++ .....   -.+..+++-.+-... +++....+...+|-++-    ..+.+-
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l~P~---~~~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l~----P~~~~a  113 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAI-RISPT---FADAYSNMGNTLKEM-QDVQGALQCYTRAIQIN----PAFADA  113 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHHH
Confidence            4677778888888888888888888776 43221   134555666666666 77777777777776652    122222


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          -...|..+...++|.+|.+.|-.++
T Consensus       114 ----~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A          114 ----HSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             ----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                2234666777888888888776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.50  E-value=0.88  Score=34.52  Aligned_cols=93  Identities=15%  Similarity=0.012  Sum_probs=63.2

Q ss_pred             HHHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhh
Q psy398           50 VSGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        50 Ir~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l~e  121 (162)
                      --.++..+|..|.+    .||.++|++.|.++. +..     -.+..+.+-.+-..    . +|+.....++.+|-.+  
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~-----~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~--  143 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK-----YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDL--  143 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT-----CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC-----CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhc--
Confidence            34677888888888    888888988888888 542     23455555555555    6 7888777777777653  


Q ss_pred             hcCCCchhhhhHHHHHHHHHHhh----hhcHHHHHHHhHhhc
Q psy398          122 GISGGDWSARNKLKAYEGVYCLA----IRQYCRAAELFVDVI  159 (162)
Q Consensus       122 ~~~ggDW~rrnrLKvy~gl~~l~----~R~fk~AA~lfld~~  159 (162)
                          ++..    ....-|..+..    .+++.+|.+.|-.++
T Consensus       144 ----~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  177 (273)
T 1ouv_A          144 ----NDGD----GCTILGSLYDAGRGTPKDLKKALASYDKAC  177 (273)
T ss_dssp             ----TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             ----CcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence                2322    22344666665    788888888887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.45  E-value=1.1  Score=29.93  Aligned_cols=69  Identities=9%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ......++..+|..|...|++++|++.|.++. ......   .+..+.+..+.+.. +++......+.++-.+-
T Consensus        61 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EKDGGD---VKALYRRSQALEKL-GRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSCC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hhCccC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC
Confidence            44567889999999999999999999999988 543322   56677777788888 99999999999988763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.31  E-value=0.7  Score=36.72  Aligned_cols=56  Identities=5%  Similarity=0.017  Sum_probs=32.5

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      +..+|.-|.+.|+.++|+++|.+         +.-.++.+.+.++.+.. +++....+.+.++..+
T Consensus       104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A          104 LLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKL-DRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhh
Confidence            44445555555555555554443         12245666666776666 7777777777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.29  E-value=0.56  Score=37.28  Aligned_cols=97  Identities=9%  Similarity=0.002  Sum_probs=62.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      +++..+|.-|.+.|+.+.|.+.|.++. ..... .....+....+.+..-. +++......+.++-...    +.++   
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~-~~~p~-~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~----p~~~---  200 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQ-DQDED-ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC----SPTL---  200 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT-CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS----CCCH---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCcC-cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC----CCcH---
Confidence            467789999999999999999999988 44321 11223333333443333 55666666666555441    2233   


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .+-.-.|+.++..++|.+|-..|-.++
T Consensus       201 -~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          201 -LLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             244456778888899999988887765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.16  E-value=0.58  Score=38.65  Aligned_cols=97  Identities=10%  Similarity=0.008  Sum_probs=64.3

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .+.....|..+.+-|++++|.+.|.... .  ..+++.  ..+..-.+.+.. ++|..+.+++.++-..      .|-..
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~-~--~~p~~~--~~~~~a~l~~~~-~r~~dA~~~l~~a~~~------~d~~~  169 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAP-V--AGSEHL--VAWMKAVVYGAA-ERWTDVIDQVKSAGKW------PDKFL  169 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSC-C--TTCHHH--HHHHHHHHHHHT-TCHHHHHHHHTTGGGC------SCHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHH-h--cCCchH--HHHHHHHHHHHc-CCHHHHHHHHHHhhcc------CCccc
Confidence            3445567788888888888888887776 4  334555  666666677777 8888888888643221      12222


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .+-..++-|..+-..++|.+|-..|-.++
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            34566777777777777777777766554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.99  E-value=1.2  Score=37.82  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHhhhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDI---------QAMTAAIEKATELIEG  122 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~---------~~v~~~i~ka~~l~e~  122 (162)
                      .++..+|..|.+.|++++|.++|.+++ .....  .  +.   ...+|..+ ...         ....+.+.-.+..++.
T Consensus       138 ~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~--~--~~---~~~lg~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          138 EAWNQLGEVYWKKGDVTSAHTCFSGAL-THCKN--K--VS---LQNLSMVL-RQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-TTCCC--H--HH---HHHHHHHH-TTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC--H--HH---HHHHHHHH-HHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence            478899999999999999999999999 66543  2  33   23344444 333         3333333333333332


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhh--------hcHHHHHHHhHhhc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAI--------RQYCRAAELFVDVI  159 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~--------R~fk~AA~lfld~~  159 (162)
                       ...+..    .-...|..++..        ++|.+|.+.|-.++
T Consensus       209 -~p~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          209 -DVLDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             -CTTCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             -CCCCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence             012332    223445555566        88999998887664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=92.88  E-value=1.3  Score=31.08  Aligned_cols=65  Identities=15%  Similarity=-0.020  Sum_probs=53.7

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      -.++..+|.-|.+.|+++.|++.|.+++ ......   .+..+.+-.+.+.. +++.....++.++-.+-
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELAT-VVDPKY---SKAWSRLGLARFDM-ADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC
Confidence            3578899999999999999999999988 543322   46677777777788 99999999999998874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.87  E-value=1.3  Score=36.99  Aligned_cols=98  Identities=10%  Similarity=0.094  Sum_probs=76.2

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh-hhh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS-ARN  132 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~-rrn  132 (162)
                      +.-+|.-|...||.++|++.+.+.+ +... ...-+++....+++.+.. +..+...+.+.+.++..+   +..|. -.-
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i-~~~~-~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~~~~---d~~~~~d~~  176 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGI-DNDE-AEGTTELLLLAIEVALLN-NNVSTASTIFDNYTNAIE---DTVSGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH-TSSC-STTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSC---HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh-ccCC-CcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCc---cccccchHH
Confidence            4578888999999999999999998 5443 257899999999999999 999999999999887632   01154 345


Q ss_pred             HHHHHHHHHHhhhh--cHHHHHHHhHh
Q psy398          133 KLKAYEGVYCLAIR--QYCRAAELFVD  157 (162)
Q Consensus       133 rLKvy~gl~~l~~R--~fk~AA~lfld  157 (162)
                      .+...+|...|.++  ++..|-..|=+
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~E  203 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEE  203 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            67777787777777  78888766654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=92.82  E-value=1.1  Score=38.49  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..|.+.|++++|.+.|.++. +.....   .+..+.+-.+.... +++....+.+.+|-.+-.    .+.+  
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~~~--   92 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGH---PEAVARLGRVRWTQ-QRHAEAAVLLQQASDAAP----EHPG--   92 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----CCHH--
Confidence            578899999999999999999999999 544332   45667777777788 999999999999887632    2332  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                        .....|..++..++|.+|.+.|-.+
T Consensus        93 --~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           93 --IALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             --HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              3345577788899999999888654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.68  E-value=0.95  Score=41.63  Aligned_cols=96  Identities=14%  Similarity=0.007  Sum_probs=64.1

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -+++..+|.-|.+.|+.++|+++|.++. +....   -.+...++-.+-... +++....+...+|-.+-    ..+.+-
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~l~P~---~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~----P~~~~a  147 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPA---FADAHSNLASIHKDS-GNIPEAIASYRTALKLK----PDFPDA  147 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----SCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCChHH
Confidence            5678888888888888888888888877 43322   145566666666667 78888888877776652    123222


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                          ....|..+...+++.+|.+.|-.++
T Consensus       148 ----~~~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A          148 ----YCNLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             ----HHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             ----HhhhhhHHHhcccHHHHHHHHHHHH
Confidence                2234556667788888877765543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=92.67  E-value=0.96  Score=29.26  Aligned_cols=66  Identities=8%  Similarity=-0.029  Sum_probs=52.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC----ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTN----PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~----s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. ....    ......++.+.+..+.+.. +++......+.++-.+
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKE-EKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH-hhccccchhHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence            567889999999999999999999988 4321    1112266777777777777 9999999999988875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.66  E-value=0.75  Score=29.46  Aligned_cols=63  Identities=21%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. ......   ....+.+.++.+.. +++......+.++-.+
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNN---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Confidence            467789999999999999999999988 543322   35666777777777 9999999999888776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=92.63  E-value=1  Score=31.10  Aligned_cols=65  Identities=11%  Similarity=-0.058  Sum_probs=51.1

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..++..+|.-|.+.|+++.|+++|.++. ......   .+..+.+-.+-+.. +++......+.++-.+.
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGA-LMDINE---PRFPFHAAECHLQL-GDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence            3467889999999999999999999988 433221   23456666667777 99999999999998874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.23  E-value=0.63  Score=36.66  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=56.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..+..+|.++.+.|+.++|...|.++. ..+ .++....++....+++-..+ +++..+.....+|-.+.
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~~l~p~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH-HSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence            467788999999999999999999999 654 45556678888888888888 99999999999888764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=92.05  E-value=0.88  Score=30.39  Aligned_cols=64  Identities=9%  Similarity=0.003  Sum_probs=52.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      .++..+|.-|.+.|+.+.|++.|.++. ......   .+..+.+-.+-+.. +++......+.++-.+-
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDPNF---VRAYIRKATAQIAV-KEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHH-hCHHHHHHHHHHHHHhC
Confidence            678899999999999999999999988 543322   45566677777777 99999999999988874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=91.96  E-value=1.2  Score=32.29  Aligned_cols=65  Identities=9%  Similarity=-0.105  Sum_probs=51.1

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..+|..+|.-|.+.|++++|+++|.++. .-....   .+..+++-.+-+.. +++........+|-.+.
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al-~l~P~~---~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAF-ALGKND---YTPVFHTGQCQLRL-KAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSSSC---CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHH-hhCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence            4578899999999999999999999987 433221   24556666666667 99999999999998873

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=91.91  E-value=1.3  Score=34.75  Aligned_cols=101  Identities=11%  Similarity=0.047  Sum_probs=61.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL------------  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l------------  119 (162)
                      +++..+|.-+.+.||.+.|...|.+++ ......   .+..+.+.++.+.. +++......+.++-..            
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~la~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAW-QLSNQN---GEIGLLLAETLIAL-NRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTSC---HHHHHHHHHHHHHT-TCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCcc---hhHHHHHHHHHHHC-CCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            345667777777777777777777766 332221   25566666666666 7776666666554221            


Q ss_pred             ---hhhcCCCchh--------------hhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          120 ---IEGISGGDWS--------------ARNKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       120 ---~e~~~ggDW~--------------rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                         ...  | +.+              .........|..++..+++.+|...|...+.
T Consensus       193 ~~l~~~--~-~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          193 IELLXQ--A-ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             HHHHHH--H-TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhh--c-ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence               111  0 000              0122344567788889999999999887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=91.77  E-value=1.7  Score=32.49  Aligned_cols=27  Identities=22%  Similarity=-0.026  Sum_probs=19.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .++..+|..|...||.++|++.|.++.
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~   45 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAA   45 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            456667777777777777777777766

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=91.74  E-value=1.5  Score=30.16  Aligned_cols=64  Identities=11%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      -.++..+|.-|.+.|+.++|++.|.+++ +.....   .+..+.+-.+-+.. +++......+.+|-.+
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCI-RLDSKF---IKGYIRKAACLVAM-REWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhhhhh---hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence            3578899999999999999999999988 533222   34566677777777 9999999999998876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.57  E-value=2.8  Score=33.89  Aligned_cols=90  Identities=10%  Similarity=-0.017  Sum_probs=64.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..++..+|.-|.+.|++++|+++|.+++ ......   ....+.+-.+.+.. +++......+.+|-.+--    .+.. 
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P----~~~~-  265 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKAL-ELDSNN---EKGLSRRGEAHLAV-NDFELARADFQKVLQLYP----NNKA-  265 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS----SCHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCC----CCHH-
Confidence            4789999999999999999999999998 544322   35666777777777 999999999999988731    2222 


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHH
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAE  153 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~  153 (162)
                         .....|..+...+++.+|.+
T Consensus       266 ---a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          266 ---AKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Confidence               22233444555667776644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=91.47  E-value=1.1  Score=28.29  Aligned_cols=64  Identities=9%  Similarity=0.006  Sum_probs=50.9

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|..|.+.|+.+.|.+.|.++. ......   ....+.+..+.... +++......+.++-.+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKPDW---GKGYSRKAAALEFL-NRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHc
Confidence            3467889999999999999999999988 544332   34566667777777 9999999999888765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=91.01  E-value=2.5  Score=30.15  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=54.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      -.++..+|..|.+.|+.++|+++|.++. .....+  ..-.....+...-.. .+.. ....+.++-.+-    ..+   
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~--~~~~~~~~~~~~~~~-~~~~-a~~~~~~al~~~----P~~---  107 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIP-LEYQDN--SYKSLIAKLELHQQA-AESP-ELKRLEQELAAN----PDN---  107 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCC-GGGCCH--HHHHHHHHHHHHHHH-TSCH-HHHHHHHHHHHS----TTC---
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhh-hccCCh--HHHHHHHHHHHHhhc-ccch-HHHHHHHHHHhC----CCC---
Confidence            3578899999999999999999999987 433221  121111111111111 2211 123333333321    112   


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                       .......|..++..++|.+|...|-.++
T Consensus       108 -~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A          108 -FELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             2344556777888888888888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.00  E-value=1.2  Score=30.59  Aligned_cols=78  Identities=10%  Similarity=0.026  Sum_probs=50.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      .++..+|.-|.+.|++++|++.|.+++ +-. ........+.-...++|..+.  +++.....+..+|-..     ..|.
T Consensus        43 ~~~~nlg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~~~~  116 (127)
T 4gcn_A           43 TFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE-----FRDP  116 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCCH
T ss_pred             HHHHhHHHHHHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCH
Confidence            478899999999999999999999987 421 111111223334445554432  7888888888877543     2354


Q ss_pred             hhhhHHH
Q psy398          129 SARNKLK  135 (162)
Q Consensus       129 ~rrnrLK  135 (162)
                      +...+|+
T Consensus       117 ~~~~~l~  123 (127)
T 4gcn_A          117 ELVKKVK  123 (127)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=90.65  E-value=0.97  Score=29.53  Aligned_cols=64  Identities=11%  Similarity=0.010  Sum_probs=51.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|..|...|+.+.|++.|.++. .....   .....+.+..+.+.. +++......+.++-.+
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECI-QLEPT---FIKGYTRKAAALEAM-KDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCC---chHHHHHHHHHHHHH-hhHHHHHHHHHHHHHh
Confidence            4578899999999999999999999988 54322   234666777777777 9999999999988776

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=90.43  E-value=1.3  Score=29.54  Aligned_cols=65  Identities=11%  Similarity=0.075  Sum_probs=52.7

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..++..+|..|...|+.+.|++.|.++. .....   -....+.+-.+.+.. +++......+.++-.+-
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           43 AVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQ---SVKAHFFLGQCQLEM-ESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCch---hHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHC
Confidence            3578899999999999999999999988 54322   244667777777778 99999999999998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.70  E-value=2.2  Score=37.39  Aligned_cols=81  Identities=14%  Similarity=0.067  Sum_probs=54.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      ..|..+|+++.+.|+++.|.+||.++. ++.           .+.++.... +|.+.+.+....|+.      .|+... 
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~-d~~-----------~l~~l~~~~-~~~~~~~~~~~~a~~------~~~~~~-  741 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAH-DLE-----------SLFLLHSSF-NNKEGLVTLAKDAET------TGKFNL-  741 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-CHH-----------HHHHHHHHT-TCHHHHHHHHHHHHH------TTCHHH-
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcc-Chh-----------hhHHHHHHc-CCHHHHHHHHHHHHH------cCchHH-
Confidence            467899999999999999999999998 532           233444446 777765544333333      345432 


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                           +. ..++..+++.+|.+++.++
T Consensus       742 -----A~-~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          742 -----AF-NAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             -----HH-HHHHHHTCHHHHHHHHHHT
T ss_pred             -----HH-HHHHHcCCHHHHHHHHHHc
Confidence                 22 2245578888888888765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=89.23  E-value=4.8  Score=29.03  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-|.+.|+++.|++.|.+++ ......   ....+.+-.+.+.. +++......+.+|-.+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVL-KIDKNN---VKALYKLGVANMYF-GFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHH
Confidence            678899999999999999999999988 543322   35566777777777 9999999999998876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=89.17  E-value=4.4  Score=28.50  Aligned_cols=65  Identities=12%  Similarity=-0.024  Sum_probs=51.2

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      -.++..+|.-|.+.|+.++|+++|.++. .-....   .+..+.+-.+.+.. +++......+.+|-.+.
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGA-VMDIXE---PRFPFHAAECLLQX-GELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCC---chHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence            3467789999999999999999999987 432211   24566667777777 99999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=88.85  E-value=1.5  Score=37.67  Aligned_cols=94  Identities=10%  Similarity=-0.088  Sum_probs=70.4

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      +--.++..+|..|.+.|++++|++.|.+++ +.....   .+....+-.+.+.. +++........+|-.+-    ..+.
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~----p~~~   74 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAI-ELNPSN---AIYYGNRSLAYLRT-ECYGYALGDATRAIELD----KKYI   74 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSC----TTCH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCCH
Confidence            344567889999999999999999999988 543332   56667777777778 99999999999988762    1222


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                          ..-...|..++..++|.+|.+.|
T Consensus        75 ----~~~~~lg~~~~~~g~~~eA~~~~   97 (477)
T 1wao_1           75 ----KGYYRRAASNMALGKFRAALRDY   97 (477)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHH
Confidence                23335577788889998887765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=88.73  E-value=4.2  Score=34.39  Aligned_cols=64  Identities=8%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|.-|.+.|+++.|++.|.+++ .....   -....+.+-++.+.. +++......+.+|-.+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~---~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKAL-GLDSA---NEKGLYRRGEAQLLM-NEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCc---cHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence            5788999999999999999999999988 54332   245566777777777 9999999999999887

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.51  E-value=1.1  Score=40.28  Aligned_cols=25  Identities=12%  Similarity=-0.223  Sum_probs=19.2

Q ss_pred             HHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          136 AYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       136 vy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ...|..++..++|.+|...|-.++.
T Consensus       538 ~~lg~~~~~~g~~~~A~~~~~~al~  562 (681)
T 2pzi_A          538 FGLARARSAEGDRVGAVRTLDEVPP  562 (681)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhcc
Confidence            4557778888999999988876653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=88.46  E-value=7.6  Score=33.94  Aligned_cols=102  Identities=9%  Similarity=0.002  Sum_probs=71.6

Q ss_pred             hhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           56 AKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        56 ~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      +.+.-+.+-|++++|...|.++++  .+..+..|  .+.+.-++..+.... ++|.....+..+|=...++.-|.+  ..
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~--Hp  390 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHN--NA  390 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTT--CH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCC--CH
Confidence            455667788999999999988651  35555555  566666677777777 999999999998887765522333  22


Q ss_pred             hHHHHH--HHHHHhhhhcHHHHHHHhHhhcc
Q psy398          132 NKLKAY--EGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       132 nrLKvy--~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      .-...|  -|..+..+|+|.+|-.+|-.++.
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            233333  45566679999999999987764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=88.39  E-value=1.4  Score=30.05  Aligned_cols=79  Identities=9%  Similarity=-0.098  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy398           31 RLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMT  110 (162)
Q Consensus        31 ~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~  110 (162)
                      -+..++.-++.+-.  .   -.++..+|.-|.+.|+.+.|+++|.++. ......   .+..+.+-.+-... +++....
T Consensus        36 A~~~~~~al~~~P~--~---~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~---~~~~~~la~~~~~~-g~~~~A~  105 (121)
T 1hxi_A           36 AALAFEAVCQKEPE--R---EEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKD---IAVHAALAVSHTNE-HNANAAL  105 (121)
T ss_dssp             HHHHHHHHHHHSTT--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHH
Confidence            33445555553333  3   3578899999999999999999999988 543322   23445555555555 6666666


Q ss_pred             HHHHHHHhh
Q psy398          111 AAIEKATEL  119 (162)
Q Consensus       111 ~~i~ka~~l  119 (162)
                      ..+.++-.+
T Consensus       106 ~~~~~al~~  114 (121)
T 1hxi_A          106 ASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHh
Confidence            666665443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=88.23  E-value=0.97  Score=38.04  Aligned_cols=79  Identities=13%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             HHHHhhHhHHHhh-----cCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhhhhcCC
Q psy398           52 GIWQAKLDYLCSI-----GDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF-HGCDIQAMTAAIEKATELIEGISG  125 (162)
Q Consensus        52 ~~~~~~a~~~~~i-----GD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f-~~~d~~~v~~~i~ka~~l~e~~~g  125 (162)
                      .+|.-+|-+|.+.     ||.++|.+.|++++ .-+  +++.+|.-...-+.-.. . +|.....+++++|-...-. ..
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL-~Ln--P~~~id~~v~YA~~l~~~~-gd~~~a~~~L~kAL~a~p~-~~  274 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT-RYC--SAHDPDHHITYADALCIPL-NNRAGFDEALDRALAIDPE-SV  274 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH-HHC--CTTCSHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHCCGG-GC
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH-HhC--CCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCC-CC
Confidence            3788999999995     99999999999999 543  34556666666664444 4 8999999999999998542 02


Q ss_pred             CchhhhhHHH
Q psy398          126 GDWSARNKLK  135 (162)
Q Consensus       126 gDW~rrnrLK  135 (162)
                      .+|.--|.+.
T Consensus       275 P~~~lan~~~  284 (301)
T 3u64_A          275 PHNKLLVILS  284 (301)
T ss_dssp             SSCHHHHHHH
T ss_pred             CChhHHHHHH
Confidence            5676444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=87.71  E-value=1.7  Score=36.79  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..+...++++.+.|+.++|...|.++. ..+ .++....++....+++-..+ ||...+.+...++....
T Consensus       426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al-~~~~~~~~~~~~lw~~~~~~e~~~-G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          426 EYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHH-HSCCSCGGGCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHhhHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence            456778888888999999999999988 554 45556777888888888888 89999988888887775

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=87.29  E-value=3  Score=29.08  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..++..+|.-|.+.|+++.|+..|.+++ ......   ....+.+-.+-+.. +++......+.+|-.+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVL-KREETN---EKALFRRAKARIAA-WKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcc---hHHHHHHHHHHHHH-hcHHHHHHHHHHHHhc
Confidence            3578899999999999999999999988 543221   34566666666677 9999999999999887

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=87.21  E-value=4  Score=25.73  Aligned_cols=61  Identities=18%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRID-AVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD-~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ...+|.-|.+.|+++.|++.|.++. ......   .+ ..+.+-.+.+.. +++........+|-.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFL-QTEPVG---KDEAYYLMGNAYRKL-GDWQKALNNYQSAIEL   64 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHH-HHCSST---HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence            4568899999999999999999988 543322   23 556666666677 9999999999988876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=86.76  E-value=3.5  Score=34.85  Aligned_cols=64  Identities=14%  Similarity=0.023  Sum_probs=43.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ..|..+|.++.+.|+.++|.+.|.+++ ...... . -.+.....++-.-. +++....+.+.+|-..
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~-~-~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLL-AIEDID-P-TLVYIQYMKFARRA-EGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HSSSSC-H-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHh-CccccC-c-hHHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence            457788999999999999999999998 533221 1 13445555554445 6666777777766554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=86.70  E-value=2.6  Score=26.74  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=28.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK   85 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~   85 (162)
                      .++..+|.-|.+.|+.+.|++.|.+++ ......
T Consensus        39 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~   71 (111)
T 2l6j_A           39 VGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSST
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc
Confidence            567899999999999999999999998 665544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=86.57  E-value=6  Score=29.79  Aligned_cols=83  Identities=19%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhh
Q psy398           66 DRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAI  145 (162)
Q Consensus        66 D~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~  145 (162)
                      +.+.+.+.|.+..+....++..++....++++    - .+...+.+.|.--+.+++.  + +++++.-.--|-|+.++-.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S-~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl   84 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----S-KYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----C-SSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----C-CCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHc
Confidence            45666677776652234666777777776666    2 6677777888777777775  2 2433333335777888888


Q ss_pred             hcHHHHHHHhH
Q psy398          146 RQYCRAAELFV  156 (162)
Q Consensus       146 R~fk~AA~lfl  156 (162)
                      ++|.+|-+.|=
T Consensus        85 ~~Y~~A~~y~~   95 (152)
T 1pc2_A           85 KEYEKALKYVR   95 (152)
T ss_dssp             SCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            88888776653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.73  E-value=1.5  Score=39.56  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398           91 AVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus        91 ~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +.-.++|..+.. +++....+.|.|+. .++.  .....-..|++.|.|.-.+.+++|.+|.+.|..++
T Consensus       233 l~nllLRnYL~~-~~y~qA~~lvsk~~-fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~  297 (523)
T 4b4t_S          233 LINLILRDFLNN-GEVDSASDFISKLE-YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI  297 (523)
T ss_dssp             HHHHHHHHHHHS-SCSTTHHHHHHHHC-SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcc-CcHHHHHHHHhcCc-CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            555789999999 99999999999996 5553  34555678999999999999999999999998865

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=84.04  E-value=11  Score=27.88  Aligned_cols=97  Identities=14%  Similarity=-0.023  Sum_probs=61.8

Q ss_pred             HHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhhh
Q psy398           51 SGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        51 r~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      ..++..+|..|..    .+|.+.|++.|.++. +...+. ...+.++.+-.+-..    . .|+.....+..+|-.+   
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~-~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~---  158 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDSESD-AAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGSSSL---  158 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSH-HHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCc-chHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHc---
Confidence            3477888988887    789999999999998 554321 224445554444444    3 6788888888888665   


Q ss_pred             cCCCchhhhhHHHHHHHHHHhh------hhcHHHHHHHhHhhc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLA------IRQYCRAAELFVDVI  159 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~------~R~fk~AA~lfld~~  159 (162)
                        +++-.....    -|..++.      .+|+.+|...|-.++
T Consensus       159 --~~~~~a~~~----Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          159 --SRTGYAEYW----AGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             --SCTTHHHHH----HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             --CCCHHHHHH----HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence              233332222    2333332      238888888876543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=83.59  E-value=10  Score=32.61  Aligned_cols=94  Identities=7%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             hcCHHHHHHHHHHhcC--CCCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH--H
Q psy398           64 IGDRAEAFKLADSKFA--DKTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA--Y  137 (162)
Q Consensus        64 iGD~~~A~~ay~~~~~--~~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv--y  137 (162)
                      .|++++|++.|.++++  .+..+..|  .+...-++..+.... ++|.....+..++=...++.-|.+  .-.-...  -
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~--Hp~~a~~l~n  387 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVY--SLNVASMWLK  387 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence            4778888888887551  25555555  344455555566666 888888888888877765422332  1222222  2


Q ss_pred             HHHHHhhhhcHHHHHHHhHhhcc
Q psy398          138 EGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       138 ~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      -|..+..+++|.+|..+|-.++.
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHH
Confidence            45566678999999888877653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=83.42  E-value=18  Score=29.81  Aligned_cols=95  Identities=11%  Similarity=-0.087  Sum_probs=66.4

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .....++..+|.-|.+.|++++|++.|.+++ +....   .....+.+-.+.+.. +++....+++.+|-.+--    .+
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~---~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P----~~  340 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEAL-EIDPS---NTKALYRRAQGWQGL-KEYDQALADLKKAQEIAP----ED  340 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-HhCch---hHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----CC
Confidence            4445788999999999999999999999999 65432   245566666666777 999999999999988732    23


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELF  155 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lf  155 (162)
                      .+-+    ...+......+++++|.+..
T Consensus       341 ~~~~----~~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          341 KAIQ----AELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            3222    22333344456676665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=82.38  E-value=11  Score=32.42  Aligned_cols=81  Identities=14%  Similarity=0.109  Sum_probs=59.2

Q ss_pred             hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q psy398           41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKA  116 (162)
Q Consensus        41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka  116 (162)
                      .-+|.+--++-..+..+|.-|...|++++|...|.++++  ++..+..| .|+...+..+|..+.  +++......+.+|
T Consensus       330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            667844557888899999999999999999999999661  23344333 245454555554433  8999999999999


Q ss_pred             Hhhhhh
Q psy398          117 TELIEG  122 (162)
Q Consensus       117 ~~l~e~  122 (162)
                      -...+.
T Consensus       409 l~i~~~  414 (433)
T 3qww_A          409 IAIMEV  414 (433)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=82.01  E-value=4.6  Score=33.81  Aligned_cols=94  Identities=6%  Similarity=0.014  Sum_probs=51.0

Q ss_pred             HHHHhhHhHHHhhcC-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           52 GIWQAKLDYLCSIGD-RAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD-~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .+|..+|.-|.+.|+ +++|+++|.+++ .....   -.++..++-.+-... +++......+.+|=.+-    ..+.  
T Consensus       132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~P~---~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~ld----P~~~--  200 (382)
T 2h6f_A          132 TVWHFRRVLLKSLQKDLHEEMNYITAII-EEQPK---NYQVWHHRRVLVEWL-RDPSQELEFIADILNQD----AKNY--  200 (382)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHC----TTCH--
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC----ccCH--
Confidence            456677777777774 888888887776 43222   133445555555555 66666666666665541    1111  


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                        ..-.+.|..+...++|.+|...|-.+
T Consensus       201 --~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          201 --HAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             --HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             --HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence              11123444445555665555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=81.64  E-value=20  Score=29.26  Aligned_cols=99  Identities=9%  Similarity=-0.136  Sum_probs=76.1

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      ++..+|.-+.+.|+.+.|+..|..+. ... -....-++.+.+=++.-.. +++........+|..-.     .+.....
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~-----~~P~~~~  208 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAANL-ALFTEAERRLTEANDSP-----AGEACAR  208 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTST-----TTTTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCC-----CCccccH
Confidence            88999999999999999999999877 443 3333456777777777778 99999999999886321     1122234


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      -.-.+.|+.+...+++.+|..+|=..+
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455799999999999999999986554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=81.45  E-value=3.8  Score=29.14  Aligned_cols=73  Identities=16%  Similarity=0.025  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy398           32 LKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTA  111 (162)
Q Consensus        32 l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~  111 (162)
                      ++.++.-++.+-.  .   ..++..+|..|.+.|+.++|.+.|.++. ....+.. .......+..+.... ++......
T Consensus        94 ~~~~~~al~~~P~--~---~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~-~~~a~~~l~~~~~~~-g~~~~A~~  165 (176)
T 2r5s_A           94 LKRLEQELAANPD--N---FELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQ-DGEVKKTFMDILSAL-GQGNAIAS  165 (176)
T ss_dssp             HHHHHHHHHHSTT--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTT-TTHHHHHHHHHHHHH-CSSCHHHH
T ss_pred             HHHHHHHHHhCCC--C---HHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccC-hHHHHHHHHHHHHHh-CCCCcHHH
Confidence            4555555554434  3   3567789999999999999999999988 5443221 112344455555555 55543333


Q ss_pred             H
Q psy398          112 A  112 (162)
Q Consensus       112 ~  112 (162)
                      .
T Consensus       166 ~  166 (176)
T 2r5s_A          166 K  166 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1

Probab=81.05  E-value=7  Score=26.94  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCCCchHHHHH--HHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398           21 YTEMKDANEKRLKELDLEHE--KNMMDEEDQVSG--IWQAKLDYLCSIGDRAEAFKLADSKF   78 (162)
Q Consensus        21 ~~~~~~~n~~~l~~Le~~lk--~Nlg~~~~eIr~--~~~~~a~~~~~iGD~~~A~~ay~~~~   78 (162)
                      .+.+.++-++-+..|++.|+  +- .  ++-+.+  .+..=|.||.+.||..+|+.|+.=..
T Consensus         4 ~~~L~Eki~kYi~~l~eaL~~i~~-a--~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~   62 (86)
T 2oo2_A            4 EEELRRETLKWLERIEERVKEIEG-D--EGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW   62 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGEEE-C--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-H--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44566777777888888887  22 3  333334  46777999999999999999987655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=80.94  E-value=11  Score=29.37  Aligned_cols=64  Identities=11%  Similarity=0.072  Sum_probs=50.3

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      .++..+|.-|.+.|++++|++.|.+++ ......   ....+.+-.+.+.. +++......+.+|-.+-
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           39 VYYTNRALCYLKMQQPEQALADCRRAL-ELDGQS---VKAHFFLGQCQLEM-ESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence            567899999999999999999999999 543322   24555666666667 99999999999887763

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=80.94  E-value=4.1  Score=25.34  Aligned_cols=65  Identities=12%  Similarity=-0.061  Sum_probs=41.7

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG-CDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~-~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|..|.+.|+.+.|.+.|.++. ..... ....++.+.+.++.+ .- +++....+++.++-..
T Consensus        41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           41 KYWLMKGKALYNLERYEEAVDCYNYVI-NVIED-EYNKDVWAAKADALR-YIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSCC-TTCHHHHHHHHHHHT-TCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcc-cchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhc
Confidence            467789999999999999999999998 54433 111233333333322 22 3566666666665544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=80.75  E-value=3.5  Score=25.15  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=26.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADK   81 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~   81 (162)
                      ..++..+|..|.+.|+.+.|.+.|.++. ..
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~   72 (91)
T 1na3_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-EL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc
Confidence            3567899999999999999999999988 54

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=80.59  E-value=14  Score=30.73  Aligned_cols=26  Identities=8%  Similarity=-0.194  Sum_probs=14.5

Q ss_pred             HHHhhHhHHHh----hcCHHHHHHHHHHhc
Q psy398           53 IWQAKLDYLCS----IGDRAEAFKLADSKF   78 (162)
Q Consensus        53 ~~~~~a~~~~~----iGD~~~A~~ay~~~~   78 (162)
                      ++..+|.+|..    .+|.+.|++.|.++.
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~   70 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAA   70 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence            44455555555    555555666555555

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=80.54  E-value=8.1  Score=32.25  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=68.0

Q ss_pred             HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhhhcCCCc
Q psy398           49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGC-DIQAMTAAIEKATELIEGISGGD  127 (162)
Q Consensus        49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~-d~~~v~~~i~ka~~l~e~~~ggD  127 (162)
                      .-.+++..+|..|.+.|+.++|+++|.+++ ......   .++.+.+-.+-... + |+......+.+|-.+--    .+
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P~~---~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l~P----~~  165 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAI-ELNAAN---YTVWHFRRVLLKSL-QKDLHEEMNYITAIIEEQP----KN  165 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCT----TC
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCccC---HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHCC----CC
Confidence            456788999999999999999999999988 544332   23444544555555 6 58888888888877621    12


Q ss_pred             hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .    ..-...|..+...++|.+|...|-.++
T Consensus       166 ~----~a~~~~g~~~~~~g~~~eAl~~~~kal  193 (382)
T 2h6f_A          166 Y----QVWHHRRVLVEWLRDPSQELEFIADIL  193 (382)
T ss_dssp             H----HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            1    223345666667789988888876654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=80.15  E-value=15  Score=30.58  Aligned_cols=61  Identities=15%  Similarity=-0.180  Sum_probs=41.4

Q ss_pred             HHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q psy398           51 SGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATE  118 (162)
Q Consensus        51 r~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~  118 (162)
                      ..++..+|..|..    .+|.+.|++.|.++. +...     .+..+.+-++...    . +|+........+|-.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~-----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGL-----PQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC-----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCC-----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHH
Confidence            3578889999999    899999999999988 5421     1333333333333    3 578777777777644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=80.04  E-value=9.6  Score=34.01  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=62.6

Q ss_pred             HhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398           62 CSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA  136 (162)
Q Consensus        62 ~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv  136 (162)
                      ...|+.++|+++|.++. +..     .....-.+..+.+-++.+.. +++......+.+|-.+-    ..+|+    ...
T Consensus       402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~----p~~~~----a~~  471 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAERV----GWRWR----LVW  471 (681)
T ss_dssp             TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH----CCCHH----HHH
T ss_pred             ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhccC----cchHH----HHH
Confidence            56789999999999986 211     00011235677777777778 89988888888887763    33554    445


Q ss_pred             HHHHHHhhhhcHHHHHHHhHhhc
Q psy398          137 YEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       137 y~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +.|..++..++|.+|.+.|-.++
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~al  494 (681)
T 2pzi_A          472 YRAVAELLTGDYDSATKHFTEVL  494 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            67888889999999999887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.35
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.76
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.12
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.03
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.67
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.46
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	93.97
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	93.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	93.27
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	91.98
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	90.88
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	88.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	87.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	87.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	87.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	86.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	84.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	84.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	83.21
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	81.61
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	81.58
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	80.55

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00079  Score=46.41  Aligned_cols=101  Identities=15%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+.++|+.|.+.|+++.|+++|++++ +....   ..+..+++-.+.+-. ++|........+|-.+-.. ....|-...
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al-~~~p~---~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~-~~~~~~~~a   79 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAK-ELDPT---NMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRE-NREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH-STTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcc---cHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence            46689999999999999999999999 65433   356788888888888 9999999999999887322 245666666


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +.-.-.|..+...++|.+|.+.|=.++
T Consensus        80 ~~~~~lg~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          80 KAYARIGNSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            666678888999999999999986554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0037  Score=45.71  Aligned_cols=118  Identities=13%  Similarity=-0.030  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHH-hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy398           27 ANEKRLKELDLEHE-KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD  105 (162)
Q Consensus        27 ~n~~~l~~Le~~lk-~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d  105 (162)
                      +.+..+.++++-+. ..+.  +.+--..+..+|..|.+.|+.++|++.|.+++ ......   .++...+-.+-... ++
T Consensus        14 ~~e~al~~~~e~l~~~~~~--~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al-~l~p~~---~~a~~~lg~~~~~~-g~   86 (259)
T d1xnfa_          14 QQEVILARMEQILASRALT--DDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRPDM---PEVFNYLGIYLTQA-GN   86 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh-ccCCCC---HHHHhhhchHHHHH-HH
Confidence            34566667776666 4455  67777889999999999999999999999988 544322   44566666677777 99


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          106 IQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       106 ~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +........+|-.+-.    .+.+    .-...|..+...++|.+|.+.|-.++
T Consensus        87 ~~~A~~~~~~al~~~p----~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          87 FDAAYEAFDSVLELDP----TYNY----AHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHHHHHHHHHHHHCT----TCTH----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHh----hhhh----hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999888631    2322    12334777788899999988886654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.049  Score=39.57  Aligned_cols=109  Identities=13%  Similarity=0.063  Sum_probs=87.0

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCC
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK-SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISG  125 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~-g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~g  125 (162)
                      .......+...+.++...|+.+.|.+.+.+.. +..... ........++.++.+.. +++......+.++-.....  .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~--~  284 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILL-GEFEPAEIVLEELNENARS--L  284 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--T
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhh--c
Confidence            45566678899999999999999999999988 544333 33345566778888888 9999999999999888776  5


Q ss_pred             CchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          126 GDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       126 gDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ++-....+.....|..+...+++.+|-+.|-.++
T Consensus       285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5544566777788999999999999999887654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.013  Score=44.64  Aligned_cols=109  Identities=15%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH---H-HhcCCHHHHHHHHHHHHhhhhh
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIA---Y-FHGCDIQAMTAAIEKATELIEG  122 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~---~-f~~~d~~~v~~~i~ka~~l~e~  122 (162)
                      ..+.-..+..+|..|.+.|+.++|+++|.++. +-....|..-...-...++|   . .. +|+........+|-.+...
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDL-HDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh-HHhhhcccchhHHHHHHHHHHhHhhHH-HHHHHHHHHHHHHHHHHHh
Confidence            56778899999999999999999999999977 54333333333333444444   2 25 8999999999999998765


Q ss_pred             cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                        .+++..-...-.--|-.+...++|.+|.+.|-.++
T Consensus       151 --~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         151 --DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence              55544333333344778888999999999886543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.011  Score=41.24  Aligned_cols=92  Identities=11%  Similarity=-0.076  Sum_probs=52.3

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      +..+|+-|.+-|++++|+++|.+++ .....   -.+..+.+-.+.+.. +++........+|=.+-    ..++    +
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al-~~~p~---~~~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~----p~~~----~   79 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAI-ELNPS---NAIYYGNRSLAYLRT-ECYGYALGDATRAIELD----KKYI----K   79 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHSTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCH----H
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhcc-ccchh---hhhhhhhhHHHHHhc-cccchHHHHHHHHHHHc----ccch----H
Confidence            4556667777777777777777766 43322   233445555555555 66666666666665542    1232    2


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      .-...|..++..++|.+|-+.|..+
T Consensus        80 a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          80 GYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2234566666666666666666544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0082  Score=44.81  Aligned_cols=93  Identities=12%  Similarity=-0.087  Sum_probs=69.8

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      |+.++|.-+++.||++.|.+.|.+++ .....   ..++.+.+..+.+.. +++......+.+|-.+-    ..+.+.  
T Consensus         1 gll~la~~~~~~G~~~~A~~~~~~~l-~~~p~---~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~----p~~~~a--   69 (388)
T d1w3ba_           1 GPMELAHREYQAGDFEAAERHCMQLW-RQEPD---NTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN----PLLAEA--   69 (388)
T ss_dssp             CCCTHHHHHHHHTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHHH--
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHHH--
Confidence            45689999999999999999999988 44322   246777778888888 99999999998886652    123322  


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                        -..-|..+...++|.+|.+.|..+
T Consensus        70 --~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          70 --YSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             --HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --HHHHHHHhhhhccccccccccccc
Confidence              233466778889999998887654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.016  Score=39.90  Aligned_cols=95  Identities=22%  Similarity=0.204  Sum_probs=42.7

Q ss_pred             hhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHH
Q psy398           56 AKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLK  135 (162)
Q Consensus        56 ~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLK  135 (162)
                      ++++-+.+.+|+++|.+.|.+++.-...++...+....++++    . ++...+.+.|.--+.++..  +....+.+ .-
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~----s-~~~~d~~~Ai~~l~~~l~~--~~~~~~~~-~~   75 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----T-RYNDDIRKGIVLLEELLPK--GSKEEQRD-YV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----S-SSHHHHHHHHHHHHHHTTT--SCHHHHHH-HH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----h-cchHHHHHHHHHHHHHHhc--cCCchHHH-HH
Confidence            455555566666666666666552223333333333332222    1 3344444444444444432  11111111 11


Q ss_pred             HHHHHHHhhhhcHHHHHHHhHhh
Q psy398          136 AYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       136 vy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      .+-|+.+...++|.+|-+.|-.+
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Confidence            24555555666666666555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.33  E-value=0.076  Score=36.80  Aligned_cols=109  Identities=14%  Similarity=0.024  Sum_probs=70.7

Q ss_pred             HHHHHHHhh--HhHHHhhcCHHHHHHHHHHhcCCCC------CChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q psy398           49 QVSGIWQAK--LDYLCSIGDRAEAFKLADSKFADKT------NPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATE  118 (162)
Q Consensus        49 eIr~~~~~~--a~~~~~iGD~~~A~~ay~~~~~~~~------~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~  118 (162)
                      +|-+++..+  |.-+.+.|++++|++.|++++ +-.      .+..+.-....+...+|..+.  ++|........+|-.
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al-~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            455565555  788999999999999999987 522      222333333333444444433  899999999999888


Q ss_pred             hhhhcCCCch----hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          119 LIEGISGGDW----SARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       119 l~e~~~ggDW----~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +..+. +..+    ..-.+.-.-.|..+...++|.+|-+.|-.++
T Consensus        84 ~~~~~-~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          84 YFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccc-ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            74320 1112    1112222346888888999999999987765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.06  Score=39.08  Aligned_cols=103  Identities=14%  Similarity=0.017  Sum_probs=78.1

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKT--NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~--~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      .+.-+|.-+...||.+.|++.|.+++ +..  .....++.+...+-.+.+.. +++........+|-.+...  .++...
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL-~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~~~--~~~~~~   89 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ--HDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-hhCcCCCcHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHh--hcchHH
Confidence            34456888899999999999999987 543  33345566777777888888 9999999999999988765  556544


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ....-...|..+...++|..|...+..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al  118 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAF  118 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566677778899999988887654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.028  Score=39.30  Aligned_cols=93  Identities=13%  Similarity=-0.037  Sum_probs=63.7

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      +.+.|+-|.+-|++++|++.|.+++ +.....   ..+..++--+.+.. +++.....+..+|-.+-    +..+.    
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal-~~~p~~---~~~~~~lg~~y~~~-~~~~~Ai~~~~~al~l~----p~~~~----   73 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAI-TRNPLV---AVYYTNRALCYLKM-QQPEQALADCRRALELD----GQSVK----   73 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHCSCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSC----TTCHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHhHHHHHhhh-hhhhhhhHHHHHHHHhC----CCcHH----
Confidence            4578899999999999999999887 443322   23444555555556 88888888888886651    22322    


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      -...-|..++..++|.+|...|-.++
T Consensus        74 a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          74 AHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            23346778888888988888876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.064  Score=37.98  Aligned_cols=102  Identities=18%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CCh---------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPK---------SHRIDAVFTLFRIAYFHGCDIQAMTAAIEK  115 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~---------g~kiD~~l~~iRv~~f~~~d~~~v~~~i~k  115 (162)
                      -+....+.+.|.-|++-||++.|++.|.+++ +..   .+.         ..++.+..++-.+.+-. +++.....++.+
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~-~~~~~A~~~~~~   87 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIV-SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhhhccccchHHHhhhchhHHHHHHHHHHHHHhh-hhcccccchhhh
Confidence            3444556789999999999999999999876 432   221         12233333444445556 888888888877


Q ss_pred             HHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       116 a~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      |=.+-     .+   -.+.-...|..+...++|.+|...|-.++
T Consensus        88 al~~~-----p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          88 ALELD-----SN---NEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhcc-----cc---chhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            76651     22   13344567888888999999998887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.12  E-value=0.096  Score=36.35  Aligned_cols=97  Identities=12%  Similarity=-0.034  Sum_probs=67.4

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH-------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH-------------RIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~-------------kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+...|+-|++-|++++|++.|.+++ ........             .+.+..++-.+-+.. +++.....+..+|=.+
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l-~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-hhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHh-cccchhhhhhhccccc
Confidence            46678999999999999999999988 65532221             223334455555566 8888877777766433


Q ss_pred             hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                           .+++.   +.-.-.|..+...++|.+|-..|-.++
T Consensus        97 -----~p~~~---ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          97 -----DKNNV---KALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             -----STTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -----cchhh---hhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence                 34432   344456788888999999999987665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.025  Score=43.05  Aligned_cols=107  Identities=8%  Similarity=0.051  Sum_probs=75.7

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRI---DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS  124 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~ki---D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~  124 (162)
                      ++-.+.+...|+.|..-|++++|+++|.++. +-....+..-   +....+-++.... +++....++..+|-.+...  
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~-~~~~~~~~~~~~a~~~~~~g~~y~~~-~~~~~A~~~~~~a~~~~~~--  109 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTH--  109 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHhhHHhhh--
Confidence            4446678889999999999999999999998 6544444444   4445555555556 8999999999999888766  


Q ss_pred             CCchhhhhHHHHHHH-HHHhhhhcHHHHHHHhHhh
Q psy398          125 GGDWSARNKLKAYEG-VYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       125 ggDW~rrnrLKvy~g-l~~l~~R~fk~AA~lfld~  158 (162)
                      -|++..-...-..-| ++....++|.+|.+.|-.+
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_         110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            666665444433333 3334468888888877544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.092  Score=34.78  Aligned_cols=93  Identities=10%  Similarity=-0.063  Sum_probs=69.2

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      +.++|+-+.+-|++++|+..|.+++ .......   .+...+--+-+.. +++........+|-.+-    ..++.    
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al-~~~p~~~---~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~----p~~~~----   72 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAI-KLDPHNH---VLYSNRSAAYAKK-GDYQKAYEDGCKTVDLK----PDWGK----   72 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCH---HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC----TTCHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-hcCCcch---hhhhccccccccc-ccccccchhhhhHHHhc----cchhh----
Confidence            5679999999999999999999998 6554432   3444444455567 89999888888888762    22332    


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .-...|..++..++|.+|-..|-.++
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34567888888999999998887765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.076  Score=39.56  Aligned_cols=93  Identities=14%  Similarity=-0.032  Sum_probs=70.2

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      ...+|..+.+.|++++|+++|.+++ ......   .+..+.+..+.+.. +++........+|-.+-.    .+.    .
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p----~~~----~   88 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAV-QQDPKH---MEAWQYLGTTQAEN-EQELLAISALRRCLELKP----DNQ----T   88 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH----H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CChHHHHHHHHhhhcccc----ccc----c
Confidence            4578999999999999999999998 443322   46677777888888 999999999999877621    222    2


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      .....|..+...+++.+|.+.|-.++
T Consensus        89 ~~~~la~~~~~~~~~~~A~~~~~~~~  114 (323)
T d1fcha_          89 ALMALAVSFTNESLQRQACEILRDWL  114 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHH
Confidence            33445677788899999988876543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.60  E-value=0.077  Score=37.31  Aligned_cols=99  Identities=16%  Similarity=0.020  Sum_probs=65.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC---CCChHHH----H-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADK---TNPKSHR----I-----DAVFTLFRIAYFHGCDIQAMTAAIEKATE  118 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~---~~s~g~k----i-----D~~l~~iRv~~f~~~d~~~v~~~i~ka~~  118 (162)
                      -..+.++|.-+.+.|+++.|++.|.+++ ..   +......    .     .+..++--+.+.. +++..+..+.++|-.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l-~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh-hhcccchhhhhhhhh
Confidence            3446689999999999999999998866 42   2222211    1     1222233334445 888888888888877


Q ss_pred             hhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          119 LIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       119 l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      +-    ...+    +--...|..+...++|.+|-+.|-.++
T Consensus        93 l~----p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          93 LD----SANE----KGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HC----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cc----cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            62    2222    333456777888889999988887655

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.13  Score=37.86  Aligned_cols=94  Identities=10%  Similarity=-0.087  Sum_probs=52.6

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN  132 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn  132 (162)
                      .+..+|..|.+.|+.+.|++.|.++. +.....   .++.+.+..+-... +++....+.+.++......    +.    
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~----~~----  305 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHF---PDAYCNLANALKEK-GSVAEAEDCYNTALRLCPT----HA----  305 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSC---HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHCTT----CH----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHhhhccCCc----cc----
Confidence            45567777777788888888887776 433221   34555555566666 6777666666665554211    11    


Q ss_pred             HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          133 KLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       133 rLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      ......|..+...++|.+|.+.|-.++
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence            112233344445566666666554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.45  E-value=0.12  Score=34.03  Aligned_cols=91  Identities=13%  Similarity=-0.110  Sum_probs=68.0

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK  133 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr  133 (162)
                      +..+|.-+.+.|+++.|..+|+++. ......   .+..+.+-.+.... +++.....++.+|=.+-     .+   ...
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~-----p~---~~~   85 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVC-QKEPER---EEAWRSLGLTQAEN-EKDGLAIIALNHARMLD-----PK---DIA   85 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-----TT---CHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhc-cccccc---chhhhhhhhhhhhh-hhHHHhhcccccccccc-----cc---ccc
Confidence            4578999999999999999999988 544321   45666666666666 99999999999887762     12   122


Q ss_pred             HHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          134 LKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       134 LKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                      .-.--|+.++.+|++.+|-+.|=.
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHH
Confidence            335678888999999999887743

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.13  Score=38.26  Aligned_cols=96  Identities=15%  Similarity=0.069  Sum_probs=72.6

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR  131 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr  131 (162)
                      .++..+|..+...|+.+.|++.|.++. .....   -.++.+.+-.+-+.. +++........+|-.+ +   ..+++  
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~-~---p~~~~--  241 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAAL-SVRPN---DYLLWNKLGATLANG-NQSEEAVAAYRRALEL-Q---PGYIR--  241 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH-C---TTCHH--
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccc-ccccc---cccchhhhhhccccc-ccchhHHHHHHHHHHH-h---hccHH--
Confidence            456789999999999999999999987 44322   235566666666777 9999998888888765 2   23433  


Q ss_pred             hHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          132 NKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       132 nrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                        .-..-|..+...++|.+|-+.|-.+++
T Consensus       242 --a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         242 --SRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             --HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              233468888999999999999987764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.02  E-value=0.13  Score=35.88  Aligned_cols=97  Identities=10%  Similarity=-0.009  Sum_probs=62.7

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC-------------hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNP-------------KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s-------------~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      -....|..|...|++++|++.|.+++ .....             ....+.+.+++-.+-+.. +++.....+..+|-.+
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-HhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhh-cccchhhhhhhhhhhh
Confidence            34567888889999999999998876 32111             112223334444455556 7888777777776554


Q ss_pred             hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                           .++   -.+.-...|..++..++|.+|...|-.++
T Consensus       107 -----~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1         107 -----DPS---NTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             -----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----hhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence                 122   12344567777888899999988887664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.26  Score=35.33  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=72.1

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC--chh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG--DWS  129 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg--DW~  129 (162)
                      .++..+|.-|...|+++.|+++|.+++ +....   -.+..+++-.+-+.. +++....+...+|-.....  ..  ++.
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl-~ldp~---~~~a~~~~g~~~~~~-g~~~~A~~~~~kAl~~~~~--n~~~~~~  109 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSI-NRDKH---LAVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRG--NQLIDYK  109 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTT--CSEEECG
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHH-HHhhh---hhhhHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcc--CchHHHH
Confidence            468899999999999999999999988 53322   134555555555667 9999999999999765432  11  111


Q ss_pred             hh--------hHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398          130 AR--------NKLKAYEGVYCLAIRQYCRAAELFVDVIR  160 (162)
Q Consensus       130 rr--------nrLKvy~gl~~l~~R~fk~AA~lfld~~~  160 (162)
                      ..        ...-.-.|+.+...++|.+|.+.|-.++.
T Consensus       110 ~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_         110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            10        11112468888899999999999877653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.55  Score=31.94  Aligned_cols=92  Identities=12%  Similarity=-0.023  Sum_probs=65.8

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA  130 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r  130 (162)
                      ..+|..+|.-|.+.|+.+.|..+|.+++ +.....   ....+.+..+.+.. +++......+.+|-.+-    ..+++.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal-~~~p~~---~~a~~~~g~~~~~~-g~~~eA~~~~~~a~~~~----p~~~~~  114 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKY---IKGYYRRAASNMAL-GKFRAALRDYETVVKVK----PHDKDA  114 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----TTCHHH
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHH-HHcccc---hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC----CCCHHH
Confidence            4578899999999999999999999998 544332   24567777778888 99999999999998873    235543


Q ss_pred             hhHHHHHHHHHHhhhhcHHHHHH
Q psy398          131 RNKLKAYEGVYCLAIRQYCRAAE  153 (162)
Q Consensus       131 rnrLKvy~gl~~l~~R~fk~AA~  153 (162)
                      ...  ...+...+..+.|.+|..
T Consensus       115 ~~~--l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         115 KMK--YQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHh
Confidence            332  233344455566666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.47  Score=33.88  Aligned_cols=89  Identities=9%  Similarity=-0.013  Sum_probs=66.4

Q ss_pred             HhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHH
Q psy398           55 QAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKL  134 (162)
Q Consensus        55 ~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrL  134 (162)
                      .+.|..+...||++.|++.|+++. +..    .  .+++++=.+-+-. +++....+...+|-++-.    ..    ...
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i~-~~~----~--~~~~nlG~~~~~~-g~~~~A~~~~~kAl~ldp----~~----~~a   72 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAVQ-DPH----S--RICFNIGCMYTIL-KNMTEAEKAFTRSINRDK----HL----AVA   72 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS-SCC----H--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC----HHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcC-CCC----H--HHHHHHHHHHHHc-CCchhHHHHHHHHHHHhh----hh----hhh
Confidence            367999999999999999999866 432    1  3677777777777 999999999999977621    12    122


Q ss_pred             HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398          135 KAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus       135 Kvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      -.-.|+.+...++|.+|.+-|-.++
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH
Confidence            2346888888999999988776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.27  E-value=0.31  Score=33.49  Aligned_cols=63  Identities=11%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+|..+|.-|.+.|++++|+++|.+++ +.....   .+..+.+-.+.+.. +++......+.+|-.+
T Consensus        39 ~~~~~lg~~y~~~~~~~~Ai~~~~~al-~l~p~~---~~a~~~lg~~~~~l-~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          39 VYYTNRALCYLKMQQPEQALADCRRAL-ELDGQS---VKAHFFLGQCQLEM-ESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhhhhhhhhhhHHHHHHH-HhCCCc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh
Confidence            578899999999999999999999999 543322   34567777777778 9999999999998776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.86  Score=28.77  Aligned_cols=64  Identities=11%  Similarity=-0.007  Sum_probs=50.8

Q ss_pred             HHhhHhHHHhhcCHHHHHHHHHHhcCCC----CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           54 WQAKLDYLCSIGDRAEAFKLADSKFADK----TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~----~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ...+|.-+++.||+++|.+.|.+++ ..    ..+.-.+.++..++-.+.... +++.....+..+|=.+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al-~~~~~~~~~~~~~~~~l~~Lg~~~~~~-g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-HHHhhhhccCccHHHHHHHHhhHHHhc-CChHHHHHHHHHHHHh
Confidence            5689999999999999999999876 32    222334677888887777777 9999999998888766

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=1.2  Score=29.65  Aligned_cols=65  Identities=15%  Similarity=0.025  Sum_probs=52.1

Q ss_pred             HHHHhhHhHHHh---hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCS---IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~---iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|..+.+   .||.++|++.|.+++ ... +...+.|.++.+-.+.+-. +|+....+++.+|=.+
T Consensus        34 ~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-~~~-~~~~~~~~~~~Lg~~y~~~-g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          34 STQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKG-SKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTS-CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hcc-CCchHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHh
Confidence            356689998876   556678999999999 544 3455678888888888888 9999999999999886

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=1.3  Score=27.77  Aligned_cols=68  Identities=15%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398           90 DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI  159 (162)
Q Consensus        90 D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~  159 (162)
                      |-||.+=++.+.. +|+.......++|-.+... .+..|..+...--+-|..+...|+|.+|-..|-.++
T Consensus         6 ddc~~lG~~~~~~-g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           6 EDSFELGKVAYTE-ADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            5688888899999 9999999999999887653 122333333333367889999999999999887654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.41  E-value=1.5  Score=32.71  Aligned_cols=67  Identities=10%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTN-PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI  120 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~-s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~  120 (162)
                      ..+...++|+.+.||.++|...|.+++ ..+. ++...-.+....++.--.+ ||...+.+-..++..+.
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai-~~~~~~~~~~~~iw~~~~~fE~~~-G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH-HSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence            345677888888888888888888887 6664 3333344556667777777 88888888777777665

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.32  E-value=2.2  Score=28.83  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .+..+|.-|.+.|+.+.|++.|.+++ +...+.   ....+.+.++-... +++......+.+|-.+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al-~~~p~~---~ka~~~~g~~~~~l-g~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVL-KIDKNN---VKALYKLGVANMYF-GFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccc-cccchh---hhhhHHhHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            46678889999999999999999998 544332   34677888888888 9999999999999987

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.79  E-value=0.76  Score=29.76  Aligned_cols=60  Identities=10%  Similarity=-0.066  Sum_probs=42.0

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEK  115 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~k  115 (162)
                      -.++..+|.-|.+.|+.+.|+.+|.+++ ......   .+..+.+-.+-... +|+....+++++
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~la~~y~~~-g~~~~A~~~l~~  109 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKD---IAVHAALAVSHTNE-HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccc-cccccc---ccchHHHHHHHHHC-CCHHHHHHHHHH
Confidence            3678899999999999999999999988 543331   24444444444445 566666666655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=1.4  Score=28.49  Aligned_cols=63  Identities=10%  Similarity=0.033  Sum_probs=51.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-|...|+.+.|++.|.++. .......   ...+.+-++-... +++......+.+|-.+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~---~~~~~~g~~~~~~-~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          38 VLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKPDWG---KGYSRKAAALEFL-NRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTCH---HHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred             hhhhcccccccccccccccchhhhhHH-Hhccchh---hHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence            478899999999999999999999988 5433322   3567777777788 9999999999998876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.16  E-value=3.6  Score=28.96  Aligned_cols=102  Identities=10%  Similarity=-0.137  Sum_probs=72.4

Q ss_pred             hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh-------------------HHHHHHHHHHHHHHHHhcCCHH
Q psy398           47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK-------------------SHRIDAVFTLFRIAYFHGCDIQ  107 (162)
Q Consensus        47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~-------------------g~kiD~~l~~iRv~~f~~~d~~  107 (162)
                      |...=.++...|......||.+.|..+|.+++ +-..+.                   ...++++..+..+.+.. +++.
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL-~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~-g~~~   84 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAAL-REWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC-GRAS   84 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCch
Confidence            44555678899999999999999999999988 643221                   34668888889999888 9999


Q ss_pred             HHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398          108 AMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDV  158 (162)
Q Consensus       108 ~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~  158 (162)
                      .+.....++-.+-     ...+   ..-..-+..+...|++.+|.+.|-.+
T Consensus        85 ~Al~~~~~al~~~-----P~~e---~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          85 AVIAELEALTFEH-----PYRE---PLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-----CccH---HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9888888876652     2211   22233344555667777777666543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=86.32  E-value=4.2  Score=28.90  Aligned_cols=60  Identities=15%  Similarity=0.036  Sum_probs=41.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATE  118 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~  118 (162)
                      .++.++|.++.+-||+++|++.|.++. +...     .+.++.+=.+.+.    - .|......+..++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g~-----~~A~~~Lg~~y~~G~~~~-~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKAC-DLKE-----NSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC-----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCC-----HHHHHHHHHHHHcCCCcc-hhHHHHHHhhccccc
Confidence            367899999999999999999999998 5422     2344443333222    2 477777777776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=84.66  E-value=4.7  Score=28.03  Aligned_cols=63  Identities=13%  Similarity=0.019  Sum_probs=47.4

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-|.+.|+.+.|+++|.++. ......   .+..+.+-.+-+.. +++....+.+.++-..
T Consensus        72 ~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          72 EVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTY---NYAHLNRGIALYYG-GRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHhhhchHHHHHHHHHHhhhhhhHHH-HHHhhh---hhhHHHHHHHHHHH-hhHHHHHHHHHHHHhh
Confidence            467889999999999999999999988 543322   23455555555666 8898888888887554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.66  E-value=4.2  Score=27.45  Aligned_cols=67  Identities=10%  Similarity=-0.047  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398           48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL  119 (162)
Q Consensus        48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l  119 (162)
                      ......+..+|.-|.+.|+.+.|+..|.+++ ......   ....+.+-++-+.. +++......+.+|-.+
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al-~~~p~~---~~a~~~~g~~~~~l-~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEAL-EIDPSN---TKALYRRAQGWQGL-KEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhh-hhhhhh---hhHHHhHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence            3445567889999999999999999999999 544322   34566666666777 9999999999999887

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=3.3  Score=26.99  Aligned_cols=67  Identities=9%  Similarity=-0.023  Sum_probs=46.2

Q ss_pred             HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Q psy398           52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATEL  119 (162)
Q Consensus        52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l  119 (162)
                      .++..+|.-|.+.|+++.|++.|.++. +.. ........+.-..+|+|..+.  +++.....+..++-.+
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          39 TYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHcCchHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            478899999999999999999999987 422 222223344444555554432  7888887777777543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.61  E-value=5.5  Score=26.55  Aligned_cols=79  Identities=18%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC------CCCh--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398           50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADK------TNPK--SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE  121 (162)
Q Consensus        50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~------~~s~--g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e  121 (162)
                      ...++..+|.-|...|+++.|++.|.+++ ..      ....  .....+.+++-.+-... +++.....+..+|-.+..
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l-g~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhh-hcccccccccccccchhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhhH
Confidence            34678889999999999999999999876 32      1111  12233445555555666 999999999999999865


Q ss_pred             hcCCCchhhh
Q psy398          122 GISGGDWSAR  131 (162)
Q Consensus       122 ~~~ggDW~rr  131 (162)
                      + .++++..+
T Consensus       132 ~-~~~~~~~~  140 (156)
T d2hr2a1         132 E-RKGETPGK  140 (156)
T ss_dssp             H-CCSCCTTH
T ss_pred             H-hhchHHHH
Confidence            4 13454433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=81.58  E-value=8.6  Score=28.73  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHH
Q psy398           29 EKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQA  108 (162)
Q Consensus        29 ~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~  108 (162)
                      ++-++.++..++.|-.  +.+   ++..+|..||..|+.++|.+.|.++. ..........-..-.++|..    +....
T Consensus        13 ~eAl~~l~~al~~~P~--d~~---ar~~La~lL~~~G~~e~A~~~l~~a~-~l~P~~~~~~~~l~~ll~a~----~~~~~   82 (264)
T d1zbpa1          13 QQALELLIEAIKASPK--DAS---LRSSFIELLCIDGDFERADEQLMQSI-KLFPEYLPGASQLRHLVKAA----QARKD   82 (264)
T ss_dssp             HHHHHHHHHHHHTCTT--CHH---HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHHHCCC--CHH---HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhc----cccHH
Confidence            4456667777776666  544   45589999999999999999999988 54433222221222222211    11111


Q ss_pred             HHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398          109 MTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVD  157 (162)
Q Consensus       109 v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld  157 (162)
                      +....  ....+.. ...+|.    .....+..++..+++.+|.+++-.
T Consensus        83 a~~~~--~~~~~~~-~p~~~~----~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          83 FAQGA--ATAKVLG-ENEELT----KSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             HTTSC--CCEECCC-SCHHHH----HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHh--hhhhccc-CchHHH----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            10000  0001110 011232    344678888899999999988754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=11  Score=30.01  Aligned_cols=94  Identities=9%  Similarity=-0.065  Sum_probs=46.5

Q ss_pred             HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCch
Q psy398           51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGDW  128 (162)
Q Consensus        51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggDW  128 (162)
                      ..++..+|.-+.+.|+.+.|.+.|.++.         +++.--+.+++|..+.  +++.....+..+|-.+-  |+.|+ 
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al---------~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~-  187 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSC---------SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQ-  187 (497)
T ss_dssp             -----------------------CCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSH-
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchH-
Confidence            3445555666666666666666555544         2233334444444332  89999999999998873  22332 


Q ss_pred             hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhccC
Q psy398          129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS  161 (162)
Q Consensus       129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~T  161 (162)
                           .----|+-+...+++.+|...|..++.+
T Consensus       188 -----~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         188 -----PYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             -----HHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                 3344577777899999999999888764