Psyllid ID: psy39

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MSKAGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEAKEAKMLRTSG
cccccccHHHHHHHHHccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEEccccEEEEEccccHHHHHHHHHcccccccccccccEEEEEHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccc
cHHHHHHHHHHHHHHHcEEEEEEEEEccccccccccccHHHcccccHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccHHHHHHHHHHccccccccccccEEcEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MSKAGKVFSKNVKKAVDNFRMIrtnipaglaspgpplgptlgergvnIATFCKDFNEKtkdlkeglplptrikvnpdrsykliihkpptsyyLKQAAGMakgvmkpgkeiggklTLKHIYEIAKiksedsafecETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEAKEAKMLRTSG
mskagkvfsknvKKAVDNFRMIRTnipaglaspgppLGPTLGERGVNIATFCKDFnektkdlkeglplptrikvnpdrsyKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKiksedsafECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELeeakeakmlrtsg
MSKAGKVFSKNVKKAVDNFRMIRTNIpaglaspgpplgptlgERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVaeqkkeleeakeakMLRTSG
**************AVDNFRMIRTNIPA***********TLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIV********************
***************VDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAA*************GGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEE******************KMLR***
MSKAGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELE************
*SKAGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEAKE********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKAGKVFSKNVKKAVDNFRMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYxxxxxxxxxxxxxxxxxxxxxxxxKMLRTSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
Q9VFJ2196 39S ribosomal protein L11 yes N/A 0.979 0.974 0.558 7e-59
Q9Y3B7192 39S ribosomal protein L11 yes N/A 0.948 0.963 0.518 3e-48
Q2YDI0192 39S ribosomal protein L11 yes N/A 0.815 0.828 0.552 4e-47
Q5XIE3203 39S ribosomal protein L11 yes N/A 0.856 0.822 0.514 9e-47
Q9CQF0192 39S ribosomal protein L11 yes N/A 0.815 0.828 0.546 5e-46
P34264195 Probable 39S ribosomal pr yes N/A 0.964 0.964 0.518 2e-45
Q9UTK2144 54S ribosomal protein L19 yes N/A 0.697 0.944 0.448 6e-31
Q160X3141 50S ribosomal protein L11 yes N/A 0.676 0.936 0.447 3e-29
Q492B5143 50S ribosomal protein L11 yes N/A 0.687 0.937 0.485 5e-29
Q2RQU9142 50S ribosomal protein L11 yes N/A 0.687 0.943 0.441 7e-29
>sp|Q9VFJ2|RM11_DROME 39S ribosomal protein L11, mitochondrial OS=Drosophila melanogaster GN=mRpL11 PE=1 SV=1 Back     alignment and function desciption
 Score =  226 bits (576), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 147/197 (74%), Gaps = 6/197 (3%)

Query: 1   MSKA-GKVFSKNVKKAVDNFRM---IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFN 56
           MSKA GK+  K++KK V+       ++TNIPAG+A+ GPPLGP LG+R +NIA FCKDFN
Sbjct: 1   MSKAAGKL--KSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFN 58

Query: 57  EKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTL 116
            KT ++KEG+PLP RI VN DRSY L IH PP +++LKQAAG+ +G M PGKE+ G +TL
Sbjct: 59  AKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITL 118

Query: 117 KHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVA 176
           KH+YEIA IK +D      T++ +C  +I  AR+ GI+VV ++D   Y +FLEERK+IV 
Sbjct: 119 KHLYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKVVREIDPAAYGEFLEERKLIVE 178

Query: 177 EQKKELEEAKEAKMLRT 193
           +Q++EL+E +EAKMLRT
Sbjct: 179 QQRRELQEKREAKMLRT 195

Drosophila melanogaster (taxid: 7227)
>sp|Q9Y3B7|RM11_HUMAN 39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1 Back     alignment and function description
>sp|Q2YDI0|RM11_BOVIN 39S ribosomal protein L11, mitochondrial OS=Bos taurus GN=MRPL11 PE=1 SV=2 Back     alignment and function description
>sp|Q5XIE3|RM11_RAT 39S ribosomal protein L11, mitochondrial OS=Rattus norvegicus GN=Mrpl11 PE=2 SV=1 Back     alignment and function description
>sp|Q9CQF0|RM11_MOUSE 39S ribosomal protein L11, mitochondrial OS=Mus musculus GN=Mrpl11 PE=2 SV=1 Back     alignment and function description
>sp|P34264|RM11_CAEEL Probable 39S ribosomal protein L11, mitochondrial OS=Caenorhabditis elegans GN=B0303.15 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTK2|RM19_SCHPO 54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1 Back     alignment and function description
>sp|Q160X3|RL11_ROSDO 50S ribosomal protein L11 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplK PE=3 SV=1 Back     alignment and function description
>sp|Q492B5|RL11_BLOPB 50S ribosomal protein L11 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplK PE=3 SV=1 Back     alignment and function description
>sp|Q2RQU9|RL11_RHORT 50S ribosomal protein L11 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
91086019195 PREDICTED: similar to 39S ribosomal prot 0.943 0.943 0.650 2e-65
310769813196 mitochondrial ribosomal protein L11 [Ant 0.948 0.943 0.621 5e-65
357628395196 hypothetical protein KGM_09163 [Danaus p 0.876 0.872 0.660 5e-64
332376503195 unknown [Dendroctonus ponderosae] 0.943 0.943 0.643 1e-63
156541558195 PREDICTED: 39S ribosomal protein L11, mi 0.948 0.948 0.629 1e-62
62083501196 mitochondrial ribosomal protein L11 [Lys 0.989 0.984 0.584 1e-61
157108939196 50S robosomal protein L11 [Aedes aegypti 0.979 0.974 0.589 2e-61
312371663196 hypothetical protein AND_21804 [Anophele 0.984 0.979 0.571 4e-61
195055839196 GH13965 [Drosophila grimshawi] gi|193892 0.979 0.974 0.573 1e-60
195110857196 GI24842 [Drosophila mojavensis] gi|19391 0.979 0.974 0.578 3e-60
>gi|91086019|ref|XP_972971.1| PREDICTED: similar to 39S ribosomal protein L11, mitochondrial [Tribolium castaneum] gi|270010187|gb|EFA06635.1| hypothetical protein TcasGA2_TC009555 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 149/186 (80%), Gaps = 2/186 (1%)

Query: 10  KNVKKAVDNFRM--IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLP 67
           K +KK V+  +   +RTNIPAG+A+ GPPLGP LG+RG+NIA FCKDFNEKTKD+KEG+P
Sbjct: 9   KTLKKVVEKVKHGNLRTNIPAGMAAAGPPLGPMLGQRGINIAAFCKDFNEKTKDIKEGIP 68

Query: 68  LPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKS 127
           LPTR+ VNPDRSY+L+I+KPP  ++LKQAAG+ +  M+PGKEI GK+TLKH+YEIAK+KS
Sbjct: 69  LPTRVTVNPDRSYELVINKPPVVFFLKQAAGIQRAAMEPGKEIAGKVTLKHVYEIAKLKS 128

Query: 128 EDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEAKE 187
            D   E  +L+ +C  V G ARS GIEVV  LD EEY +FL ERK IV +QKKEL+E KE
Sbjct: 129 VDPTLETRSLDDLCQMVCGIARSCGIEVVRDLDPEEYGKFLAERKEIVEQQKKELQEKKE 188

Query: 188 AKMLRT 193
           AKMLRT
Sbjct: 189 AKMLRT 194

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|310769813|gb|ADP21464.1| mitochondrial ribosomal protein L11 [Antheraea yamamai] Back     alignment and taxonomy information
>gi|357628395|gb|EHJ77739.1| hypothetical protein KGM_09163 [Danaus plexippus] Back     alignment and taxonomy information
>gi|332376503|gb|AEE63391.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|156541558|ref|XP_001599813.1| PREDICTED: 39S ribosomal protein L11, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|62083501|gb|AAX62475.1| mitochondrial ribosomal protein L11 [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|157108939|ref|XP_001650452.1| 50S robosomal protein L11 [Aedes aegypti] gi|108879173|gb|EAT43398.1| AAEL005162-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|312371663|gb|EFR19791.1| hypothetical protein AND_21804 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|195055839|ref|XP_001994820.1| GH13965 [Drosophila grimshawi] gi|193892583|gb|EDV91449.1| GH13965 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195110857|ref|XP_001999996.1| GI24842 [Drosophila mojavensis] gi|193916590|gb|EDW15457.1| GI24842 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
FB|FBgn0038234196 mRpL11 "mitochondrial ribosoma 0.979 0.974 0.461 5.3e-40
ZFIN|ZDB-GENE-040718-294196 mrpl11 "mitochondrial ribosoma 0.887 0.882 0.474 5.5e-38
UNIPROTKB|Q9Y3B7192 MRPL11 "39S ribosomal protein 0.682 0.692 0.533 1.1e-34
UNIPROTKB|Q2YDI0192 MRPL11 "39S ribosomal protein 0.682 0.692 0.525 1.7e-34
UNIPROTKB|F1RU54192 MRPL11 "Uncharacterized protei 0.682 0.692 0.525 2.2e-34
UNIPROTKB|E2RBT1192 MRPL11 "Uncharacterized protei 0.661 0.671 0.541 2.8e-34
MGI|MGI:2137215192 Mrpl11 "mitochondrial ribosoma 0.682 0.692 0.525 3.6e-34
RGD|1359665203 mrpl11 "mitochondrial ribosoma 0.887 0.852 0.440 4.6e-34
UNIPROTKB|Q5XIE3203 Mrpl11 "39S ribosomal protein 0.887 0.852 0.440 4.6e-34
WB|WBGene00015133195 mrpl-11 [Caenorhabditis elegan 0.964 0.964 0.435 6.7e-33
FB|FBgn0038234 mRpL11 "mitochondrial ribosomal protein L11" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/197 (46%), Positives = 121/197 (61%)

Query:     1 MSKA-GKVFSKNVKKAVDNFR---MIRTNIXXXXXXXXXXXXXXXXERGVNIATFCKDFN 56
             MSKA GK+  K++KK V+       ++TNI                +R +NIA FCKDFN
Sbjct:     1 MSKAAGKL--KSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFN 58

Query:    57 EKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTL 116
              KT ++KEG+PLP RI VN DRSY L IH PP +++LKQAAG+ +G M PGKE+ G +TL
Sbjct:    59 AKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITL 118

Query:   117 KHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVX 176
             KH+YEIA IK +D      T++ +C  +I  AR+ GI+VV ++D   Y +FLEERK+IV 
Sbjct:   119 KHLYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKVVREIDPAAYGEFLEERKLIVE 178

Query:   177 XXXXXXXXXXXXXMLRT 193
                          MLRT
Sbjct:   179 QQRRELQEKREAKMLRT 195
GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS
ZFIN|ZDB-GENE-040718-294 mrpl11 "mitochondrial ribosomal protein L11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3B7 MRPL11 "39S ribosomal protein L11, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2YDI0 MRPL11 "39S ribosomal protein L11, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RU54 MRPL11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBT1 MRPL11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2137215 Mrpl11 "mitochondrial ribosomal protein L11" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359665 mrpl11 "mitochondrial ribosomal protein L11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XIE3 Mrpl11 "39S ribosomal protein L11, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00015133 mrpl-11 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q1QN48RL11_NITHXNo assigned EC number0.41170.68710.9436yesN/A
Q9VFJ2RM11_DROMENo assigned EC number0.55830.97940.9744yesN/A
B2UUW4RL11_HELPSNo assigned EC number0.48520.68200.9432yesN/A
A7HWQ0RL11_PARL1No assigned EC number0.41170.68710.9436yesN/A
P29395RL11_THEMANo assigned EC number0.49260.68200.9432yesN/A
A5U9X6RL11_HAEIENo assigned EC number0.43280.67690.9295yesN/A
P62441RL11_RHOPANo assigned EC number0.43280.67690.9295yesN/A
Q160X3RL11_ROSDONo assigned EC number0.44770.67690.9361yesN/A
B1L939RL11_THESQNo assigned EC number0.49260.68200.9432yesN/A
Q9Y3B7RM11_HUMANNo assigned EC number0.51850.94870.9635yesN/A
P44351RL11_HAEINNo assigned EC number0.43280.67690.9295yesN/A
Q1GT67RL11_SPHALNo assigned EC number0.44850.68710.9370yesN/A
B6JN41RL11_HELP2No assigned EC number0.48520.68200.9432yesN/A
Q11HA9RL11_MESSBNo assigned EC number0.42220.68200.9366yesN/A
A8F4F6RL11_THELTNo assigned EC number0.47790.68200.9432yesN/A
B5Z8J9RL11_HELPGNo assigned EC number0.48520.68200.9432yesN/A
Q1GK54RL11_RUESTNo assigned EC number0.44770.67690.9361yesN/A
Q6FF94RL11_ACIADNo assigned EC number0.45770.70760.9718yesN/A
Q07KJ7RL11_RHOP5No assigned EC number0.41040.67690.9295yesN/A
Q89B16RL11_BUCBPNo assigned EC number0.42640.68710.9178yesN/A
Q5LMP9RL11_RUEPONo assigned EC number0.44770.67690.9361yesN/A
B9KBJ9RL11_THENNNo assigned EC number0.50.68200.9432yesN/A
A5ELP2RL11_BRASBNo assigned EC number0.42960.68200.9366yesN/A
Q3SSY4RL11_NITWNNo assigned EC number0.41910.68710.9436yesN/A
Q9UTK2RM19_SCHPONo assigned EC number0.44850.69740.9444yesN/A
Q9CQF0RM11_MOUSENo assigned EC number0.54650.81530.8281yesN/A
Q0BYA0RL11_HYPNANo assigned EC number0.41540.68710.9054yesN/A
A8LLJ9RL11_DINSHNo assigned EC number0.44020.67690.9361yesN/A
B3QC05RL11_RHOPTNo assigned EC number0.43280.67690.9295yesN/A
Q492B5RL11_BLOPBNo assigned EC number0.48520.68710.9370yesN/A
Q1CS64RL11_HELPHNo assigned EC number0.48520.68200.9432yesN/A
P66053RL11_HELPJNo assigned EC number0.48520.68200.9432yesN/A
P66052RL11_HELPYNo assigned EC number0.48520.68200.9432yesN/A
P34264RM11_CAEELNo assigned EC number0.51810.96410.9641yesN/A
Q0ANN9RL11_MARMMNo assigned EC number0.42640.68710.9436yesN/A
Q211C4RL11_RHOPBNo assigned EC number0.41790.67690.9295yesN/A
Q0I0V2RL11_HAES1No assigned EC number0.44020.67690.9295yesN/A
Q2RQU9RL11_RHORTNo assigned EC number0.44110.68710.9436yesN/A
A6Q1L9RL11_NITSBNo assigned EC number0.46890.71280.9858yesN/A
B6JER5RL11_OLICONo assigned EC number0.43280.67690.9295yesN/A
B0UUZ4RL11_HAES2No assigned EC number0.44020.67690.9295yesN/A
Q65W46RL11_MANSMNo assigned EC number0.44020.67690.9295yesN/A
Q89J69RL11_BRAJANo assigned EC number0.43700.68200.9366yesN/A
B4R8K1RL11_PHEZHNo assigned EC number0.44110.68710.9370yesN/A
Q2YDI0RM11_BOVINNo assigned EC number0.55270.81530.8281yesN/A
Q5XIE3RM11_RATNo assigned EC number0.51470.85640.8226yesN/A
A5IJW7RL11_THEP1No assigned EC number0.47790.68200.9432yesN/A
Q17VN2RL11_HELAHNo assigned EC number0.47790.68200.9432yesN/A
Q7VRP3RL11_BLOFLNo assigned EC number0.45940.73840.9863yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
cd00349131 cd00349, Ribosomal_L11, Ribosomal protein L11 2e-55
smart00649132 smart00649, RL11, Ribosomal protein L11/L12 2e-53
TIGR01632140 TIGR01632, L11_bact, 50S ribosomal protein L11 8e-48
PRK00140141 PRK00140, rplK, 50S ribosomal protein L11; Validat 6e-45
COG0080141 COG0080, RplK, Ribosomal protein L11 [Translation, 6e-45
CHL00127140 CHL00127, rpl11, ribosomal protein L11; Validated 1e-31
PRK01143163 PRK01143, rpl11p, 50S ribosomal protein L11P; Vali 5e-25
pfam0029869 pfam00298, Ribosomal_L11, Ribosomal protein L11, R 7e-23
pfam0394659 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, 2e-22
PTZ00321342 PTZ00321, PTZ00321, ribosomal protein L11; Provisi 4e-16
PRK14539196 PRK14539, PRK14539, 50S ribosomal protein L11/unkn 6e-15
PLN03072166 PLN03072, PLN03072, 60S ribosomal protein L12; Pro 0.003
>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11 Back     alignment and domain information 
 Score =  171 bits (436), Expect = 2e-55
 Identities = 70/134 (52%), Positives = 89/134 (66%), Gaps = 3/134 (2%)

Query: 22  IRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYK 81
           I+  +PAG ASP PPLGP LG+ GVNI  FCK+FN +TKD K GLP+P +I V  DRS+ 
Sbjct: 1   IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYK-GLPVPVKITVYNDRSFT 59

Query: 82  LIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYIC 141
             +  PP S  LK+AAG+ KG  KP KE  G +TL  +YEIAKIK  D     +TL+   
Sbjct: 60  FEVKTPPASALLKKAAGIEKGSKKPNKEKVGNITLDQVYEIAKIKLPDL--NAKTLKSAV 117

Query: 142 TSVIGSARSVGIEV 155
             ++G+ARS+GI V
Sbjct: 118 KEILGTARSMGITV 131

Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been implicated in regulating the levels of ubiquinated p53 and MDM2 in the MDM2-p53 feedback loop, which is responsible for apoptosis in response to DNA damage. In bacteria, the "stringent response" to harsh conditions allows bacteria to survive, and ribosomes that lack L11 are deficient in stringent factor stimulation. Length = 131
>gnl|CDD|197819 smart00649, RL11, Ribosomal protein L11/L12 Back     alignment and domain information
>gnl|CDD|233500 TIGR01632, L11_bact, 50S ribosomal protein L11 Back     alignment and domain information
>gnl|CDD|234661 PRK00140, rplK, 50S ribosomal protein L11; Validated Back     alignment and domain information
>gnl|CDD|223158 COG0080, RplK, Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177049 CHL00127, rpl11, ribosomal protein L11; Validated Back     alignment and domain information
>gnl|CDD|234908 PRK01143, rpl11p, 50S ribosomal protein L11P; Validated Back     alignment and domain information
>gnl|CDD|189492 pfam00298, Ribosomal_L11, Ribosomal protein L11, RNA binding domain Back     alignment and domain information
>gnl|CDD|217808 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal domain Back     alignment and domain information
>gnl|CDD|240358 PTZ00321, PTZ00321, ribosomal protein L11; Provisional Back     alignment and domain information
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|178621 PLN03072, PLN03072, 60S ribosomal protein L12; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PRK01143163 rpl11p 50S ribosomal protein L11P; Validated 100.0
TIGR01632140 L11_bact 50S ribosomal protein L11. This model rep 100.0
COG0080141 RplK Ribosomal protein L11 [Translation, ribosomal 100.0
CHL00127140 rpl11 ribosomal protein L11; Validated 100.0
PRK00140141 rplK 50S ribosomal protein L11; Validated 100.0
PRK14539196 50S ribosomal protein L11/unknown domain fusion pr 100.0
smart00649132 RL11 Ribosomal protein L11/L12. 100.0
cd00349131 Ribosomal_L11 Ribosomal protein L11. Ribosomal pro 100.0
KOG3257|consensus168 100.0
PTZ00321 342 ribosomal protein L11; Provisional 100.0
PLN03072166 60S ribosomal protein L12; Provisional 100.0
PTZ00105140 60S ribosomal protein L12; Provisional 100.0
PF0029869 Ribosomal_L11: Ribosomal protein L11, RNA binding 99.95
KOG0886|consensus167 99.95
PF0394660 Ribosomal_L11_N: Ribosomal protein L11, N-terminal 99.95
KOG0455|consensus364 89.04
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 81.82
>PRK01143 rpl11p 50S ribosomal protein L11P; Validated Back     alignment and domain information 
Probab=100.00  E-value=2.5e-61  Score=396.21  Aligned_cols=151  Identities=31%  Similarity=0.653  Sum_probs=146.8

Q ss_pred             eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEE-cCCCceEEEEeCCCHHHHHHHHhC
Q psy39            20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKV-NPDRSYKLIIHKPPTSYYLKQAAG   98 (195)
Q Consensus        20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v-~~Drsf~~~i~~Ppts~Likkaag   98 (195)
                      ++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| .|++|||+|+| |+||+|+|++++||+||||+|++|
T Consensus         3 ~~ikl~v~aG~A~p~PplGPaLG~~Gini~~f~k~fN~~T~~~-~g~~vpV~Itv~~~drsf~~~vk~Pp~s~ll~kaag   81 (163)
T PRK01143          3 KVVEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDF-KGMQVPVKVIVDTDTKKFEIEVGIPPTTALIKKELG   81 (163)
T ss_pred             eEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhc-CCCeEeEEEEEEeCCceEEEEECCCCHHHHHHHHhC
Confidence            5799999999999999999999999999999999999999999 79999999999 999999999999999999999999


Q ss_pred             CCCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEe--------ccCChHHHHHHHHH
Q psy39            99 MAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVV--------DKLDAEEYQQFLEE  170 (195)
Q Consensus        99 i~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~--------~~id~gey~~~l~~  170 (195)
                      +++||++|+++++|+||++||||||+.|++|  +++.+|+++||+|+||||||||+|+        ++||+|+||+||++
T Consensus        82 ~~kgs~~p~~~~vG~It~~qv~eIA~~K~~d--~~~~~l~~~vk~VlGTarSmGi~V~g~~pkev~~~i~~g~~~~~~~~  159 (163)
T PRK01143         82 IEKGSGEPGHEVVGNLSFEQVVKIAIMKKDD--LLSYDLKAAVKEVLGTCVSMGVTVEGKDPKEVQKEVDEGKYDDLLAK  159 (163)
T ss_pred             CcCCCCCCCCceeeeecHHHHHHHHHHHhhh--hccccHHHHHHHHHhhHhhceEEEecCCHHHHHHHcCcccHHHHHHH
Confidence            9999999999999999999999999999999  7899999999999999999999994        78999999999999


Q ss_pred             HHH
Q psy39           171 RKI  173 (195)
Q Consensus       171 ~~~  173 (195)
                      ||+
T Consensus       160 ~~~  162 (163)
T PRK01143        160 YEK  162 (163)
T ss_pred             hhc
Confidence            864

>TIGR01632 L11_bact 50S ribosomal protein L11 Back     alignment and domain information
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00127 rpl11 ribosomal protein L11; Validated Back     alignment and domain information
>PRK00140 rplK 50S ribosomal protein L11; Validated Back     alignment and domain information
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional Back     alignment and domain information
>smart00649 RL11 Ribosomal protein L11/L12 Back     alignment and domain information
>cd00349 Ribosomal_L11 Ribosomal protein L11 Back     alignment and domain information
>KOG3257|consensus Back     alignment and domain information
>PTZ00321 ribosomal protein L11; Provisional Back     alignment and domain information
>PLN03072 60S ribosomal protein L12; Provisional Back     alignment and domain information
>PTZ00105 60S ribosomal protein L12; Provisional Back     alignment and domain information
>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0886|consensus Back     alignment and domain information
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0455|consensus Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
2ftc_G145 Structural Model For The Large Subunit Of The Mamma 5e-34
1mj1_L141 Crystal Structure Of The Ribosome At 5.5 A Resoluti 7e-21
1mms_A140 Crystal Structure Of The Ribosomal Protein L11-Rna 8e-21
1eg0_K140 Fitting Of Components With Known Structure Into An 4e-20
1jqm_A139 Fitting Of L11 Protein And Elongation Factor G (Ef- 4e-20
487d_L133 Seven Ribosomal Proteins Fitted To A Cryo-Electron 6e-20
1r2w_A141 Coordinates Of L11 With 58nts Of 23s Rrna Fitted In 1e-19
1vs6_I142 Crystal Structure Of The Bacterial Ribosome From Es 2e-19
1p85_G141 Real Space Refined Coordinates Of The 50s Subunit F 2e-19
2gya_G139 Structure Of The 50s Subunit Of A Pre-Translocation 6e-19
3egv_B146 Ribosomal Protein L11 Methyltransferase (Prma) In C 1e-18
2j03_K147 Structure Of The Thermus Thermophilus 70s Ribosome 1e-18
3fin_L138 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-18
3cjr_B147 Ribosomal Protein L11 Methyltransferase (prma) In C 5e-18
3cjq_B146 Ribosomal Protein L11 Methyltransferase (Prma) In C 5e-18
1pnu_G143 Crystal Structure Of A Streptomycin Dependent Ribos 7e-16
1nkw_G144 Crystal Structure Of The Large Ribosomal Subunit Fr 7e-16
3bbo_K224 Homology Model For The Spinach Chloroplast 50s Subu 7e-15
3j21_H164 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-11
2bcw_A65 Coordinates Of The N-Terminal Domain Of Ribosomal P 3e-04
1y39_A76 Co-Evolution Of Protein And Rna Structures Within A 7e-04
1hc8_A76 Crystal Structure Of A Conserved Ribosomal Protein- 8e-04
1aci_A76 L11 Ribosomal Protein Rna Binding Domain, Nmr, 20 S 9e-04
>pdb|2FTC|G Chain G, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
Query: 43  ERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGMAKG 102
           +RGV+I  FCK+FNE+TKD+KEG+PLPT+I V PDR++++ I +P  SY+LK AAG+ KG
Sbjct: 29  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 88
Query: 103 VMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECE--TLEYICTSVIGSARSVGIEVV 156
             + GKE+ G +TLKH+YEIA+IK++D AF  +   L  +  S+IGSARS+GI VV
Sbjct: 89  ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVV 144
>pdb|1MJ1|L Chain L, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 141 Back     alignment and structure
>pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L11-Rna Complex Length = 140 Back     alignment and structure
>pdb|1JQM|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G, Gdp And Fusidic Acid Length = 139 Back     alignment and structure
>pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 133 Back     alignment and structure
>pdb|1R2W|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The Cryo-Em Map Of The 70s Ribosome Length = 141 Back     alignment and structure
>pdb|1VS6|I Chain I, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 142 Back     alignment and structure
>pdb|1P85|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 141 Back     alignment and structure
>pdb|2GYA|G Chain G, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 139 Back     alignment and structure
>pdb|3EGV|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex With Trimethylated Ribosomal Protein L11 Length = 146 Back     alignment and structure
>pdb|3FIN|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138 Back     alignment and structure
>pdb|3CJR|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Ribosomal Protein L11 (k39a) And Inhibitor Sinefungin Length = 147 Back     alignment and structure
>pdb|3CJQ|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex With Dimethylated Ribosomal Protein L11 In Space Group P212121 Length = 146 Back     alignment and structure
>pdb|1PNU|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 143 Back     alignment and structure
>pdb|1NKW|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 144 Back     alignment and structure
>pdb|3BBO|K Chain K, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 224 Back     alignment and structure
>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 164 Back     alignment and structure
>pdb|2BCW|A Chain A, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 65 Back     alignment and structure
>pdb|1Y39|A Chain A, Co-Evolution Of Protein And Rna Structures Within A Highly Conserved Ribosomal Domain Length = 76 Back     alignment and structure
>pdb|1HC8|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna Complex Length = 76 Back     alignment and structure
>pdb|1ACI|A Chain A, L11 Ribosomal Protein Rna Binding Domain, Nmr, 20 Structures Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1vq8_I162 50S ribosomal protein L11P; ribosome 50S, protein- 1e-48
3bbo_K224 Ribosomal protein L11; large ribosomal subunit, sp 1e-38
3egv_B146 50S ribosomal protein L11, ribosomal protein L11 m 2e-37
3r8s_I141 50S ribosomal protein L11; protein biosynthesis, R 2e-36
1mms_A140 Protein (ribosomal protein L11); RNA-protein compl 6e-34
2ftc_G145 L11MT, MRP-L11, 39S ribosomal protein L11, mitocho 3e-33
3iz5_J166 60S ribosomal protein L12 (L11P); eukaryotic ribos 1e-31
2zkr_i165 60S ribosomal protein L12; protein-RNA complex, 60 2e-29
1hc8_A76 Ribosomal protein L11; ribosome, ribosomal RNA, te 2e-20
3cjs_B72 50S ribosomal protein L11, ribosomal protein L11 m 2e-19
1qa6_A67 Ribosomal protein L11; ribosomal RNA, tertiary str 9e-18
1wib_A92 60S ribosomal protein L12; N-terminal domain, stru 8e-07
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ... Length = 162 Back     alignment and structure
 Score =  154 bits (392), Expect = 1e-48
 Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 20  RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRS 79
             I   +P G A+PGPPLGP LG   V++    ++ N++T    +G  +P  +K + D S
Sbjct: 3   GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAA-FDGTEVPVTVKYDDDGS 61

Query: 80  YKLIIHKPPTSYYLKQAAGMAKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEY 139
           +++ +  PPT+  +K  AG   G  +P ++    L++  + +IA+ K  D       L  
Sbjct: 62  FEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDL--LSYDLTN 119

Query: 140 ICTSVIGSARSVGIEVVDKLDAEEYQQFLEERKIIVAEQKKELEEA 185
               V+G+  S+G+ +  + +  E+++ ++  +    +      +A
Sbjct: 120 AAKEVVGTCTSLGVTIEGE-NPREFKERIDAGEY--DDVFAAEAQA 162
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 224 Back     alignment and structure
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ... Length = 146 Back     alignment and structure
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ... Length = 141 Back     alignment and structure
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L Length = 140 Back     alignment and structure
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G Length = 145 Back     alignment and structure
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K Length = 165 Back     alignment and structure
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Length = 76 Back     alignment and structure
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A Length = 72 Back     alignment and structure
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C Length = 67 Back     alignment and structure
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1 Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1vq8_I162 50S ribosomal protein L11P; ribosome 50S, protein- 100.0
3j21_H164 50S ribosomal protein L11P; archaea, archaeal, KIN 100.0
2ftc_G145 L11MT, MRP-L11, 39S ribosomal protein L11, mitocho 100.0
1mms_A140 Protein (ribosomal protein L11); RNA-protein compl 100.0
3egv_B146 50S ribosomal protein L11, ribosomal protein L11 m 100.0
3bbo_K224 Ribosomal protein L11; large ribosomal subunit, sp 100.0
3r8s_I141 50S ribosomal protein L11; protein biosynthesis, R 100.0
2zkr_i165 60S ribosomal protein L12; protein-RNA complex, 60 100.0
3iz5_J166 60S ribosomal protein L12 (L11P); eukaryotic ribos 100.0
1wib_A92 60S ribosomal protein L12; N-terminal domain, stru 99.97
3cjs_B72 50S ribosomal protein L11, ribosomal protein L11 m 99.97
1hc8_A76 Ribosomal protein L11; ribosome, ribosomal RNA, te 99.97
1qa6_A67 Ribosomal protein L11; ribosomal RNA, tertiary str 99.95
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ... Back     alignment and structure
Probab=100.00  E-value=3.4e-63  Score=405.68  Aligned_cols=151  Identities=28%  Similarity=0.582  Sum_probs=68.7

Q ss_pred             eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeCCCHHHHHHHHhCC
Q psy39            20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHKPPTSYYLKQAAGM   99 (195)
Q Consensus        20 ~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~Ppts~Likkaagi   99 (195)
                      .+|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++| +|++|||+|+||+||||+|++++||+||||+|++|+
T Consensus         3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~-~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi   81 (162)
T 1vq8_I            3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAF-DGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF   81 (162)
T ss_dssp             -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred             eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence            4789999999999999999999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             CCCCCCCCCeeeccccHHHHHHHHHHhccCcccccccHHHHHHHHHHhhhccCeEEe--------ccCChHHHHHHHHHH
Q psy39           100 AKGVMKPGKEIGGKLTLKHIYEIAKIKSEDSAFECETLEYICTSVIGSARSVGIEVV--------DKLDAEEYQQFLEER  171 (195)
Q Consensus       100 ~kgs~~p~~~~~G~Itl~~v~eIAk~K~~d~~l~~~~l~~~vk~VlGTArSMGi~V~--------~~id~gey~~~l~~~  171 (195)
                      ++||++|+++++|+||++||||||+.|++|  |++.+|+++||+|+||||||||+|+        ++||+|+||+||++|
T Consensus        82 ~kgs~~p~k~~vG~it~~qv~eIA~~K~~d--l~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I~~g~~~~~l~~~  159 (162)
T 1vq8_I           82 ETGSGEPQEDFVADLSVDQVKQIAEQKHPD--LLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERIDAGEYDDVFAAE  159 (162)
T ss_dssp             CSCCSSTTTSCCEEECHHHHHHHHHHTTTT--CCCSSHHHHHHHHHHHTTTTTEEEC-----------------------
T ss_pred             CCCCCCCCCceeeeeeHHHHHHHHHHHHHh--hcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhcChhhHHHHHHHh
Confidence            999999999999999999999999999999  8899999999999999999999985        699999999999999


Q ss_pred             HH
Q psy39           172 KI  173 (195)
Q Consensus       172 ~~  173 (195)
                      ++
T Consensus       160 ~~  161 (162)
T 1vq8_I          160 AQ  161 (162)
T ss_dssp             --
T ss_pred             hc
Confidence            75
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G Back     alignment and structure
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L Back     alignment and structure
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ... Back     alignment and structure
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ... Back     alignment and structure
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K Back     alignment and structure
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1 Back     alignment and structure
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A Back     alignment and structure
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Back     alignment and structure
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d2gycg271 d.47.1.1 (G:2-72) Ribosomal protein L11, N-termina 3e-24
d1mmsa263 d.47.1.1 (A:8-70) Ribosomal protein L11, N-termina 5e-24
d3cjsb170 d.47.1.1 (B:1-70) Ribosomal protein L11, N-termina 2e-21
d1hc8a_74 a.4.7.1 (A:) Ribosomal protein L11, C-terminal dom 1e-20
d1wiba_92 d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mu 5e-20
d1mmsa170 a.4.7.1 (A:71-140) Ribosomal protein L11, C-termin 6e-20
d3cjrb167 a.4.7.1 (B:71-137) Ribosomal protein L11, C-termin 8e-20
d1vqoi170 a.4.7.1 (I:71-140) Ribosomal protein L11, C-termin 4e-19
d2gycg168 a.4.7.1 (G:73-140) Ribosomal protein L11, C-termin 5e-19
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 71 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 88.6 bits (220), Expect = 3e-24
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query: 20 RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRS 79
            ++  + AG+A+P PP+GP LG++GVNI  FCK FN KT  +++GLP+P  I V  DRS
Sbjct: 5  AYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRS 64

Query: 80 YKLIIH 85
          +  +  
Sbjct: 65 FTFVTK 70
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 63 Back     information, alignment and structure
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 70 Back     information, alignment and structure
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 70 Back     information, alignment and structure
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 67 Back     information, alignment and structure
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 70 Back     information, alignment and structure
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d2gycg271 Ribosomal protein L11, N-terminal domain {Escheric 99.97
d3cjsb170 Ribosomal protein L11, N-terminal domain {Thermus 99.97
d1mmsa263 Ribosomal protein L11, N-terminal domain {Thermoto 99.97
d1wiba_92 60S ribosomal protein L12 {Mouse (Mus musculus) [T 99.97
d1hc8a_74 Ribosomal protein L11, C-terminal domain {Bacillus 99.96
d1mmsa170 Ribosomal protein L11, C-terminal domain {Thermoto 99.96
d1vqoi170 Ribosomal protein L11, C-terminal domain {Archaeon 99.96
d1xbpg172 Ribosomal protein L11, C-terminal domain {Deinococ 99.95
d3cjrb167 Ribosomal protein L11, C-terminal domain {Thermus 99.94
d2gycg168 Ribosomal protein L11, C-terminal domain {Escheric 99.94
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: Ribosomal protein L11, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.5e-34  Score=204.78  Aligned_cols=70  Identities=43%  Similarity=0.923  Sum_probs=66.8

Q ss_pred             cce-eEEEEEeecccCCCCCCCCCCcCCCCCchhHHHHHHHHHhhCccCCCCeeEEEEEcCCCceEEEEeC
Q psy39            17 DNF-RMIRTNIPAGLASPGPPLGPTLGERGVNIATFCKDFNEKTKDLKEGLPLPTRIKVNPDRSYKLIIHK   86 (195)
Q Consensus        17 kkv-~~ikl~v~aGkA~p~PplGP~LG~~GIni~~fck~fN~~Tk~~~~G~~vpV~I~v~~Drsf~~~i~~   86 (195)
                      |+| ++|+|+|+||+|+|+|||||+|||+|||||+||++||++|++|+.|++|||+|+||+||||+|+++|
T Consensus         1 Kkv~~~ikl~i~aG~A~PaPPvGpaLG~~GiNi~~F~k~fN~~T~~~~~G~~vpV~Itv~~Drsf~f~ikT   71 (71)
T d2gycg2           1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKT   71 (71)
T ss_dssp             CCCCCCCCCCBCTTCCCSSSSTTTTTTSSSCCSSSSSTTTTTTSCSSCTTCCBCCBCCCCSSSCCCCBCCC
T ss_pred             CceeEEEEEEEecCCCCCCCCCcchhhhcCcCHHHHHHHHHHHhhccCCCCEEEEEEEEeCCCeEEEEEcC
Confidence            345 8899999999999999999999999999999999999999999899999999999999999999875
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure