Psyllid ID: psy403

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccHHHHHHHHHcHHHccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHccccEEEEEEccccccccccccEEcccccccccccEEEEEEEEccccccccEEEEEcccccccccccEEEEEEcccccccccccccccEEEEEEEEcccccccccEEEEcccccccccccEEEEEEcccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHccEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHEEEccccEEEcccccHHHHHHHHHHcccEEEEEccccHHHHcccccEEcccccccccccEEEEEEEEEEEccEEEEEEEEccEcccccEccEEEEEcccEEcccccccccEcEEEEEEEEcccccEccEEEEEccEcccccEccEEEEEccccccccHccccEEEEc
Coil and Loop (DISEMBL)
MDQAFQYikdnhgidtessypyeAMMSFLPSFLFRRLCYLLTIchkrsnqvtvtsgddncrykraksgavdrgyvdipegdeyKLKAAVATIGPVsiaidashqsfqfysegvyyepecnstqldHAVLVVGygtdengndyWLVKNswnttwgdegyikMARNrvyyepecnstqldHAVLVVGygtdengndyWLVKNswnttwgdegYIKMARNRenncgvassasfplv
Flexible Loop (DISEMBL)
MDQAFqyikdnhgidtessypYEAMMSFLPSFLFRRLCYLLTIchkrsnqvtvtsgddncrykraksgavdrgyvdiPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENncgvassasfplv
Low Complexity Region (SEG)
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV
Disordered region (IsUnstruct)
******YIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR*****************
Disordered Region (DISOPRED)
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV
Disordered Region (DISEMBL)
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNC***********
Disordered Region (DISPRO)
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q26636	339	Cathepsin L OS=Sarcophaga	N/A	N/A	0.575	0.395	0.6	2e-51
Q95029	371	Cathepsin L OS=Drosophila	yes	N/A	0.575	0.361	0.575	3e-51
P09648	218	Cathepsin L1 (Fragments)	no	N/A	0.575	0.614	0.515	5e-41
P13277	322	Digestive cysteine protei	N/A	N/A	0.570	0.413	0.509	4e-40
P06797	334	Cathepsin L1 OS=Mus muscu	yes	N/A	0.570	0.398	0.5	8e-39
Q10991	217	Cathepsin L1 OS=Ovis arie	N/A	N/A	0.570	0.612	0.478	2e-38
P25782	323	Digestive cysteine protei	N/A	N/A	0.570	0.411	0.490	4e-38
P07154	334	Cathepsin L1 OS=Rattus no	yes	N/A	0.570	0.398	0.494	1e-37
P07711	333	Cathepsin L1 OS=Homo sapi	yes	N/A	0.570	0.399	0.470	7e-37
P25784	321	Digestive cysteine protei	N/A	N/A	0.566	0.411	0.509	7e-37

>sp|Q26636|CATL_SARPE Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 114/165 (69%), Gaps = 31/165 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF+YIKDN GIDTE SYPYE +                               DD+C
Sbjct: 191 MDNAFRYIKDNGGIDTEKSYPYEGI-------------------------------DDSC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            + +A  GA D G+VDIPEGDE K+K AVAT+GPVS+AIDASH+SFQ YSEGVY EPEC+
Sbjct: 220 HFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECD 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
              LDH VLVVGYGTDE+G DYWLVKNSW TTWG++GYIKMARN+
Sbjct: 280 EQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQ 324

Important for the overall degradation of proteins in lysosomes. Required for differentiation of imaginal disks.
Sarcophaga peregrina (taxid: 7386)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1EC: 5

>sp|Q95029|CATL_DROME Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=2 SV=2

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/165 (57%), Positives = 114/165 (69%), Gaps = 31/165 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF+YIKDN GIDTE SYPYEA+                               DD+C
Sbjct: 223 MDNAFRYIKDNGGIDTEKSYPYEAI-------------------------------DDSC 251

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            + +   GA DRG+ DIP+GDE K+  AVAT+GPVS+AIDASH+SFQFYSEGVY EP+C+
Sbjct: 252 HFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCD 311

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  LDH VLVVG+GTDE+G DYWLVKNSW TTWGD+G+IKM RN+
Sbjct: 312 AQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNK 356

Important for the overall degradation of proteins in lysosomes. Essential for adult male and female fertility. May play a role in digestion.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P09648|CATL1_CHICK Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1

 Score =  167 bits (423), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 103/165 (62%), Gaps = 31/165 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQY++DN GID+E SYPY A                                D++C
Sbjct: 70  MDQAFQYVQDNGGIDSEESYPYTA------------------------------KDDEDC 99

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RYK   + A D G+VDIP+G E  L  AVA++GPVS+AIDA H SFQFY  G+YYEP+C+
Sbjct: 100 RYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCS 159

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG  E G  YW+VKNSW   WGD+GYI MA++R
Sbjct: 160 SEDLDHGVLVVGYGF-EGGKKYWIVKNSWGEKWGDKGYIYMAKDR 203

Important for the overall degradation of proteins in lysosomes.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P13277|CYSP1_HOMAM Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 102/165 (61%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           +++A  Y++DN G+DTESSYPYEA                                D+ C
Sbjct: 175 VERAIMYVRDNGGVDTESSYPYEAR-------------------------------DNTC 203

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R+     GA   GYV I +G E  LK A   IGP+S+AIDASH+SFQ Y  GVYYEP C+
Sbjct: 204 RFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCS 263

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S+QLDHAVL VGYG+ E G D+WLVKNSW T+WG+ GYIKMARNR
Sbjct: 264 SSQLDHAVLAVGYGS-EGGQDFWLVKNSWATSWGESGYIKMARNR 307

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P06797|CATL1_MOUSE Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2

 Score =  160 bits (404), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 104/168 (61%), Gaps = 35/168 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQYIK+N G+D+E SYPYEA                                D +C
Sbjct: 183 MDFAFQYIKENGGLDSEESYPYEAK-------------------------------DGSC 211

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y+   + A D G+VDIP+  E  L  AVAT+GP+S+A+DASH S QFYS G+YYEP C+
Sbjct: 212 KYRAEFAVANDTGFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCS 270

Query: 121 STQLDHAVLVVGY---GTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VL+VGY   GTD N N YWLVKNSW + WG EGYIK+A++R
Sbjct: 271 SKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDR 318

Important for the overall degradation of proteins in lysosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|Q10991|CATL1_SHEEP Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 101/165 (61%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQYIK+N G+D+E SYPYEA                                D +C
Sbjct: 70  MDNAFQYIKENGGLDSEESYPYEAT-------------------------------DTSC 98

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            YK   S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H SFQFY  G+YY+P+C+
Sbjct: 99  NYKPEYSAAKDTGFVDIPQ-REKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCS 157

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG +   N +W+VKNSW   WG++GY+KMA+++
Sbjct: 158 SKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKDQ 202

Important for the overall degradation of proteins in lysosomes.

Ovis aries (taxid: 9940)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 99/165 (60%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AF YIK N+GIDTE++YPYEA                                D +C
Sbjct: 176 MNDAFDYIKANNGIDTEAAYPYEAR-------------------------------DGSC 204

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R+      A   G+ +I  G E  L+ AV  IGP+S+ IDA+H SFQFYS GVYYEP C+
Sbjct: 205 RFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCS 264

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
            + LDHAVL VGYG+ E G D+WLVKNSW T+WGD GYIKM+RNR
Sbjct: 265 PSYLDHAVLAVGYGS-EGGQDFWLVKNSWATSWGDAGYIKMSRNR 308

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|P07154|CATL1_RAT Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 103/168 (61%), Gaps = 35/168 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQYIK+N G+D+E SYPYEA                                D +C
Sbjct: 183 MDFAFQYIKENGGLDSEESYPYEAK-------------------------------DGSC 211

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y+   + A D G+VDIP+  E  L  AVAT+GP+S+A+DASH S QFYS G+YYEP C+
Sbjct: 212 KYRAEYAVANDTGFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCS 270

Query: 121 STQLDHAVLVVGY---GTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGY   GTD N + YWLVKNSW   WG +GYIK+A++R
Sbjct: 271 SKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDR 318

Important for the overall degradation of proteins in lysosomes. Procathepsin L is required for maximal stimulation of steroidogenesis by TIMP1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P07711|CATL1_HUMAN Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2

 Score =  154 bits (388), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 183 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 211

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 212 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 270

Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 271 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 318

Important for the overall degradation of proteins in lysosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 5

>sp|P25784|CYSP3_HOMAM Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1

 Score =  154 bits (388), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 100/165 (60%), Gaps = 33/165 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AF YIKDN GIDTESSYPYEA                                D +C
Sbjct: 175 MTSAFDYIKDNGGIDTESSYPYEAE-------------------------------DRSC 203

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R+     GA+  G V++   +E  L+ AV+ +GP+S+AIDASH SFQFYS GVYYE  C+
Sbjct: 204 RFDANSIGAICTGSVEVQHTEE-ALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCS 262

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
            T LDH VL VGYGT E+  DYWLVKNSW ++WGD GYIKM+RNR
Sbjct: 263 PTFLDHGVLAVGYGT-ESTKDYWLVKNSWGSSWGDAGYIKMSRNR 306

Homarus americanus (taxid: 6706)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
328776427	351	PREDICTED: cathepsin L-like [Apis mellif	0.579	0.384	0.638	4e-54
340727787	343	PREDICTED: cathepsin L-like [Bombus terr	0.579	0.393	0.650	5e-54
350412176	343	PREDICTED: cathepsin L-like [Bombus impa	0.579	0.393	0.650	5e-54
380014284	345	PREDICTED: cathepsin L-like [Apis florea	0.579	0.391	0.632	2e-53
307192137	339	Cathepsin L [Harpegnathos saltator]	0.639	0.439	0.497	9e-52
312381833	344	hypothetical protein AND_05794 [Anophele	0.575	0.389	0.6	2e-51
151573014	334	cathepsin L-1 [Artemia salina]	0.570	0.398	0.636	4e-51
383849553	343	PREDICTED: cathepsin L-like [Megachile r	0.570	0.387	0.609	8e-51
157132324	339	cathepsin l [Aedes aegypti] gi|108881694	0.575	0.395	0.612	9e-51
55740402	338	cathepsin L precursor [Artemia francisca	0.570	0.393	0.630	1e-50

>gi|328776427|ref|XP_625135.3| PREDICTED: cathepsin L-like [Apis mellifera]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/166 (63%), Positives = 119/166 (71%), Gaps = 31/166 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN G+DTE+SYPYEA                                +D C
Sbjct: 197 MDQAFQYIKDNKGLDTEASYPYEAE-------------------------------NDKC 225

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY  A SGA+D GY+DIP GDE  LKAAVATIGPVS+AIDASHQSFQFYSEGVYYEPEC+
Sbjct: 226 RYNPANSGAIDVGYIDIPTGDEKLLKAAVATIGPVSVAIDASHQSFQFYSEGVYYEPECS 285

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166
           S +LDH VLV+GYGT+ENG DYWLVKNSW  TWG+ GYIKMARN++
Sbjct: 286 SEELDHGVLVIGYGTNENGQDYWLVKNSWGETWGNNGYIKMARNKL 331

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727787|ref|XP_003402217.1| PREDICTED: cathepsin L-like [Bombus terrestris]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 117/166 (70%), Gaps = 31/166 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN G+DTE +YPYEA                                +D C
Sbjct: 191 MDQAFQYIKDNKGLDTEVTYPYEAE-------------------------------NDKC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY  A SGA D GYVDIP+G+E KLKAAVATIGPVS+AIDASHQSFQFYSEGVYYEPEC+
Sbjct: 220 RYNAANSGARDVGYVDIPQGNEKKLKAAVATIGPVSVAIDASHQSFQFYSEGVYYEPECS 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166
           S  LDH VL VGYGTDENG DYWLVKNSW  TWGD GYIKMARN++
Sbjct: 280 SENLDHGVLAVGYGTDENGQDYWLVKNSWGETWGDNGYIKMARNKL 325

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412176|ref|XP_003489564.1| PREDICTED: cathepsin L-like [Bombus impatiens]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 117/166 (70%), Gaps = 31/166 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN G+DTE +YPYEA                                +D C
Sbjct: 191 MDQAFQYIKDNKGLDTEVTYPYEAE-------------------------------NDKC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY  A SGA D GYVDIP+G+E KLKAAVATIGPVS+AIDASHQSFQFYSEGVYYEPEC+
Sbjct: 220 RYNAANSGARDVGYVDIPQGNEKKLKAAVATIGPVSVAIDASHQSFQFYSEGVYYEPECS 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166
           S  LDH VL VGYGTDENG DYWLVKNSW  TWGD GYIKMARN++
Sbjct: 280 SENLDHGVLAVGYGTDENGQDYWLVKNSWGETWGDNGYIKMARNKL 325

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014284|ref|XP_003691169.1| PREDICTED: cathepsin L-like [Apis florea]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 119/166 (71%), Gaps = 31/166 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN G+DTE+SYPYEA                                +D C
Sbjct: 191 MDQAFQYIKDNKGLDTEASYPYEAE-------------------------------NDKC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY  A SGA+D GY+DIP G+E  LKAAVATIGPVS+AIDASHQSFQFYSEGVYYEPEC+
Sbjct: 220 RYNPANSGAIDVGYIDIPTGNEKLLKAAVATIGPVSVAIDASHQSFQFYSEGVYYEPECS 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166
           S +LDH VLV+GYGT+ENG DYWLVKNSW  TWG+ GYIKMARN++
Sbjct: 280 SEELDHGVLVIGYGTNENGEDYWLVKNSWGETWGNNGYIKMARNKL 325

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192137|gb|EFN75465.1| Cathepsin L [Harpegnathos saltator]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 129/233 (55%), Gaps = 84/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDNHG+DTE SYPYEA                                +D C
Sbjct: 191 MDQAFQYIKDNHGLDTEISYPYEAE-------------------------------NDKC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY    +GA D GYVDIPEG+E KLKAAVATIGPVS+AIDAS +SFQFY EGVYYEP C+
Sbjct: 220 RYNPRNNGATDSGYVDIPEGNEKKLKAAVATIGPVSVAIDASAESFQFYREGVYYEPRCS 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           S  LDH VLVVGYGTD+N  DYWLVKNSW  TWGDEGYIKMARN+               
Sbjct: 280 SENLDHGVLVVGYGTDDNDQDYWLVKNSWGVTWGDEGYIKMARNK--------------- 324

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                                 +N+CG+ASSAS+PLV
Sbjct: 325 --------------------------------------DNHCGIASSASYPLV 339

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381833|gb|EFR27483.1| hypothetical protein AND_05794 [Anopheles darlingi]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 114/165 (69%), Gaps = 31/165 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY+KDN GIDTE +YPYEA+                               DD C
Sbjct: 196 MDNAFQYVKDNKGIDTEKAYPYEAI-------------------------------DDEC 224

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y     GA D+G+VDIP+GDE  LK A+AT+GPVS+AIDASH+SFQFYSEGVYYEP+C+
Sbjct: 225 HYNPKAIGATDKGFVDIPQGDEKALKKALATVGPVSVAIDASHESFQFYSEGVYYEPQCD 284

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S QLDH VL VGYGT E+G DYWLVKNSW TTWGD+GY+KMARNR
Sbjct: 285 SEQLDHGVLAVGYGTTEDGEDYWLVKNSWGTTWGDQGYVKMARNR 329

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|151573014|gb|ABS17682.1| cathepsin L-1 [Artemia salina]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/165 (63%), Positives = 116/165 (70%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN GIDTE++YPYEA                                DD C
Sbjct: 187 MDQAFQYIKDNKGIDTENTYPYEAE-------------------------------DDVC 215

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY     GAVDRG+VDIP G+E KLKAAVAT+GPVS+AIDASH+SFQFYS+GVYYEP C+
Sbjct: 216 RYNPRNRGAVDRGFVDIPSGEEDKLKAAVATVGPVSVAIDASHESFQFYSKGVYYEPSCD 275

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG+D NG DYWLVKNSW+  WGDEGYIKMARNR
Sbjct: 276 SDDLDHGVLVVGYGSD-NGKDYWLVKNSWSEHWGDEGYIKMARNR 319

Source: Artemia salina

Species: Artemia salina

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849553|ref|XP_003700409.1| PREDICTED: cathepsin L-like [Megachile rotundata]

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 114/164 (69%), Gaps = 31/164 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAF YIKDN G+DTE +YPYE                                 DD C
Sbjct: 191 MDQAFSYIKDNKGLDTEKTYPYEGE-------------------------------DDKC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY +  SGA D G+VDIP GDE KLKAAVAT+GPVS+AIDASHQSFQFYS+G+Y+EPEC+
Sbjct: 220 RYDKRSSGASDVGFVDIPVGDEQKLKAAVATVGPVSVAIDASHQSFQFYSDGIYFEPECS 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           ST LDH VLVVGYGTDE G DYW+VKNSW  +WG++GYIKMARN
Sbjct: 280 STNLDHGVLVVGYGTDEEGRDYWIVKNSWGESWGEKGYIKMARN 323

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132324|ref|XP_001655999.1| cathepsin l [Aedes aegypti] gi|108881694|gb|EAT45919.1| AAEL002833-PA [Aedes aegypti]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/165 (61%), Positives = 112/165 (67%), Gaps = 31/165 (18%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQYIKDN GIDTE SYPYEA+                               DD C
Sbjct: 191 MDYAFQYIKDNGGIDTEKSYPYEAI-------------------------------DDTC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            +     GA D+GYVDIP+GDE  LK A+AT+GPVSIAIDASH+SFQFYSEGVYYEP+C+
Sbjct: 220 HFNPKAVGATDKGYVDIPQGDEEALKKALATVGPVSIAIDASHESFQFYSEGVYYEPQCD 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VL VGYGT E G DYWLVKNSW TTWGD+GY+KMARNR
Sbjct: 280 SENLDHGVLAVGYGTSEEGEDYWLVKNSWGTTWGDQGYVKMARNR 324

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|55740402|gb|AAV63977.1| cathepsin L precursor [Artemia franciscana]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 116/165 (70%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MDQAFQYIKDN GIDTE++YPYEA                                DD C
Sbjct: 191 MDQAFQYIKDNKGIDTENTYPYEAE-------------------------------DDVC 219

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY     GAVDRG+VDIP G+E KLKAAVAT+GPVS+AIDASH+SFQFYS+GVYYEP C+
Sbjct: 220 RYNPRNRGAVDRGFVDIPSGEEDKLKAAVATVGPVSVAIDASHESFQFYSKGVYYEPSCD 279

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG+D NG DYWLVKNSW+  WGDEGYIK+ARNR
Sbjct: 280 SDDLDHGVLVVGYGSD-NGKDYWLVKNSWSEHWGDEGYIKIARNR 323

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
FB|FBgn0013770	371	Cp1 "Cysteine proteinase-1" [D	0.484	0.304	0.663	9.9e-52
WB|WBGene00000776	337	cpl-1 [Caenorhabditis elegans	0.467	0.323	0.623	2.3e-46
DICTYBASE|DDB_G0272815	344	cprE "cysteine proteinase 5" [	0.321	0.218	0.565	4.6e-46
UNIPROTKB|F1NEC8	218	CTSL2 "Uncharacterized protein	0.463	0.495	0.614	3.7e-44
UNIPROTKB|P09648	218	CTSL1 "Cathepsin L1" [Gallus g	0.463	0.495	0.614	4.7e-44
UNIPROTKB|F1NYJ1	339	CTSL2 "Uncharacterized protein	0.467	0.321	0.598	9.6e-44
ZFIN|ZDB-GENE-040718-61	334	ctsl.1 "cathepsin L.1" [Danio	0.463	0.323	0.605	6.7e-43
UNIPROTKB|F1S4J6	332	Ssc.54235 "Cathepsin L1" [Sus	0.463	0.325	0.585	2.2e-42
UNIPROTKB|Q10991	217	CTSL "Cathepsin L1" [Ovis arie	0.463	0.497	0.550	9.5e-42
MGI|MGI:88564	334	Ctsl "cathepsin L" [Mus muscul	0.463	0.323	0.580	1.5e-41

FB|FBgn0013770 Cp1 "Cysteine proteinase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 445 (161.7 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 77/116 (66%), Positives = 95/116 (81%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             DD+C + +   GA DRG+ DIP+GDE K+  AVAT+GPVS+AIDASH+SFQFYSEGVY E
Sbjct:   248 DDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNE 307

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             P+C++  LDH VLVVG+GTDE+G DYWLVKNSW TTWGD+G+IKM RN+   E +C
Sbjct:   308 PQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNK---ENQC 360

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS;NAS

GO:0030163 "protein catabolic process" evidence=NAS

GO:0005764 "lysosome" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0045169 "fusome" evidence=IDA

WB|WBGene00000776 cpl-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 391 (142.7 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 68/109 (62%), Positives = 84/109 (77%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D  C + +   GA D+GYVD PEGDE +LK AVAT GP+SIAIDA H+SFQ Y +GVYY+
Sbjct:   214 DMKCHFNKKTVGADDKGYVDTPEGDEEQLKIAVATQGPISIAIDAGHRSFQLYKKGVYYD 273

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
              EC+S +LDH VL+VGYGTD    DYW+VKNSW   WG++GYI++ARNR
Sbjct:   274 EECSSEELDHGVLLVGYGTDPEHGDYWIVKNSWGAGWGEKGYIRIARNR 322

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IMP

GO:0031983 "vesicle lumen" evidence=IDA

GO:0042718 "yolk granule" evidence=IDA

DICTYBASE|DDB_G0272815 cprE "cysteine proteinase 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
 Identities = 43/76 (56%), Positives = 52/76 (68%)

Query:    60 CRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
             C YK   SGA    Y  +  G E  L++AV  + PVS+AIDASHQSFQ Y+ G+YYEPEC
Sbjct:   207 CEYKSENSGATLSSYKTVTAGSESSLESAV-NVNPVSVAIDASHQSFQLYTSGIYYEPEC 265

Query:   120 NSTQLDHAVLVVGYGT 135
             +S  LDH VL VGYG+
Sbjct:   266 SSENLDHGVLAVGYGS 281

GO:0005615 "extracellular space" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NEC8 CTSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 380 (138.8 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 67/109 (61%), Positives = 83/109 (76%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D++CRYK   + A D G+VDIP+G E  L  AVA++GPVS+AIDA H SFQFY  G+YYE
Sbjct:    96 DEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYE 155

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S  LDH VLVVGYG  E+G  YW+VKNSW   WGD+GYI MA++R
Sbjct:   156 PDCSSEDLDHGVLVVGYGF-EDGKKYWIVKNSWGEKWGDKGYIYMAKDR 203

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|P09648 CTSL1 "Cathepsin L1" [Gallus gallus (taxid:9031)]

 Score = 379 (138.5 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 67/109 (61%), Positives = 82/109 (75%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D++CRYK   + A D G+VDIP+G E  L  AVA++GPVS+AIDA H SFQFY  G+YYE
Sbjct:    96 DEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYE 155

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S  LDH VLVVGYG  E G  YW+VKNSW   WGD+GYI MA++R
Sbjct:   156 PDCSSEDLDHGVLVVGYGF-EGGKKYWIVKNSWGEKWGDKGYIYMAKDR 203

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

UNIPROTKB|F1NYJ1 CTSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 67/112 (59%), Positives = 83/112 (74%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D++CRYK   + A D G+VDIP+G E  L  AVA++GPVS+AIDA H SFQFY  G+YYE
Sbjct:   213 DEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYE 272

Query:   117 PECNSTQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S  LDH VLVVGYG    D +G  YW+VKNSW   WGD+GYI MA++R
Sbjct:   273 PDCSSEDLDHGVLVVGYGFEGEDVDGKKYWIVKNSWGEKWGDKGYIYMAKDR 324

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-040718-61 ctsl.1 "cathepsin L.1" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 66/109 (60%), Positives = 81/109 (74%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D  CR+  +  GA   GYVDI  GDE  L+ AVATIGP+S+AIDA H SFQ YS GVY E
Sbjct:   212 DGECRFNPSTVGASCTGYVDIASGDESALQEAVATIGPISVAIDAGHSSFQLYSSGVYNE 271

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S++LDH VL VGYG+  NG+DYW+VKNSW   WG +GYI M+RN+
Sbjct:   272 PDCSSSELDHGVLAVGYGSS-NGDDYWIVKNSWGLDWGVQGYILMSRNK 319

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1S4J6 Ssc.54235 "Cathepsin L1" [Sus scrofa (taxid:9823)]

 Score = 368 (134.6 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 65/111 (58%), Positives = 85/111 (76%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D +C+YK   S A D GYVDIP+ ++  +KA VAT+GP+S+ IDASH+SFQFYS G+Y+E
Sbjct:   208 DGSCKYKPQSSAANDTGYVDIPKQEKALMKA-VATVGPISVGIDASHESFQFYSTGIYFE 266

Query:   117 PECNSTQLDHAVLVVGYGTD--ENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S  LDH VLVVGYG +   + N YWLVKNSW  TWG +GYIKM +++
Sbjct:   267 PQCSSEDLDHGVLVVGYGVEGAHSNNKYWLVKNSWGNTWGMDGYIKMTKDQ 317

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0002250 "adaptive immune response" evidence=IEA

UNIPROTKB|Q10991 CTSL "Cathepsin L1" [Ovis aries (taxid:9940)]

 Score = 357 (130.7 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 60/109 (55%), Positives = 82/109 (75%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D +C YK   S A D G+VDIP+ ++  +KA VAT+GP+S+AIDA H SFQFY  G+YY+
Sbjct:    95 DTSCNYKPEYSAAKDTGFVDIPQREKALMKA-VATVGPISVAIDAGHSSFQFYKSGIYYD 153

Query:   117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P+C+S  LDH VLVVGYG +   N +W+VKNSW   WG++GY+KMA+++
Sbjct:   154 PDCSSKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKDQ 202

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:88564 Ctsl "cathepsin L" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 65/112 (58%), Positives = 85/112 (75%)

Query:    57 DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
             D +C+Y+   + A D G+VDIP+ ++  +KA VAT+GP+S+A+DASH S QFYS G+YYE
Sbjct:   208 DGSCKYRAEFAVANDTGFVDIPQQEKALMKA-VATVGPISVAMDASHPSLQFYSSGIYYE 266

Query:   117 PECNSTQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             P C+S  LDH VL+VGYG   TD N N YWLVKNSW + WG EGYIK+A++R
Sbjct:   267 PNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDR 318

GO:0004177 "aminopeptidase activity" evidence=ISO

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=NAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005773 "vacuole" evidence=ISO

GO:0005902 "microvillus" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO;IDA

GO:0007154 "cell communication" evidence=ISO

GO:0008152 "metabolic process" evidence=TAS

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=ISO;TAS

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030141 "secretory granule" evidence=ISO

GO:0030984 "kininogen binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO;NAS

GO:0043005 "neuron projection" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0048863 "stem cell differentiation" evidence=NAS

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95029	CATL_DROME	3, ., 4, ., 2, 2, ., 1, 5	0.5757	0.5751	0.3611	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	2e-64
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	4e-56
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	2e-34
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	2e-17
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	8e-17
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	1e-16
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	1e-16
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-15
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	3e-15
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	2e-14
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	1e-13
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	4e-12
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-10
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	3e-10
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	4e-10
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	5e-09
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-08
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-08
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	4e-08
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	4e-08
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	7e-05
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	2e-04
COG4870	372	COG4870, COG4870, Cysteine protease [Posttranslati	2e-04

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  198 bits (507), Expect = 2e-64
 Identities = 75/166 (45%), Positives = 91/166 (54%), Gaps = 34/166 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
            D AF+YIK N GI TES YPY A                                D  C
Sbjct: 68  PDNAFEYIKKNGGIVTESDYPYTAH-------------------------------DGTC 96

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           ++K++ S     +GY D+P  DE  L+AA+A  GPVS+AIDA    FQ Y  GVY   EC
Sbjct: 97  KFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTEC 156

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
            S +LDHAVL+VGYGT ENG  YW+VKNSW T WG+ GY ++AR  
Sbjct: 157 -SGELDHAVLIVGYGT-ENGVPYWIVKNSWGTDWGENGYFRIARGV 200

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  177 bits (452), Expect = 4e-56
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 34/165 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
            D AF+Y+K N G+ +ES YPY                                  D  C
Sbjct: 68  PDNAFEYVK-NGGLASESDYPYTGK-------------------------------DGTC 95

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y  +K GA   GY ++P GDE  LKAA+A  GPVS+AIDAS  SFQFY  G+Y  P C+
Sbjct: 96  KYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASS-SFQFYKGGIYSGPCCS 154

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +T L+HAVL+VGYGT ENG DYW+VKNSW T+WG++GYI++AR  
Sbjct: 155 NTNLNHAVLLVGYGT-ENGVDYWIVKNSWGTSWGEKGYIRIARGS 198

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  120 bits (304), Expect = 2e-34
 Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 3/71 (4%)

Query: 96  SIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTD-ENGNDYWLVKNSWNTTWG 154
           S+AIDAS   FQFY  G+Y  P C S  LDHAVL+VGYGT+ ENG DYW+VKNSW T WG
Sbjct: 93  SVAIDASD--FQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWG 150

Query: 155 DEGYIKMARNR 165
           + GY ++AR +
Sbjct: 151 ENGYFRIARGK 161

Length = 175

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 45/179 (25%)

Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           AF+ + +  G+ +E  YPY   +S  P      LC +   C ++     + S        
Sbjct: 336 AFEDMIELGGLCSEDDYPY---VSDTP-----ELCNI-DRCKEK---YKIKS-------- 375

Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
                     YV IPE    K K A+  +GP+S++I  S   F FY  G++ + EC   +
Sbjct: 376 ----------YVSIPE---DKFKEAIRFLGPISVSIAVS-DDFAFYKGGIF-DGEC-GEE 419

Query: 124 LDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARNRVYYEPECN 173
            +HAV++VGYG +E  N          Y+++KNSW  +WG++G+I++  +       C+
Sbjct: 420 PNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCS 478

Length = 489

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 78.2 bits (193), Expect = 8e-17
 Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 40/164 (24%)

Query: 2   DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCR 61
           D A +Y+K N G+ + S  PY                                + D  C 
Sbjct: 303 DTALEYVK-NKGLSSSSDVPY-------------------------------LAKDGKCV 330

Query: 62  YKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNS 121
               K   +D     + +G +   K+ V  I P  + I A  +    Y  GVY   EC  
Sbjct: 331 VSSTKKVYID--SYLVAKGKDVLNKSLV--ISPTVVYI-AVSRELLKYKSGVY-NGEC-G 383

Query: 122 TQLDHAVLVVGYGTDEN-GNDYWLVKNSWNTTWGDEGYIKMARN 164
             L+HAVL+VG G DE     YW++KNSW T WG+ GY+++ R 
Sbjct: 384 KSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427

Length = 448

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 21/160 (13%)

Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
            ++Y    HGI  E+  PY+A       F     C     C    N            Y 
Sbjct: 79  VYEYAH-KHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKN------------YT 125

Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
                  D G V    G + K+ A +   GP+S  I A  ++ + Y+ GVY E   +   
Sbjct: 126 LYFVS--DYGSV---SGRD-KMMAEIYARGPISCGIMA-TEALENYTGGVYKEYVQDPL- 177

Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           ++H + V G+G DENG +YW+V+NSW   WG+ G+ ++  
Sbjct: 178 INHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVT 217

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 77.0 bits (189), Expect = 1e-16
 Identities = 54/165 (32%), Positives = 74/165 (44%), Gaps = 35/165 (21%)

Query: 1   MDQAFQYIKDNHG--IDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M QAF+++  N    + TE SYPY +    +P             C   S          
Sbjct: 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPE------------CSNSSELAP------ 234

Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
                    GA   GYV +    E  + A +A  GP+SIA+DAS  SF  Y  GV     
Sbjct: 235 ---------GARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVL--TS 280

Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           C   QL+H VL+VGY        YW++KNSW   WG++GY+++  
Sbjct: 281 CIGEQLNHGVLLVGYNM-TGEVPYWVIKNSWGEDWGEKGYVRVTM 324

Length = 348

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 2   DQAFQYIKDNHGIDTESSYPYEA-----MMSFLPSFLFRRLCYLLTICHKRSNQVTVTSG 56
           D A++Y+    G+ T    PY            P       C     C            
Sbjct: 75  DAAWKYLT-TTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYC--TPKCQD-----GCEKT 126

Query: 57  DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
            +  ++K   + +V     DI           + T GPV  A    ++ F +Y  GVY  
Sbjct: 127 YEEDKHKGKSAYSVPSDETDI--------MKEIMTNGPVQAAFTV-YEDFLYYKSGVYQH 177

Query: 117 PECNSTQLD-HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
                 QL  HAV ++G+G  ENG  YWL  NSW T WG+ GY ++ R
Sbjct: 178 TS--GKQLGGHAVKIIGWGV-ENGVPYWLAANSWGTDWGENGYFRILR 222

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 14/96 (14%)

Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST------------QLDHAV 128
           +E ++K  +   GP+ +A +  +  F FY EGVY+  + +                +HAV
Sbjct: 132 NEDEMKWEIYRNGPIVVAFEV-YSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAV 190

Query: 129 LVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
           L+VG+G DE  G  YW+VKNSW ++WG++GY K+ R
Sbjct: 191 LLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRR 226

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCG 223
           HAV ++G+G  ENG  YWL  NSW T WG+ GY ++ R   N CG
Sbjct: 186 HAVKIIGWGV-ENGVPYWLAANSWGTDWGENGYFRILRG-SNECG 228

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 80  GDEYKLKAAVATIGPVSIAIDASH-----QSFQFYSEGVYYEPECNSTQLDHAVLVVGYG 134
            +   +K A+A  GPV    D        +    Y E VY   E       HAV++VGY 
Sbjct: 123 NNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDL-GGHAVVIVGYD 181

Query: 135 TDE-NGNDYWLVKNSWNTTWGDEGYIKM 161
            +   G   ++VKNSW T WGD GY ++
Sbjct: 182 DNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 168 YEPECNSTQLDHAVLVVGYGTDEN-GNDYWLVKNSWNTTWGDEGYIKMARNRENN--CGV 224
           Y  EC    L+HAVL+VG G DE     YW++KNSW T WG+ GY+++ R  E    CG+
Sbjct: 378 YNGEC-GKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGI 436

Query: 225 AS 226
            +
Sbjct: 437 LT 438

Length = 448

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEG 210
            +       +    VY   E       HAV++VGY  +   G   ++VKNSW T WGD G
Sbjct: 147 GFDRLKEGIIYEEIVYLLYEDGDL-GGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNG 205

Query: 211 YIKM 214
           Y ++
Sbjct: 206 YGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 24/109 (22%)

Query: 93  GPVSIAIDASHQSFQFYSEGVYYEPECNSTQ--------------------LDHAVLVVG 132
           GP+  + +AS   F  Y++GVYY  +    +                    ++HA+++VG
Sbjct: 568 GPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVG 626

Query: 133 YG-TDENGN--DYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLD 178
           +G  + NG    YW+ +NSW   WG EGY K+ R + +   E  S  ++
Sbjct: 627 WGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE 675

Length = 693

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 166 VYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 216
           VY E   +   ++H + V G+G DENG +YW+V+NSW   WG+ G+ ++  
Sbjct: 168 VYKEYVQDPL-INHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVT 217

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 55.1 bits (132), Expect = 5e-09
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 109 YSEGVYYEPEC-NSTQLDHAVLVVGYGTDENGNDY---WLVKNSWNTTWGDEGYIKMARN 164
           Y  G    PEC NS++L     + GY + E+       WL KN   +   D        +
Sbjct: 216 YVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHS 275

Query: 165 RVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 216
            V     C   QL+H VL+VGY        YW++KNSW   WG++GY+++  
Sbjct: 276 GVL--TSCIGEQLNHGVLLVGYNM-TGEVPYWVIKNSWGEDWGEKGYVRVTM 324

Length = 348

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 164 NRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRENN 221
            R Y+     ++ ++H VL++G+GTDENG DYWLV + W +  +W D G  K+AR   N 
Sbjct: 394 LRHYF-----ASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV-NA 447

Query: 222 CGVASS 227
             + S 
Sbjct: 448 YNIESE 453

Length = 548

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRVYYEPE 171
           ++H VL++G+GTDENG DYWLV + W +  +W D G  K+AR    Y  E
Sbjct: 402 VNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIE 451

Length = 548

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 119 CNSTQLDHAVLVVGYGTDENGND----YWLVKNSWNTTWGDEGYIKM 161
           C     DHAV +VGYG   N  D    YW+V+NSW   WGDEGY K+
Sbjct: 716 CGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKV 762

Length = 1004

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 172 CNSTQLDHAVLVVGYGTDENGND----YWLVKNSWNTTWGDEGYIKM 214
           C     DHAV +VGYG   N  D    YW+V+NSW   WGDEGY K+
Sbjct: 716 CGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKV 762

Length = 1004

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 1  MDQAFQYIKDNHGIDTESSYPYEA 24
           D AF+YIK N G++TES YPY  
Sbjct: 69 PDNAFEYIKKNGGLETESCYPYTG 92

Length = 175

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 13/44 (29%)

Query: 126 HAVLVVGYGTDEN-----------GNDYWLVKNSWNTTWGDEGY 158
           HAVL+VGY  D++           G+  +++KNSW T WG+ GY
Sbjct: 266 HAVLIVGY--DDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGY 307

Length = 372

>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 13/44 (29%)

Query: 179 HAVLVVGYGTDEN-----------GNDYWLVKNSWNTTWGDEGY 211
           HAVL+VGY  D++           G+  +++KNSW T WG+ GY
Sbjct: 266 HAVLIVGY--DDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGY 307

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG1542|consensus	372		100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
PTZ00021	489	falcipain-2; Provisional	100.0
KOG1543|consensus	325		100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
KOG1544|consensus	470		99.95
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.94
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.93
smart00645	174	Pept_C1 Papain family cysteine protease.	99.9
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.45
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.3
COG4870	372	Cysteine protease [Posttranslational modification,	99.3
PTZ00203	348	cathepsin L protease; Provisional	99.21
PTZ00049	693	cathepsin C-like protein; Provisional	99.17
smart00645	174	Pept_C1 Papain family cysteine protease.	98.75
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	98.74
KOG1542|consensus	372		98.73
KOG1543|consensus	325		98.68
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	98.62
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	98.62
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	98.6
PTZ00462	1004	Serine-repeat antigen protein; Provisional	98.3
PTZ00200	448	cysteine proteinase; Provisional	98.28
PTZ00021	489	falcipain-2; Provisional	98.26
PF00112	219	Peptidase_C1: Papain family cysteine protease This	98.23
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.23
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.13
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	97.92
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	97.52
KOG1544|consensus	470		97.32
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	96.59
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	95.54
COG4870	372	Cysteine protease [Posttranslational modification,	92.95
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	91.1
PF09778	212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	85.93
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	83.23

>KOG1542|consensus

Probab=100.00  E-value=6.1e-38  Score=267.56  Aligned_cols=146  Identities=39%  Similarity=0.806  Sum_probs=123.0

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      ++.||+|+++..||.+|++|||++.+                              ...|...+...++.|.+|..|+. 
T Consensus       224 ~~nA~~~~~~~gGL~~E~dYPY~g~~------------------------------~~~C~~~~~~~~v~I~~f~~l~~-  272 (372)
T KOG1542|consen  224 MDNAFKYIKKAGGLEKEKDYPYTGKK------------------------------GNQCHFDKSKIVVSIKDFSMLSN-  272 (372)
T ss_pred             hhHHHHHHHHhCCccccccCCccccC------------------------------CCccccchhhceEEEeccEecCC-
Confidence            56899997777899999999999982                              33899988888999999999965 


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeC--CCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE--PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY  158 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~--~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~  158 (233)
                      +|++|++.|.++|||+|+|++  ..++.|++||..+  ..|++..++|+|+|||||.                       
T Consensus       273 nE~~ia~wLv~~GPi~vgiNa--~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~-----------------------  327 (372)
T KOG1542|consen  273 NEDQIAAWLVTFGPLSVGINA--KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGS-----------------------  327 (372)
T ss_pred             CHHHHHHHHHhcCCeEEEEch--HHHHHhcccccCCCcccCCccccCceEEEEeecC-----------------------
Confidence            999999999999999999998  4799999999976  4576544555555555554                       


Q ss_pred             ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                    +....||||||||||++|||+||+|+.||. |.|||++.++-+.+
T Consensus       328 ------------------------------~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~-N~CGi~~mvss~~v  371 (372)
T KOG1542|consen  328 ------------------------------SGYEKPYWIVKNSWGTSWGEKGYYKLCRGS-NACGIADMVSSAAV  371 (372)
T ss_pred             ------------------------------CCCCCceEEEECCccccccccceEEEeccc-cccccccchhhhhc
Confidence                                          334688999999999999999999999997 99999998876653

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=1.3e-34  Score=244.49  Aligned_cols=157  Identities=27%  Similarity=0.562  Sum_probs=116.4

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++ ++|+++|++|||+..++.         |...+.|.+|..       ...|...+....+++.+|..++  +
T Consensus        77 ~~a~~~~~-~~Gl~~e~~yPY~~~~~~---------C~~~~~~~~c~~-------~~~c~~~~~~~~~~i~~~~~~~--~  137 (239)
T cd02698          77 GGVYEYAH-KHGIPDETCNPYQAKDGE---------CNPFNRCGTCNP-------FGECFAIKNYTLYFVSDYGSVS--G  137 (239)
T ss_pred             HHHHHHHH-HcCcCCCCeeCCcCCCCC---------CcCCCCCCCccc-------CcccccccccceEEeeeceecC--C
Confidence            57999996 579999999999876322         222223322221       2455544444557888888774  6


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++ .++|+.|++|||....|. ...+|+|+|||||+                          
T Consensus       138 ~~~i~~~l~~~GPV~v~i~~-~~~f~~Y~~GIy~~~~~~-~~~~HaV~IVGyG~--------------------------  189 (239)
T cd02698         138 RDKMMAEIYARGPISCGIMA-TEALENYTGGVYKEYVQD-PLINHIISVAGWGV--------------------------  189 (239)
T ss_pred             HHHHHHHHHHcCCEEEEEEe-cccccccCCeEEccCCCC-CcCCeEEEEEEEEe--------------------------
Confidence            88999999999999999999 469999999999865553 34556666666654                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC----CCcccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR----ENNCGVASSASFPL  232 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~----~~~cgi~~~~~~~~  232 (233)
                                                 +.++.+|||||||||++|||+|||||+|+.    .|+||||+++.|+.
T Consensus       190 ---------------------------~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~  237 (239)
T cd02698         190 ---------------------------DENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD  237 (239)
T ss_pred             ---------------------------cCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence                                       333567888888889999999999999983    17999999998864

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=1.5e-34  Score=262.86  Aligned_cols=152  Identities=33%  Similarity=0.708  Sum_probs=118.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++++||++|++|||++.+                              ++.|........+++.+|..++   
T Consensus       334 ~~Af~yi~~~gGl~tE~~YPY~~~~------------------------------~~~C~~~~~~~~~~i~~y~~i~---  380 (489)
T PTZ00021        334 PNAFEDMIELGGLCSEDDYPYVSDT------------------------------PELCNIDRCKEKYKIKSYVSIP---  380 (489)
T ss_pred             HhhhhhhhhccccCcccccCccCCC------------------------------CCccccccccccceeeeEEEec---
Confidence            5799999777799999999998761                              2445544344557888998885   


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++|+++|+++|||+|+|++. ++|++|++|||.+ .|.. ..+|||+|||||+ +++.+...                 
T Consensus       381 ~~~lk~al~~~GPVsv~i~a~-~~f~~YkgGIy~~-~C~~-~~nHAVlIVGYG~-e~~~~~~~-----------------  439 (489)
T PTZ00021        381 EDKFKEAIRFLGPISVSIAVS-DDFAFYKGGIFDG-ECGE-EPNHAVILVGYGM-EEIYNSDT-----------------  439 (489)
T ss_pred             HHHHHHHHHhcCCeEEEEEee-cccccCCCCcCCC-CCCC-ccceEEEEEEecC-cCCccccc-----------------
Confidence            578999999999999999994 6899999999974 6864 4788888888886 21111000                 


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~  233 (233)
                                                ....+.+|||||||||++|||+|||||+|+.+   |.|||++.+.||++
T Consensus       440 --------------------------~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~  488 (489)
T PTZ00021        440 --------------------------KKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI  488 (489)
T ss_pred             --------------------------ccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence                                      00124689999999999999999999999863   58999999999985

>KOG1543|consensus

Probab=100.00  E-value=5.7e-34  Score=249.67  Aligned_cols=143  Identities=47%  Similarity=0.908  Sum_probs=118.4

Q ss_pred             ChhHHHHHHhCCCcCC-CCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCC
Q psy403            1 MDQAFQYIKDNHGIDT-ESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPE   79 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~-e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~   79 (233)
                      |..||+|++++ |+++ +++|||.+.                               ...|........+.+.+++.++.
T Consensus       179 ~~~A~~yi~~~-G~~t~~~~Ypy~~~-------------------------------~~~C~~~~~~~~~~~~~~~~~~~  226 (325)
T KOG1543|consen  179 PKNAFKYIKKN-GGVTECENYPYIGK-------------------------------DGTCKSNKKDKTVTIKGFYNVPA  226 (325)
T ss_pred             HHHHHHHHHHh-CCCCCCcCCCCcCC-------------------------------CCCccCCCccceeEeeeeeecCc
Confidence            46899999755 7777 999999988                               55777766667788889998876


Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                       +|++||.+|+++|||+|+|++. .+|+.|++|||.++.|.....                                   
T Consensus       227 -~e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy~~~~~~~~~~-----------------------------------  269 (325)
T KOG1543|consen  227 -NEEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVYAEEKGDDKEG-----------------------------------  269 (325)
T ss_pred             -CHHHHHHHHHhcCCeEEEEeeh-hhhhhccCceEeCCCCCCCCC-----------------------------------
Confidence             5999999999999999999995 599999999999877753234                                   


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccc-cc
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF-PL  232 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~-~~  232 (233)
                                        +|||+|||||+ .++.+|||||||||++|||+|||||.|++ +.|+|++.++| |+
T Consensus       270 ------------------~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~-~~~~I~~~~~~~p~  323 (325)
T KOG1543|consen  270 ------------------DHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGV-NKCGIASEASYGPI  323 (325)
T ss_pred             ------------------CceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCC-CchhhhcccccCCC
Confidence                              45555555555 45678888888889999999999999998 89999999999 65

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=4.9e-34  Score=265.33  Aligned_cols=190  Identities=25%  Similarity=0.469  Sum_probs=121.6

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhh-hhhhhhhcccCCcccc-ccCC------CCCcCCCCCcceEec
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRL-CYLLTICHKRSNQVTV-TSGD------DNCRYKRAKSGAVDR   72 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~-c~~~~~C~~~~~~~~~-~~~~------~~C~~~~~~~~~~i~   72 (233)
                      +..||+|++ ++||++|+||||++..+.+|....... +.....+....+++.+ +.+.      ..|.......++.++
T Consensus       462 ~~~A~kya~-~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k  540 (693)
T PTZ00049        462 PYLVSKMAK-LQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAK  540 (693)
T ss_pred             HHHHHHHHH-HCCCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeee
Confidence            357999996 569999999999976433321100000 0000000000000000 0001      112222333445566


Q ss_pred             eEEEcC-------CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCC------CCCCCCCCeeEEEeeeeecCCC
Q psy403           73 GYVDIP-------EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP------ECNSTQLDHAVLVVGYGTDENG  139 (233)
Q Consensus        73 ~~~~~~-------~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~------~c~~~~~~Hav~ivGyg~~~~~  139 (233)
                      +|..+.       ..++++||++|+++|||+|+|++ .++|++|++|||...      .|......|.            
T Consensus       541 ~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda-~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~------------  607 (693)
T PTZ00049        541 DYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEA-SPDFYDYADGVYYVEDFPHARRCTVDLPKHN------------  607 (693)
T ss_pred             eeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEe-chhhhcCCCccccCcccccccccCCcccccc------------
Confidence            665542       24799999999999999999999 468999999999853      3642211110            


Q ss_pred             CceeEEeecCCccccccccceeccCCccccCCCccccccceeEEEEeecCC-CC--cceEEEeccCCCCCCCCceEEEEe
Q psy403          140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NG--NDYWLVKNSWNTTWGDEGYIKMAR  216 (233)
Q Consensus       140 ~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~--~~yWiv~nswg~~WG~~Gy~~i~r  216 (233)
                       ..| .-++|                         +.+||||+|||||++. ++  .+|||||||||++|||+|||||+|
T Consensus       608 -~~~-~~~G~-------------------------e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~R  660 (693)
T PTZ00049        608 -GVY-NITGW-------------------------EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIR  660 (693)
T ss_pred             -ccc-ccccc-------------------------ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEc
Confidence             000 01233                         5689999999999864 45  489999999999999999999999


Q ss_pred             cCCCcccccccccccc
Q psy403          217 NRENNCGVASSASFPL  232 (233)
Q Consensus       217 ~~~~~cgi~~~~~~~~  232 (233)
                      +. |+|||++++.|++
T Consensus       661 G~-N~CGIEs~a~~~~  675 (693)
T PTZ00049        661 GK-NFSGIESQSLFIE  675 (693)
T ss_pred             CC-CccCCccceeEEe
Confidence            97 9999999998864

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=2e-33  Score=232.07  Aligned_cols=142  Identities=59%  Similarity=1.124  Sum_probs=118.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||++++ ++|+++|++|||...                               ...|........+++.+|..++..+
T Consensus        69 ~~a~~~~~-~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~i~~~~  116 (210)
T cd02248          69 DNAFEYVK-NGGLASESDYPYTGK-------------------------------DGTCKYNSSKVGAKITGYSNVPPGD  116 (210)
T ss_pred             HHhHHHHH-HCCcCccccCCccCC-------------------------------CCCccCCCCcccEEEeeEEEcCCCc
Confidence            46899885 679999999999876                               4456554446678999999997767


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|.+ .++|+.|++|||..+.|.....+|||+||||++ +                        
T Consensus       117 ~~~ik~~l~~~gPV~~~~~~-~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~-~------------------------  170 (210)
T cd02248         117 EEALKAALANYGPVSVAIDA-SSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGT-E------------------------  170 (210)
T ss_pred             HHHHHHHHhhcCCEEEEEec-CcccccCCCCceeCCCCCCCcCCEEEEEEEEee-c------------------------
Confidence            99999999999999999998 579999999999877665455678888888876 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP  231 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~  231 (233)
                                                   .+.+|||||||||++||++||+||.++. +.|||+..+.||
T Consensus       171 -----------------------------~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-~~cgi~~~~~~~  210 (210)
T cd02248         171 -----------------------------NGVDYWIVKNSWGTSWGEKGYIRIARGS-NLCGIASYASYP  210 (210)
T ss_pred             -----------------------------CCceEEEEEcCCCCccccCcEEEEEcCC-CccCceeeeecC
Confidence                                         2456777777779999999999999996 899999998886

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=1.2e-33  Score=239.06  Aligned_cols=150  Identities=34%  Similarity=0.650  Sum_probs=109.9

Q ss_pred             hhHHHHHHhCCCcCCCCCCcccc-ccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEc--
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEA-MMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDI--   77 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~-~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~--   77 (233)
                      ..|++|++ ++|+++|++|||+. .                               ...|.... ....+++..|..+  
T Consensus        79 ~~a~~~~~-~~Gi~~e~~yPY~~~~-------------------------------~~~C~~~~~~~~~~~~~~~~~i~~  126 (243)
T cd02621          79 FLVGKFAE-DFGIVTEDYFPYTADD-------------------------------DRPCKASPSECRRYYFSDYNYVGG  126 (243)
T ss_pred             HHHHHHHH-hcCcCCCceeCCCCCC-------------------------------CCCCCCCccccccccccceeEccc
Confidence            46899996 67999999999987 3                               22333221 1122233333332  


Q ss_pred             --CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCC----CCCCCCCeeEEEeeeeecCCCCceeEEeecCCc
Q psy403           78 --PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE----CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT  151 (233)
Q Consensus        78 --~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~----c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~  151 (233)
                        ...++++||++|+++|||+++|++ .++|++|++|||....    |.....                           
T Consensus       127 ~~~~~~~~~ik~~i~~~GPv~v~~~~-~~~F~~Y~~GIy~~~~~~~~C~~~~~---------------------------  178 (243)
T cd02621         127 CYGCTNEDEMKWEIYRNGPIVVAFEV-YSDFDFYKEGVYHHTDNDEVSDGDND---------------------------  178 (243)
T ss_pred             ccccCCHHHHHHHHHHcCCEEEEEEe-cccccccCCeEECcCCcccccccccc---------------------------
Confidence              124889999999999999999999 5799999999998653    642100                           


Q ss_pred             cccccccceeccCCccccCCCccccccceeEEEEeecCC-CCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccc
Q psy403          152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF  230 (233)
Q Consensus       152 ~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~  230 (233)
                                        ..++...++|||+|||||++. ++.+|||||||||++|||+|||||+|+. |+|||++.+.+
T Consensus       179 ------------------~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-~~cgi~~~~~~  239 (243)
T cd02621         179 ------------------NFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-NECGIESQAVF  239 (243)
T ss_pred             ------------------cccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-cccCcccceEe
Confidence                              001123457888888888765 4789999999999999999999999997 99999999865

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=3.3e-33  Score=235.49  Aligned_cols=155  Identities=30%  Similarity=0.627  Sum_probs=110.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCC-CchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC----CCcceEeceEEE
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSF-LPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR----AKSGAVDRGYVD   76 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~-~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~----~~~~~~i~~~~~   76 (233)
                      ..||+|++ ++|+++|++|||...++. .|+..  ..|.....|            ...|....    ....+++..+..
T Consensus        75 ~~a~~~i~-~~G~~~e~~yPY~~~~~~~~~~~~--~~~~~~~~~------------~~~C~~~~~~~~~~~~~~~~~~~~  139 (236)
T cd02620          75 DAAWKYLT-TTGVVTGGCQPYTIPPCGHHPEGP--PPCCGTPYC------------TPKCQDGCEKTYEEDKHKGKSAYS  139 (236)
T ss_pred             HHHHHHHH-hcCCCcCCEecCcCCCCccCCCCC--CCCCCCCCC------------CCCCCcCCccccceeeeeecceee
Confidence            57999997 569999999999976321 11100  111111111            33454332    122356667777


Q ss_pred             cCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccc
Q psy403           77 IPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDE  156 (233)
Q Consensus        77 ~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~  156 (233)
                      +. .++++||++|+++|||+++|++ .++|+.|++|||... |.....+|||+|||||+                     
T Consensus       140 ~~-~~~~~ik~~l~~~GPv~v~i~~-~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVGyg~---------------------  195 (236)
T cd02620         140 VP-SDETDIMKEIMTNGPVQAAFTV-YEDFLYYKSGVYQHT-SGKQLGGHAVKIIGWGV---------------------  195 (236)
T ss_pred             eC-CHHHHHHHHHHHCCCeEEEEEe-chhhhhcCCcEEeec-CCCCcCCeEEEEEEEec---------------------
Confidence            75 4789999999999999999999 579999999999743 43334456666666665                     


Q ss_pred             ccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403          157 GYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       157 G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                                      + ++.+|||||||||++|||+|||||+|+. |.|||++++.
T Consensus       196 --------------------------------~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~-~~cgi~~~~~  234 (236)
T cd02620         196 --------------------------------E-NGVPYWLAANSWGTDWGENGYFRILRGS-NECGIESEVV  234 (236)
T ss_pred             --------------------------------c-CCeeEEEEEeCCCCCCCCCcEEEEEccC-ccccccccee
Confidence                                            2 4567888888889999999999999997 8999999875

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=5.6e-33  Score=245.17  Aligned_cols=143  Identities=36%  Similarity=0.638  Sum_probs=108.5

Q ss_pred             hhHHHHHHhC--CCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCC-CcceEeceEEEcC
Q psy403            2 DQAFQYIKDN--HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRA-KSGAVDRGYVDIP   78 (233)
Q Consensus         2 ~~a~~y~~~~--~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~-~~~~~i~~~~~~~   78 (233)
                      ..||+|++++  +|+++|++|||++.++.                            ...|..... ...+++.+|..++
T Consensus       194 ~~a~~yi~~~~~ggi~~e~~YPY~~~~~~----------------------------~~~C~~~~~~~~~~~i~~~~~i~  245 (348)
T PTZ00203        194 LQAFEWVLRNMNGTVFTEKSYPYVSGNGD----------------------------VPECSNSSELAPGARIDGYVSME  245 (348)
T ss_pred             HHHHHHHHHhcCCCCCccccCCCccCCCC----------------------------CCcCCCCcccccceEecceeecC
Confidence            5799999753  46899999999987321                            113432221 2346788898886


Q ss_pred             CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403           79 EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY  158 (233)
Q Consensus        79 ~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~  158 (233)
                      . ++++|+++|+++|||+++|++  .+|++|++|||.  .|.....+|+|+|||||.                       
T Consensus       246 ~-~e~~~~~~l~~~GPv~v~i~a--~~f~~Y~~GIy~--~c~~~~~nHaVliVGYG~-----------------------  297 (348)
T PTZ00203        246 S-SERVMAAWLAKNGPISIAVDA--SSFMSYHSGVLT--SCIGEQLNHGVLLVGYNM-----------------------  297 (348)
T ss_pred             c-CHHHHHHHHHhCCCEEEEEEh--hhhcCccCceee--ccCCCCCCeEEEEEEEec-----------------------
Confidence            5 889999999999999999998  389999999996  375444566666666654                       


Q ss_pred             ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL  232 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~  232 (233)
                                                    + ++.+|||||||||++|||+|||||+|+. |.|||++.+...+
T Consensus       298 ------------------------------~-~g~~YWiikNSWG~~WGe~GY~ri~rg~-n~Cgi~~~~~~~~  339 (348)
T PTZ00203        298 ------------------------------T-GEVPYWVIKNSWGEDWGEKGYVRVTMGV-NACLLTGYPVSVH  339 (348)
T ss_pred             ------------------------------C-CCceEEEEEcCCCCCcCcCceEEEEcCC-CcccccceEEEEe
Confidence                                          2 3567888888889999999999999996 9999997766543

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=5.4e-33  Score=251.60  Aligned_cols=142  Identities=33%  Similarity=0.704  Sum_probs=106.8

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|++ ++||++|++|||++.                               ++.|.... ...+.+.+|..++  
T Consensus       302 ~~~A~~yi~-~~Gi~~e~~YPY~~~-------------------------------~~~C~~~~-~~~~~i~~y~~~~--  346 (448)
T PTZ00200        302 PDTALEYVK-NKGLSSSSDVPYLAK-------------------------------DGKCVVSS-TKKVYIDSYLVAK--  346 (448)
T ss_pred             HHHHHHHHh-hcCccccccCCCCCC-------------------------------CCCCcCCC-CCeeEecceEecC--
Confidence            357999996 569999999999987                               45565433 2335678887653  


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ..+.|+ ++..+|||+|+|++ ..+|+.|++|||.+ .|.. ..+|||+|||||.+                        
T Consensus       347 ~~~~l~-~~l~~GPV~v~i~~-~~~f~~Yk~GIy~~-~C~~-~~nHaV~lVGyG~d------------------------  398 (448)
T PTZ00200        347 GKDVLN-KSLVISPTVVYIAV-SRELLKYKSGVYNG-ECGK-SLNHAVLLVGEGYD------------------------  398 (448)
T ss_pred             HHHHHH-HHHhcCCEEEEeec-ccccccCCCCcccc-ccCC-CCcEEEEEEEeccc------------------------
Confidence            344444 44567999999998 47899999999974 5753 35666666666531                        


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC--CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR--ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~--~~~cgi~~~~~~~~~  233 (233)
                                                  +.++.+|||||||||++|||+|||||+|+.  .|.|||++.+.||++
T Consensus       399 ----------------------------~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        399 ----------------------------EKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             ----------------------------CCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence                                        124678888888889999999999999963  489999999999975

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=1e-32  Score=253.54  Aligned_cols=162  Identities=28%  Similarity=0.490  Sum_probs=113.2

Q ss_pred             ChhHHHHHHhCCCcCCCCCC--ccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc------eEec
Q psy403            1 MDQAFQYIKDNHGIDTESSY--PYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG------AVDR   72 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~y--PY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~------~~i~   72 (233)
                      +..||+|++ ++||++|++|  ||++.++.                            ...|+.......      ..+.
T Consensus       284 p~~A~~yi~-~~GI~tE~dY~~PY~~~dg~----------------------------~~~Ck~~~~~~~y~~~~~~~I~  334 (548)
T PTZ00364        284 PEEVGKFAE-TFGILTTDSYYIPYDSGDGV----------------------------ERACKTRRPSRRYYFTNYGPLG  334 (548)
T ss_pred             HHHHHHHHH-hCCcccccccCCCCCCCCCC----------------------------CCCCCCCcccceeeeeeeEEec
Confidence            457999996 5799999999  99876321                            112433222222      3445


Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc
Q psy403           73 GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT  152 (233)
Q Consensus        73 ~~~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~  152 (233)
                      +|+.+. .++++||++|+++|||+|+|++ ..+|+.|++|||....-....        ++..  ...+..         
T Consensus       335 gyy~~~-~~e~~I~~eI~~~GPVsVaIda-~~df~~YksGiy~gi~~~~~~--------~~~~--~~~~~~---------  393 (548)
T PTZ00364        335 GYYGAV-TDPDEIIWEIYRHGPVPASVYA-NSDWYNCDENSTEDVRYVSLD--------DYST--ASADRP---------  393 (548)
T ss_pred             ceeecC-CcHHHHHHHHHHcCCeEEEEEe-chHHHhcCCCCccCeeccccc--------cccc--cccCCc---------
Confidence            555554 4789999999999999999999 468999999998521000000        0000  000000         


Q ss_pred             ccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCC--CCCCCceEEEEecCCCccccccccc
Q psy403          153 WGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       153 wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~--~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                      ...|..+.+||||+|||||+++++.+|||||||||+  +|||+|||||+||. |+||||++++
T Consensus       394 ----------------~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~-N~CGIes~~v  455 (548)
T PTZ00364        394 ----------------LRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV-NAYNIESEVV  455 (548)
T ss_pred             ----------------ccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCC-Ccccccceee
Confidence                            001122457999999999987788999999999999  99999999999997 9999999876

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=8.2e-33  Score=228.94  Aligned_cols=147  Identities=42%  Similarity=0.861  Sum_probs=118.6

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCc-ceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKS-GAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~-~~~i~~~~~~~~~   80 (233)
                      .+||+|+++++|+++|++|||....                              ...|....... ..++..|..+...
T Consensus        72 ~~a~~~~~~~~Gi~~e~~~pY~~~~------------------------------~~~c~~~~~~~~~~~i~~~~~~~~~  121 (219)
T PF00112_consen   72 FDALKYIKNNNGIVTEEDYPYNGNE------------------------------NPTCKSKKSNSYYVKIKGYGKVKDN  121 (219)
T ss_dssp             HHHHHHHHHHTSBEBTTTS--SSSS------------------------------SCSSCHSGGGEEEBEESEEEEEEST
T ss_pred             cccceeecccCcccccccccccccc------------------------------ccccccccccccccccccccccccc
Confidence            5799999864799999999999761                              14565443332 4788999988776


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+++|.+..++|+.|++|||..+.|.....+|+|+||||++ +.                      
T Consensus       122 ~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~~-~~----------------------  178 (219)
T PF00112_consen  122 DIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYDD-EN----------------------  178 (219)
T ss_dssp             CHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEEE-ET----------------------
T ss_pred             chhHHHHHHhhCceeeeeeeccccccccccceeeecccccccccccccccccccc-cc----------------------
Confidence            8999999999999999999995436999999999988787677889999999988 22                      


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL  232 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~  232 (233)
                                                     +..|||||||||++||++||+||.|+.+++|||+++++||+
T Consensus       179 -------------------------------~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  179 -------------------------------GKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             -------------------------------TEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             -------------------------------ceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence                                           35667777777999999999999999744999999999996

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>KOG1544|consensus

Probab=99.95  E-value=8.2e-29  Score=209.73  Aligned_cols=169  Identities=21%  Similarity=0.494  Sum_probs=116.2

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC--CCcceEeceEEEcC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR--AKSGAVDRGYVDIP   78 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~--~~~~~~i~~~~~~~   78 (233)
                      ++.||.||. +.|+|...||||...+...|+     -|.+.++-..+.+..    ....|....  +...++...-+++ 
T Consensus       281 lDRAWWYlR-KrGvVsdhCYP~~~dQ~~~~~-----~C~m~sR~~grgkRq----at~~CPn~~~~Sn~iyq~tPPYrV-  349 (470)
T KOG1544|consen  281 LDRAWWYLR-KRGVVSDHCYPFSGDQAGPAP-----PCMMHSRAMGRGKRQ----ATAHCPNSYVNSNDIYQVTPPYRV-  349 (470)
T ss_pred             ccchheeee-cccccccccccccCCCCCCCC-----CceeeccccCccccc----ccCcCCCcccccCceeeecCCeec-
Confidence            478999995 679999999999876433221     233333322221111    022355332  3455777777777 


Q ss_pred             CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403           79 EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY  158 (233)
Q Consensus        79 ~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~  158 (233)
                      ..+|++||++||++|||.+.|.+ +++|++|++|||.+.+-.....               ..                 
T Consensus       350 SSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~H~~~~~~~~---------------e~-----------------  396 (470)
T KOG1544|consen  350 SSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSHTPVSLGRP---------------ER-----------------  396 (470)
T ss_pred             cCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceeeccccccCCc---------------hh-----------------
Confidence            45999999999999999999988 8999999999998765332110               00                 


Q ss_pred             ceeccCCccccCCCccccccceeEEEEeecCC----CCcceEEEeccCCCCCCCCceEEEEecCCCcccccccc
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDE----NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA  228 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~----~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~  228 (233)
                                    ....-.|+|.|.|||++.    ...+|||..||||+.|||+|||||.||+ |+|-||++.
T Consensus       397 --------------yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv-NecdIEsfv  455 (470)
T KOG1544|consen  397 --------------YRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV-NECDIESFV  455 (470)
T ss_pred             --------------hhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc-cchhhhHhh
Confidence                          001223555555555433    2458999999999999999999999998 999999875

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.94  E-value=2.3e-26  Score=219.95  Aligned_cols=165  Identities=25%  Similarity=0.414  Sum_probs=103.7

Q ss_pred             hHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCC-CCCcCC-CCCcceEeceEEEcCCC
Q psy403            3 QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGD-DNCRYK-RAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         3 ~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~-~~C~~~-~~~~~~~i~~~~~~~~~   80 (233)
                      .+++|++++.||++|++|||....             ....|+.....+...... ..+... .....+.+.+|..+...
T Consensus       604 efl~yI~e~GgLptESdYPYt~k~-------------~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~  670 (1004)
T PTZ00462        604 EFLQIIEDNGFLPADSNYLYNYTK-------------VGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESE  670 (1004)
T ss_pred             HHHHHHHHcCCCcccccCCCccCC-------------CCCCCCCCcccccccccccccccccccccceeeccceEEeccc
Confidence            456888766578999999998630             001122111000000000 000000 11122445566655321


Q ss_pred             ----c----HHHHHHHHHhcCCeEEEEeccCcccccc-ccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCc
Q psy403           81 ----D----EYKLKAAVATIGPVSIAIDASHQSFQFY-SEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT  151 (233)
Q Consensus        81 ----~----~~~i~~~i~~~GPv~v~~~~~~~~f~~Y-~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~  151 (233)
                          +    ++.||++|+++|||+|+|++.  +|+.| .+|||....|.....+|||+|||||...+             
T Consensus       671 ~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in-------------  735 (1004)
T PTZ00462        671 HFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYIN-------------  735 (1004)
T ss_pred             ccccchhhHHHHHHHHHHhcCCEEEEEEee--hHHhhhcCCccccCCCCCCcCCceEEEEEeccccc-------------
Confidence                1    468999999999999999983  68888 48998777786545567777777765100             


Q ss_pred             cccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEe-cCCCcccccccccc
Q psy403          152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR-NRENNCGVASSASF  230 (233)
Q Consensus       152 ~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r-~~~~~cgi~~~~~~  230 (233)
                                                          .+..+.+|||||||||+.||++|||||+| +. +.|||.....+
T Consensus       736 ------------------------------------~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~-n~CGin~i~t~  778 (1004)
T PTZ00462        736 ------------------------------------DEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP-SHCEDNFIHSV  778 (1004)
T ss_pred             ------------------------------------ccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC-CCCccchheee
Confidence                                                00125689999999999999999999998 55 89999877666


Q ss_pred             cc
Q psy403          231 PL  232 (233)
Q Consensus       231 ~~  232 (233)
                      |+
T Consensus       779 ~~  780 (1004)
T PTZ00462        779 VI  780 (1004)
T ss_pred             ee
Confidence            65

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.93  E-value=3.1e-25  Score=183.82  Aligned_cols=140  Identities=27%  Similarity=0.445  Sum_probs=99.6

Q ss_pred             hhHHH-HHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            2 DQAFQ-YIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~-y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      ..|+. +++ ++|+++|++|||...+..               |            ...|........+++..|..+...
T Consensus        72 ~~~~~~~~~-~~Gi~~e~~~Py~~~~~~---------------~------------~~~~~~~~~~~~~~~~~y~~~~~~  123 (223)
T cd02619          72 LSALLKLVA-LKGIPPEEDYPYGAESDG---------------E------------EPKSEAALNAAKVKLKDYRRVLKN  123 (223)
T ss_pred             HHHHHHHHH-HcCCCccccCCCCCCCCC---------------C------------CCCCccchhhcceeecceeEeCch
Confidence            35676 774 679999999999987211               1            011111233455788999888776


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEe-----CCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccc
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGD  155 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~-----~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~  155 (233)
                      ++++||++|+++|||+++|.+ .+.|..|++|++.     ...+.....+|||+||||++                    
T Consensus       124 ~~~~ik~aL~~~gPv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~--------------------  182 (223)
T cd02619         124 NIEDIKEALAKGGPVVAGFDV-YSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDD--------------------  182 (223)
T ss_pred             hHHHHHHHHHHCCCEEEEEEc-ccchhcccCccccccccccccCCCccCCeEEEEEeecC--------------------
Confidence            799999999999999999998 5789999999873     22233334556666666655                    


Q ss_pred             cccceeccCCccccCCCccccccceeEEEEeecCC-CCcceEEEeccCCCCCCCCceEEEEecCCCccccc
Q psy403          156 EGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVA  225 (233)
Q Consensus       156 ~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~  225 (233)
                                                       +. .+..|||||||||++||++||+||.++  +.+.+.
T Consensus       183 ---------------------------------~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~--~~~~~~  218 (223)
T cd02619         183 ---------------------------------NYVEGKGAFIVKNSWGTDWGDNGYGRISYE--DVYEMT  218 (223)
T ss_pred             ---------------------------------CCCCCCCEEEEEeCCCCccccCCEEEEehh--hhhhhh
Confidence                                             22 256788888888999999999999997  355443

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.90  E-value=1.5e-23  Score=169.02  Aligned_cols=78  Identities=60%  Similarity=1.262  Sum_probs=57.9

Q ss_pred             EEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403           96 SIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus        96 ~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      ++.+.+  .+|+.|++|||+...|.....+|+|+|||||.                                        
T Consensus        93 ~~~~~~--~~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~----------------------------------------  130 (174)
T smart00645       93 SVAIDA--SDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGT----------------------------------------  130 (174)
T ss_pred             EEEEEc--ccccCCcCeEECCCCCCCCcccEEEEEEEEee----------------------------------------
Confidence            455555  36999999999876675434566666666654                                        


Q ss_pred             cccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccc
Q psy403          176 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA  228 (233)
Q Consensus       176 ~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~  228 (233)
                                   +.++.+|||||||||+.||++|||||.|+..|+|||+...
T Consensus       131 -------------~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~  170 (174)
T smart00645      131 -------------EENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV  170 (174)
T ss_pred             -------------cCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence                         2245678888888899999999999999854899996543

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.45  E-value=1.7e-13  Score=124.11  Aligned_cols=107  Identities=24%  Similarity=0.393  Sum_probs=71.2

Q ss_pred             eEEEcCCCcHHHHH----HHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeec
Q psy403           73 GYVDIPEGDEYKLK----AAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNS  148 (233)
Q Consensus        73 ~~~~~~~~~~~~i~----~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNS  148 (233)
                      .|..+   .+++|+    ++|...+||.++++++  .|..|++||+.......+.      +-|....-+..        
T Consensus       288 ~y~Nv---p~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~------~f~~~~~~~Ka--------  348 (437)
T cd00585         288 LYLNV---PMDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYEL------LFGIDFGLNKA--------  348 (437)
T ss_pred             eEEec---CHHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhh------hcCccccCCHH--------
Confidence            44444   344555    5778889999999994  5778999999532211111      11111100000        


Q ss_pred             CCccccccccceeccCCccccCCCccccccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEEec
Q psy403          149 WNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       149 wg~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                                         .+-.|.....+|||++||++.+.+++ .||+||||||++||++||++|.++
T Consensus       349 -------------------eRl~~~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         349 -------------------ERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             -------------------HHHhhcCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence                               01113334678999999999888776 699999999999999999999875

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.30  E-value=4e-12  Score=117.87  Aligned_cols=50  Identities=46%  Similarity=0.983  Sum_probs=44.0

Q ss_pred             CCCCeeEEEeeeeecCCCCceeEEeecCCc--cccccccceeccCCccccCCCccc
Q psy403          122 TQLDHAVLVVGYGTDENGNDYWLVKNSWNT--TWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus       122 ~~~~Hav~ivGyg~~~~~~~ywivkNSwg~--~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      ...+|||+|||||.++++.+|||||||||+  .||++||||+.|+.    ++|+++
T Consensus       400 ~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~----N~CGIe  451 (548)
T PTZ00364        400 SNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV----NAYNIE  451 (548)
T ss_pred             ccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCC----Cccccc
Confidence            357999999999975678899999999999  99999999999975    568765

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=5.7e-12  Score=109.62  Aligned_cols=54  Identities=26%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeec
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTD  136 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~  136 (233)
                      +.-.|+++++.+|-++..|......|..-.-+.+..  -+....+|||+||||++.
T Consensus       223 dnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~--~s~~~~gHAv~iVGyDDs  276 (372)
T COG4870         223 DNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYV--DSGENWGHAVLIVGYDDS  276 (372)
T ss_pred             cccchHHHHhhhccccceeEEecccccccccCCCCC--CccccccceEEEEecccc
Confidence            344577778888888766554111222211222321  222567999999999983

>PTZ00203 cathepsin L protease; Provisional

Probab=99.21  E-value=7.1e-12  Score=111.12  Aligned_cols=144  Identities=22%  Similarity=0.228  Sum_probs=80.7

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...|||.          ++.++++++++.|..+++.... .+.+.     ..+...++++|.++-.......-+.  
T Consensus       125 ~lP~~~DWR~----------~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~--  192 (348)
T PTZ00203        125 AVPDAVDWRE----------KGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGL--  192 (348)
T ss_pred             cCCCCCcCCc----------CCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCC--
Confidence            4677677763          4677888889999988875542 22111     1233568999988853211110000  


Q ss_pred             cCccccccc----cceEe------------CCCCCCCCC-CeeEEEeeeeecCC---CCceeEEeecCCcccccccccee
Q psy403          102 SHQSFQFYS----EGVYY------------EPECNSTQL-DHAVLVVGYGTDEN---GNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus       102 ~~~~f~~Y~----~Giy~------------~~~c~~~~~-~Hav~ivGyg~~~~---~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      ....|.+..    +|+..            .+.|..... ...+.+.||-....   ....+|.++++...-.+...|+.
T Consensus       193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~  272 (348)
T PTZ00203        193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS  272 (348)
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcC
Confidence            012233221    12211            114642211 23456777764322   12334556677665555557899


Q ss_pred             ccCCccccCCCccccccceeEEEE
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |++||+.  .|+...+||||+|||
T Consensus       273 Y~~GIy~--~c~~~~~nHaVliVG  294 (348)
T PTZ00203        273 YHSGVLT--SCIGEQLNHGVLLVG  294 (348)
T ss_pred             ccCceee--ccCCCCCCeEEEEEE
Confidence            9999986  387777899999986

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.17  E-value=2.1e-11  Score=114.79  Aligned_cols=50  Identities=40%  Similarity=1.008  Sum_probs=41.7

Q ss_pred             CCCCeeEEEeeeeecC-CCC--ceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403          122 TQLDHAVLVVGYGTDE-NGN--DYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus       122 ~~~~Hav~ivGyg~~~-~~~--~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      ...+|||+|||||.++ ++.  +|||||||||+.||++||||+.|+.    +.|+++
T Consensus       616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIE  668 (693)
T PTZ00049        616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIE  668 (693)
T ss_pred             ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCc
Confidence            4579999999999742 453  7999999999999999999999885    467664

>smart00645 Pept_C1 Papain family cysteine protease

Probab=98.75  E-value=1e-08  Score=82.61  Aligned_cols=27  Identities=44%  Similarity=0.869  Sum_probs=22.6

Q ss_pred             ceeccCCccccCCCccccccceeEEEE
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |+.|.+||+....|....++|+|+|||
T Consensus       101 f~~Y~~Gi~~~~~~~~~~~~Hav~ivG  127 (174)
T smart00645      101 FQFYKSGIYDHPGCGSGTLDHAVLIVG  127 (174)
T ss_pred             ccCCcCeEECCCCCCCCcccEEEEEEE
Confidence            778999998776787766899999975

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=98.74  E-value=9.9e-09  Score=86.70  Aligned_cols=58  Identities=16%  Similarity=0.047  Sum_probs=34.9

Q ss_pred             eEEEeeeeecCC--CCceeEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEE
Q psy403          127 AVLVVGYGTDEN--GNDYWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       127 av~ivGyg~~~~--~~~ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      ...+.+|....+  .....|+++++...--+.. .|+.|++||+....| ...++|||+|||
T Consensus       126 ~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~-~~~~~HaV~IVG  186 (239)
T cd02698         126 LYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQ-DPLINHIISVAG  186 (239)
T ss_pred             eEEeeeceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEccCCC-CCcCCeEEEEEE
Confidence            345666654211  1112234555554433332 588999999976656 456899999976

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>KOG1542|consensus

Probab=98.73  E-value=9.8e-10  Score=95.06  Aligned_cols=146  Identities=20%  Similarity=0.203  Sum_probs=97.3

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc-eEeceEE-----EcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG-AVDRGYV-----DIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~-~~i~~~~-----~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|.+.|||          .++++|++++++.|..++++.+ ..+.+-.     .+...+|++|.++-...--..-++  
T Consensus       156 ~lP~~fDWR----------~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GGl--  223 (372)
T KOG1542|consen  156 SLPESFDWR----------DKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGGL--  223 (372)
T ss_pred             CCCcccchh----------ccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCCCC--
Confidence            467666676          4789999999999999998765 2333222     233568888888743211111111  


Q ss_pred             cCcccccc--ccceEe----------CCCCCCCCCCeeEEEeeeeec---CCCCceeEEeecCCccccccccceeccCCc
Q psy403          102 SHQSFQFY--SEGVYY----------EPECNSTQLDHAVLVVGYGTD---ENGNDYWLVKNSWNTTWGDEGYIKMARNRV  166 (233)
Q Consensus       102 ~~~~f~~Y--~~Giy~----------~~~c~~~~~~Hav~ivGyg~~---~~~~~ywivkNSwg~~wg~~G~~~~~r~gi  166 (233)
                      +...|.+-  .+|.-.          ...|......-.|.|-++-..   ++....|++++++-+.-.+..++|.||+||
T Consensus       224 ~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV  303 (372)
T KOG1542|consen  224 MDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGV  303 (372)
T ss_pred             hhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccc
Confidence            12334431  123322          125654444556778888653   455678999999988888899999999999


Q ss_pred             ccc--CCCccccccceeEEEE
Q psy403          167 YYE--PECNSTQLDHAVLVVG  185 (233)
Q Consensus       167 ~~~--~~c~~~~~~haV~vVG  185 (233)
                      +.-  ..|+...+|||||+||
T Consensus       304 ~~P~~~~Cs~~~~~HaVLlvG  324 (372)
T KOG1542|consen  304 SCPSKYICSPKLLNHAVLLVG  324 (372)
T ss_pred             cCCCcccCCccccCceEEEEe
Confidence            875  3599988999999975

>KOG1543|consensus

Probab=98.68  E-value=1.8e-08  Score=88.80  Aligned_cols=158  Identities=18%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccc-cccCCCCCcCCCCCcce-EeceEE------EcCCCcHHHHHHHHHhcCCeEEEE
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVT-VTSGDDNCRYKRAKSGA-VDRGYV------DIPEGDEYKLKAAVATIGPVSIAI   99 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~-~~~~~~~C~~~~~~~~~-~i~~~~------~~~~~~~~~i~~~i~~~GPv~v~~   99 (233)
                      .+|...|||.          +++++ ++++++.|..++++... .+.+..      .+...++++|.++-...+.   ++
T Consensus       108 ~~p~s~DwR~----------~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~---GC  174 (325)
T KOG1543|consen  108 DLPDSFDWRD----------KGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGD---GC  174 (325)
T ss_pred             hCCCCccccc----------cCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCC---Cc
Confidence            4676556652          22444 47789999998876542 111111      4446688888888653122   11


Q ss_pred             ec--cCccccccc-cceEe----------CCCCCCCCCCeeEEEeeeeecCCCCcee----EEeecCCccccccc-ccee
Q psy403          100 DA--SHQSFQFYS-EGVYY----------EPECNSTQLDHAVLVVGYGTDENGNDYW----LVKNSWNTTWGDEG-YIKM  161 (233)
Q Consensus       100 ~~--~~~~f~~Y~-~Giy~----------~~~c~~~~~~Hav~ivGyg~~~~~~~yw----ivkNSwg~~wg~~G-~~~~  161 (233)
                      +-  ....|++.. .|+..          ...|......-.+.+.|+-....+ +..    +.++++.+.--+.+ -|+.
T Consensus       175 ~GG~~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~~F~~  253 (325)
T KOG1543|consen  175 NGGEPKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYEDFSL  253 (325)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehhhhhh
Confidence            11  122344432 23322          124544443455666666543322 222    34566766555544 5999


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEec
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                      |++||+....|.               +. ..+=+++-=.||+  +++.-.+|.++
T Consensus       254 Y~~GVy~~~~~~---------------~~-~~~Hav~iVGyG~--~~~~~YWivkN  291 (325)
T KOG1543|consen  254 YKGGVYAEEKGD---------------DK-EGDHAVLIVGYGT--GDGVDYWIVKN  291 (325)
T ss_pred             ccCceEeCCCCC---------------CC-CCCceEEEEEEcC--CCCceeEEEEc
Confidence            999999876662               01 2455666667888  44445566665

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=98.62  E-value=3.7e-08  Score=83.31  Aligned_cols=28  Identities=11%  Similarity=0.023  Sum_probs=16.7

Q ss_pred             EEeecCCccccccc-cceeccCCccccCC
Q psy403          144 LVKNSWNTTWGDEG-YIKMARNRVYYEPE  171 (233)
Q Consensus       144 ivkNSwg~~wg~~G-~~~~~r~gi~~~~~  171 (233)
                      |.++++...--+.. -|+.|++||+....
T Consensus       140 i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~  168 (243)
T cd02621         140 IYRNGPIVVAFEVYSDFDFYKEGVYHHTD  168 (243)
T ss_pred             HHHcCCEEEEEEecccccccCCeEECcCC
Confidence            44555544333322 47889999987553

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=98.62  E-value=3.3e-08  Score=83.39  Aligned_cols=41  Identities=17%  Similarity=0.117  Sum_probs=26.7

Q ss_pred             EEeecCCcccccc-ccceeccCCccccCCCccccccceeEEEE
Q psy403          144 LVKNSWNTTWGDE-GYIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       144 ivkNSwg~~wg~~-G~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |+++++...-.+. -.|+.|++||+... |....++|||+|||
T Consensus       151 l~~~GPv~v~i~~~~~f~~Y~~Giy~~~-~~~~~~~HaV~iVG  192 (236)
T cd02620         151 IMTNGPVQAAFTVYEDFLYYKSGVYQHT-SGKQLGGHAVKIIG  192 (236)
T ss_pred             HHHCCCeEEEEEechhhhhcCCcEEeec-CCCCcCCeEEEEEE
Confidence            3344444433333 25778899998643 66667899999976

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=98.60  E-value=1.7e-07  Score=77.15  Aligned_cols=70  Identities=24%  Similarity=0.376  Sum_probs=42.4

Q ss_pred             CCCCCCCCCeeEEEeeeeecCC----CCceeEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEEe
Q psy403          117 PECNSTQLDHAVLVVGYGTDEN----GNDYWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       117 ~~c~~~~~~Hav~ivGyg~~~~----~~~ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      ..|..........|.+|.....    ..+-.|.++++...--... .|..|++||+..+.|.....+|||+||||
T Consensus        93 ~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy  167 (210)
T cd02248          93 GTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGY  167 (210)
T ss_pred             CCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEE
Confidence            3564433334555666654221    2234455656554332222 57778999998777766678999999998

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=98.30  E-value=4.3e-07  Score=88.68  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             eecCCccccccccceec-cCCccccCCCccccccceeEEEEeecC
Q psy403          146 KNSWNTTWGDEGYIKMA-RNRVYYEPECNSTQLDHAVLVVGYGTD  189 (233)
Q Consensus       146 kNSwg~~wg~~G~~~~~-r~gi~~~~~c~~~~~~haV~vVGyg~~  189 (233)
                      ..++.....+...|+.| .+|++....|+...++|||+|||||++
T Consensus       689 ~kGPVaV~IdAsdf~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~  733 (1004)
T PTZ00462        689 NKGSVIAYIKAENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNY  733 (1004)
T ss_pred             hcCCEEEEEEeehHHhhhcCCccccCCCCCCcCCceEEEEEeccc
Confidence            33444444444445566 589877778988788999999999975

>PTZ00200 cysteine proteinase; Provisional

Probab=98.28  E-value=4.9e-07  Score=82.78  Aligned_cols=36  Identities=36%  Similarity=1.010  Sum_probs=28.7

Q ss_pred             CCceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403          139 GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus       139 ~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      +.+|||||||||+.||++||+++.|+.. -.+.|+.+
T Consensus       402 g~~YWIIkNSWG~~WGe~GY~ri~r~~~-g~n~CGI~  437 (448)
T PTZ00200        402 KKRYWIIKNSWGTDWGENGYMRLERTNE-GTDKCGIL  437 (448)
T ss_pred             CCceEEEEcCCCCCcccCeeEEEEeCCC-CCCcCCcc
Confidence            3479999999999999999999998632 13468763

>PTZ00021 falcipain-2; Provisional

Probab=98.26  E-value=5.6e-07  Score=82.93  Aligned_cols=36  Identities=28%  Similarity=0.822  Sum_probs=29.8

Q ss_pred             CCceeEEeecCCccccccccceeccCCccccCCCcc
Q psy403          139 GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNS  174 (233)
Q Consensus       139 ~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~  174 (233)
                      +.+|||||||||+.||++||+++.|+.....+.|++
T Consensus       444 ~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI  479 (489)
T PTZ00021        444 KRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSL  479 (489)
T ss_pred             CCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCC
Confidence            468999999999999999999999875433456876

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=98.23  E-value=9.3e-07  Score=72.74  Aligned_cols=61  Identities=28%  Similarity=0.409  Sum_probs=40.4

Q ss_pred             eEEEeeeeecCC----CCceeEEeecCCccccc-cc-cceeccCCccccCCCccccccceeEEEEee
Q psy403          127 AVLVVGYGTDEN----GNDYWLVKNSWNTTWGD-EG-YIKMARNRVYYEPECNSTQLDHAVLVVGYG  187 (233)
Q Consensus       127 av~ivGyg~~~~----~~~ywivkNSwg~~wg~-~G-~~~~~r~gi~~~~~c~~~~~~haV~vVGyg  187 (233)
                      .+.+-+|.....    .....|.++++...... .. .|..+++||+....|.....+|||+|||||
T Consensus       109 ~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~  175 (219)
T PF00112_consen  109 YVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD  175 (219)
T ss_dssp             EBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE
T ss_pred             cccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccccccccccccccccccc
Confidence            466777765322    12334455555433221 22 477888999988888888899999999999

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.23  E-value=1.4e-06  Score=79.36  Aligned_cols=41  Identities=41%  Similarity=0.832  Sum_probs=34.5

Q ss_pred             cccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEEe
Q psy403          176 QLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMAR  216 (233)
Q Consensus       176 ~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~r  216 (233)
                      ..+||++++|..-|.+|+ .+|+|+||||+..|.+||+.|..
T Consensus       358 ~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  358 TMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             --EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             CCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            468999999999988887 59999999999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.13  E-value=9.5e-06  Score=74.04  Aligned_cols=76  Identities=29%  Similarity=0.485  Sum_probs=51.3

Q ss_pred             HHHHHHHhcCCeEEEEeccCccccccccceEeCCCC--------------------CCCCCCeeEEEeeeeecCCCC-ce
Q psy403           84 KLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC--------------------NSTQLDHAVLVVGYGTDENGN-DY  142 (233)
Q Consensus        84 ~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c--------------------~~~~~~Hav~ivGyg~~~~~~-~y  142 (233)
                      .+.+.|...-||-.+.++. ..| ..+.||.....-                    .....+|||+|+|...+++++ .+
T Consensus       301 ~~i~~Lk~G~~VwfgcDV~-k~~-~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~  378 (438)
T PF03051_consen  301 AAIKSLKAGYPVWFGCDVG-KFF-DRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVR  378 (438)
T ss_dssp             HHHHHHHTT--EEEEEETT-TTE-ETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEE
T ss_pred             HHHHHHHcCCcEEEeccCC-ccc-cccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeE
Confidence            4455577888999999994 333 456777753210                    012348999999999877777 59


Q ss_pred             eEEeecCCcccccccccee
Q psy403          143 WLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus       143 wivkNSwg~~wg~~G~~~~  161 (233)
                      |+|+||||+..|.+|||.+
T Consensus       379 wkVeNSWG~~~g~kGy~~m  397 (438)
T PF03051_consen  379 WKVENSWGTDNGDKGYFYM  397 (438)
T ss_dssp             EEEE-SBTTTSTBTTEEEE
T ss_pred             EEEEcCCCCCCCCCcEEEE
Confidence            9999999999999999753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=97.92  E-value=1.2e-05  Score=66.13  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=18.7

Q ss_pred             ceeccCCcc-----ccCCCccccccceeEEEE
Q psy403          159 IKMARNRVY-----YEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       159 ~~~~r~gi~-----~~~~c~~~~~~haV~vVG  185 (233)
                      |..+.++++     ....|.....+|||+|||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivG  179 (223)
T cd02619         148 FDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVG  179 (223)
T ss_pred             hhcccCccccccccccccCCCccCCeEEEEEe
Confidence            455666664     344466677899999975

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=97.52  E-value=0.00011  Score=67.21  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=15.9

Q ss_pred             hHHHHHHhCCCcCCCCCCcccc
Q psy403            3 QAFQYIKDNHGIDTESSYPYEA   24 (233)
Q Consensus         3 ~a~~y~~~~~Gi~~e~~yPY~~   24 (233)
                      .+...+ +++|+++.++||=+.
T Consensus       140 m~~~li-~KYGvVPk~~~pet~  160 (437)
T cd00585         140 MLVNLI-EKYGLVPKSVMPESF  160 (437)
T ss_pred             HHHHHH-HHcCCCcccccCCCc
Confidence            455666 578999999999653

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>KOG1544|consensus

Probab=97.32  E-value=0.0001  Score=63.81  Aligned_cols=45  Identities=31%  Similarity=0.818  Sum_probs=39.4

Q ss_pred             CCCCeeEEEeeeeecC----CCCceeEEeecCCccccccccceeccCCc
Q psy403          122 TQLDHAVLVVGYGTDE----NGNDYWLVKNSWNTTWGDEGYIKMARNRV  166 (233)
Q Consensus       122 ~~~~Hav~ivGyg~~~----~~~~ywivkNSwg~~wg~~G~~~~~r~gi  166 (233)
                      ....|+|.|.|||++.    ...+||+..||||+.||++|||++.|+..
T Consensus       399 ~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN  447 (470)
T KOG1544|consen  399 RHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN  447 (470)
T ss_pred             hcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc
Confidence            4678999999999853    34579999999999999999999999873

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=96.59  E-value=0.005  Score=53.93  Aligned_cols=36  Identities=39%  Similarity=0.814  Sum_probs=31.4

Q ss_pred             CCeeEEEeeeeecCCC-CceeEEeecCCccccccccc
Q psy403          124 LDHAVLVVGYGTDENG-NDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus       124 ~~Hav~ivGyg~~~~~-~~ywivkNSwg~~wg~~G~~  159 (233)
                      ..|||+|.|.+.++++ .--|.|.||||..-|.+|||
T Consensus       361 mTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~Gyf  397 (444)
T COG3579         361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYF  397 (444)
T ss_pred             HHHHHHhhccccccCCCceeeEeecccccccCCCceE
Confidence            4799999999977664 45899999999999999987

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=95.54  E-value=0.0053  Score=53.75  Aligned_cols=40  Identities=38%  Similarity=0.748  Sum_probs=35.1

Q ss_pred             cccceeEEEEeecCCCCc-ceEEEeccCCCCCCCCceEEEE
Q psy403          176 QLDHAVLVVGYGTDENGN-DYWLVKNSWNTTWGDEGYIKMA  215 (233)
Q Consensus       176 ~~~haV~vVGyg~~~~~~-~yWiv~nswg~~WG~~Gy~~i~  215 (233)
                      ...||+++.|-..+++|. -=|.|.||||.+=|.+||+-+.
T Consensus       360 LmTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaS  400 (444)
T COG3579         360 LMTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVAS  400 (444)
T ss_pred             HHHHHHHhhccccccCCCceeeEeecccccccCCCceEeeh
Confidence            468999999999888765 5699999999999999999764

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=92.95  E-value=0.1  Score=46.29  Aligned_cols=44  Identities=39%  Similarity=0.860  Sum_probs=37.0

Q ss_pred             ccccceeEEEEeecCCC---------CcceEEEeccCCCCCCCCceEEEEecC
Q psy403          175 TQLDHAVLVVGYGTDEN---------GNDYWLVKNSWNTTWGDEGYIKMARNR  218 (233)
Q Consensus       175 ~~~~haV~vVGyg~~~~---------~~~yWiv~nswg~~WG~~Gy~~i~r~~  218 (233)
                      +..+|||++|||...-.         +..-||||||||++||++||++|....
T Consensus       262 ~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y  314 (372)
T COG4870         262 ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY  314 (372)
T ss_pred             ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence            45689999999985432         345999999999999999999998864

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=91.10  E-value=0.5  Score=35.27  Aligned_cols=60  Identities=23%  Similarity=0.473  Sum_probs=33.8

Q ss_pred             CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           78 PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        78 ~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      ...+.++|+++|.+..||.+.+.......   ....+.     .....|.|+|+||...  +  ++++..+|
T Consensus        85 ~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-----~~~~~H~vvi~Gy~~~--~--~~~v~DP~  144 (144)
T PF13529_consen   85 SDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-----GTYGGHYVVIIGYDED--G--YVYVNDPW  144 (144)
T ss_dssp             TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE-----E-TTEEEEEEEEE-SS--E---EEEE-TT
T ss_pred             cCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC-----CCcCCEEEEEEEEeCC--C--EEEEeCCC
Confidence            35688999999999889999987421111   111121     1356899999999872  1  56655443

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate

Probab=85.93  E-value=3.1  Score=34.47  Aligned_cols=64  Identities=16%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCcccc--ccccceEe--CCCCC---CCCCCeeEEEeeeeecCCCCceeEEeec
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQ--FYSEGVYY--EPECN---STQLDHAVLVVGYGTDENGNDYWLVKNS  148 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~--~Y~~Giy~--~~~c~---~~~~~Hav~ivGyg~~~~~~~ywivkNS  148 (233)
                      -+.++|..+|...||+.+-+++..  +.  .-++-...  ...|-   ....+|-|+|+||+.   ..+-++++|=
T Consensus       111 vs~~ei~~hl~~g~~aIvLVd~~~--L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~---~~~~~~yrdP  181 (212)
T PF09778_consen  111 VSIQEIIEHLSSGGPAIVLVDASL--LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDA---ATKEFEYRDP  181 (212)
T ss_pred             ccHHHHHHHHhCCCcEEEEEcccc--ccChhhcccccccccccccCCCCCccEEEEEEEeecC---CCCeEEEeCC
Confidence            478999999999999888887631  11  00111111  11221   235689999999986   3445665553

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.23  E-value=4.8  Score=32.26  Aligned_cols=55  Identities=25%  Similarity=0.436  Sum_probs=38.1

Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      +-+++++++.++-|+.+..+...       +      . +....+||+.++||-...++.++.++=|=|
T Consensus        90 s~~eV~~~~~~nk~i~i~~~~v~-------~------~-~~~~~gHAlavvGya~~~~g~~~y~~WNPW  144 (175)
T PF05543_consen   90 SFDEVKKLIDNNKGIAILADRVE-------Q------T-NGPHAGHALAVVGYAKPNNGQKTYYFWNPW  144 (175)
T ss_dssp             -HHHHHHHHHTT-EEEEEEEETT-------S------C-TTB--EEEEEEEEEEEETTSEEEEEEE-TT
T ss_pred             CHHHHHHHHHcCCCeEEEecccc-------c------C-CCCccceeEEEEeeeecCCCCeEEEEeCCc
Confidence            68899999999888877665421       1      1 223568999999998756678899998988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		1e-38
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		7e-38
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		7e-38
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		8e-38
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		8e-38
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		8e-38
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		9e-38
3of8_A	221	Structural Basis For Reversible And Irreversible In		9e-38
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		9e-38
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		1e-37
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		3e-36
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		3e-36
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		3e-36
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		3e-36
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		3e-36
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		3e-36
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		4e-36
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		9e-36
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		3e-35
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		4e-35
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		5e-34
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		2e-33
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		6e-33
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		1e-32
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		1e-32
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		1e-32
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		1e-32
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		1e-32
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		1e-32
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		1e-32
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		1e-32
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		1e-32
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		1e-32
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		3e-32
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		3e-30
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		1e-27
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		4e-27
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		4e-27
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-25
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		6e-13
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		1e-25
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		8e-14
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		8e-25
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		1e-24
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		4e-19
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-23
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-14
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		1e-23
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		2e-14
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		3e-23
2act_A	220	Crystallographic Refinement Of The Structure Of Act		3e-22
2act_A	220	Crystallographic Refinement Of The Structure Of Act		3e-14
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		3e-22
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		2e-10
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		3e-20
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		3e-20
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		4e-20
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		2e-19
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		8e-11
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		3e-19
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		1e-10
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		3e-19
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		1e-10
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		4e-19
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		3e-07
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		5e-19
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		1e-18
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		4e-10
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		2e-17
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		9e-09
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		6e-17
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		2e-15
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		1e-08
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		2e-15
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		4e-15
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		2e-10
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		2e-13
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		4e-08
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		2e-13
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		4e-10
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		2e-13
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		2e-06
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		3e-12
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		4e-07
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		3e-12
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		4e-07
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		9e-12
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		1e-09
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		2e-11
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		1e-08
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		4e-11
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		4e-08
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		4e-11
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		4e-08
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		4e-11
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		5e-08
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		6e-11
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		4e-08
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		6e-11
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		4e-08
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		6e-11
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		4e-08
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		8e-11
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		1e-07
1icf_B	42	Crystal Structure Of Mhc Class Ii Associated P41 Ii		2e-10
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		1e-09
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		1e-08
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		1e-09
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		1e-08
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		1e-09
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		2e-08
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		2e-09
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		8e-09
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		2e-09
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		9e-09
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-09
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		3e-09
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		1e-08
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		3e-09
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-08
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		3e-09
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-08
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		3e-09
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		9e-09
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		3e-09
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		5e-05
1mir_A	322	Rat Procathepsin B Length = 322		5e-09
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-09
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		6e-09
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		8e-09
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		1e-04
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		1e-08
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		1e-04
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		1e-08
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		1e-06
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		2e-08
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		9e-05
1pci_A	322	Procaricain Length = 322		9e-08
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		1e-07
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		1e-07
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		2e-07
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		2e-04
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		2e-07
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		7e-07
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		2e-07
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		7e-07
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		2e-07
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		7e-07
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		1e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		5e-06
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-06
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		5e-06
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		3e-06
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		3e-06
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		4e-06
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		4e-06
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		4e-06
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		4e-06
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		4e-06
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		4e-06

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 162 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 190
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 191 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 249
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ +GN YWLVKNSW   WG  GY+KMA++R
Sbjct: 250 SEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 108 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 136
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 137 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 195
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 196 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 243

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 166 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 194
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 195 KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 253
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 254 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 71  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 100 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 159 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 71  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 100 KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 159 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 103/168 (61%), Gaps = 35/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG---TDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  +DH VLVVGYG   T+ + N YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDR 205

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 70  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 99  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW   WG++GYI MARN+
Sbjct: 159 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 202

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 66  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 94
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 95  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 154
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW   WG++GYI MARN+
Sbjct: 155 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 198

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 96/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 68  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 96
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG +  GN +W++KNSW   WG  GYIKMARN+
Sbjct: 157 SDNLNHAVLAVGYG-ESKGNKHWIIKNSWGENWGMGGYIKMARNK 200

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 68  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 96
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW   WG++GYI MARN+
Sbjct: 157 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 200

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 67  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 95
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 96  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 155
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW   WG++GYI MARN+
Sbjct: 156 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 199

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 167 MTNAFQYVQKNRGIDSEDAYPY-------------------------------VGQEESC 195
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 196 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 255
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW   WG++GYI MARN+
Sbjct: 256 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNK 299

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  D++C
Sbjct: 68  MTNAFQYVQRNRGIDSEDAYPYVGQ-------------------------------DESC 96
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  C+
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCS 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW  +WG++GYI MARN+
Sbjct: 157 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGESWGNKGYILMARNK 200

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 96/165 (58%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  D++C
Sbjct: 68  MTNAFQYVQRNRGIDSEDAYPYVGQ-------------------------------DESC 96
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS GVYY+  C+
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCS 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG  + GN +W++KNSW  +WG+ GYI MARN+
Sbjct: 157 SDALNHAVLAVGYGI-QAGNKHWIIKNSWGESWGNAGYILMARNK 200

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 34/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M +AFQY+K+N G+D+E SYPY A+                               D+ C
Sbjct: 70  MARAFQYVKENGGLDSEESYPYVAV-------------------------------DEIC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y+   S A D G+  +  G E  L  AVAT+GP+S+A+DA H SFQFY  G+Y+EP+C+
Sbjct: 99  KYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG +   +D   YWLVKNSW   WG  GY+K+A+++
Sbjct: 159 SKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 34/168 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M +AFQY+K+N G+D+E SYPY A+                               D+ C
Sbjct: 70  MARAFQYVKENGGLDSEESYPYVAV-------------------------------DEIC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y+   S A D G+  +  G E  L  AVAT+GP+S+A+DA H SFQFY  G+Y+EP+C+
Sbjct: 99  KYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCS 158
Query: 121 STQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEGYIKMARNR 165
           S  LDH VLVVGYG +   +D   YWLVKNSW   WG  GY+K+A+++
Sbjct: 159 SKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDK 206

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 32/165 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+  +C+
Sbjct: 99  KYNPKYSVANDVGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCS 157
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S+ L+HA+LVVGYG   N   YWLVKNSW   WG  GY+KMA++R
Sbjct: 158 SSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDR 202

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 94/165 (56%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y  A   A  R Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G++GYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 93/165 (56%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A  R Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G++GYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEKGYIRMARNK 202

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 72  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 169 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 197
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 198 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 256
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 257 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 300

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 73  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 101
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 102 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 160
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 161 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 204

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 74  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 102
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 103 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 161
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 162 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 205

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 72  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 72  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 160 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 203

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 92/165 (55%), Gaps = 33/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 71  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DLKC 99
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 100 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 158
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+
Sbjct: 159 TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNK 202

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 34/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF YI D +GI +ES+YPYEA                                 D C
Sbjct: 184 MDSAFSYIHD-YGIMSESAYPYEAQ-------------------------------GDYC 211
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R+  ++S     GY D+P GDE  L  AV   GPV++AIDA+ +  QFYS G++Y+  CN
Sbjct: 212 RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCN 270
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            + L+H VLVVGYG+D NG DYW++KNSW + WG+ GY +  RN
Sbjct: 271 QSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRN 313

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 84/164 (51%), Gaps = 33/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AF Y+  N GID+E +YPYE                                 D NC
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYEM-------------------------------ADGNC 213
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y   +  A   GYV +   DE  L   VAT GPV++A DA    F  YS GVYY P C 
Sbjct: 214 HYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCE 272
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           + +  HAVL+VGYG +ENG DYWLVKNSW   WG +GY K+ARN
Sbjct: 273 TNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGYFKIARN 315

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 32/134 (23%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG 134
           S  +DH VLVVGYG
Sbjct: 158 SEDMDHGVLVVGYG 171

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 32/134 (23%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP+  E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157
Query: 121 STQLDHAVLVVGYG 134
           S  +DH VLVVGYG
Sbjct: 158 SEDMDHGVLVVGYG 171

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 90/164 (54%), Gaps = 30/164 (18%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF+YIK+N G+ TE++YPY A          R  C    +     N   V   D   
Sbjct: 72  MDNAFEYIKNNGGLITEAAYPYRAA---------RGTC---NVARAAQNSPVVVHID--- 116
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
                       G+ D+P   E  L  AVA   PVS+A++AS ++F FYSEGV+   EC 
Sbjct: 117 ------------GHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTG-ECG 162
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            T+LDH V VVGYG  E+G  YW VKNSW  +WG++GYI++ ++
Sbjct: 163 -TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD 205

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
           +  EC  T+LDH V VVGYG  E+G  YW VKNSW  +WG++GYI++ ++   +   CG+
Sbjct: 157 FTGECG-TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215
Query: 225 ASSASFPL 232
           A  AS+P+
Sbjct: 216 AMEASYPV 223

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 88/173 (50%), Gaps = 35/173 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF++IK   GI TE++YPYEA                                D  C
Sbjct: 70  MDYAFEFIKQRGGITTEANYPYEAY-------------------------------DGTC 98
Query: 61  RYKRAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
              +  + AV   G+ ++PE DE  L  AVA   PVS+AIDA    FQFYSEGV+    C
Sbjct: 99  DVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFT-GSC 156
Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             T+LDH V +VGYGT  +G  YW VKNSW   WG++GYI+M R     E  C
Sbjct: 157 -GTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLC 208

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGVASSASFP 231
           T+LDH V +VGYGT  +G  YW VKNSW   WG++GYI+M R   ++E  CG+A  AS+P
Sbjct: 158 TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP 217
Query: 232 L 232
           +
Sbjct: 218 I 218

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 89/166 (53%), Gaps = 35/166 (21%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQY+ D+ GI +E +YPY A                                D+ C
Sbjct: 76  MNDAFQYVLDSGGICSEDAYPYLAR-------------------------------DEEC 104
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R +  +      G+ D+P   E  +KAA+A   PVSIAI+A    FQFY EGV+ +  C 
Sbjct: 105 RAQSCEKVVKILGFKDVPRRSEAAMKAALAK-SPVSIAIEADQMPFQFYHEGVF-DASCG 162
Query: 121 STQLDHAVLVVGYGTD-ENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
            T LDH VL+VGYGTD E+  D+W++KNSW T WG +GY+ MA ++
Sbjct: 163 -TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHK 207

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 34/165 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ A+QY+K   G++TESSYPY A+                               +  C
Sbjct: 161 MENAYQYLKQ-FGLETESSYPYTAV-------------------------------EGQC 188
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY +    A   G+  +  G E +LK  V   GP ++A+D     F  Y  G+Y    C+
Sbjct: 189 RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDV-ESDFMMYRSGIYQSQTCS 247
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             +++HAVL VGYGT + G DYW+VKNSW  +WG+ GYI+M RNR
Sbjct: 248 PLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNR 291

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN 220
           M R+ +Y    C+  +++HAVL VGYGT + G DYW+VKNSW  +WG+ GYI+M RNR N
Sbjct: 235 MYRSGIYQSQTCSPLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNRGN 293
Query: 221 NCGVASSASFPLV 233
            CG+AS AS P+V
Sbjct: 294 MCGIASLASLPMV 306

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M   FQ+I +N GI+TE++YPY                             T   G  N 
Sbjct: 70  MTDGFQFIINNGGINTEANYPY-----------------------------TAEEGQCNL 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             ++ K  ++D  Y ++P  +E+ L+ AVA   PVS+A++A+  +FQ YS G++  P C 
Sbjct: 101 DLQQEKYVSIDT-YENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRN 199

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE--NNCGVASSASFPL 232
           T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN      CG+A  AS+P+
Sbjct: 158 TAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M   FQ+I +N GI+TE++YPY                             T   G  N 
Sbjct: 70  MTDGFQFIINNGGINTEANYPY-----------------------------TAEEGQCNL 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             ++ K  ++D  Y ++P  +E+ L+ AVA   PVS+A++A+  +FQ YS G++  P C 
Sbjct: 101 DLQQEKYVSIDT-YENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRN 199

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE--NNCGVASSASFPL 232
           T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN      CG+A  AS+P+
Sbjct: 158 TAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 34/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           +   FQ+I +N GI+TE +YPY A                               G+ N 
Sbjct: 70  ITDGFQFIINNGGINTEENYPYTAQ-----------------------------DGECNV 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             +  K   +D  Y ++P  +E+ L+ AV T  PVS+A+DA+  +F+ YS G++  P C 
Sbjct: 101 DLQNEKYVTIDT-YENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYSSGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            T +DHAV +VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN
Sbjct: 157 GTAIDHAVTIVGYGT-EGGIDYWIVKNSWDTTWGEEGYMRILRN 199

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 34/164 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           +   FQ+I ++ GI+TE +YPY A                               GD + 
Sbjct: 70  ITDGFQFIINDGGINTEENYPYTAQ-----------------------------DGDCDV 100
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             +  K   +D  Y ++P  +E+ L+ AV T  PVS+A+DA+  +F+ Y+ G++  P C 
Sbjct: 101 ALQDQKYVTIDT-YENVPYNNEWALQTAV-TYQPVSVALDAAGDAFKQYASGIFTGP-C- 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            T +DHA+++VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN
Sbjct: 157 GTAVDHAIVIVGYGT-EGGVDYWIVKNSWDTTWGEEGYMRILRN 199

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN--RENNCGVASSASFPL 232
           T +DHA+++VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN      CG+A+  S+P+
Sbjct: 158 TAVDHAIVIVGYGT-EGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 36/177 (20%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQYI  N GIDT+ +YPY A+                                 +C
Sbjct: 68  MNNAFQYIITNGGIDTQQNYPYSAV-------------------------------QGSC 96
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +  R +  +++ G+  +   +E  L++AVA+  PVS+ ++A+   FQ YS G++  P C 
Sbjct: 97  KPYRLRVVSIN-GFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP-CG 153
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQL 177
           + Q +H V++VGYGT ++G +YW+V+NSW   WG++GYI M RN       C   QL
Sbjct: 154 TAQ-NHGVVIVGYGT-QSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQL 208

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
           +   C + Q +H V++VGYGT ++G +YW+V+NSW   WG++GYI M RN  ++   CG+
Sbjct: 148 FTGPCGTAQ-NHGVVIVGYGT-QSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205
Query: 225 ASSASFP 231
           A   S+P
Sbjct: 206 AQLPSYP 212

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 35/177 (19%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQ+I +N GI++E +YPY                    IC+   N   V+      
Sbjct: 70  MNPAFQFIVNNGGINSEETYPYRGQDG---------------ICNSTVNAPVVS------ 108
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
                    +D  Y ++P  +E  L+ AVA   PVS+ +DA+ + FQ Y  G++    CN
Sbjct: 109 ---------IDS-YENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG-SCN 156
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQL 177
               +HA+ VVGYGT EN  D+W+VKNSW   WG+ GYI+  RN    + +C  T+ 
Sbjct: 157 -ISANHALTVVGYGT-ENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRF 211

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 41/163 (25%)
Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
            D+A+QYI  N GIDTE++YPY+A     P    +++  +                 D C
Sbjct: 68  FDRAYQYIIANGGIDTEANYPYKAFQG--PCRAAKKVVRI-----------------DGC 108
Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +               +P+ +E  LK AVA+  P  +AIDAS + FQ Y  G++  P   
Sbjct: 109 K--------------GVPQCNENALKNAVASQ-PSVVAIDASSKQFQHYKGGIFTGP--C 151
Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
            T+L+H V++VGYG      DYW+V+NSW   WG++GY +M R
Sbjct: 152 GTKLNHGVVIVGYG-----KDYWIVRNSWGRHWGEQGYTRMKR 189

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 81/160 (50%), Gaps = 41/160 (25%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A+QYI DN GIDTE++YPY+A+                                  CR  
Sbjct: 71  AYQYIIDNGGIDTEANYPYKAVQG-------------------------------PCR-- 97
Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
            AK      GY  +P  +E  LK AVA+  P  +AIDAS + FQ Y  G++  P    T+
Sbjct: 98  AAKKVVRIDGYKGVPHCNENALKKAVAS-QPSVVAIDASSKQFQHYKSGIFSGP--CGTK 154
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           L+H V++VGY       DYW+V+NSW   WG++GYI+M R
Sbjct: 155 LNHGVVIVGYW-----KDYWIVRNSWGRYWGEQGYIRMKR 189

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1   MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M+ AF++I  ++N  + TE SYPY +     P                            
Sbjct: 68  MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C       GA   G+V++P+ DE ++ A +A  GPV++A+DAS  S+  Y+ GV     
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+  N+   + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+   N C V   AS  
Sbjct: 155 CVSEQLDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
           +V
Sbjct: 213 VV 214

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1   MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M+ AF++I  ++N  + TE SYPY +     P                            
Sbjct: 68  MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C       GA   G+V++P+ DE ++ A +A  GPV++A+DAS  S+  Y+ GV     
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+  N+   + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+   N C V   AS  
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
           +V
Sbjct: 213 VV 214

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 38/178 (21%)
Query: 1   MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M+ AF++I  ++N  + TE SYPY +     P                            
Sbjct: 68  MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C       GA   G+V++P+ DE ++ A +A  GPV++A+DAS  S+  Y+ GV     
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+  N+   + E +S
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+   N C V   AS  
Sbjct: 155 CVSEQLDHGVLLVGY-NDGAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
           +V
Sbjct: 213 VV 214

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 41/160 (25%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A+QYI +N GIDT+++YPY+A+                  C   S  V++          
Sbjct: 71  AYQYIINNGGIDTQANYPYKAVQG---------------PCQAASKVVSID--------- 106
Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
                    GY  +P  +E  LK AVA + P ++AIDAS   FQ YS G++  P    T+
Sbjct: 107 ---------GYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGP--CGTK 154
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           L+H V +VGY  +     YW+V+NSW   WG++GYI+M R
Sbjct: 155 LNHGVTIVGYQAN-----YWIVRNSWGRYWGEKGYIRMLR 189

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           T+L+H V +VGY  +     YW+V+NSW   WG++GYI+M   R   CG+   A  P
Sbjct: 153 TKLNHGVTIVGYQAN-----YWIVRNSWGRYWGEKGYIRML--RVGGCGLCGIARLP 202

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 35/165 (21%)
Query: 3   QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRY 62
           QAF+YI+ N GI  E +YPY+                                 DD+C++
Sbjct: 73  QAFEYIRYNKGIMGEDTYPYKGQ-------------------------------DDHCKF 101
Query: 63  KRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
           +  K+ A  +   +I   DE  +  AVA   PVS A + ++  F  Y +G+Y    C+ T
Sbjct: 102 QPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKT 160
Query: 123 --QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
             +++HAVL VGYG +ENG  YW+VKNSW   WG  GY  + R +
Sbjct: 161 PDKVNHAVLAVGYG-EENGIPYWIVKNSWGPQWGMNGYFLIERGK 204

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 38/178 (21%)
Query: 1   MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M+ AF++I  ++N  + TE SYPY +     P                            
Sbjct: 68  MNNAFEWIVQENNGAVYTEDSYPYASGEGISPP--------------------------- 100
Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C       GA   G+V++P+ DE ++ A +A  GPV++A+DAS  S+  Y+ GV     
Sbjct: 101 -CTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR--NRVYYEPECNS 174
           C S  LDH VL+VGY  D     YW++KNSW T WG+EGYI++A+  N+   + E +S
Sbjct: 155 CVSEALDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           C S  LDH VL+VGY  D     YW++KNSW T WG+EGYI++A+   N C V   AS  
Sbjct: 155 CVSEALDHGVLLVGY-NDSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSA 212
Query: 232 LV 233
           +V
Sbjct: 213 VV 214

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 36/165 (21%)
Query: 1   MDQAFQYIKDNHG--IDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           MD AF +I +++G  + TE+SYPY                            V+      
Sbjct: 68  MDNAFNWIVNSNGGNVFTEASYPY----------------------------VSGNGEQP 99
Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C+    + GA    +VD+P+ DE  + A +A  GP++IA+DA+  SF  Y+ G+     
Sbjct: 100 QCQMNGHEIGAAITDHVDLPQ-DEDAIAAYLAENGPLAIAVDAT--SFMDYNGGILTS-- 154
Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           C S QLDH VL+VGY  D +   YW++KNSW+  WG++GYI++ +
Sbjct: 155 CTSEQLDHGVLLVGY-NDASNPPYWIIKNSWSNMWGEDGYIRIEK 198

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP 231
           C S QLDH VL+VGY  D +   YW++KNSW+  WG++GYI++ +   N C +  + S  
Sbjct: 155 CTSEQLDHGVLLVGY-NDASNPPYWIIKNSWSNMWGEDGYIRIEKGT-NQCLMNQAVSSA 212
Query: 232 LV 233
           +V
Sbjct: 213 VV 214

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 2   DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCR 61
           D AF+++  N GI ++++YPY  +                               D  C 
Sbjct: 69  DDAFRWVITNGGIASDANYPYTGV-------------------------------DGTCD 97
Query: 62  YKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS-EGVYYEPEC- 119
             +  +  +D GY ++P      L A      PVS+ I  S  SFQ Y+  G++    C 
Sbjct: 98  LNKPIAARID-GYTNVPNSSSALLDAVAKQ--PVSVNIYTSSTSFQLYTGPGIFAGSSCS 154
Query: 120 -NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            +   +DH VL+VGYG++    DYW+VKNSW T WG +GYI + RN
Sbjct: 155 DDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRN 200

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 71/161 (44%), Gaps = 41/161 (25%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           + QY+ DN G+ TE  YPYE                                    CR K
Sbjct: 71  SLQYVVDN-GVHTEREYPYEKKQG-------------------------------RCRAK 98
Query: 64  RAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
             K   V   GY  +P  DE  L  A+A   PVS+  D+  + FQFY  G+Y  P C  T
Sbjct: 99  DKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKGGIYEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
             DHAV  VGYG       Y L+KNSW   WG++GYI++ R
Sbjct: 156 NTDHAVTAVGYG-----KTYLLLKNSWGPNWGEKGYIRIKR 191

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
           YE  C  T  DHAV  VGYG       Y L+KNSW   WG++GYI++ R     +  CGV
Sbjct: 149 YEGPCG-TNTDHAVTAVGYG-----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
Query: 225 ASSASFPL 232
            +S+ FP+
Sbjct: 203 YTSSFFPI 210

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 73/162 (45%), Gaps = 41/162 (25%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A QY+  N GI     YPYE +                                  CR  
Sbjct: 71  ALQYVA-NSGIHLRQYYPYEGV-------------------------------QRQCRAS 98
Query: 64  RAKSGAVDR-GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
           +AK   V   G   +P  +E  L   +A I PVSI ++A  ++FQ Y  G++  P C  T
Sbjct: 99  QAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
            +DHAV  VGYG     NDY L+KNSW T WG+ GYI++ R 
Sbjct: 156 SIDHAVAAVGYG-----NDYILIKNSWGTGWGEGGYIRIKRG 192

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 35/161 (21%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           + QY+ +N G+ T   YPY+A              Y      K   +V +T         
Sbjct: 71  SLQYVANN-GVHTSKVYPYQAKQ------------YKCRATDKPGPKVKIT--------- 108
Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
                    GY  +P   E     A+A   P+S+ ++A  + FQ Y  GV+  P C  T+
Sbjct: 109 ---------GYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKSGVFDGP-CG-TK 156
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           LDHAV  VGYGT + G +Y ++KNSW   WG++GY+++ R 
Sbjct: 157 LDHAVTAVGYGTSD-GKNYIIIKNSWGPNWGEKGYMRLKRQ 196

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGVASSASFP 231
           T+LDHAV  VGYGT + G +Y ++KNSW   WG++GY+++ R   N +  CGV  S+ +P
Sbjct: 155 TKLDHAVTAVGYGTSD-GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
Query: 232 L 232
Sbjct: 214 F 214

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 37/163 (22%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A+  IK+  G++TE  Y Y+  M                                +C++ 
Sbjct: 71  AYSAIKNLGGLETEDDYSYQGHM-------------------------------QSCQFS 99
Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVY--YEPECNS 121
             K+    +  V++ + +E KL A +A  GP+S+AI+A     QFY  G+     P C+ 
Sbjct: 100 AEKAKVYIQDSVELSQ-NEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSP 156
Query: 122 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
             +DHAVL+VGYG   +   +W +KNSW T WG++GY  + R 
Sbjct: 157 WLIDHAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRG 198

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 169 EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
            P C+   +DHAVL+VGYG   +   +W +KNSW T WG++GY  + R     CGV + A
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSD-VPFWAIKNSWGTDWGEKGYYYLHRG-SGACGVNTMA 208
Query: 229 SFPLV 233
           S  +V
Sbjct: 209 SSAVV 213

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNST-QLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
           P+S++IDA  + F FYS G+Y    C+S   ++H VL+VGYG+ E+G DYW+ KNSW   
Sbjct: 137 PISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGED 193
Query: 153 WGDEGYIKMARN 164
           WG +GYI++ RN
Sbjct: 194 WGIDGYIRIQRN 205

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 166 VYYEPECNST-QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN---N 221
           +Y    C+S   ++H VL+VGYG+ E+G DYW+ KNSW   WG +GYI++ RN  N    
Sbjct: 154 IYDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGV 212
Query: 222 CGVASSASFPLV 233
           CG+   AS+P++
Sbjct: 213 CGMNYFASYPII 224

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 15/130 (11%)
Query: 53  VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
           V++  + C  KR       + YV IP+    K K A+  +GP+SI+I AS   F FY  G
Sbjct: 109 VSNLPETCNLKRCNERYTIKSYVSIPDD---KFKEALRYLGPISISIAAS-DDFAFYRGG 164
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMAR 163
            +Y+ EC +   +HAV++VGYG  +  N+         Y+++KNSW + WG+ GYI +  
Sbjct: 165 -FYDGECGAAP-NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLET 222
Query: 164 NRVYYEPECN 173
           +   Y+  C+
Sbjct: 223 DENGYKKTCS 232

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 13/79 (16%)
Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARN 217
           +Y+ EC +   +HAV++VGYG  +  N+         Y+++KNSW + WG+ GYI +  +
Sbjct: 165 FYDGECGAAP-NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETD 223
Query: 218 R---ENNCGVASSASFPLV 233
               +  C + + A  PL+
Sbjct: 224 ENGYKKTCSIGTEAYVPLL 242

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 53  VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
           V+   + C   R       + Y+ +P+    KLK A+  +GP+SI++  S   F FY EG
Sbjct: 107 VSDAPNLCNIDRCTEKYGIKNYLSVPDN---KLKEALRFLGPISISVAVS-DDFAFYKEG 162
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKM 161
           ++ + EC   QL+HAV++VG+G  E  N          Y+++KNSW   WG+ G+I +
Sbjct: 163 IF-DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARNR 218
           ++ EC   QL+HAV++VG+G  E  N          Y+++KNSW   WG+ G+I +  + 
Sbjct: 164 FDGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDE 222
Query: 219 E---NNCGVASSASFPLV 233
                 CG+ + A  PL+
Sbjct: 223 SGLMRKCGLGTDAFIPLI 240

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 53  VTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEG 112
           V+   + C   R       + Y+ +P+    KLK A+  +GP+SI++  S   F FY EG
Sbjct: 106 VSDAPNLCNIDRCTEKYGIKNYLSVPDN---KLKEALRFLGPISISVAVS-DDFAFYKEG 161
Query: 113 VYYEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKM 161
           ++ + EC   QL+HAV++VG+G  E  N          Y+++KNSW   WG+ G+I +
Sbjct: 162 IF-DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGND---------YWLVKNSWNTTWGDEGYIKMARNR 218
           ++ EC   QL+HAV++VG+G  E  N          Y+++KNSW   WG+ G+I +  + 
Sbjct: 163 FDGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDE 221
Query: 219 EN---NCGVASSASFPLV 233
                 CG+ + A  PL+
Sbjct: 222 SGLMRKCGLGTDAFIPLI 239

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGT 135
           +E  +K  +   GP+++A +  +  F  Y +G+Y+     +P       +HAVL+VGYGT
Sbjct: 332 NEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGT 390
Query: 136 DE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
           D  +G DYW+VKNSW T WG+ GY ++ R
Sbjct: 391 DSASGMDYWIVKNSWGTGWGENGYFRIRR 419

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
           +HAVL+VGYGTD  +G DYW+VKNSW T WG+ GY ++ R  +  C + S A
Sbjct: 380 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD-ECAIESIA 430

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY-----EPECNSTQLDHAVLVVGYGT 135
           +E  +K  +   GP+++A +  H  F  Y  G+Y+     +P       +HAVL+VGYG 
Sbjct: 331 NEALMKLELVKHGPMAVAFEV-HDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGK 389
Query: 136 DE-NGNDYWLVKNSWNTTWGDEGYIKMAR 163
           D   G DYW+VKNSW + WG+ GY ++ R
Sbjct: 390 DPVTGLDYWIVKNSWGSQWGESGYFRIRR 418

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
           +HAVL+VGYG D   G DYW+VKNSW + WG+ GY ++ R   + C + S A
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRG-TDECAIESIA 429

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ ++A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ ++A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ ++A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ + A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ + A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ + A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L+KNSW T W
Sbjct: 129 PVSVVLQAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGW 181
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 182 GENGYIRIKR 191

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R  
Sbjct: 141 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGT 193
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 194 GNSYGVCGLYTSSFYPV 210

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
           PVS+ ++A+ + FQ Y  G++  P  N  ++DHAV  VGYG +     Y L++NSW T W
Sbjct: 280 PVSVVLEAAGKDFQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIRNSWGTGW 332
Query: 154 GDEGYIKMAR 163
           G+ GYI++ R
Sbjct: 333 GENGYIRIKR 342

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 10/77 (12%)
Query: 159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 218
            ++ R  ++  P  N  ++DHAV  VGYG +     Y L++NSW T WG+ GYI++ R  
Sbjct: 292 FQLYRGGIFVGPCGN--KVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGT 344
Query: 219 ENN---CGVASSASFPL 232
            N+   CG+ +S+ +P+
Sbjct: 345 GNSYGVCGLYTSSFYPV 361

>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 42

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 193 NDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
           N YWLVKNSW   WG  GY+KMA++R N+CG+AS+AS+P V
Sbjct: 2   NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
           +E ++ A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG 
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 212
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
            YWLV NSWNT WGD G+ K+ R +
Sbjct: 213 PYWLVANSWNTDWGDNGFFKILRGQ 237

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 244

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
           +E ++ A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG 
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 212
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
            YWLV NSWNT WGD G+ K+ R +
Sbjct: 213 PYWLVGNSWNTDWGDNGFFKILRGQ 237

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRG-QDHCGIES 244

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
           +E ++ A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG 
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVS-GEIMGGHAIRILGWGV-ENGT 164
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
            YWLV NSWNT WGD G+ K+ R +
Sbjct: 165 PYWLVGNSWNTDWGDNGFFKILRGQ 189

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R ++ +CG+ S
Sbjct: 151 HAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQD-HCGIES 196

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY +         HA+ ++G+G  ENG  
Sbjct: 220 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 276
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 277 YWLVANSWNTDWGDNGFFKILRGQ 300

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 262 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 307

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG  
Sbjct: 159 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 215
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 216 YWLVANSWNTDWGDNGFFKILRGQ 239

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 201 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 246

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 178 DHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSA 228
           +HAVL+VGYGTD  +G DYW+VKNSW T WG+ GY ++ R  +  C + S A
Sbjct: 10  NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD-ECAIESIA 60

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY +         HA+ ++G+G  ENG  
Sbjct: 108 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 164
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 165 YWLVANSWNTDWGDNGFFKILRGQ 188

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 150 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 195

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG  
Sbjct: 157 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 213
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 214 YWLVANSWNTDWGDNGFFKILRGQ 237

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 199 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 244

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY           HA+ ++G+G  ENG  
Sbjct: 158 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-GEMMGGHAIRILGWGV-ENGTP 214
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 215 YWLVANSWNTDWGDNGFFKILRGQ 238

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 200 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 245

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 82  EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND 141
           E  + A +   GPV  A    +  F  Y  GVY +         HA+ ++G+G  ENG  
Sbjct: 163 EKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY-QHVTGEMMGGHAIRILGWGV-ENGTP 219
Query: 142 YWLVKNSWNTTWGDEGYIKMARNR 165
           YWLV NSWNT WGD G+ K+ R +
Sbjct: 220 YWLVANSWNTDWGDNGFFKILRGQ 243

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R  +++CG+ S
Sbjct: 205 HAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG-QDHCGIES 250

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A +Y+  N GI   S YPY+A                                   CR K
Sbjct: 71  ALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTCRAK 98
Query: 64  RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
           +     V   G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P C  T
Sbjct: 99  QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           ++DHAV  VGYG         L+KNSW T WG++GYI++ R
Sbjct: 156 KVDHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
           +E  C  T++DHAV  VGYG         L+KNSW T WG++GYI++ R   N    CG+
Sbjct: 149 FEGPCG-TKVDHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
Query: 225 ASSASFP 231
             S+ +P
Sbjct: 207 YKSSYYP 213

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           Y+ E       HA+ ++G+G  ENG  YWLV NSWN  WGD G+ K+ R  EN+CG+ S
Sbjct: 250 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 306

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           Y+ E       HA+ ++G+G  ENG  YWLV NSWN  WGD G+ K+ R  EN+CG+ S
Sbjct: 194 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 250

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           Y+ E       HA+ ++G+G  ENG  YWLV NSWN  WGD G+ K+ R  EN+CG+ S
Sbjct: 188 YKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG-ENHCGIES 244

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A +Y+  N GI   S YPY+A                                   CR K
Sbjct: 71  ALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTCRAK 98
Query: 64  RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
           +     V   G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P C  T
Sbjct: 99  QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIFEGP-CG-T 155
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           +++HAV  VGYG         L+KNSW T WG++GYI++ R
Sbjct: 156 KVEHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 195

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGV 224
           +E  C  T+++HAV  VGYG         L+KNSW T WG++GYI++ R   N    CG+
Sbjct: 149 FEGPCG-TKVEHAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
Query: 225 ASSASFP 231
             S+ +P
Sbjct: 207 YKSSYYP 213

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 12  HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVD 71
           HGI  E+   Y+A       F     C     CH   N      GD      R K     
Sbjct: 86  HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREK----- 140
Query: 72  RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVV 131
                        + A +   GP+S  I A+ +    Y+ G+Y E + ++T ++H V V 
Sbjct: 141 -------------MMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQ-DTTYINHVVSVA 185
Query: 132 GYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161
           G+G  + G +YW+V+NSW   WG+ G++++
Sbjct: 186 GWGISD-GTEYWIVRNSWGEPWGERGWLRI 214

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 173 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 214
           ++T ++H V V G+G  + G +YW+V+NSW   WG+ G++++
Sbjct: 174 DTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 214

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 81  DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGN 140
           DE  ++  +   GPV       ++ F  Y  G+Y       T   HA+ ++G+G  EN  
Sbjct: 158 DEKAIQKEIMKYGPVEAGFTV-YEDFLNYKSGIYKHIT-GETLGGHAIRIIGWGV-ENKA 214
Query: 141 DYWLVKNSWNTTWGDEGYIKMARNR 165
            YWL+ NSWN  WG+ GY ++ R R
Sbjct: 215 PYWLIANSWNEDWGENGYFRIVRGR 239

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS 229
           HA+ ++G+G  EN   YWL+ NSWN  WG+ GY ++ R R + C + S  +
Sbjct: 201 HAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRGR-DECSIESEVT 249

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 12  HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVD 71
           HGI  E+   Y+A       F     C     CH   N      GD      R K     
Sbjct: 121 HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREK----- 175
Query: 72  RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVV 131
                        + A +   GP+S  I A+ +    Y+ G+Y E + ++T ++H V V 
Sbjct: 176 -------------MMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQ-DTTYINHVVSVA 220
Query: 132 GYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161
           G+G  + G +YW+V+NSW   WG+ G++++
Sbjct: 221 GWGISD-GTEYWIVRNSWGEPWGERGWLRI 249

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 173 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 214
           ++T ++H V V G+G  + G +YW+V+NSW   WG+ G++++
Sbjct: 209 DTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 249

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 37/161 (22%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           A +Y+  N GI   S YPY+A                                   CR K
Sbjct: 177 ALEYVAKN-GIHLRSKYPYKAKQG-------------------------------TCRAK 204
Query: 64  RAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST 122
           +     V   G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P C  T
Sbjct: 205 QVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-C-GT 261
Query: 123 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           ++D AV  VGYG         L+KNSW T WG++GYI++ R
Sbjct: 262 KVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 301

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 158
           HAV +VGYG+ + G+DYW+V+NSW+TTWGD GY
Sbjct: 171 HAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY 211
           HAV +VGYG+ + G+DYW+V+NSW+TTWGD GY
Sbjct: 171 HAVNIVGYGSTQ-GDDYWIVRNSWDTTWGDSGY 202

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 35/160 (21%)
Query: 4   AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK 63
           + QY+  N GI   + YPY A          ++ C        R+NQV            
Sbjct: 71  SLQYVAQN-GIHLRAKYPYIAK---------QQTC--------RANQVG---------GP 103
Query: 64  RAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ 123
           + K+  V R    +   +E  L  A+A   PVS+ ++++ + FQ Y  G++ E  C  T+
Sbjct: 104 KVKTNGVGR----VQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIF-EGSC-GTK 156
Query: 124 LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           +DHAV  VGYG         L+KNSW   WG+ GYI++ R
Sbjct: 157 VDHAVTAVGYGKSGGKGYI-LIKNSWGPGWGENGYIRIRR 195

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
           +E  C  T++DHAV  VGYG         L+KNSW   WG+ GYI++ R   N+   CGV
Sbjct: 149 FEGSC-GTKVDHAVTAVGYGKSGGKGYI-LIKNSWGPGWGENGYIRIRRASGNSPGVCGV 206
Query: 225 ASSASFPL 232
             S+ +P+
Sbjct: 207 YRSSYYPI 214

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93  GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
           GP  +A D  ++ F  Y+ GVY+          HAV +VG+GT  NG  YW + NSWNT 
Sbjct: 251 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 307
Query: 153 WGDEGYIKMAR 163
           WG +GY  + R
Sbjct: 308 WGMDGYFLIRR 318

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
           HAV +VG+GT  NG  YW + NSWNT WG +GY  + R   + CG+    SA  PL 
Sbjct: 282 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 336

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93  GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
           GP  +A D  ++ F  Y+ GVY+          HAV +VG+GT  NG  YW + NSWNT 
Sbjct: 229 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 285
Query: 153 WGDEGYIKMAR 163
           WG +GY  + R
Sbjct: 286 WGMDGYFLIRR 296

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
           HAV +VG+GT  NG  YW + NSWNT WG +GY  + R   + CG+    SA  PL 
Sbjct: 260 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 314

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 93  GPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT 152
           GP  +A D  ++ F  Y+ GVY+          HAV +VG+GT  NG  YW + NSWNT 
Sbjct: 228 GPFEVAFDV-YEDFIAYNSGVYHHVS-GQYLGGHAVRLVGWGT-SNGVPYWKIANSWNTE 284
Query: 153 WGDEGYIKMAR 163
           WG +GY  + R
Sbjct: 285 WGMDGYFLIRR 295

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGV--ASSASFPLV 233
           HAV +VG+GT  NG  YW + NSWNT WG +GY  + R   + CG+    SA  PL 
Sbjct: 259 HAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYF-LIRRGSSECGIEDGGSAGIPLA 313

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 85  LKAAVATIGPVSIAIDASH-QSFQFYSEGVYYEPECNSTQLDHAVLVVGYG----TDENG 139
           +K  V   G V   I A +   ++F  + V  +  C     DHAV +VGYG    ++   
Sbjct: 159 IKTEVMNKGSVIAYIKAENVMGYEFSGKKV--QNLCGDDTADHAVNIVGYGNYVNSEGEK 216
Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLV 183
             YW+V+NSW   WGDEGY K+      Y P        H+V++
Sbjct: 217 KSYWIVRNSWGPYWGDEGYFKVDM----YGPTHCHFNFIHSVVI 256

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 172 CNSTQLDHAVLVVGYG----TDENGNDYWLVKNSWNTTWGDEGYIKM 214
           C     DHAV +VGYG    ++     YW+V+NSW   WGDEGY K+
Sbjct: 192 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 85  LKAAVATIGPVSIAIDASH-QSFQFYSEGVYYEPECNSTQLDHAVLVVGYG----TDENG 139
           +K  V   G V   I A +   ++F  + V  +  C     DHAV +VGYG    ++   
Sbjct: 160 IKTEVMNKGSVIAYIKAENVMGYEFSGKKV--KNLCGDDTADHAVNIVGYGNYVNSEGEK 217
Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLV 183
             YW+V+NSW   WGDEGY K+      Y P        H+V++
Sbjct: 218 KSYWIVRNSWGPYWGDEGYFKVDM----YGPTHCHFNFIHSVVI 257

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 172 CNSTQLDHAVLVVGYG----TDENGNDYWLVKNSWNTTWGDEGYIKM 214
           C     DHAV +VGYG    ++     YW+V+NSW   WGDEGY K+
Sbjct: 193 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 250 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 250 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 179 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 217
           HAV +VGY ++  G DYW+V+NSW+T WGD GY   A N
Sbjct: 170 HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	1e-81
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	2e-81
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-80
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	4e-80
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	2e-79
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	3e-79
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	4e-79
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	2e-77
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	7e-76
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	9e-75
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	1e-74
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	1e-74
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	9e-74
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	1e-73
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	2e-73
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	2e-73
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	3e-72
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	5e-72
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	2e-33
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	5e-72
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	3e-71
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	1e-70
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	1e-70
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	5e-70
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	9e-70
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	2e-69
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-69
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	3e-69
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	4e-69
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	3e-68
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	9e-68
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-58
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	3e-54
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-53
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	5e-52
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	8e-50
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	6e-49
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	1e-48
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-46
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	1e-44
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	2e-10
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	2e-10
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	2e-04
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	2e-04

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  242 bits (619), Expect = 1e-81
 Identities = 84/233 (36%), Positives = 108/233 (46%), Gaps = 85/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 68  MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           S  L+HAVL VGYG  + GN +W++KNSW                               
Sbjct: 157 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGE----------------------------- 186

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    WG++GYI MARN+ N CG+A+ ASFP +
Sbjct: 187 ------------------------NWGNKGYILMARNKNNACGIANLASFPKM 215

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  241 bits (618), Expect = 2e-81
 Identities = 88/233 (37%), Positives = 116/233 (49%), Gaps = 82/233 (35%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 70  MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 98

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP   E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 99  KYNPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 157

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           S  +DH VLVVGYG +                                            
Sbjct: 158 SEDMDHGVLVVGYGFE-------------------------------------------- 173

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                  T+ + N YWLVKNSW   WG  GY+KMA++R N+CG+AS+AS+P V
Sbjct: 174 ------STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  239 bits (613), Expect = 1e-80
 Identities = 63/232 (27%), Positives = 91/232 (39%), Gaps = 85/232 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
             QAF+YI+ N GI  E +YPY+                                 DD+C
Sbjct: 71  PSQAFEYIRYNKGIMGEDTYPYKGQ-------------------------------DDHC 99

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +++  K+ A  +   +I   DE  +  AVA   PVS A + ++  F  Y +G+Y    C+
Sbjct: 100 KFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCH 158

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
            T                                                     +++HA
Sbjct: 159 KT---------------------------------------------------PDKVNHA 167

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232
           VL VGYG  ENG  YW+VKNSW   WG  GY  + R + N CG+A+ AS+P+
Sbjct: 168 VLAVGYGE-ENGIPYWIVKNSWGPQWGMNGYFLIERGK-NMCGLAACASYPI 217

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  238 bits (609), Expect = 4e-80
 Identities = 81/233 (34%), Positives = 102/233 (43%), Gaps = 86/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 72  MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 100

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 101 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 159

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           +  ++H VLVVGYG   NG +YWLVKNSW                               
Sbjct: 160 TQNVNHGVLVVGYGD-LNGKEYWLVKNSWGH----------------------------- 189

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    +G+EGYI+MARN+ N+CG+AS  S+P +
Sbjct: 190 ------------------------NFGEEGYIRMARNKGNHCGIASFPSYPEI 218

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  240 bits (615), Expect = 2e-79
 Identities = 77/233 (33%), Positives = 93/233 (39%), Gaps = 86/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AF Y+  N GID+E +YPYE                                 D NC
Sbjct: 185 MNDAFTYVAQNGGIDSEGAYPYEMA-------------------------------DGNC 213

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y   +  A   GYV +   DE  L   VAT GPV++A DA    F  YS GVYY P C 
Sbjct: 214 HYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADD-PFGSYSGGVYYNPTCE 272

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           + +  HAVL+VGYG  ENG DYWLVKNSW                               
Sbjct: 273 TNKFTHAVLIVGYGN-ENGQDYWLVKNSWGD----------------------------- 302

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    WG +GY K+ARN  N+CG+A  AS P +
Sbjct: 303 ------------------------GWGLDGYFKIARNANNHCGIAGVASVPTL 331

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  239 bits (612), Expect = 3e-79
 Identities = 88/233 (37%), Positives = 116/233 (49%), Gaps = 82/233 (35%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AFQY++DN G+D+E SYPYEA                                +++C
Sbjct: 166 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESC 194

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y    S A D G+VDIP   E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+EP+C+
Sbjct: 195 KYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 253

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           S  +DH VLVVGYG +                                            
Sbjct: 254 SEDMDHGVLVVGYGFE-------------------------------------------- 269

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                  T+ + N YWLVKNSW   WG  GY+KMA++R N+CG+AS+AS+P V
Sbjct: 270 ------STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  239 bits (611), Expect = 4e-79
 Identities = 84/233 (36%), Positives = 108/233 (46%), Gaps = 85/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                  +++C
Sbjct: 167 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESC 195

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 196 MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 255

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           S  L+HAVL VGYG  + GN +W++KNSW                               
Sbjct: 256 SDNLNHAVLAVGYGI-QKGNKHWIIKNSWGE----------------------------- 285

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    WG++GYI MARN+ N CG+A+ ASFP +
Sbjct: 286 ------------------------NWGNKGYILMARNKNNACGIANLASFPKM 314

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  234 bits (600), Expect = 2e-77
 Identities = 81/233 (34%), Positives = 102/233 (43%), Gaps = 86/233 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQYI DN GID+++SYPY+AM                               D  C
Sbjct: 169 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKC 197

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +Y      A    Y ++P G E  LK AVA  GPVS+ +DA H SF  Y  GVYYEP C 
Sbjct: 198 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC- 256

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
           +  ++H VLVVGYG   NG +YWLVKNSW                               
Sbjct: 257 TQNVNHGVLVVGYGD-LNGKEYWLVKNSWGH----------------------------- 286

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    +G+EGYI+MARN+ N+CG+AS  S+P +
Sbjct: 287 ------------------------NFGEEGYIRMARNKGNHCGIASFPSYPEI 315

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  231 bits (591), Expect = 7e-76
 Identities = 76/233 (32%), Positives = 104/233 (44%), Gaps = 87/233 (37%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF YI  ++GI +ES+YPYEA                                 D C
Sbjct: 184 MDSAFSYIH-DYGIMSESAYPYEAQ-------------------------------GDYC 211

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R+  ++S     GY D+P GDE  L  AV   GPV++AIDA+    QFYS G++Y+  CN
Sbjct: 212 RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATD-ELQFYSGGLFYDQTCN 270

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
            + L+H VLVVGYG+ +NG DYW++KNSW +                             
Sbjct: 271 QSDLNHGVLVVGYGS-DNGQDYWILKNSWGS----------------------------- 300

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                    WG+ GY +  RN  NNCG+A++AS+P +
Sbjct: 301 ------------------------GWGESGYWRQVRNYGNNCGIATAASYPAL 329

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  225 bits (575), Expect = 9e-75
 Identities = 76/234 (32%), Positives = 98/234 (41%), Gaps = 85/234 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF++IK   GI TE++YPYEA                                D  C
Sbjct: 70  MDYAFEFIKQRGGITTEANYPYEAY-------------------------------DGTC 98

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
              +  + AV   G+ ++PE DE  L  AVA   PVS+AIDA    FQFYSEGV+    C
Sbjct: 99  DVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-C 156

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDH 179
             T+LDH V +VGYGT  +G  YW VKNSW   WG++GYI+M R                
Sbjct: 157 -GTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERG--------------- 200

Query: 180 AVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                                ++E  CG+A  AS+P+ 
Sbjct: 201 -----------------------------------ISDKEGLCGIAMEASYPIK 219

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  224 bits (574), Expect = 1e-74
 Identities = 72/234 (30%), Positives = 99/234 (42%), Gaps = 86/234 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQY+ D+ GI +E +YPY A                                D+ C
Sbjct: 76  MNDAFQYVLDSGGICSEDAYPYLAR-------------------------------DEEC 104

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           R +  +      G+ D+P   E  +KAA+A   PVSIAI+A    FQFY EGV ++  C 
Sbjct: 105 RAQSCEKVVKILGFKDVPRRSEAAMKAALAK-SPVSIAIEADQMPFQFYHEGV-FDASC- 161

Query: 121 STQLDHAVLVVGYGTD-ENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDH 179
            T LDH VL+VGYGTD E+  D+W++KNSW T WG +GY+ MA +               
Sbjct: 162 GTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMH--------------- 206

Query: 180 AVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                               +  E  CG+   ASFP++
Sbjct: 207 ------------------------------------KGEEGQCGLLLDASFPVM 224

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  227 bits (581), Expect = 1e-74
 Identities = 69/233 (29%), Positives = 95/233 (40%), Gaps = 87/233 (37%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ A+QY+K   G++TESSYPY A+                               +  C
Sbjct: 161 MENAYQYLK-QFGLETESSYPYTAV-------------------------------EGQC 188

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           RY +    A   G+  +  G E +LK  V   GP ++A+D     F  Y  G+Y    C+
Sbjct: 189 RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES-DFMMYRSGIYQSQTCS 247

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
             +++HAVL VGYGT + G DYW+VKNSW                               
Sbjct: 248 PLRVNHAVLAVGYGT-QGGTDYWIVKNSWGL----------------------------- 277

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                   +WG+ GYI+M RNR N CG+AS AS P+V
Sbjct: 278 ------------------------SWGERGYIRMVRNRGNMCGIASLASLPMV 306

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  221 bits (567), Expect = 9e-74
 Identities = 54/233 (23%), Positives = 83/233 (35%), Gaps = 87/233 (37%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A+  IK+  G++TE  Y Y+                                   +C
Sbjct: 68  PSNAYSAIKNLGGLETEDDYSYQGH-------------------------------MQSC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           ++   K+    +  V++   +E KL A +A  GP+S+AI+A     QFY  G+       
Sbjct: 97  QFSAEKAKVYIQDSVELS-QNEQKLAAWLAKRGPISVAINAF--GMQFYRHGISRP---- 149

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
                                                            P C+   +DHA
Sbjct: 150 -----------------------------------------------LRPLCSPWLIDHA 162

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
           VL+VGYG   +   +W +KNSW T WG++GY  + R     CGV + AS  +V
Sbjct: 163 VLLVGYGQ-RSDVPFWAIKNSWGTDWGEKGYYYLHRGS-GACGVNTMASSAVV 213

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  222 bits (567), Expect = 1e-73
 Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 35/172 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQ+I +N GI++E +YPY                                  D  C
Sbjct: 70  MNPAFQFIVNNGGINSEETYPYRGQ-------------------------------DGIC 98

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
                        Y ++P  +E  L+ AVA   PVS+ +DA+ + FQ Y  G++    C 
Sbjct: 99  NSTVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS-C- 155

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
           +   +HA+ VVGYGT EN  D+W+VKNSW   WG+ GYI+  RN    + +C
Sbjct: 156 NISANHALTVVGYGT-ENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKC 206

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  221 bits (566), Expect = 2e-73
 Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 37/173 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A +Y+  N GI   S YPY+A                                   C
Sbjct: 68  PPYALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTC 95

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R K+     V   G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P C
Sbjct: 96  RAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-C 153

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             T++DHAV  VGYG    G  Y L+KNSW T WG++GYI++ R        C
Sbjct: 154 -GTKVDHAVTAVGYGK-SGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVC 204

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score =  221 bits (565), Expect = 2e-73
 Identities = 69/233 (29%), Positives = 98/233 (42%), Gaps = 87/233 (37%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M   FQ+I +N GI+TE++YPY A                                +  C
Sbjct: 70  MTDGFQFIINNGGINTEANYPYTAE-------------------------------EGQC 98

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
                +   V    Y ++P  +E+ L+ AVA   PVS+A++A+  +FQ YS G++  P C
Sbjct: 99  NLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPVSVALEAAGYNFQHYSSGIFTGP-C 156

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDH 179
             T +DHAV +VGYGT E G DYW+VKNSW TTWG+EGY+++ RN               
Sbjct: 157 -GTAVDHAVTIVGYGT-EGGIDYWIVKNSWGTTWGEEGYMRIQRN--------------- 199

Query: 180 AVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232
                                                     CG+A  AS+P+
Sbjct: 200 ------------------------------------VGGVGQCGIAKKASYPV 216

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  218 bits (557), Expect = 3e-72
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 36/172 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQYI  N GIDT+ +YPY A+                                 +C
Sbjct: 68  MNNAFQYIITNGGIDTQQNYPYSAV-------------------------------QGSC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +  R +  +++ G+  +   +E  L++AVA+  PVS+ ++A+   FQ YS G++  P   
Sbjct: 97  KPYRLRVVSIN-GFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP--C 152

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
            T  +H V++VGYGT ++G +YW+V+NSW   WG++GYI M RN       C
Sbjct: 153 GTAQNHGVVIVGYGT-QSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLC 203

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  219 bits (560), Expect = 5e-72
 Identities = 65/176 (36%), Positives = 87/176 (49%), Gaps = 38/176 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           MD AF+YIK+N G+ TE++YPY A                                   C
Sbjct: 72  MDNAFEYIKNNGGLITEAAYPYRAA-------------------------------RGTC 100

Query: 61  RYKRAKS----GAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
              RA           G+ D+P   E  L  AVA   PVS+A++AS ++F FYSEGV+  
Sbjct: 101 NVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTG 159

Query: 117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             C  T+LDH V VVGYG  E+G  YW VKNSW  +WG++GYI++ ++       C
Sbjct: 160 E-C-GTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLC 213

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  120 bits (302), Expect = 2e-33
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN---CGV 224
           +  EC  T+LDH V VVGYG  E+G  YW VKNSW  +WG++GYI++ ++   +   CG+
Sbjct: 157 FTGEC-GTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215

Query: 225 ASSASFPLV 233
           A  AS+P+ 
Sbjct: 216 AMEASYPVK 224

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score =  217 bits (556), Expect = 5e-72
 Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           + +  +YI+ N G+  ES Y Y A                                + +C
Sbjct: 76  IPRGIEYIQHN-GVVQESYYRYVAR-------------------------------EQSC 103

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVA-TIGPVSIAIDASH-QSFQFYSEGVYYEPE 118
           R   A+       Y  I   +  K++ A+A T   +++ I      +F+ Y      + +
Sbjct: 104 RRPNAQ-RFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRD 162

Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                  HAV +VGY     G DYW+V+NSW+T WGD GY   A N 
Sbjct: 163 NGYQPNYHAVNIVGYSN-AQGVDYWIVRNSWDTNWGDNGYGYFAANI 208

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  219 bits (559), Expect = 3e-71
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 36/167 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           + +  +YI+ N G+  ES Y Y A                                + +C
Sbjct: 156 IPRGIEYIQHN-GVVQESYYRYVAR-------------------------------EQSC 183

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVA-TIGPVSIAIDASH-QSFQFYSEGVYYEPE 118
           R   A+   +   Y  I   +  K++ A+A T   +++ I      +F+ Y      + +
Sbjct: 184 RRPNAQRFGIS-NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRD 242

Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                  HAV +VGY     G DYW+V+NSW+T WGD GY   A N 
Sbjct: 243 NGYQPNYHAVNIVGYSN-AQGVDYWIVRNSWDTNWGDNGYGYFAANI 288

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  215 bits (550), Expect = 1e-70
 Identities = 57/241 (23%), Positives = 87/241 (36%), Gaps = 93/241 (38%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
             Q+F+++  + GI +E+ YPY+A                                D  C
Sbjct: 69  HYQSFEWVVKHGGIASEADYPYKAR-------------------------------DGKC 97

Query: 61  RYKRAKSGAVDRGY-------VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGV 113
           +    +       Y              E  L++ V    P+S++IDA    F FYS G+
Sbjct: 98  KANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLE-QPISVSIDAK--DFHFYSGGI 154

Query: 114 YYEPECNSTQ-LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
           Y    C+S   ++H VL+VGYG+ E+G DYW+ KNSW   WG +GYI++ RN        
Sbjct: 155 YDGGNCSSPYGINHFVLIVGYGS-EDGVDYWIAKNSWGEDWGIDGYIRIQRNT------- 206

Query: 173 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232
                                                       N    CG+   AS+P+
Sbjct: 207 -------------------------------------------GNLLGVCGMNYFASYPI 223

Query: 233 V 233
           +
Sbjct: 224 I 224

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  215 bits (550), Expect = 1e-70
 Identities = 52/236 (22%), Positives = 83/236 (35%), Gaps = 83/236 (35%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           +  AF  + D  G+ ++  YPY + +                               + C
Sbjct: 87  ITNAFDDMIDLGGLCSQDDYPYVSNL------------------------------PETC 116

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             KR       + YV IP+      K A+  +GP+SI+I AS   F FY  G  Y+ EC 
Sbjct: 117 NLKRCNERYTIKSYVSIPDDK---FKEALRYLGPISISIAASD-DFAFYRGGF-YDGEC- 170

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
               +HAV++VGYG  +  N+                                       
Sbjct: 171 GAAPNHAVILVGYGMKDIYNE--------------------------------------- 191

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV 233
                         Y+++KNSW + WG+ GYI +  +    +  C + + A  PL+
Sbjct: 192 -----DTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  213 bits (545), Expect = 5e-70
 Identities = 50/236 (21%), Positives = 85/236 (36%), Gaps = 83/236 (35%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           ++ AF+ + +  GI  +  YPY +                                 + C
Sbjct: 85  INNAFEDMIELGGICPDGDYPYVSDA------------------------------PNLC 114

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
              R       + Y+ +P+     LK A+  +GP+SI++  S   F FY EG+ ++ EC 
Sbjct: 115 NIDRCTEKYGIKNYLSVPDNK---LKEALRFLGPISISVAVSD-DFAFYKEGI-FDGEC- 168

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
             QL+HAV++VG+G  E  N                                        
Sbjct: 169 GDQLNHAVMLVGFGMKEIVN---------------------------------------- 188

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN---NCGVASSASFPLV 233
                       + Y+++KNSW   WG+ G+I +  +       CG+ + A  PL+
Sbjct: 189 ----PLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  211 bits (541), Expect = 9e-70
 Identities = 56/173 (32%), Positives = 74/173 (42%), Gaps = 41/173 (23%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A QY+  N GI     YPYE +                                  C
Sbjct: 68  PLYALQYVA-NSGIHLRQYYPYEGV-------------------------------QRQC 95

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R  +AK   V   G   +P  +E  L   +A I PVSI ++A  ++FQ Y  G++  P C
Sbjct: 96  RASQAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIVVEAKGRAFQNYRGGIFAGP-C 153

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             T +DHAV  VGYG D     Y L+KNSW T WG+ GYI++ R     +  C
Sbjct: 154 -GTSIDHAVAAVGYGND-----YILIKNSWGTGWGEGGYIRIKRGSGNPQGAC 200

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  211 bits (539), Expect = 2e-69
 Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 41/173 (23%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A Q +   +GI   ++YPYE +                                  C
Sbjct: 68  PWSALQLVA-QYGIHYRNTYPYEGV-------------------------------QRYC 95

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R +     A    G   +   +E  L  ++A   PVS+ ++A+ + FQ Y  G++  P C
Sbjct: 96  RSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-C 153

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
              ++DHAV  VGYG +     Y L+KNSW T WG+ GYI++ R        C
Sbjct: 154 -GNKVDHAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRGTGNSYGVC 200

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  211 bits (539), Expect = 2e-69
 Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 37/173 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              + QY+ +N G+ T   YPY+A                                   C
Sbjct: 68  QTTSLQYVANN-GVHTSKVYPYQAK-------------------------------QYKC 95

Query: 61  R-YKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R   +        GY  +P   E     A+A   P+S+ ++A  + FQ Y  GV+  P C
Sbjct: 96  RATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP-C 153

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             T+LDHAV  VGYGT  +G +Y ++KNSW   WG++GY+++ R     +  C
Sbjct: 154 -GTKLDHAVTAVGYGT-SDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTC 204

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  210 bits (538), Expect = 3e-69
 Identities = 63/233 (27%), Positives = 82/233 (35%), Gaps = 91/233 (39%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              + QY+ DN G+ TE  YPYE                                    C
Sbjct: 68  QTTSLQYVVDN-GVHTEREYPYEKK-------------------------------QGRC 95

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R K  K   V   GY  +P  DE  L  A+A   PVS+  D+  + FQFY  G+Y  P C
Sbjct: 96  RAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP-C 153

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDH 179
             T  DHAV  VGYG       Y L+KNSW   WG++GYI++ R                
Sbjct: 154 -GTNTDHAVTAVGYGKT-----YLLLKNSWGPNWGEKGYIRIKRA--------------- 192

Query: 180 AVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232
                                              +   +  CGV +S+ FP+
Sbjct: 193 -----------------------------------SGRSKGTCGVYTSSFFPI 210

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  212 bits (541), Expect = 4e-69
 Identities = 46/243 (18%), Positives = 71/243 (29%), Gaps = 73/243 (30%)

Query: 1   MDQAF-QYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDN 59
               F Q I+D   +  ES+YPY  +                  C K  +       +  
Sbjct: 79  SPMEFLQIIEDYGFLPAESNYPYNYVKVGEQ-------------CPKVEDHWMNLWDNGK 125

Query: 60  CRYKRAKSGAVD---------RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS 110
             + + +  ++D           + D  +     +K  V   G V   I A +     +S
Sbjct: 126 ILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFS 185

Query: 111 EGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEP 170
            G   +  C     DHAV +VGYG   N                                
Sbjct: 186 -GKKVKNLCGDDTADHAVNIVGYGNYVN-------------------------------- 212

Query: 171 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF 230
                            ++     YW+V+NSW   WGDEGY K+      +C      S 
Sbjct: 213 -----------------SEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSV 255

Query: 231 PLV 233
            + 
Sbjct: 256 VIF 258

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  211 bits (540), Expect = 3e-68
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 37/173 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A +Y+  N GI   S YPY+A                                   C
Sbjct: 174 PPYALEYVAKN-GIHLRSKYPYKAK-------------------------------QGTC 201

Query: 61  RYKRAKSGAV-DRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC 119
           R K+     V   G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P C
Sbjct: 202 RAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-C 259

Query: 120 NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             T++D AV  VGYG    G  Y L+KNSW T WG++GYI++ R        C
Sbjct: 260 -GTKVDGAVTAVGYGK-SGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVC 310

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  206 bits (528), Expect = 9e-68
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 36/167 (21%)

Query: 1   MDQAFQYI--KDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDD 58
           M+ AF++I  ++N  + TE SYPY +                                  
Sbjct: 68  MNNAFEWIVQENNGAVYTEDSYPYAS----------------------------GEGISP 99

Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
            C       GA   G+V++P+ DE ++ A +A  GPV++A+DAS  S+  Y+ GV     
Sbjct: 100 PCTTSGHTVGATITGHVELPQ-DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TS 154

Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           C S QLDH VL+VGY        YW++KNSW T WG+EGYI++A+  
Sbjct: 155 CVSEQLDHGVLLVGYND-SAAVPYWIIKNSWTTQWGEEGYIRIAKGS 200

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  190 bits (484), Expect = 1e-58
 Identities = 46/238 (19%), Positives = 73/238 (30%), Gaps = 86/238 (36%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
                     + G+  E+ +PY                                  D  C
Sbjct: 279 PYLIAGKYAQDFGLVEEACFPYTGT-------------------------------DSPC 307

Query: 61  RYKRAKSGAVDRGYVDIP----EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
           + K          Y  +       +E  +K  +   GP+++A +  +  F  Y +G+Y+ 
Sbjct: 308 KMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHH 366

Query: 117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQ 176
                                                               +P      
Sbjct: 367 TGLR------------------------------------------------DPFNPFEL 378

Query: 177 LDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
            +HAVL+VGYGTD  +G DYW+VKNSW T WG+ GY ++ R   + C + S A     
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGT-DECAIESIAVAATP 435

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  172 bits (438), Expect = 3e-54
 Identities = 59/233 (25%), Positives = 85/233 (36%), Gaps = 93/233 (39%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
              A+QYI +N GIDT+++YPY+A+                                  C
Sbjct: 68  FVFAYQYIINNGGIDTQANYPYKAV-------------------------------QGPC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           +           GY  +P  +E  LK AVA + P ++AIDAS   FQ YS G++  P   
Sbjct: 97  QAA--SKVVSIDGYNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCG- 152

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHA 180
            T+L+H V +VGY       +YW+V+NSW   WG++GYI+M R                 
Sbjct: 153 -TKLNHGVTIVGYQA-----NYWIVRNSWGRYWGEKGYIRMLRV---------------- 190

Query: 181 VLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                                                    CG+A    +P  
Sbjct: 191 ------------------------------------GGCGLCGIARLPYYPTK 207

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  172 bits (438), Expect = 1e-53
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 22/165 (13%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
               + Y    HGI  E+   Y+A                   C K +   T     +  
Sbjct: 111 DLSVWDYAH-QHGIPDETCNNYQAKDQ---------------ECDKFNQCGTCNEFKECH 154

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
             +      V  G      G E K+ A +   GP+S  I A  +    Y+ G+Y E +  
Sbjct: 155 AIRNYTLWRV--GDYGSLSGRE-KMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQD- 209

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           +T ++H V V G+G   +G +YW+V+NSW   WG+ G++++  + 
Sbjct: 210 TTYINHVVSVAGWGI-SDGTEYWIVRNSWGEPWGERGWLRIVTST 253

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  170 bits (432), Expect = 5e-52
 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
            D+A+ Y   + G+ ++   PY           F    +     +              C
Sbjct: 145 PDRAWAYFS-STGLVSDYCQPYP----------FPHCSHHSKSKNGYPPCSQFNFDTPKC 193

Query: 61  RYKRAKSGAVD---RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP 117
            Y            R +       E      +   GP  +A D  ++ F  Y+ GVY+  
Sbjct: 194 DYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDV-YEDFIAYNSGVYHHV 252

Query: 118 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                   HAV +VG+GT  NG  YW + NSWNT WG +GY  + R  
Sbjct: 253 SG-QYLGGHAVRLVGWGT-SNGVPYWKIANSWNTEWGMDGYFLIRRGS 298

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  164 bits (417), Expect = 8e-50
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
             +A+ +     G+ +   Y         P  +     ++       + +         C
Sbjct: 139 PAEAWNFWTR-KGLVSGGLYESHVGC--RPYSIPPCEHHVNGSRPPCTGEGDTPKCSKIC 195

Query: 61  RYKRAKSGAVDRGYVDIP---EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP 117
               + +   D+ Y          E  + A +   GPV  A    +  F  Y  GVY   
Sbjct: 196 EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHV 254

Query: 118 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                   HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R +
Sbjct: 255 -TGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 300

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  160 bits (406), Expect = 6e-49
 Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 8/168 (4%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           +  A+ Y     GI T SS    A     P                     T       C
Sbjct: 77  LGPAWDYWVKE-GIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPR-CKQTC 134

Query: 61  RYKRAKSGAVDRGYVDIP---EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP 117
           + K       D+         + DE  ++  +   GPV       ++ F  Y  G+Y   
Sbjct: 135 QKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTV-YEDFLNYKSGIYKHI 193

Query: 118 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
               T   HA+ ++G+G  EN   YWL+ NSWN  WG+ GY ++ R R
Sbjct: 194 -TGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRGR 239

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  159 bits (405), Expect = 1e-48
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
             +A+ +     G+ +   Y         P  +     ++       + +         C
Sbjct: 82  PAEAWNFWTR-KGLVSGGLYESHV--GCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKIC 138

Query: 61  RYKRAKSGAVDRGYVDIP---EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP 117
               + +   D+ Y          E  + A +   GPV  A    +  F  Y  GVY   
Sbjct: 139 EPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHV 197

Query: 118 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                   HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R +
Sbjct: 198 -TGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 243

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  155 bits (392), Expect = 2e-46
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 24/170 (14%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M +    +    G+  E  +PY                                +     
Sbjct: 125 MIRDGIKVLHKLGVCPEKEWPYGDTP---------------ADPRTEEFPPGAPASKKPS 169

Query: 61  RYKRAKSGAVD-RGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP-- 117
                 +       Y  +   D   LKA +A   P        + S+   +      P  
Sbjct: 170 DQCYKDAQNYKITEYSRVA-QDIDHLKACLAVGSPFVFGFSV-YNSWVGNNSLPVRIPLP 227

Query: 118 -ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRV 166
            + ++ +  HAVL VGY   ++   ++ ++NSW    G++GY  M    +
Sbjct: 228 TKNDTLEGGHAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYFWMPYEYI 274

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  148 bits (374), Expect = 1e-44
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 37/175 (21%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
            D AF+++  N GI ++++YPY  +                               D  C
Sbjct: 68  ADDAFRWVITNGGIASDANYPYTGV-------------------------------DGTC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFY-SEGVYYEPEC 119
              +  +  +D GY ++P      L  AVA   PVS+ I  S  SFQ Y   G++    C
Sbjct: 97  DLNKPIAARID-GYTNVP-NSSSALLDAVAK-QPVSVNIYTSSTSFQLYTGPGIFAGSSC 153

Query: 120 NS--TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
           +     +DH VL+VGYG++    DYW+VKNSW T WG +GYI + RN    +  C
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVC 208

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 10/124 (8%)

Query: 94  PVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTW 153
            ++   D S   F    +GV   P+      +    + G             K       
Sbjct: 243 TIAWGSDVSESGF--TRDGVAVMPD-----DEKVQELSGSDMAHWLKLKPEEKKLNTKPQ 295

Query: 154 GDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK 213
             +   +  R   Y   +   T  DH + + G   D+ GN+Y++VKNSW T     G   
Sbjct: 296 PQKWCTQAERQLAY---DNYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWY 352

Query: 214 MARN 217
            ++ 
Sbjct: 353 ASKA 356

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 7/117 (5%)

Query: 52  TVTSGDDNCRYKRAKSGAVDR----GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQ 107
           T+  G D       + G           ++   D             ++          Q
Sbjct: 243 TIAWGSDVSESGFTRDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQ 302

Query: 108 FYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN 164
              +  Y   +   T  DH + + G   D+ GN+Y++VKNSW T     G    ++ 
Sbjct: 303 AERQLAY---DNYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASKA 356

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Length = 457

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 122 TQLDHAVLVVGYGTDENGND--YWLVKNSWNTTWGDEGYIKMARN 164
           + +  A+L+ G   DE       + V+NSW    G +G   M + 
Sbjct: 369 SLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK 413

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Length = 457

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 175 TQLDHAVLVVGYGTDENGND--YWLVKNSWNTTWGDEGYIKMARN 217
           + +  A+L+ G   DE       + V+NSW    G +G   M + 
Sbjct: 369 SLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.98
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.97
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.96
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.79
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.67
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.65
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.42
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.3
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.29
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.27
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.26
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.25
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.25
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.24
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.24
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.19
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.19
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.18
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.17
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.15
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.1
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.1
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.08
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.07
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	98.97
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	98.91
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	98.84
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	98.74
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	98.72
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	98.72
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	98.69
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	98.66
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	98.66
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	98.65
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	98.65
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	98.65
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	98.64
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	98.63
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	98.63
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	98.63
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	98.62
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	98.59
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	98.59
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	98.47
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	98.44
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	98.39
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	98.2
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	98.2
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	98.18
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	87.59
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	86.97
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	84.21

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=3.7e-40  Score=272.90  Aligned_cols=147  Identities=56%  Similarity=1.076  Sum_probs=126.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++++||++|++|||++.                               ++.|........+++.+|..++..+
T Consensus        69 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~~  117 (215)
T 3kwz_A           69 TNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESCMYNPTGKAAKCRGYREIPEGN  117 (215)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCCEEECCTTC
T ss_pred             HHHHHHHHHhCCccccccCCCccC-------------------------------CCccccCCCCceeEecceEEeCCCC
Confidence            579999976669999999999987                               5667766656668899999998779


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++..++|+.|++|||.++.|.....+|||+|||||+ +                        
T Consensus       118 ~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~~HaV~iVGyg~-~------------------------  172 (215)
T 3kwz_A          118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-Q------------------------  172 (215)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCCChhhCEEEEEEEec-c------------------------
Confidence            999999999999999999995579999999999988886666778888888876 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   ++.+|||||||||++|||+|||||.|+.+|+|||++.++||+|
T Consensus       173 -----------------------------~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          173 -----------------------------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             -----------------------------CCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence                                         3456777778889999999999999997689999999999986

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=1.9e-39  Score=269.60  Aligned_cols=150  Identities=58%  Similarity=1.127  Sum_probs=125.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++++||++|++|||.+.                               ++.|........+++.+|..++. +
T Consensus        71 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~-~  118 (220)
T 2xu3_A           71 DYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESCKYNPKYSVANDTGFVDIPK-Q  118 (220)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCSEEEECCS-C
T ss_pred             HHHHHHHHHhCCcccccccCCccc-------------------------------CcCccCCCCCcceeeeeEEEeCC-C
Confidence            579999965679999999999987                               45666554455688999999976 9


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++..++|++|++|||.++.|.....+|||+|||||++.                        
T Consensus       119 ~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~------------------------  174 (220)
T 2xu3_A          119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES------------------------  174 (220)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEECC------------------------
T ss_pred             HHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCCCCCeEEEEEEcCCcc------------------------
Confidence            99999999999999999999546899999999987778755678888888888510                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                +++++.+|||||||||++|||+|||||.|+.+|+|||++.++||++
T Consensus       175 --------------------------~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          175 --------------------------TESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             --------------------------CSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             --------------------------ccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence                                      0124678888888889999999999999996689999999999986

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=1.7e-39  Score=269.45  Aligned_cols=146  Identities=55%  Similarity=1.049  Sum_probs=125.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++++||++|++|||++.                               ++.|........+++.+|..++..+
T Consensus        73 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~~~~~~  121 (218)
T 3ovx_A           73 TTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKCQYDSKYRAATCSKYTELPYGR  121 (218)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCEEEECCTTC
T ss_pred             HHHHHHHHHhCCcCcccccCccCC-------------------------------CCcccCCCccceeeeccEEEeCCCC
Confidence            579999976689999999999987                               5667766666678899999998779


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++..++|++|++|||..+.| ....+|||+|||||+ +                        
T Consensus       122 ~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~-~~~~~HaV~iVGyg~-~------------------------  175 (218)
T 3ovx_A          122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYGD-L------------------------  175 (218)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTC-CSCCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCC-CcccCcEEEEEEEec-c------------------------
Confidence            99999999999999999999666899999999998888 356778888888876 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   ++.+|||||||||++|||+|||||.|+..|+|||++.++||+|
T Consensus       176 -----------------------------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          176 -----------------------------NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             -----------------------------CCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence                                         3456777778889999999999999996689999999999986

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=2.9e-39  Score=281.48  Aligned_cols=148  Identities=57%  Similarity=1.077  Sum_probs=125.0

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|+++++||++|++|||.+.                               ++.|........+++.+|..++..
T Consensus       167 ~~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~  215 (314)
T 1by8_A          167 MTNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESCMYNPTGKAAKCRGYREIPEG  215 (314)
T ss_dssp             SHHHHHHHHHTTCBCBTTTSCCCSS-------------------------------CCCCCCCGGGCCBCCSCEEECCSS
T ss_pred             HHHHHHHHHHcCCcCcHhhCCCCCC-------------------------------CCCcCCCCccceeEECcEEEecCC
Confidence            4689999976789999999999987                               556665444456788999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+|+|++..++|++|++|||.++.|....++|||+|||||+                         
T Consensus       216 ~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~-------------------------  270 (314)
T 1by8_A          216 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-------------------------  270 (314)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCTTCCSSCCCEEEEEEEEEE-------------------------
T ss_pred             CHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCCCCCCCCCCeEEEEEEEec-------------------------
Confidence            9999999999999999999995478999999999887786545677777777765                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                  + ++.+|||||||||++|||+|||||.|+..|.|||++.++||+|
T Consensus       271 ----------------------------~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  314 (314)
T 1by8_A          271 ----------------------------Q-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  314 (314)
T ss_dssp             ----------------------------E-TTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEEECC
T ss_pred             ----------------------------c-CCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEEeeC
Confidence                                        2 4567888888889999999999999996589999999999986

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=4.8e-39  Score=281.29  Aligned_cols=146  Identities=53%  Similarity=1.066  Sum_probs=126.0

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|++++ ||++|++|||++.                               ++.|........+++.+|..++..
T Consensus       184 ~~~a~~yi~~~-Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~  231 (329)
T 3qt4_A          184 MDSAFSYIHDY-GIMSESAYPYEAQ-------------------------------GDYCRFDSSQSVTTLSGYYDLPSG  231 (329)
T ss_dssp             HHHHHHHHHHS-CBCBTTTSCCCSS-------------------------------CCCCCCCGGGCCBCCSEEEECCTT
T ss_pred             hhHHHHHHHHc-CCCcHHHeeeecC-------------------------------CCCCCCCcccceEEeceEEEecCC
Confidence            35799999876 9999999999987                               566776666667899999999878


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+|+|++. .+|++|++|||..+.|....++|||+|||||+ +                       
T Consensus       232 ~e~~lk~al~~~GPV~v~i~a~-~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~-~-----------------------  286 (329)
T 3qt4_A          232 DENSLADAVGQAGPVAVAIDAT-DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS-D-----------------------  286 (329)
T ss_dssp             CHHHHHHHHHHTCCEEEEECCC-GGGTTEEEEEECCSSCCSSCCCEEEEEEEEEE-E-----------------------
T ss_pred             CHHHHHHHHHhCCCEEEEEecC-hhhhhccCceeecCCCCCCcCCEEEEEEEEEe-e-----------------------
Confidence            9999999999999999999995 59999999999988886556777777777776 2                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++||++|||||.|+..|.|||++.++||+|
T Consensus       287 ------------------------------~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~yp~v  329 (329)
T 3qt4_A          287 ------------------------------NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL  329 (329)
T ss_dssp             ------------------------------TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCEEEEC
T ss_pred             ------------------------------CCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCceeEeeC
Confidence                                          3567777888889999999999999996689999999999986

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=6.5e-39  Score=280.88  Aligned_cols=147  Identities=52%  Similarity=0.994  Sum_probs=126.9

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|++++.||++|++|||++.                               ++.|........+++.+|..++..
T Consensus       185 ~~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~  233 (331)
T 3qj3_A          185 MNDAFTYVAQNGGIDSEGAYPYEMA-------------------------------DGNCHYDPNQVAARLSGYVYLSGP  233 (331)
T ss_dssp             HHHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCTTSEEECCSEEEEESSC
T ss_pred             HHHHHHHHHHcCCcCcccccCccCC-------------------------------CCCCCCCcccceeEeeEEEEeCCC
Confidence            3579999987669999999999987                               567777666677899999999878


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+|+|++.. +|+.|++|||..+.|....++|||+|||||+ +                       
T Consensus       234 ~e~~lk~al~~~GPV~v~i~a~~-~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~-~-----------------------  288 (331)
T 3qj3_A          234 DENMLADMVATKGPVAVAFDADD-PFGSYSGGVYYNPTCETNKFTHAVLIVGYGN-E-----------------------  288 (331)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCCT-TGGGEEEEEECCTTCCSSCCCEEEEEEEEEE-E-----------------------
T ss_pred             CHHHHHHHHHhCCCEEEEEEccc-ccccccCceEeCCCCCCCcCCEEEEEEEEec-c-----------------------
Confidence            99999999999999999999954 4999999999988886556777777777776 2                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++|||+|||||.|+..|.|||++.++||+|
T Consensus       289 ------------------------------~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~v  331 (331)
T 3qj3_A          289 ------------------------------NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL  331 (331)
T ss_dssp             ------------------------------TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             ------------------------------CCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCceeeeeC
Confidence                                          3567777788889999999999999996689999999999986

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=4.8e-39  Score=280.18  Aligned_cols=147  Identities=55%  Similarity=1.047  Sum_probs=124.7

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|+++++||++|++|||.+.                               ++.|........+++.+|..++..
T Consensus       169 ~~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~  217 (315)
T 2c0y_A          169 MTTAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKCQYDSKYRAATCSKYTELPYG  217 (315)
T ss_dssp             HHHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCEEEECCTT
T ss_pred             HHHHHHHHHHhCCcCchhcCCCccC-------------------------------CCCcccCCcccccccCCeEEeCCC
Confidence            3579999976689999999999987                               566765544556789999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+|+|++..++|++|++|||.++.|.. .++|||+|||||+                         
T Consensus       218 ~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~-~~~HaV~iVGyg~-------------------------  271 (315)
T 2c0y_A          218 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGD-------------------------  271 (315)
T ss_dssp             CHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCTTCCS-CCCEEEEEEEEEE-------------------------
T ss_pred             CHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCCCCCC-cCCEEEEEEEEee-------------------------
Confidence            99999999999999999999954789999999998877865 6677777777776                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                  + ++.+|||||||||++|||+|||||.|+..|.|||++.++||+|
T Consensus       272 ----------------------------~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  315 (315)
T 2c0y_A          272 ----------------------------L-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  315 (315)
T ss_dssp             ----------------------------E-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             ----------------------------c-CCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCceeEEeeC
Confidence                                        2 3567788888889999999999999996589999999999986

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=6.8e-39  Score=279.33  Aligned_cols=151  Identities=58%  Similarity=1.128  Sum_probs=126.0

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|+++++||++|++|||.+.                               ++.|........+++.+|..|+. 
T Consensus       166 ~~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~-  213 (316)
T 1cs8_A          166 MDYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESCKYNPKYSVANDAGFVDIPK-  213 (316)
T ss_dssp             HHHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCCEEECCS-
T ss_pred             HHHHHHHHHHhCCcCchhccCCCCC-------------------------------CCCcCCCCccceeEeccEEEeCC-
Confidence            3579999976789999999999987                               56676555555688999999977 


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|+++|||+|+|++..++|++|++|||.++.|....++|||+|||||++.                       
T Consensus       214 ~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGygd~~-----------------------  270 (316)
T 1cs8_A          214 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES-----------------------  270 (316)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEEC-----------------------
T ss_pred             CHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCCCCCCCCEEEEEEEecCCc-----------------------
Confidence            999999999999999999999546899999999987778755667777777777310                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                 ++.++.+|||||||||++|||+|||||.|+.+|.|||++.++||+|
T Consensus       271 ---------------------------~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  316 (316)
T 1cs8_A          271 ---------------------------TESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             ---------------------------CSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             ---------------------------ccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCccceeeEeeC
Confidence                                       2224678888888889999999999999996689999999999986

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=9.3e-39  Score=277.79  Aligned_cols=145  Identities=47%  Similarity=0.978  Sum_probs=123.6

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++ ++||++|++|||.+.                               ++.|........+++.+|..|+..+
T Consensus       162 ~~a~~yi~-~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~~  209 (310)
T 2o6x_A          162 ENAYQYLK-QFGLETESSYPYTAV-------------------------------EGQCRYNKQLGVAKVTGFYTVHSGS  209 (310)
T ss_dssp             HHHHHHHT-TSCBCBTTTSCCCSS-------------------------------CCCCCCCGGGCCEEEEEEEEECSCC
T ss_pred             HHHHHHHH-HCCcCchhcCCCCCC-------------------------------CCCccCCCCCCceEeCeEEEeCCCC
Confidence            57999997 789999999999987                               5667655545568999999998779


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+|+|++. ++|++|++|||.++.|....++|||+|||||+                          
T Consensus       210 ~~~i~~~l~~~GPV~v~i~~~-~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~--------------------------  262 (310)
T 2o6x_A          210 EVELKNLVGAEGPAAVAVDVE-SDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT--------------------------  262 (310)
T ss_dssp             HHHHHHHHHHHCCEEEEECCC-HHHHTEEEEEECCSSCCTTCCCEEEEEEEEEE--------------------------
T ss_pred             HHHHHHHHHhcCCeEEEEecc-hhhhhCCCceecCCCCCCCCCCEEEEEEEEec--------------------------
Confidence            999999999999999999994 68999999999877786556677777777776                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                 + ++.+|||||||||++|||+|||||.|+.+|+|||++.++||++
T Consensus       263 ---------------------------~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p~~  306 (310)
T 2o6x_A          263 ---------------------------Q-GGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV  306 (310)
T ss_dssp             ---------------------------E-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEEEE
T ss_pred             ---------------------------c-CCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEEEe
Confidence                                       1 3567788888889999999999999996689999999999975

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=1.6e-38  Score=264.00  Aligned_cols=144  Identities=44%  Similarity=0.878  Sum_probs=122.0

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||+..                               ++.|........+++.+|..++..+
T Consensus        72 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~v~~~~  120 (220)
T 8pch_A           72 SQAFEYIRYNKGIMGEDTYPYKGQ-------------------------------DDHCKFQPDKAIAFVKDVANITMND  120 (220)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECEEEEEECCTTC
T ss_pred             HHHHHHHHHcCCcCcccccCccCC-------------------------------CCCCCCCCCcceEEeCCEEEeCCCC
Confidence            579999986569999999999987                               5667766656668899999998789


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCC--CCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNST--QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~--~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      +++||++|+++|||+++|++ .++|+.|++|||.++.|...  ..+|||+|||||+                        
T Consensus       121 ~~~ik~~l~~~gPV~~~~~~-~~~f~~Y~~Giy~~~~~~~~~~~~~HaV~iVGyg~------------------------  175 (220)
T 8pch_A          121 EEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGE------------------------  175 (220)
T ss_dssp             HHHHHHHHHHTCCEEEEECC-CHHHHTCCSSEECCSSCCCSTTTCCEEEEEEEEEE------------------------
T ss_pred             HHHHHHHHHhcCCEEEEEEe-ccchhhcCCCcccCCcCCCCCCcCCcEEEEEEEEc------------------------
Confidence            99999999999999999999 46999999999988778643  4566666666665                        


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL  232 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~  232 (233)
                                                    +++.+|||||||||++|||+|||||+|+. |+|||++.+.||+
T Consensus       176 ------------------------------~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~cgi~~~~~~~~  217 (220)
T 8pch_A          176 ------------------------------ENGIPYWIVKNSWGPQWGMNGYFLIERGK-NMCGLAACASYPI  217 (220)
T ss_dssp             ------------------------------ETTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTSCEEEE
T ss_pred             ------------------------------cCCeeEEEEECCCCcCcccCCEEEEEcCC-CccccCCCceeEe
Confidence                                          23567788888889999999999999997 9999999999997

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=6.2e-38  Score=259.45  Aligned_cols=143  Identities=37%  Similarity=0.723  Sum_probs=116.6

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||.+.                               +..|........+++.++..++. +
T Consensus        69 ~~a~~~i~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~i~~-~  116 (214)
T 1m6d_A           69 SNAYSAIKNLGGLETEDDYSYQGH-------------------------------MQSCQFSAEKAKVYIQDSVELSQ-N  116 (214)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCCCGGGCCBCCSEEEECCS-C
T ss_pred             HHHHHHHHHhcCcccccCcCcCCC-------------------------------CCcCCCCcccceEEecCEEEeCh-H
Confidence            579999976569999999999987                               45566544444577889998865 8


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCC--CCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP--ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~--~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      +++||++|+++|||+++|++.  .|++|++|||.+.  .|.....+|||+|||||+                        
T Consensus       117 ~~~ik~~l~~~GPV~v~i~~~--~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~------------------------  170 (214)
T 1m6d_A          117 EQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQ------------------------  170 (214)
T ss_dssp             HHHHHHHHHHHCCEEEEECTH--HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEE------------------------
T ss_pred             HHHHHHHHHhCCCEEEEEEec--hhhhcCCceecCCCCcCCCCcCCEEEEEEEEee------------------------
Confidence            999999999999999999983  5999999999753  365445566666666665                        


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   + ++.+|||||||||++|||+|||||.|+. |+|||++.++||++
T Consensus       171 -----------------------------~-~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n~Cgi~~~~~~~~~  213 (214)
T 1m6d_A          171 -----------------------------R-SDVPFWAIKNSWGTDWGEKGYYYLHRGS-GACGVNTMASSAVV  213 (214)
T ss_dssp             -----------------------------E-TTEEEEEEECSBCTTSTBTTEEEEESSS-CGGGTTTTCEEEEC
T ss_pred             -----------------------------c-CCcEEEEEEeCCCCCcccCcEEEEEcCC-CccccCceeEEEEe
Confidence                                         1 3567888888889999999999999996 99999999999985

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=1.5e-37  Score=262.13  Aligned_cols=145  Identities=37%  Similarity=0.825  Sum_probs=119.8

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceE---EEcC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGY---VDIP   78 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~---~~~~   78 (233)
                      ..||+|++++.||++|++|||.+.                               ++.|........+++.+|   ..++
T Consensus        70 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~y~~~~~v~  118 (246)
T 2b1m_A           70 YQSFEWVVKHGGIASEADYPYKAR-------------------------------DGKCKANEIQDKVTIDNYGVQILSN  118 (246)
T ss_dssp             HHHHHHHHHTTCBCBTTTSCCCSS-------------------------------CCCCCGGGCCCCBCCSEEEEEECCT
T ss_pred             HHHHHHHHHhCCcCccccccccCC-------------------------------CCcCcCCCCCCceeEcCcceeeecC
Confidence            579999986569999999999987                               455665444456788899   8887


Q ss_pred             CCcHHHHHHHHHh---cCCeEEEEeccCccccccccceEeCCCCCCCC-CCeeEEEeeeeecCCCCceeEEeecCCcccc
Q psy403           79 EGDEYKLKAAVAT---IGPVSIAIDASHQSFQFYSEGVYYEPECNSTQ-LDHAVLVVGYGTDENGNDYWLVKNSWNTTWG  154 (233)
Q Consensus        79 ~~~~~~i~~~i~~---~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~-~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg  154 (233)
                      ..++++||++|++   +|||+++|++  ++|++|++|||.++.|.... .+|||+|||||+                   
T Consensus       119 ~~~~~~ik~~l~~~~~~GPV~v~i~~--~~f~~Y~~Giy~~~~c~~~~~~~HaV~iVGyg~-------------------  177 (246)
T 2b1m_A          119 ESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS-------------------  177 (246)
T ss_dssp             TSCHHHHHHHHHHHHHHSCEEEEECC--TTGGGCCSSEECCTTCCSSCCCCEEEEEEEEEE-------------------
T ss_pred             CChHHHHHHHHHhhccCCCEEEEEEc--chhhcccceeecCCCCCCCCcCceEEEEEEEec-------------------
Confidence            7799999999999   6999999998  68999999999876786543 567777777765                   


Q ss_pred             ccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccc
Q psy403          155 DEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFP  231 (233)
Q Consensus       155 ~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~  231 (233)
                                                        + ++.+|||||||||++|||+|||||.|+.   .|+|||++.++||
T Consensus       178 ----------------------------------~-~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p  222 (246)
T 2b1m_A          178 ----------------------------------E-DGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYP  222 (246)
T ss_dssp             ----------------------------------E-TTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEE
T ss_pred             ----------------------------------c-CCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEE
Confidence                                              2 3567788888889999999999999985   3899999999999


Q ss_pred             cC
Q psy403          232 LV  233 (233)
Q Consensus       232 ~~  233 (233)
                      ++
T Consensus       223 ~~  224 (246)
T 2b1m_A          223 II  224 (246)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=1.8e-37  Score=257.80  Aligned_cols=144  Identities=42%  Similarity=0.861  Sum_probs=119.5

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||.+.                               ++.|........+++.+|..++..+
T Consensus        71 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~y~~v~~~~  119 (221)
T 1cqd_A           71 NPAFQFIVNNGGINSEETYPYRGQ-------------------------------DGICNSTVNAPVVSIDSYENVPSHN  119 (221)
T ss_dssp             HHHHHHHHHHTSBCBTTTSCCCSS-------------------------------CCCCCSSSCCCSBCCSEEEECCSSC
T ss_pred             HHHHHHHHHhCCccccccCCccCC-------------------------------CCCcCCCCCCceEEeccEEEeCCch
Confidence            579999986669999999999987                               4556654445668899999998778


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|++ |||+++|++..++|++|++|||.+ .|.. ..+|||+|||||+ +                        
T Consensus       120 ~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGyg~-~------------------------  171 (221)
T 1cqd_A          120 EQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG-SCNI-SANHALTVVGYGT-E------------------------  171 (221)
T ss_dssp             HHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHHh-CCEEEEEeccCcccccccCccccC-CCCC-cCCeEEEEEEEcc-c------------------------
Confidence            9999999976 999999999547899999999975 5753 4677777777776 1                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                   ++.+|||||||||++|||+|||||.|+.   .|+|||++.++||++
T Consensus       172 -----------------------------~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  217 (221)
T 1cqd_A          172 -----------------------------NDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVK  217 (221)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             -----------------------------CCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEe
Confidence                                         3567777888889999999999999984   389999999999985

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=100.00  E-value=1.5e-37  Score=258.51  Aligned_cols=144  Identities=28%  Similarity=0.528  Sum_probs=119.9

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++ +||++|++|||.+.                               ++.|. ......+++.+|..++..+
T Consensus        77 ~~a~~~~~~-~Gi~~e~~yPY~~~-------------------------------~~~C~-~~~~~~~~i~~~~~v~~~~  123 (222)
T 3f5v_A           77 PRGIEYIQH-NGVVQESYYRYVAR-------------------------------EQSCR-RPNAQRFGISNYCQIYPPN  123 (222)
T ss_dssp             HHHHHHHHH-HCEEBGGGSCCCSS-------------------------------CCCCC-CCSSCEECCSEEEECCSCC
T ss_pred             HHHHHHHHH-cCCCchhhCCCccc-------------------------------CCCcc-CCcCcceeeccEEEeCCCC
Confidence            579999976 59999999999987                               55666 3445668899999997789


Q ss_pred             HHHHHHHHHh-cCCeEEEEecc-CccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           82 EYKLKAAVAT-IGPVSIAIDAS-HQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        82 ~~~i~~~i~~-~GPv~v~~~~~-~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      +++||++|++ +|||+++|++. .++|++|++|++....|.....+|||+|||||+ +                      
T Consensus       124 ~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~~~~~~~~~~HaV~iVGyg~-~----------------------  180 (222)
T 3f5v_A          124 ANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSN-A----------------------  180 (222)
T ss_dssp             HHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSSCEEEEEEEEEEEE-E----------------------
T ss_pred             HHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceecCCCCCCccCcEEEEEEEec-c----------------------
Confidence            9999999999 89999999984 368999999988765555455667777777765 2                      


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                     ++++|||||||||++|||+|||||.|+. |+|||++.+.||+|
T Consensus       181 -------------------------------~g~~ywivkNSWG~~WGe~Gy~~i~r~~-n~cgi~~~~~~p~~  222 (222)
T 3f5v_A          181 -------------------------------QGVDYWIVRNSWDTNWGDNGYGYFAANI-DLMMIEEYPYVVIL  222 (222)
T ss_dssp             -------------------------------TTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTSCEEEEC
T ss_pred             -------------------------------CCCEEEEEEcCCCCCcccCCEEEEEcCC-CeecCCCceeEEeC
Confidence                                           3567788888889999999999999996 99999999999986

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=1.8e-37  Score=269.61  Aligned_cols=144  Identities=28%  Similarity=0.548  Sum_probs=121.3

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      +..||+|+++ +||++|++|||.+.                               ++.|. ......+++.+|..|+..
T Consensus       156 ~~~a~~yi~~-~Gi~~e~~yPY~~~-------------------------------~~~C~-~~~~~~~~i~~y~~v~~~  202 (312)
T 1xkg_A          156 IPRGIEYIQH-NGVVQESYYRYVAR-------------------------------EQSCR-RPNAQRFGISNYCQIYPP  202 (312)
T ss_dssp             HHHHHHHHHH-HCEEBGGGSCCCSS-------------------------------CCCCC-CCSSCEECCSEEEECCSC
T ss_pred             HHHHHHHHHH-cCCCccccCCccCC-------------------------------CCCCC-CCCCceEEEeeEEEeCCC
Confidence            3579999986 79999999999987                               55666 444456889999999877


Q ss_pred             cHHHHHHHHHh-cCCeEEEEeccCc-cccccccceEeCCCCC-CCCCCeeEEEeeeeecCCCCceeEEeecCCccccccc
Q psy403           81 DEYKLKAAVAT-IGPVSIAIDASHQ-SFQFYSEGVYYEPECN-STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEG  157 (233)
Q Consensus        81 ~~~~i~~~i~~-~GPv~v~~~~~~~-~f~~Y~~Giy~~~~c~-~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G  157 (233)
                      ++++||++|++ +|||+|+|++... +|++|++|||..+.|. ... +|||+|||||+ +                    
T Consensus       203 ~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~~~c~~~~~-~HaV~iVGyg~-~--------------------  260 (312)
T 1xkg_A          203 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN-YHAVNIVGYSN-A--------------------  260 (312)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCE-EEEEEEEEEEE-E--------------------
T ss_pred             CHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcCCCCCCCcC-ceEEEEEEEec-c--------------------
Confidence            99999999999 9999999999433 8999999999987886 434 77777777776 1                    


Q ss_pred             cceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                       ++.+|||||||||++|||+|||||.|+. |.|||++.++||++
T Consensus       261 ---------------------------------~g~~yWivkNSWG~~WGe~GY~~i~r~~-n~CgI~~~~~~~~~  302 (312)
T 1xkg_A          261 ---------------------------------QGVDYWIVRNSWDTNWGDNGYGYFAANI-DLMMIEEYPYVVIL  302 (312)
T ss_dssp             ---------------------------------TTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTCCEEEEC
T ss_pred             ---------------------------------CCceEEEEEeCCCCcccCCcEEEEEcCC-CcccccceeEEeec
Confidence                                             3567788888889999999999999995 99999999999975

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=4.8e-37  Score=254.31  Aligned_cols=143  Identities=41%  Similarity=0.865  Sum_probs=117.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||+..                               ++.|.... ...+++.+|..++..+
T Consensus        69 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~-~~~~~i~~~~~v~~~~  116 (215)
T 1iwd_A           69 NNAFQYIITNGGIDTQQNYPYSAV-------------------------------QGSCKPYR-LRVVSINGFQRVTRNN  116 (215)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCTTC-CCCBCCCEEEECCTTC
T ss_pred             HHHHHHHHHhCCcccccccCccCC-------------------------------CCCCCCCC-CceEEeCcEEEeCCCc
Confidence            579999976569999999999987                               44555433 2557889999998778


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|++ |||+++|++...+|+.|++|||.+ .|.. ..+|||+|||||+ +                        
T Consensus       117 ~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~-~~~HaV~iVGyg~-~------------------------  168 (215)
T 1iwd_A          117 ESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG-PCGT-AQNHGVVIVGYGT-Q------------------------  168 (215)
T ss_dssp             HHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHHh-CCEEEEEecCCcchhhcCCceECC-CCCC-cCCEEEEEEEEec-c------------------------
Confidence            9999999987 999999999544899999999975 5753 5677777777776 1                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~  233 (233)
                                                   ++.+|||||||||++|||+|||||.|+.+   |+|||++.++||++
T Consensus       169 -----------------------------~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          169 -----------------------------SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             -----------------------------CCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence                                         35677788888899999999999999852   89999999999986

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=4e-37  Score=255.95  Aligned_cols=145  Identities=39%  Similarity=0.833  Sum_probs=116.0

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||++.                               ++.|...... .+++.+|..++ .+
T Consensus        69 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~-~~~i~~~~~v~-~~  115 (222)
T 3u8e_A           69 DDAFRWVITNGGIASDANYPYTGV-------------------------------DGTCDLNKPI-AARIDGYTNVP-NS  115 (222)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCCCSCC-CBCCCEEEECC-SC
T ss_pred             HHHHHHHHHcCCccchhcCCCccc-------------------------------CCccccCCCC-eEEEccEEEeC-Cc
Confidence            579999976559999999999987                               4556544333 67899999997 79


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCcccccccc-ceEeCCCCCC--CCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSE-GVYYEPECNS--TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY  158 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~-Giy~~~~c~~--~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~  158 (233)
                      +++||++|. +|||+++|++...+|++|++ |||.++.|..  ...+|||+|||||+                       
T Consensus       116 ~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~~~~~~HaV~iVGyg~-----------------------  171 (222)
T 3u8e_A          116 SSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGS-----------------------  171 (222)
T ss_dssp             HHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCCTTCCCCGGGCCEEEEEEEEEE-----------------------
T ss_pred             HHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECCCcccCCCCcCCEEEEEEEEee-----------------------
Confidence            999999995 59999999995458999999 9998767753  13455555555554                       


Q ss_pred             ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCC---ccccccccccccC
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN---NCGVASSASFPLV  233 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~---~cgi~~~~~~~~~  233 (233)
                                                    +.++.+|||||||||++|||+|||||.|+.++   +|||++.++||++
T Consensus       172 ------------------------------~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          172 ------------------------------NGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             ------------------------------SSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             ------------------------------cCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence                                          33367788888888999999999999999732   9999999999985

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=5e-37  Score=254.34  Aligned_cols=143  Identities=36%  Similarity=0.745  Sum_probs=117.1

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++ +||++|++|||+..                               ++.|.... ....+++.+|..++..
T Consensus        69 ~~a~~yi~~-~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~y~~v~~~  116 (216)
T 1ppo_A           69 PYALEYVAK-NGIHLRSKYPYKAK-------------------------------QGTCRAKQVGGPIVKTSGVGRVQPN  116 (216)
T ss_dssp             HHHHHHHHH-HCBCBTTTSCCCSS-------------------------------CCCCCGGGCCSCCBCCCEEEECCSS
T ss_pred             HHHHHHHHH-hCcCccccCCccCC-------------------------------CCCcCCCCCCCceEEeccEEEECCC
Confidence            579999975 58999999999987                               44455432 2345789999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|++ |||+++|++..++|++|++|||.+ .|.. ..+|||+|||||+ +                       
T Consensus       117 ~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGyg~-~-----------------------  169 (216)
T 1ppo_A          117 NEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG-PCGT-KVDHAVTAVGYGK-S-----------------------  169 (216)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECC-SCCS-CCCEEEEEEEEEE-E-----------------------
T ss_pred             CHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECC-CCCC-CCCEEEEEEEeec-c-----------------------
Confidence            99999999997 999999999547899999999975 5754 3577777777776 1                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++|||+|||||.|+.   .|+|||++.++||++
T Consensus       170 ------------------------------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~  215 (216)
T 1ppo_A          170 ------------------------------GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             ------------------------------TTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             ------------------------------CCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEee
Confidence                                          2467788888889999999999999985   489999999999986

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=4.4e-37  Score=255.90  Aligned_cols=145  Identities=48%  Similarity=0.933  Sum_probs=121.0

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++++||++|++|||++.                               ++.|........+++.+|..++..+
T Consensus        77 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~i~~~~~~~~~~  125 (224)
T 3f75_A           77 NDAFQYVLDSGGICSEDAYPYLAR-------------------------------DEECRAQSCEKVVKILGFKDVPRRS  125 (224)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCGGGSCCCBCCSEEEECCSSC
T ss_pred             HHHHHHHHHhCCccccccCCCcCC-------------------------------CCCCCcCCCCceEEeccEEEeCCCh
Confidence            579999986579999999999987                               5566655555567789999998789


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+ +|||+++|++..++|++|++|||. +.|. ...+|||+|||||+                          
T Consensus       126 ~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~-~~~~-~~~~Hav~iVGyg~--------------------------  176 (224)
T 3f75_A          126 EAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD-ASCG-TDLDHGVLLVGYGT--------------------------  176 (224)
T ss_dssp             HHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC-CCCC-CCCCEEEEEEEEEE--------------------------
T ss_pred             HHHHHHHHc-CCCEEEEEeccchhhhcCccceEC-CCCC-CccCeEEEEEEEec--------------------------
Confidence            999999999 799999999965589999999997 6674 45677777777776                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCC-CCcceEEEeccCCCCCCCCceEEEEecC--CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDE-NGNDYWLVKNSWNTTWGDEGYIKMARNR--ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~-~~~~yWiv~nswg~~WG~~Gy~~i~r~~--~~~cgi~~~~~~~~~  233 (233)
                                                 +. ++.+|||||||||++||++|||||.|+.  .|.|||++.++||+|
T Consensus       177 ---------------------------~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          177 ---------------------------DKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             ---------------------------ETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             ---------------------------ccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence                                       22 4567888888889999999999999985  489999999999986

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=9.3e-37  Score=252.55  Aligned_cols=144  Identities=42%  Similarity=0.775  Sum_probs=115.3

Q ss_pred             hhHHHHHHhC--CCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCC
Q psy403            2 DQAFQYIKDN--HGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPE   79 (233)
Q Consensus         2 ~~a~~y~~~~--~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~   79 (233)
                      ..||+|++++  .|+++|++|||...++.                            ...|........+++.+|..++.
T Consensus        69 ~~a~~y~~~~~~gGi~~e~~yPY~~~~~~----------------------------~~~C~~~~~~~~~~i~~~~~v~~  120 (215)
T 3i06_A           69 NNAFEWIVQENNGAVYTEDSYPYASGEGI----------------------------SPPCTTSGHTVGATITGHVELPQ  120 (215)
T ss_dssp             HHHHHHHHHHSTTEEEC-CCSCCCCTTSC----------------------------CCCCCCSSCCEEEEEEEEEECCS
T ss_pred             HHHHHHHHHhccccccccCccCCcCCCCC----------------------------CCccccCCcccceEecceEEeCC
Confidence            5799999753  37999999999976211                            23465544455678999999965


Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                       ++++||++|+++|||+++|++  ++|++|++|||.  .|.....+|||+|||||+ +                      
T Consensus       121 -~~~~ik~~l~~~gPV~v~~~~--~~f~~Y~~Giy~--~~~~~~~~HaV~iVGyg~-~----------------------  172 (215)
T 3i06_A          121 -DEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMT--SCVSEQLDHGVLLVGYND-S----------------------  172 (215)
T ss_dssp             -CHHHHHHHHHHHCCEEEEECC--TTGGGCCSSEEC--SCCCSCCCEEEEEEEEES-S----------------------
T ss_pred             -hHHHHHHHHHHCCCEEEEEEc--hHHhcCCCCccc--CCCCCccCcEEEEEEEec-c----------------------
Confidence             899999999999999999998  489999999996  365455677777777765 2                      


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                     ++.+|||||||||++|||+|||||.|+. |+|||++.+.||+|
T Consensus       173 -------------------------------~g~~yWivkNSWG~~WGe~Gy~~i~rg~-n~cgi~~~~~~~~~  214 (215)
T 3i06_A          173 -------------------------------AAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSAVV  214 (215)
T ss_dssp             -------------------------------SSSCEEEEECSBCTTSTBTTEEEEESSS-CGGGTTSSEEEEEE
T ss_pred             -------------------------------CCcEEEEEECCCCCCcccCceEEEecCC-CeecCCCceeEEec
Confidence                                           3566777777789999999999999997 99999999999985

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=100.00  E-value=4.7e-37  Score=255.18  Aligned_cols=144  Identities=44%  Similarity=0.907  Sum_probs=116.0

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++++||++|++|||+..                               ++.|.... ....+++.+|..++..
T Consensus        71 ~~a~~~~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~~~~v~~~  119 (220)
T 3p5u_A           71 TDGFQFIINNGGINTEANYPYTAE-------------------------------EGQCNLDLQQEKYVSIDTYENVPYN  119 (220)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCHHHHTCCSBCCCEEEECCTT
T ss_pred             HHHHHHHHHhCCcCcccccccccC-------------------------------CCCcCcCCCCCceEEEccEEEeCCC
Confidence            579999987679999999999987                               44454322 2234788899999878


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++| .+|||+++|++..++|++|++|||.+ .|.. ..+|||+|||||+ +                       
T Consensus       120 ~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGyg~-~-----------------------  172 (220)
T 3p5u_A          120 NEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTG-PCGT-AVDHAVTIVGYGT-E-----------------------  172 (220)
T ss_dssp             CHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECC-CCCC-SCCEEEEEEEEEE-E-----------------------
T ss_pred             cHHHHHHHH-hcCCEEEEEecCchhhccccCceECC-CCCC-ccceEEEEEEEec-C-----------------------
Confidence            999999998 67999999999657899999999975 5653 3577777777765 2                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC--CccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE--NNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~--~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++|||+|||||+|+.+  ++|||++.++||++
T Consensus       173 ------------------------------~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~~p~~  217 (220)
T 3p5u_A          173 ------------------------------GGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVK  217 (220)
T ss_dssp             ------------------------------TTEEEEEEECSBCTTSTBTTEEEEECCCCTTCGGGTTSSCEEEEC
T ss_pred             ------------------------------CCceEEEEECCCCCCcccCCEEEEECCCCCCCccCcccccceEEE
Confidence                                          35667777788899999999999999973  29999999999985

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=7.8e-37  Score=253.52  Aligned_cols=143  Identities=36%  Similarity=0.799  Sum_probs=116.9

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++ +||++|++|||++.                               ++.|.... ....+++.+|..++..
T Consensus        69 ~~a~~~~~~-~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~y~~v~~~  116 (218)
T 1yal_A           69 TTSLQYVAN-NGVHTSKVYPYQAK-------------------------------QYKCRATDKPGPKVKITGYKRVPSN  116 (218)
T ss_dssp             HHHHHHHHH-HCBCBTTTSCCCSS-------------------------------CCCCCGGGCCSCCBCCSEEEECCSS
T ss_pred             HHHHHHHHH-cCCCccccccccCC-------------------------------CCCcccCcCCCceEEEeeEEEeCCC
Confidence            579999975 58999999999987                               44455432 2345789999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|++ |||+++|++..++|++|++|||.+ .|.. ..+|||+|||||+ +                       
T Consensus       117 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGyg~-~-----------------------  169 (218)
T 1yal_A          117 CETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG-PCGT-KLDHAVTAVGYGT-S-----------------------  169 (218)
T ss_dssp             BHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC-SCCS-CCCEEEEEEEEEE-E-----------------------
T ss_pred             CHHHHHHHHHh-CCEEEEEeccchhccccCCceECC-CCCC-CCCEEEEEEEeec-c-----------------------
Confidence            99999999986 999999999547899999999975 5754 3577777777776 1                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++|||+|||||.|+.   .|+|||+++++||++
T Consensus       170 ------------------------------~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (218)
T 1yal_A          170 ------------------------------DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             ------------------------------TTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             ------------------------------CCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEE
Confidence                                          2467788888889999999999999985   489999999999985

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=1.4e-36  Score=253.69  Aligned_cols=145  Identities=50%  Similarity=0.930  Sum_probs=117.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCC-CCCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK-RAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~-~~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++++||++|++|||.+.                               ++.|... .....+++.+|..++..
T Consensus        71 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~y~~v~~~  119 (229)
T 1s4v_A           71 DYAFEFIKQRGGITTEANYPYEAY-------------------------------DGTCDVSKENAPAVSIDGHENVPEN  119 (229)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCHHHHTCCCBCCCEEEECCTT
T ss_pred             HHHHHHHHHhCCccccccCCccCC-------------------------------CCCCCCCCCCCcEEEeeeEEEeCCc
Confidence            579999976569999999999987                               4455532 12345788999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      +++.||++|++ |||+++|+++.++|++|++|||.+ .|.. ..+|||+|||||+                         
T Consensus       120 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-~c~~-~~~HaV~iVGyg~-------------------------  171 (229)
T 1s4v_A          120 DENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG-SCGT-ELDHGVAIVGYGT-------------------------  171 (229)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEEEE-------------------------
T ss_pred             cHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECC-CCCC-CCCeEEEEEEecc-------------------------
Confidence            89999999987 999999999667899999999975 5653 3567777777766                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                  +.++.+|||||||||++|||+|||||.|+.   .|+|||++.+.||++
T Consensus       172 ----------------------------~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  219 (229)
T 1s4v_A          172 ----------------------------TIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (229)
T ss_dssp             ----------------------------CTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ----------------------------ccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEe
Confidence                                        223567888888889999999999999985   489999999999975

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=1.1e-36  Score=256.20  Aligned_cols=150  Identities=30%  Similarity=0.719  Sum_probs=122.9

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCC-CcCCCCCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDN-CRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~-C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++++||++|++|||.+.                               ++. |........+++.+|..++..
T Consensus        86 ~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~~C~~~~~~~~~~i~~~~~v~~~  134 (241)
T 2oul_A           86 NNAFEDMIELGGICPDGDYPYVSD-------------------------------APNLCNIDRCTEKYGIKNYLSVPDN  134 (241)
T ss_dssp             HHHHHHHHHTTSBCBTTSSCCCTT-------------------------------SCCCCCTTSSSCCBCCSEEEECCTT
T ss_pred             HHHHHHHHHhCCcCccccCCCcCC-------------------------------CCCcCCCCCCccceeeeeEEEeCCC
Confidence            579999986679999999999987                               344 665444566889999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|   |||+++|++ .++|+.|++|||.+ .|... .+|||+|||||++ .      .++..           
T Consensus       135 ~~~~ik~~l---GPV~v~i~~-~~~f~~Y~~Giy~~-~c~~~-~~HaV~iVGyg~~-~------~~~~~-----------  190 (241)
T 2oul_A          135 KLKEALRFL---GPISISVAV-SDDFAFYKEGIFDG-ECGDQ-LNHAVMLVGFGMK-E------IVNPL-----------  190 (241)
T ss_dssp             CHHHHHHHT---CCEEEEECB-CHHHHTCCSSBCCS-CBCSS-CCEEEEEEEEEEE-E------EECTT-----------
T ss_pred             CHHHHHHhh---CCEEEEEec-CcchhhcCCcEEcC-cCCCC-CCEEEEEEEeccc-c------ccccc-----------
Confidence            999999999   999999999 57899999999986 78654 8999999999982 1      01111           


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCc----cccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN----CGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~----cgi~~~~~~~~~  233 (233)
                                                .....+.+|||||||||++|||+|||||.|+. |.    |||+++++||++
T Consensus       191 --------------------------~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~-~~~~g~Cgi~~~~~~~~~  240 (241)
T 2oul_A          191 --------------------------TKKGEKHYYYIIKNSWGQQWGERGFINIETDE-SGLMRKCGLGTDAFIPLI  240 (241)
T ss_dssp             --------------------------TCSEEEEEEEEEECSBCTTSTBTTEEEEEECS-SSCCCGGGTTSSEEEEEC
T ss_pred             --------------------------cccCCCCCEEEEEeCCCCCcccCCEEEEEcCC-CCCCCcCCccceEEEEee
Confidence                                      00013578999999999999999999999997 55    999999999986

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=2.8e-36  Score=248.49  Aligned_cols=138  Identities=43%  Similarity=0.827  Sum_probs=112.4

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.||++|++|||++.                               ++.|..  ....+++.+|..++..+
T Consensus        69 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~--~~~~~~i~~~~~v~~~~  115 (208)
T 1o0e_A           69 VFAYQYIINNGGIDTQANYPYKAV-------------------------------QGPCQA--ASKVVSIDGYNGVPFCN  115 (208)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCC--CCCCBCCCEEEECCTTC
T ss_pred             HHHHHHHHHhCCcCcccccCccCC-------------------------------CCcCCC--CCceEEeCeEEEeCCCC
Confidence            579999976569999999999987                               455654  33457889999998779


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|++ |||+++|++...+|++|++|||.+ .|.. ..+|||+|||||+                          
T Consensus       116 ~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~-~~~HaV~iVGyg~--------------------------  166 (208)
T 1o0e_A          116 EXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSG-PCGT-KLNHGVTIVGYQA--------------------------  166 (208)
T ss_dssp             HHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCS-CCCEEEEEEEECS--------------------------
T ss_pred             HHHHHHHHHh-CCEEEEEEccCcccccccCceECC-CCCC-cCCEEEEEEEeCC--------------------------
Confidence            9999999987 999999999545899999999975 4643 3456666655543                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC-CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR-ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~-~~~cgi~~~~~~~~~  233 (233)
                                                      +|||||||||++|||+|||||.|+. .|+|||++.++||++
T Consensus       167 --------------------------------~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          167 --------------------------------NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             --------------------------------SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             --------------------------------CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence                                            5677777779999999999999996 489999999999985

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=4.4e-36  Score=248.02  Aligned_cols=139  Identities=35%  Similarity=0.728  Sum_probs=111.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++ +||++|++|||+..                               ++.|.... ....+++.+|..++..
T Consensus        69 ~~a~~yi~~-~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~~~~v~~~  116 (212)
T 2cio_A           69 WSALQLVAQ-YGIHYRNTYPYEGV-------------------------------QRYCRSREKGPYAAKTDGVRQVQPY  116 (212)
T ss_dssp             HHHHHHHHH-TCBCBTTTSCCCSS-------------------------------CCCCCTTTTCSCSBCCSEEEECCSS
T ss_pred             HHHHHHHHH-hCcCcccccCCcCC-------------------------------CCCcCCCCCCCceEEEeeEEEeCCc
Confidence            579999975 59999999999987                               44555433 2456789999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|++ |||+++|++...+|++|++|||.+ .|.. ..+|||+|||||+                         
T Consensus       117 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~~~~-~~~HaV~iVGyg~-------------------------  168 (212)
T 2cio_A          117 NEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG-PCGN-KVDHAVAAVGYGP-------------------------  168 (212)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCS-CCCEEEEEEEEET-------------------------
T ss_pred             cHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecC-CCCC-CCCEEEEEEEecC-------------------------
Confidence            99999999987 999999999545899999999975 4643 3455555555543                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                       +|||||||||++|||+|||||.|+.   .|+|||++.++||++
T Consensus       169 ---------------------------------~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          169 ---------------------------------NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             ---------------------------------TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             ---------------------------------CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence                                             5677777779999999999999985   389999999999986

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=2.3e-36  Score=263.85  Aligned_cols=144  Identities=35%  Similarity=0.717  Sum_probs=118.1

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPE   79 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~   79 (233)
                      +..||+||++ +||++|++|||.+.                               ++.|.... ....+++.+|..|+.
T Consensus       174 ~~~a~~yi~~-~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~~~~v~~  221 (322)
T 1pci_A          174 PPYALEYVAK-NGIHLRSKYPYKAK-------------------------------QGTCRAKQVGGPIVKTSGVGRVQP  221 (322)
T ss_dssp             HHHHHHHHHH-HCBCBTTTSCCCSS-------------------------------CCCCTTTTCCSCCBCCCCEEECCS
T ss_pred             HHHHHHHHHH-hCCCchhhCCCCCC-------------------------------CCCCCCCCCCCceEEEeeEEEeCC
Confidence            3579999975 58999999999987                               45565442 234578999999987


Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      .++++||++|++ |||+|+|++..++|++|++|||.+ .|.. .++|||+|||||+                        
T Consensus       222 ~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~-~~~HaV~iVGyg~------------------------  274 (322)
T 1pci_A          222 NNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG-PCGT-KVDGAVTAVGYGK------------------------  274 (322)
T ss_dssp             SBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECC-SCCS-CCCEEEEEEEEEE------------------------
T ss_pred             CcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCC-CCCC-CCCEEEEEEEEec------------------------
Confidence            799999999987 999999999547899999999975 5754 3577777777776                        


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                   + ++.+|||||||||++|||+|||||.|+.   .|.|||++.++||++
T Consensus       275 -----------------------------~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~yp~~  321 (322)
T 1pci_A          275 -----------------------------S-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  321 (322)
T ss_dssp             -----------------------------E-TTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEEECC
T ss_pred             -----------------------------c-CCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeEEEe
Confidence                                         1 3567788888889999999999999985   489999999999986

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=1.6e-36  Score=255.54  Aligned_cols=150  Identities=33%  Similarity=0.690  Sum_probs=122.6

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCC-CcCCCCCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDN-CRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~-C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++++|+++|++|||.+.                               ++. |........+++.+|..++..
T Consensus        88 ~~a~~y~~~~~Gi~~e~~yPY~~~-------------------------------~~~~C~~~~~~~~~~i~~~~~v~~~  136 (243)
T 3bwk_A           88 TNAFDDMIDLGGLCSQDDYPYVSN-------------------------------LPETCNLKRCNERYTIKSYVSIPDD  136 (243)
T ss_dssp             HHHHHHHHHTTSBCBTTTSCCCTT-------------------------------SCCCCCGGGCSSCBCCCEEEECCTT
T ss_pred             HHHHHHHHHhCCcccccccCCcCC-------------------------------CCCcCCCCCCccceeeeeEEEeCCC
Confidence            579999986679999999999987                               344 655444556889999999877


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|   |||+++|++ .++|+.|++|||.+ .|... .+|||+|||||++ .      .++..           
T Consensus       137 ~~~~ik~~l---GPV~v~i~~-~~~f~~Y~~Giy~~-~c~~~-~~HaV~iVGyg~~-~------~~~~~-----------  192 (243)
T 3bwk_A          137 KFKEALRYL---GPISISIAA-SDDFAFYRGGFYDG-ECGAA-PNHAVILVGYGMK-D------IYNED-----------  192 (243)
T ss_dssp             CHHHHHHHT---CCEEEEECC-CHHHHTCCSSSCCC-CCCSS-CCEEEEEEEEEEE-E------EECTT-----------
T ss_pred             CHHHHHHhh---CCEEEEEec-ChhHHhcCCceecC-CCCCc-CCeEEEEEEecCc-c------ccccc-----------
Confidence            999999999   999999999 57899999999986 78755 8999999999982 1      01111           


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCc----cccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN----CGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~----cgi~~~~~~~~~  233 (233)
                                  +              ....+.+|||||||||++|||+|||||.|+. |.    |||++++.||++
T Consensus       193 ------------~--------------~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~-~~~~g~Cgi~~~~~~~~~  242 (243)
T 3bwk_A          193 ------------T--------------GRMEKFYYYIIKNSWGSDWGEGGYINLETDE-NGYKKTCSIGTEAYVPLL  242 (243)
T ss_dssp             ------------T--------------CSEEEEEEEEEECSBCTTSTBTTEEEEEECS-SSCCCSTTTTSSEEEEEC
T ss_pred             ------------c--------------ccCCCCCEEEEEeCCCCCcCCCcEEEEEcCC-CCCCCcCCccceEEEEec
Confidence                        0              0013578999999999999999999999997 55    999999999986

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=3e-36  Score=256.11  Aligned_cols=145  Identities=47%  Similarity=0.912  Sum_probs=116.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC---CCc-ceEeceEEEc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR---AKS-GAVDRGYVDI   77 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~---~~~-~~~i~~~~~~   77 (233)
                      ..||+|+++++||++|++|||...                               ++.|....   ... .+++.+|..+
T Consensus        73 ~~a~~yi~~~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~~~~i~~y~~v  121 (262)
T 2fo5_A           73 DNAFEYIKNNGGLITEAAYPYRAA-------------------------------RGTCNVARAAQNSPVVVHIDGHQDV  121 (262)
T ss_dssp             HHHHHHHHHTTCEEBTTTSCCCSS-------------------------------CCCCCHHHHHHHCCCEECCCEEEEC
T ss_pred             HHHHHHHHHcCCcCchhcCCCcCc-------------------------------cCccCCcccccCCceeEEeceEEEc
Confidence            579999986669999999999987                               44555332   234 5788999999


Q ss_pred             CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccc
Q psy403           78 PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEG  157 (233)
Q Consensus        78 ~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G  157 (233)
                      +..++++||++|++ |||+++|++..++|++|++|||.. .|.. ..+|||+|||||+                      
T Consensus       122 ~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~~-~c~~-~~~HaV~IVGyg~----------------------  176 (262)
T 2fo5_A          122 PANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTG-ECGT-ELDHGVAVVGYGV----------------------  176 (262)
T ss_dssp             CTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEEEE----------------------
T ss_pred             CCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceECC-CCCC-cCCEEEEEEEEcc----------------------
Confidence            87799999999987 999999999547899999999975 5653 3466666666665                      


Q ss_pred             cceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                     +.++.+|||||||||++|||+|||||.|+.   .|.|||++.++||++
T Consensus       177 -------------------------------~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~  224 (262)
T 2fo5_A          177 -------------------------------AEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK  224 (262)
T ss_dssp             -------------------------------CTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEEC
T ss_pred             -------------------------------cCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEe
Confidence                                           334567888888889999999999999986   256999999999975

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=7.8e-36  Score=246.85  Aligned_cols=139  Identities=42%  Similarity=0.848  Sum_probs=112.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCC-CcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRA-KSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~-~~~~~i~~~~~~~~~   80 (233)
                      ..||+|++++ ||++|++|||++.                               ++.|..... ...+++.+|..++..
T Consensus        69 ~~a~~y~~~~-Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~y~~v~~~  116 (214)
T 2bdz_A           69 TTSLQYVVDN-GVHTEREYPYEKK-------------------------------QGRCRAKDKKGPKVYITGYKYVPAN  116 (214)
T ss_dssp             HHHHHHHHHH-CEEBTTTSCCCSS-------------------------------CCCCCTTTCCSCEECCCEEEEECSS
T ss_pred             HHHHHHHHHh-CCCccccCCCCCC-------------------------------CCCCCCCCCCCceeeecCEEEeCCC
Confidence            5799999765 9999999999987                               445554333 345789999999878


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      ++++||++|++ |||+++|++..++|++|++|||.. .|.. ..+|||+|||||+                         
T Consensus       117 ~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGyg~-------------------------  168 (214)
T 2bdz_A          117 DEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG-PCGT-NTDHAVTAVGYGK-------------------------  168 (214)
T ss_dssp             BHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC-SCCS-CCCEEEEEEEECS-------------------------
T ss_pred             cHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecC-CCCC-CCCeEEEEEEcCC-------------------------
Confidence            99999999997 999999999547899999999975 4642 3455555555543                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                       +|||||||||++|||+|||||.|+.   .|+|||++.++||++
T Consensus       169 ---------------------------------~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (214)
T 2bdz_A          169 ---------------------------------TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK  211 (214)
T ss_dssp             ---------------------------------SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEEC
T ss_pred             ---------------------------------CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEe
Confidence                                             5677777779999999999999985   389999999999985

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=2.5e-35  Score=260.13  Aligned_cols=139  Identities=35%  Similarity=0.750  Sum_probs=107.7

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcC-CCCCcceEeceEEEcCC
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRY-KRAKSGAVDRGYVDIPE   79 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~-~~~~~~~~i~~~~~~~~   79 (233)
                      +..||+|++ ++||++|++|||.+.                               ++.|.. .......++.++..++.
T Consensus       219 ~~~a~~yi~-~~Gi~~e~~yPY~~~-------------------------------~~~c~~~~~~~~~~~~~~~~~~~~  266 (363)
T 3tnx_A          219 PWSALQLVA-QYGIHYRNTYPYEGV-------------------------------QRYCRSREKGPYAAKTDGVRQVQP  266 (363)
T ss_dssp             HHHHHHHHH-HTCBCBTTTSCCCSS-------------------------------CCCCCGGGGCSCSBCCCEEEEECS
T ss_pred             hHHHHhHHH-hcCccccccCCCcCc-------------------------------CCCcccCCCCCceeeccceEEcch
Confidence            357999997 569999999999987                               333332 22334456778888877


Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      .++..|+.+|++ |||+|+++++.++|++|++|||.++ |. ..++|||+|||||+                        
T Consensus       267 ~~e~~l~~~v~~-gPvsvai~a~~~~F~~Y~sGVy~~~-~~-~~lnHaV~iVGyG~------------------------  319 (363)
T 3tnx_A          267 YNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-CG-NKVDHAVAAVGYGP------------------------  319 (363)
T ss_dssp             SCHHHHHHHHTT-SCEEEEECCCSHHHHTEEEEEECCC-CC-SCCCEEEEEEEEET------------------------
T ss_pred             hhHHHHHHHHHc-CCcEEEEEecchhhhCCCCCEECCC-CC-CCCCeEEEEEEcCC------------------------
Confidence            788888888765 9999999987789999999999753 53 23455555555543                        


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---Ccccccccccccc
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPL  232 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~  232 (233)
                                                        +|||||||||++|||+|||||+||++   |+|||++.++||+
T Consensus       320 ----------------------------------~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yPi  361 (363)
T 3tnx_A          320 ----------------------------------NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV  361 (363)
T ss_dssp             ----------------------------------TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEEEE
T ss_pred             ----------------------------------CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeeecc
Confidence                                              37777777799999999999999963   4599999999997

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=3e-35  Score=243.17  Aligned_cols=139  Identities=40%  Similarity=0.766  Sum_probs=108.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCC-CCCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYK-RAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~-~~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|++++ ||++|++|||++.                               ++.|... .....+++.+|..++..
T Consensus        69 ~~a~~~~~~~-Gi~~e~~yPY~~~-------------------------------~~~C~~~~~~~~~~~i~~~~~v~~~  116 (213)
T 3ioq_A           69 LYALQYVANS-GIHLRQYYPYEGV-------------------------------QRQCRASQAKGPKVKTDGVGRVPRN  116 (213)
T ss_dssp             HHHHHHHHHH-CEEBGGGSCCCSS-------------------------------CCCCCGGGCCSCEECCCEEEECCSS
T ss_pred             HHHHHHHHHc-CCCchhccCcCCC-------------------------------CCCCCCCccCCceEEeccEEEeCCc
Confidence            5799999765 9999999999987                               4556542 23456788999999765


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      +++.|++ ++.+|||+++|++..++|+.|++|||.+ .|. ...+|||+|||||+                         
T Consensus       117 ~~~~~~~-~~~~GPV~v~i~~~~~~f~~y~~Giy~~-~~~-~~~~HaV~iVGyg~-------------------------  168 (213)
T 3ioq_A          117 NEQALIQ-RIAIQPVSIVVEAKGRAFQNYRGGIFAG-PCG-TSIDHAVAAVGYGN-------------------------  168 (213)
T ss_dssp             CHHHHHH-HHTTSCEEEEECCCSHHHHTCCSSEECC-SCC-SCCCEEEEEEEEET-------------------------
T ss_pred             hHHHHHH-HHHhCCEEEEEEechhhhhhccCCeEcC-CCC-CccCceEEEEecCC-------------------------
Confidence            6555555 5556999999999547999999999975 443 33455555555543                         


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~  233 (233)
                                                       +|||||||||++|||+|||||.|+..   |+|||++.++||++
T Consensus       169 ---------------------------------~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          169 ---------------------------------DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             ---------------------------------TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             ---------------------------------CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence                                             56777777799999999999999964   89999999999985

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=2.2e-35  Score=252.97  Aligned_cols=155  Identities=26%  Similarity=0.537  Sum_probs=116.5

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|+++ +||++|++|||.+.++.         |.....|..+..       ...|........+++.+|..++  +
T Consensus       112 ~~a~~yi~~-~Gi~~e~~yPY~~~~~~---------C~~~~~~~~~~~-------~~~c~~~~~~~~~~i~~y~~v~--~  172 (277)
T 1deu_A          112 LSVWDYAHQ-HGIPDETCNNYQAKDQE---------CDKFNQCGTCNE-------FKECHAIRNYTLWRVGDYGSLS--G  172 (277)
T ss_dssp             HHHHHHHHH-TCBCBGGGSCCCSSCCC---------CCHHHHSEEEEE-------TTEEEECSSCCCBCEEEEEEEC--S
T ss_pred             HHHHHHHHH-cCCCcCccCCCcCCCCC---------cccccccccccc-------CcccccccCcceEEeceeEecC--C
Confidence            579999974 69999999999987432         222222322111       1234333334557888898884  6


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++ .++|+.|++|||.+..|. ...+|||+|||||+                          
T Consensus       173 ~~~i~~~i~~~GPV~v~i~~-~~~f~~Y~~GIy~~~~~~-~~~~HaV~iVGyg~--------------------------  224 (277)
T 1deu_A          173 REKMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQDT-TYINHVVSVAGWGI--------------------------  224 (277)
T ss_dssp             HHHHHHHHHHHCCEEEEECC-CHHHHTCCSSEECBCCSC-CCCCEEEEEEEEEE--------------------------
T ss_pred             HHHHHHHHHHcCCEEEEEec-ccccccCcCcEECCCCCC-CcCCeEEEEEEecc--------------------------
Confidence            89999999999999999998 578999999999875543 34667777777765                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCC--------cccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNREN--------NCGVASSASFPL  232 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~--------~cgi~~~~~~~~  232 (233)
                                                 + ++.+|||||||||++|||+|||||.|+. |        .||||+++.|++
T Consensus       225 ---------------------------~-~g~~YWivkNSWG~~WGe~GY~~i~rg~-n~~g~g~~~~cgIe~~~~~~~  274 (277)
T 1deu_A          225 ---------------------------S-DGTEYWIVRNSWGEPWGERGWLRIVTST-YKDGKGARYNLAIEEHCTFGD  274 (277)
T ss_dssp             ---------------------------E-TTEEEEEEECSBCTTSTBTTEEEEECTT-HHHHTGGGTBTTTTSCEEEEE
T ss_pred             ---------------------------c-CCccEEEEEeCCCCccCCCcEEEEEcCC-CcccccccccceeccccEeec
Confidence                                       2 4567788888889999999999999997 7        899999999875

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=1.7e-34  Score=260.90  Aligned_cols=145  Identities=33%  Similarity=0.681  Sum_probs=115.1

Q ss_pred             HHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcC----C
Q psy403            4 AFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIP----E   79 (233)
Q Consensus         4 a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~----~   79 (233)
                      ||+|++ ++||++|+||||++.                               ++.|........+++.+|..++    .
T Consensus       283 a~~yi~-~~Gi~tE~~yPY~~~-------------------------------~~~C~~~~~~~~~~~~~y~~v~~~~~~  330 (441)
T 3pdf_A          283 AGKYAQ-DFGLVEEACFPYTGT-------------------------------DSPCKMKEDCFRYYSSEYHYVGGFYGG  330 (441)
T ss_dssp             TTHHHH-HTCBCBGGGSCCCSS-------------------------------CCCSCCCSSCCCBCEEEEEETTSSTTC
T ss_pred             HHHHHH-hcCCCcHHHeeeccc-------------------------------CCCCCCccccceeeeccEEEeCCccCC
Confidence            489997 469999999999987                               5566654444556778888775    3


Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      .++++||++|+++|||+|+|++ .++|++|++|||.++.|...                                     
T Consensus       331 ~~e~~ik~al~~~GPVsvai~a-~~~F~~Y~sGVy~~~~~~~~-------------------------------------  372 (441)
T 3pdf_A          331 CNEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHHTGLRDP-------------------------------------  372 (441)
T ss_dssp             CCHHHHHHHHHHHCCEEEEECC-CGGGGGCCSSEECCC---CC-------------------------------------
T ss_pred             CcHHHHHHHHHHCCCeEEEEEe-cccccccCCceEecCCCCcc-------------------------------------
Confidence            5899999999999999999999 58999999999986554310                                     


Q ss_pred             eeccCCccccCCCcc-ccccceeEEEEeecC-CCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccc
Q psy403          160 KMARNRVYYEPECNS-TQLDHAVLVVGYGTD-ENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFP  231 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~-~~~~haV~vVGyg~~-~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~  231 (233)
                                  |+. ..+||||+|||||++ .++.+|||||||||++|||+|||||+|+. |+|||++.+..+
T Consensus       373 ------------~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~-n~CGI~s~~~a~  433 (441)
T 3pdf_A          373 ------------FNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGT-DECAIESIAVAA  433 (441)
T ss_dssp             ------------CCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTSCCEEE
T ss_pred             ------------cCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCC-CccCCCCceEEe
Confidence                        111 245777777777766 37889999999999999999999999997 999999987754

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=2e-34  Score=251.90  Aligned_cols=164  Identities=27%  Similarity=0.469  Sum_probs=109.2

Q ss_pred             ChhHHHHHHhCCCcCCCCCCccc-cccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC--CCcceEeceEEEc
Q psy403            1 MDQAFQYIKDNHGIDTESSYPYE-AMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR--AKSGAVDRGYVDI   77 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~yPY~-~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~--~~~~~~i~~~~~~   77 (233)
                      +..||+|+++ +||++|+||||. +. ..+.....    .....|...  ....+++...|....  ..+.+.+..|. +
T Consensus       145 ~~~A~~yi~~-~Gi~~e~~yPY~~~~-c~~~~~~~----~~~~~C~~~--~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v  215 (325)
T 3hhi_A          145 PDRAWAYFSS-TGLVSDYCQPYPFPH-CSHHSKSK----NGYPPCSQF--NFDTPKCDYTCDDPTIPVVNYRSWTSYA-L  215 (325)
T ss_dssp             HHHHHHHHHH-TCBCBTTTSCCSSCC-CBSSSCCT----TCCCBGGGC--CCCCCCCCSSCSSTTSCCCCBCEEEEEE-E
T ss_pred             HHHHHHHHHH-hCCCcccccCCcccc-cccccccc----ccCCCCCCc--ccCCcchhhcccccccccceEEeecceE-e
Confidence            3579999975 499999999998 32 00000000    000122210  001111223343111  12234566776 5


Q ss_pred             CCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccc
Q psy403           78 PEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEG  157 (233)
Q Consensus        78 ~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G  157 (233)
                        .++++||++|+++|||+|+|++ .++|++|++|||.++.+ ...++|||+|||||+                      
T Consensus       216 --~~~~~i~~~i~~~GPV~v~i~~-~~~f~~Y~~GVy~~~~~-~~~~~HaV~iVGyG~----------------------  269 (325)
T 3hhi_A          216 --QGEDDYMRELFFRGPFEVAFDV-YEDFIAYNSGVYHHVSG-QYLGGHAVRLVGWGT----------------------  269 (325)
T ss_dssp             --CSHHHHHHHHHHHCCEEEEEEE-EHHHHTCCSSEECCCSC-CEEEEEEEEEEEEEE----------------------
T ss_pred             --CCHHHHHHHHHHCCCEEEEEEe-ccccccccCceecCCCC-CCCCCEEEEEEEEEe----------------------
Confidence              6999999999999999999999 57999999999975433 223455555555554                      


Q ss_pred             cceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL  232 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~  232 (233)
                                                      +++.+|||||||||++|||+|||||.|+. |+|||++.+.+++
T Consensus       270 --------------------------------~~g~~YWivkNSWG~~WGe~GY~~i~rg~-n~CGI~~~~~~g~  311 (325)
T 3hhi_A          270 --------------------------------SNGVPYWKIANSWNTEWGMDGYFLIRRGS-SECGIEDGGSAGI  311 (325)
T ss_dssp             --------------------------------ETTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTSCEEEEE
T ss_pred             --------------------------------cCCceEEEEEeCCCCCcccCCEEEEEcCC-CeecCccceEEee
Confidence                                            24677888888889999999999999997 9999999987654

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=1.1e-33  Score=241.18  Aligned_cols=162  Identities=26%  Similarity=0.474  Sum_probs=108.4

Q ss_pred             hhHHHHHHhCCCcCC-------CCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCC-----Ccce
Q psy403            2 DQAFQYIKDNHGIDT-------ESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRA-----KSGA   69 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~-------e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~-----~~~~   69 (233)
                      ..||+|+++ +||++       |+||||......++..-      ....|...   ...+.+...|.....     .+.+
T Consensus        83 ~~a~~y~~~-~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~------~~~~C~~~---~~~p~c~~~c~~~~~~~~~~~~~~  152 (266)
T 3cbj_A           83 AEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEAHVNG------ARPPCTGE---GDTPKCSKICEPGYSPTYKQDKHY  152 (266)
T ss_dssp             HHHHHHHHH-TCBCBCCSTTCCCSSSCCCSCCCSCCCSC------SSCCCCSC---CCCCCCCCSCCTTCCSCTGGGCBC
T ss_pred             HHHHHHHHH-hCcCcCccccccccccCcccccccccccC------CCCCCccc---cCCCccccccCCCCcceeeeeeee
Confidence            579999975 69999       99999985311000000      01112110   001112233322111     1112


Q ss_pred             EeceEEEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           70 VDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        70 ~i~~~~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .+ .++.++ .++++||++|+++|||+++|++ .++|+.|++|||.+. |.....+|||+|||||+              
T Consensus       153 ~~-~~~~v~-~~~~~i~~~i~~~GPV~v~i~~-~~~f~~Y~~Gvy~~~-~~~~~~~HaV~iVGyg~--------------  214 (266)
T 3cbj_A          153 GY-NSYSVS-NSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHV-TGEMMGGHAIRILGWGV--------------  214 (266)
T ss_dssp             BS-CCEECC-SCHHHHHHHHHHHCCEEEEEEE-EGGGGGCCSSEECCC-SSCEEEEEEEEEEEEEE--------------
T ss_pred             ee-eeEEeC-CCHHHHHHHHHhcCCEEEEEEe-ccchhhcCCeEEecC-CCCccCCeEEEEEEecc--------------
Confidence            23 344565 5899999999999999999999 579999999999754 43233456666666665              


Q ss_pred             CccccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403          150 NTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       150 g~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                                              +++.+|||||||||++|||+|||||.|+. |+|||++.+.
T Consensus       215 ----------------------------------------~~g~~yWivkNSWG~~WGe~Gy~~i~rg~-n~cgI~~~~~  253 (266)
T 3cbj_A          215 ----------------------------------------ENGTPYWLVANSWNTDWGDNGFFKILRGQ-DHCGIESEVV  253 (266)
T ss_dssp             ----------------------------------------ETTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTSCE
T ss_pred             ----------------------------------------cCCceEEEEEcCCCCccCCCCEEEEEcCC-CcccccCceE
Confidence                                                    24567888888889999999999999997 9999999998


Q ss_pred             ccc
Q psy403          230 FPL  232 (233)
Q Consensus       230 ~~~  232 (233)
                      +++
T Consensus       254 ~~~  256 (266)
T 3cbj_A          254 AGI  256 (266)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            875

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=9.8e-34  Score=246.88  Aligned_cols=164  Identities=26%  Similarity=0.483  Sum_probs=108.1

Q ss_pred             ChhHHHHHHhCCCcCCCCCC-------ccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc----e
Q psy403            1 MDQAFQYIKDNHGIDTESSY-------PYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG----A   69 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~y-------PY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~----~   69 (233)
                      +..||+|+++ +||++|+.|       ||......+...      .....|...   ...+++...|........    .
T Consensus       139 ~~~A~~yi~~-~Gi~te~~Y~~~~~c~PY~~~~c~~~~~------~~~~~C~~~---~~~~~c~~~c~~~~~~~~~~~~~  208 (317)
T 3pbh_A          139 PAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVN------GSRPPCTGE---GDTPKCSKICEPGYSPTYKQDKH  208 (317)
T ss_dssp             HHHHHHHHHH-TCEEBBCSTTCCCBSSCCCSCCCCCCCT------TCCSCCCSC---CCCCCCCCSCCSSCCSCGGGSEE
T ss_pred             HHHHHHHHHH-hCCCcchhccCCCCCcCcccCccccccc------CcCCCCCCc---CCCCcccccccCCCccceeeeee
Confidence            3579999975 599999888       998541100000      001122211   011112333432221111    1


Q ss_pred             EeceEEEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           70 VDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        70 ~i~~~~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .....+.++ .++++||++|+++|||+|+|++ +++|++|++|||.+. |.....+|||+|||||+              
T Consensus       209 ~~~~~~~v~-~~e~~i~~~i~~~GPV~v~i~~-~~~f~~Y~~GVy~~~-~~~~~~~HaV~iVGyG~--------------  271 (317)
T 3pbh_A          209 YGYNSYSVS-NSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHV-TGEMMGGHAIRILGWGV--------------  271 (317)
T ss_dssp             CBCCCEEEC-SCHHHHHHHHHHHCCEEEEEEE-EGGGGGEEEEEECCC-SCCEEEEEEEEEEEEEE--------------
T ss_pred             eeeecccCC-cHHHHHHHHHHHCCCEEEEEEe-cccccCCCCcEEccC-CCCCCCCEEEEEEEEEE--------------
Confidence            222334564 5899999999999999999999 589999999999754 43333456666666654              


Q ss_pred             CccccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403          150 NTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       150 g~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                                              +++.+|||||||||++|||+|||||.|+. |+|||++.+.
T Consensus       272 ----------------------------------------~~g~~YWivkNSWG~~WGe~GY~ri~rg~-n~CgI~~~~~  310 (317)
T 3pbh_A          272 ----------------------------------------ENGTPYWLVANSWNTDWGDNGFFKILRGQ-DHCGIESEVV  310 (317)
T ss_dssp             ----------------------------------------ETTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTSCE
T ss_pred             ----------------------------------------eCCeeEEEEEcCCCCCcCCCcEEEEEcCC-CcccCCCceE
Confidence                                                    24677888888889999999999999997 9999999887


Q ss_pred             ccc
Q psy403          230 FPL  232 (233)
Q Consensus       230 ~~~  232 (233)
                      ..+
T Consensus       311 a~~  313 (317)
T 3pbh_A          311 AGI  313 (317)
T ss_dssp             ECC
T ss_pred             eee
Confidence            643

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.98  E-value=2e-32  Score=231.86  Aligned_cols=164  Identities=26%  Similarity=0.510  Sum_probs=106.3

Q ss_pred             ChhHHHHHHhCCCcCCCCCC-------ccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcc----e
Q psy403            1 MDQAFQYIKDNHGIDTESSY-------PYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSG----A   69 (233)
Q Consensus         1 ~~~a~~y~~~~~Gi~~e~~y-------PY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~----~   69 (233)
                      +..||+|+++ +||++|+.|       ||......+...-      ....|.....  ..+.+...|........    .
T Consensus        77 ~~~a~~yi~~-~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~------~~~~C~~~~~--~~~~c~~~c~~~~~~~~~~~~~  147 (254)
T 3qsd_A           77 LGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKG------KYPPCGSKIY--KTPRCKQTCQKKYKTPYTQDKH  147 (254)
T ss_dssp             HHHHHHHHHH-TCBCBCCCTTTCCSSSCCSSCCCBCSSCS------SSCBCCSCCC--CCCCCCCCCCTTCCSCGGGGCB
T ss_pred             HHHHHHHHHH-cCCCcccccccCcCcCCcccccccccccC------cCCCCccccc--CCccccccccCCccceeeeeee
Confidence            3579999975 599998887       9974310000000      0011211100  01112334442221111    1


Q ss_pred             EeceEEEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           70 VDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        70 ~i~~~~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .....+.++ .++++||++|+++|||+++|++ .++|++|++|||.++.+ ....+|||+|||||+              
T Consensus       148 ~~~~~~~~~-~~~~~i~~~l~~~gPv~~~~~~-~~~f~~y~~Gi~~~~~~-~~~~~Hav~iVGyg~--------------  210 (254)
T 3qsd_A          148 RGKSSYNVK-NDEKAIQKEIMKYGPVEAGFTV-YEDFLNYKSGIYKHITG-ETLGGHAIRIIGWGV--------------  210 (254)
T ss_dssp             CCSEEEECC-SCHHHHHHHHHHHCCEEEEEEE-EGGGGGCCSSEECCCSS-CEEEEEEEEEEEEEE--------------
T ss_pred             eeeeeEecC-CcHHHHHHHHHHcCCEEEEEEe-ccccccccCCeeccCCC-CCCCCeEEEEEEEee--------------
Confidence            112234564 4899999999999999999999 57999999999986433 223456666666665              


Q ss_pred             CccccccccceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403          150 NTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       150 g~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                                              +++.+|||||||||++|||+|||||.|+. |+|||++.+.
T Consensus       211 ----------------------------------------~~g~~ywivkNSWG~~WG~~Gy~~i~rg~-n~CgI~~~~~  249 (254)
T 3qsd_A          211 ----------------------------------------ENKAPYWLIANSWNEDWGENGYFRIVRGR-DECSIESEVT  249 (254)
T ss_dssp             ----------------------------------------ETTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTSSEE
T ss_pred             ----------------------------------------cCCeeEEEEEeCCCCCcccCCeEEEEcCC-CeecCCCceE
Confidence                                                    24567888888889999999999999997 9999999887


Q ss_pred             cc
Q psy403          230 FP  231 (233)
Q Consensus       230 ~~  231 (233)
                      ..
T Consensus       250 ~~  251 (254)
T 3qsd_A          250 AG  251 (254)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.97  E-value=7.6e-31  Score=223.40  Aligned_cols=161  Identities=29%  Similarity=0.482  Sum_probs=98.6

Q ss_pred             hHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccc-cccCCCCCcCCCCCcceEeceEEEcCC--
Q psy403            3 QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVT-VTSGDDNCRYKRAKSGAVDRGYVDIPE--   79 (233)
Q Consensus         3 ~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~-~~~~~~~C~~~~~~~~~~i~~~~~~~~--   79 (233)
                      .+++|++++.||++|++|||+....             ...|+....... ...+...|........+++.+|..++.  
T Consensus        82 ~~~~~i~~~Ggi~~e~~yPY~~~~~-------------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  148 (265)
T 2wbf_X           82 EFLQIIEDYGFLPAESNYPYNYVKV-------------GEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESER  148 (265)
T ss_dssp             HHHHHHHHHCCCCBTTTSCCCGGGT-------------TSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGG
T ss_pred             HHHHHHHHcCCCCCccccCCcCCCC-------------CCCCCCccccccccccccccccccCCCceeecCCceEeeccc
Confidence            4567886554599999999986410             011221110000 000000011111122346677776643  


Q ss_pred             --Cc----HHHHHHHHHhcCCeEEEEeccCccccccc-cceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc
Q psy403           80 --GD----EYKLKAAVATIGPVSIAIDASHQSFQFYS-EGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT  152 (233)
Q Consensus        80 --~~----~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~-~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~  152 (233)
                        .+    +++||++|+++|||+++|++.  +|+.|+ +|++....|....++|||+|||||++.               
T Consensus       149 ~~~~~~~~~~~ik~~i~~~GPV~v~i~~~--~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~---------------  211 (265)
T 2wbf_X          149 FHDNMDAFVKIIKTEVMNKGSVIAYIKAE--NVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYV---------------  211 (265)
T ss_dssp             GTTCHHHHHHHHHHHHHHHSCEEEEECGG--GGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEE---------------
T ss_pred             cccchhhHHHHHHHHHHhcCCEEEEEEcc--cccccccCCcEEcCCCCCCcCCEEEEEEEEeCCc---------------
Confidence              23    478999999999999999983  577775 565544457644566777777776510               


Q ss_pred             ccccccceeccCCccccCCCccccccceeEEEEeecCCCC--cceEEEeccCCCCCCCCceEEEEecCCCccccccccc
Q psy403          153 WGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENG--NDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSAS  229 (233)
Q Consensus       153 wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~--~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~  229 (233)
                                                          .+++  .+|||||||||++|||+|||||+|+..|+|||+..+.
T Consensus       212 ------------------------------------~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~  254 (265)
T 2wbf_X          212 ------------------------------------NSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHS  254 (265)
T ss_dssp             ------------------------------------CTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCE
T ss_pred             ------------------------------------ccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEE
Confidence                                                0122  5899999999999999999999874348999665433

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.96  E-value=8.4e-30  Score=219.77  Aligned_cols=146  Identities=21%  Similarity=0.275  Sum_probs=110.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhh-hhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLT-ICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~-~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~   80 (233)
                      ..||+|+++ +||++|++|||++.+....      .|.-.. .|..+.       ....|..  ....+++.+|..|+. 
T Consensus       127 ~~A~~yi~~-~Gi~~e~~yPY~~~~~~~~------~C~~~~~~~~~~~-------p~~~C~~--~~~~~~i~~y~~v~~-  189 (291)
T 3ois_A          127 RDGIKVLHK-LGVCPEKEWPYGDTPADPR------TEEFPPGAPASKK-------PSDQCYK--DAQNYKITEYSRVAQ-  189 (291)
T ss_dssp             HHHHHHHHH-TCCCBGGGSCCCCCCCCTT------TCSCCTTCGGGSC-------CCHHHHH--HHGGGCCCEEEECCS-
T ss_pred             HHHHHHHHH-hCCCCHhhCCCCCCccccc------cccccccccccCC-------CCHHHHh--hcccceeccEEEcCc-
Confidence            579999975 5999999999997631100      010000 000000       0223432  224578999999975 


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCcccccccc--ceEeCCCCCCCC-CCeeEEEeeeeecCCCCceeEEeecCCccccccc
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSE--GVYYEPECNSTQ-LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEG  157 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~--Giy~~~~c~~~~-~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G  157 (233)
                      ++++||++|+++|||+++|++ +++|+.|++  |||..+.|.... .+|||+||||++   +++|||||||||+.||++|
T Consensus       190 ~e~~i~~al~~~gPV~v~~~~-~~~f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~~---~~~ywivkNSWG~~WG~~G  265 (291)
T 3ois_A          190 DIDHLKACLAVGSPFVFGFSV-YNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDD---EIRHFRIRNSWGNNVGEDG  265 (291)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEE-EHHHHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEET---TTTEEEEECSBCTTSTBTT
T ss_pred             CHHHHHHHHHcCCCEEEEEEe-ccchhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEeC---CCCEEEEEeCCCCCCCCCc
Confidence            999999999999999999999 579999998  999887776543 599999999985   7899999999999999999


Q ss_pred             cceeccCCccc
Q psy403          158 YIKMARNRVYY  168 (233)
Q Consensus       158 ~~~~~r~gi~~  168 (233)
                      ||++.|+-+..
T Consensus       266 y~~i~~~~~~~  276 (291)
T 3ois_A          266 YFWMPYEYISN  276 (291)
T ss_dssp             EEEEEHHHHTC
T ss_pred             EEEEEHHHhcC
Confidence            99998887653

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.79  E-value=1e-19  Score=163.82  Aligned_cols=110  Identities=20%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             EEEcCCCcH-HHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc
Q psy403           74 YVDIPEGDE-YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT  152 (233)
Q Consensus        74 ~~~~~~~~~-~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~  152 (233)
                      |..+|.... +.++++|.+.|||.++++++.  +.++++|||....|..+.        .+|.+....            
T Consensus       299 y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~--~~~~k~GI~~~~~~~~~~--------~fg~~~~~m------------  356 (453)
T 2cb5_A          299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGK--HFNSKLGLSDMNLYDHEL--------VFGVSLKNM------------  356 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTT--TEETTTTEECTTSBCHHH--------HHSCCSCSS------------
T ss_pred             ccccCHHHHHHHHHHHHHcCCCEEEEEEeCh--hhccCCcEEcCccccchh--------hcCcccccc------------
Confidence            445543222 455678999999999999964  445599999754442110        001100000            


Q ss_pred             ccccccceeccCCccccCCCccccccceeEEEEee--cCCCCc-ceEEEeccCCCCCCCCceEEEEec
Q psy403          153 WGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYG--TDENGN-DYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       153 wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg--~~~~~~-~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                            =+-.|-      ......+||||++||||  .+.+|+ +|||||||||++||++||++|.|+
T Consensus       357 ------~KaeRl------~~~~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          357 ------NKAERL------TFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             ------CHHHHH------HTTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             ------CHHHHh------hccCCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh
Confidence                  000000      00113578999999999  776777 999999999999999999999986

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.67  E-value=1.5e-16  Score=143.36  Aligned_cols=107  Identities=20%  Similarity=0.279  Sum_probs=73.8

Q ss_pred             EEEcCCCcH--HHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCc
Q psy403           74 YVDIPEGDE--YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNT  151 (233)
Q Consensus        74 ~~~~~~~~~--~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~  151 (233)
                      |..+|. ++  +.++++|...|||.++++++  .|.+|++||+....|....         +|.+. +    +  +    
T Consensus       303 y~Nvp~-d~l~~~~~~aL~~g~PV~~~~Dv~--~~~~~~~GI~~~~~~~~~~---------fg~~~-~----m--~----  359 (457)
T 2e01_A          303 YLNVDN-ETLSKLVVKRLQNNKAVFFGSHTP--KFMDKKTGVMDIELWNYPA---------IGYNL-P----Q--Q----  359 (457)
T ss_dssp             EEECCH-HHHHHHHHHHHHTTCCEEEEECTT--TTEETTTTEECTTSBCGGG---------GTCCC-C----C--C----
T ss_pred             EEEcCH-HHHHHHHHHHHHhCCCEEEEEEcC--HhHcccCceecccccchhh---------cCccc-c----c--C----
Confidence            666643 32  55667889999999999995  3778899999643332111         12100 0    0  0    


Q ss_pred             cccccccceeccCCccccCCCccccccceeEEEEeecCCCCc--ceEEEeccCCCCCCCCceEEEEec
Q psy403          152 TWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGN--DYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       152 ~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~--~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                              +-.|      -.|....+||||++||||.+.+|+  +|||||||||++||++||++|.|+
T Consensus       360 --------KaeR------l~~~~s~~~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          360 --------KASR------IRYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             --------HHHH------HHTTSCCCCEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             --------HHHh------hccCCCCCCeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh
Confidence                    0000      012224679999999999987788  999999999999999999999986

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.65  E-value=5.4e-17  Score=139.60  Aligned_cols=56  Identities=30%  Similarity=0.433  Sum_probs=48.8

Q ss_pred             ceeccC--CccccCCCcccc-ccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEec
Q psy403          159 IKMARN--RVYYEPECNSTQ-LDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       159 ~~~~r~--gi~~~~~c~~~~-~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                      |+.|++  ||+..+.|.... ++|||+|||||   ++++|||||||||++|||+|||||.|+
T Consensus       214 f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~---~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          214 WVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD---DEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             HHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEE---TTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             hhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEe---CCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            666776  899887776544 59999999998   468999999999999999999999997

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.42  E-value=9.4e-14  Score=122.68  Aligned_cols=43  Identities=35%  Similarity=0.636  Sum_probs=40.1

Q ss_pred             ccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEec
Q psy403          175 TQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN  217 (233)
Q Consensus       175 ~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~  217 (233)
                      +..||||++||||.++++++|||||||||++||++||++|.|+
T Consensus       314 t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          314 TTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             SCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEHH
T ss_pred             CcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecHH
Confidence            4579999999999988889999999999999999999999885

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.30  E-value=4.5e-14  Score=122.65  Aligned_cols=153  Identities=22%  Similarity=0.236  Sum_probs=92.6

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...|||.          .+.++++++|+.|..++++... .+.+.     ..+...++++|.++....|--.+.-.-
T Consensus        96 ~lP~~~DwR~----------~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~  165 (316)
T 1cs8_A           96 EAPRSVDWRE----------KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL  165 (316)
T ss_dssp             CCCSCEEGGG----------GTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC
T ss_pred             CCCCcEecCC----------CCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhccccCCCCCCCCC
Confidence            4776666663          3678888999999988865442 11111     123456899999886432211110000


Q ss_pred             cCcccccc--ccceEeC---------CCCCCCCCCeeEEEeeeeecCC---CCceeEEeecCCccccccc--cceeccCC
Q psy403          102 SHQSFQFY--SEGVYYE---------PECNSTQLDHAVLVVGYGTDEN---GNDYWLVKNSWNTTWGDEG--YIKMARNR  165 (233)
Q Consensus       102 ~~~~f~~Y--~~Giy~~---------~~c~~~~~~Hav~ivGyg~~~~---~~~ywivkNSwg~~wg~~G--~~~~~r~g  165 (233)
                      ....|.+.  ..||...         ..|........+.|.+|.....   .....|.++++.+.-.+..  .|+.|++|
T Consensus       166 ~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~G  245 (316)
T 1cs8_A          166 MDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG  245 (316)
T ss_dssp             HHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEE
T ss_pred             HHHHHHHHHHhCCcCchhccCCCCCCCCcCCCCccceeEeccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCc
Confidence            12234433  2455542         3465433345667778866432   1223445567666555544  48899999


Q ss_pred             ccccCCCccccccceeEEEEeecCC
Q psy403          166 VYYEPECNSTQLDHAVLVVGYGTDE  190 (233)
Q Consensus       166 i~~~~~c~~~~~~haV~vVGyg~~~  190 (233)
                      |+..+.|+...+||||+|||||.+.
T Consensus       246 vy~~~~c~~~~~~HaV~iVGygd~~  270 (316)
T 1cs8_A          246 IYFEPDCSSEDMDHGVLVVGYGFES  270 (316)
T ss_dssp             EECCTTCCSSCCCEEEEEEEEEEEC
T ss_pred             eECCCCCCCCCCCEEEEEEEecCCc
Confidence            9988889987899999999999874

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.29  E-value=1.2e-13  Score=119.93  Aligned_cols=147  Identities=21%  Similarity=0.224  Sum_probs=87.0

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHH-HhcCCeEEEEe
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAV-ATIGPVSIAID  100 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i-~~~GPv~v~~~  100 (233)
                      .+|...|||.          ++.++++++|+.|..++++... .+.+.     ..+...++++|.++. ...|--.+.-.
T Consensus        98 ~lP~~~DwR~----------~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~~~~gC~GG  167 (315)
T 2c0y_A           98 ILPDSVDWRE----------KGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGG  167 (315)
T ss_dssp             CCCSCEETTT----------TTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCB
T ss_pred             CCCCeEecCC----------CCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhcccccCCCCCCCC
Confidence            4676666663          3678888999999988865442 11111     123456899999886 32111111000


Q ss_pred             ccCccccccc--cceEeC---------CCCCCCCCCeeEEEeeeeecCCC----CceeEEeecCCccccccc--cceecc
Q psy403          101 ASHQSFQFYS--EGVYYE---------PECNSTQLDHAVLVVGYGTDENG----NDYWLVKNSWNTTWGDEG--YIKMAR  163 (233)
Q Consensus       101 ~~~~~f~~Y~--~Giy~~---------~~c~~~~~~Hav~ivGyg~~~~~----~~ywivkNSwg~~wg~~G--~~~~~r  163 (233)
                      -....|.+..  .||...         ..|........+.|.||.....+    ....|.++++.+.-.+..  .|+.|+
T Consensus       168 ~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~  247 (315)
T 2c0y_A          168 FMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR  247 (315)
T ss_dssp             CHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEE
T ss_pred             CHHHHHHHHHHhCCcCchhcCCCccCCCCcccCCcccccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccC
Confidence            0122344332  366542         34654334466778888764322    223445566655544543  588999


Q ss_pred             CCccccCCCccccccceeEEEE
Q psy403          164 NRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       164 ~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      +||+..+.|+. .++|||+|||
T Consensus       248 ~Gvy~~~~c~~-~~~HaV~iVG  268 (315)
T 2c0y_A          248 SGVYYEPSCTQ-NVNHGVLVVG  268 (315)
T ss_dssp             EEEECCTTCCS-CCCEEEEEEE
T ss_pred             CCcccCCCCCC-cCCEEEEEEE
Confidence            99998888987 7899999976

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.27  E-value=5.5e-13  Score=116.47  Aligned_cols=147  Identities=20%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EE--cCCCcHHHHHHHHHhcCCeEEEE
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VD--IPEGDEYKLKAAVATIGPVSIAI   99 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~--~~~~~~~~i~~~i~~~GPv~v~~   99 (233)
                      .+|...|||.          .+.++++++|+.|..++++... .+.+.     ..  +...++++|.++.....-..-+.
T Consensus       115 ~lP~s~DwR~----------~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~LvdC~~~~~GC~GG~  184 (331)
T 3qj3_A          115 RYPASFDWRD----------QGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGW  184 (331)
T ss_dssp             CCCSSEEGGG----------GTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHHHHCTTSCGGGCCC
T ss_pred             CCCcceeccc----------CCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHhhhccCCCCCCCCC
Confidence            4787677763          3578889999999988875542 11111     11  23468888888753211100000


Q ss_pred             eccCccccccc--cceEe---------CCCCCCCCCCeeEEEeeeeecCCC----CceeEEeecCCcccccccc-ceecc
Q psy403          100 DASHQSFQFYS--EGVYY---------EPECNSTQLDHAVLVVGYGTDENG----NDYWLVKNSWNTTWGDEGY-IKMAR  163 (233)
Q Consensus       100 ~~~~~~f~~Y~--~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~----~~ywivkNSwg~~wg~~G~-~~~~r  163 (233)
                        ....|.+..  +||..         ...|........+.|.+|.....+    ....|.++++.+.-.+... |+.|+
T Consensus       185 --~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~  262 (331)
T 3qj3_A          185 --MNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYS  262 (331)
T ss_dssp             --HHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEE
T ss_pred             --HHHHHHHHHHcCCcCcccccCccCCCCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCCCEEEEEEccccccccc
Confidence              011232221  24433         234654445566778888764322    2234455666655544433 89999


Q ss_pred             CCccccCCCccccccceeEEEEe
Q psy403          164 NRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       164 ~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      +||+..+.|+...++|||+||||
T Consensus       263 ~Gvy~~~~c~~~~~~HaV~iVGy  285 (331)
T 3qj3_A          263 GGVYYNPTCETNKFTHAVLIVGY  285 (331)
T ss_dssp             EEEECCTTCCSSCCCEEEEEEEE
T ss_pred             CceEeCCCCCCCcCCEEEEEEEE
Confidence            99999989988889999999998

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.26  E-value=1.2e-13  Score=119.78  Aligned_cols=148  Identities=22%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...|||.          ++.++++++|+.|..++++... .+.+.     ..+...++++|.++....|--.+.-.-
T Consensus        91 ~lP~~~DwR~----------~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~  160 (310)
T 2o6x_A           91 AVPDKIDWRE----------SGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGL  160 (310)
T ss_dssp             -CCSCEEGGG----------GTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCC
T ss_pred             CCCCeEecCc----------CCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCC
Confidence            3676666663          2567888899999988865442 11111     123356899999886422110010000


Q ss_pred             cCcccccc-ccceEe---------CCCCCCCCCCeeEEEeeeeecCCC----CceeEEeecCCccccccc-cceeccCCc
Q psy403          102 SHQSFQFY-SEGVYY---------EPECNSTQLDHAVLVVGYGTDENG----NDYWLVKNSWNTTWGDEG-YIKMARNRV  166 (233)
Q Consensus       102 ~~~~f~~Y-~~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~----~~ywivkNSwg~~wg~~G-~~~~~r~gi  166 (233)
                      ....|.+. ..||..         ...|........+.|.+|.....+    ....|.++++.+.-.+.. .|+.|++||
T Consensus       161 ~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gv  240 (310)
T 2o6x_A          161 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI  240 (310)
T ss_dssp             HHHHHHHHTTSCBCBTTTSCCCSSCCCCCCCGGGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEE
T ss_pred             HHHHHHHHHHCCcCchhcCCCCCCCCCccCCCCCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCce
Confidence            01123222 234443         235654334567788898764322    223445566665544443 588999999


Q ss_pred             cccCCCccccccceeEEEE
Q psy403          167 YYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       167 ~~~~~c~~~~~~haV~vVG  185 (233)
                      +....|+...++|||+|||
T Consensus       241 y~~~~c~~~~~~HaV~iVG  259 (310)
T 2o6x_A          241 YQSQTCSPLRVNHAVLAVG  259 (310)
T ss_dssp             ECCSSCCTTCCCEEEEEEE
T ss_pred             ecCCCCCCCCCCEEEEEEE
Confidence            9888898878999999986

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.25  E-value=3.9e-12  Score=104.55  Aligned_cols=134  Identities=23%  Similarity=0.241  Sum_probs=75.2

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc----cceEe---
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS----EGVYY---  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~----~Giy~---  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++.....-..-+.  ....|.+..    +|+..   
T Consensus        11 g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~--~~~a~~y~~~~~~gGi~~e~~   88 (215)
T 3i06_A           11 GAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGL--MNNAFEWIVQENNGAVYTEDS   88 (215)
T ss_dssp             TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCC--HHHHHHHHHHHSTTEEEC-CC
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCC--HHHHHHHHHHhccccccccCc
Confidence            567888889999988765442 11111     1223468888887732100000000  011222221    13432   


Q ss_pred             ---------CCCCCCCCCCeeEEEeeeeecCCC---CceeEEeecCCccccccccceeccCCccccCCCccccccceeEE
Q psy403          116 ---------EPECNSTQLDHAVLVVGYGTDENG---NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLV  183 (233)
Q Consensus       116 ---------~~~c~~~~~~Hav~ivGyg~~~~~---~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~~~~haV~v  183 (233)
                               .+.|..........|.+|......   ....|.++++...-.+...|+.|++||+.  .|....++|||+|
T Consensus        89 yPY~~~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~--~~~~~~~~HaV~i  166 (215)
T 3i06_A           89 YPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT--SCVSEQLDHGVLL  166 (215)
T ss_dssp             SCCCCTTSCCCCCCCSSCCEEEEEEEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC--SCCCSCCCEEEEE
T ss_pred             cCCcCCCCCCCccccCCcccceEecceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCccc--CCCCCccCcEEEE
Confidence                     124654444456778888764322   22345566666554444568899999995  4777788999999


Q ss_pred             EEe
Q psy403          184 VGY  186 (233)
Q Consensus       184 VGy  186 (233)
                      |||
T Consensus       167 VGy  169 (215)
T 3i06_A          167 VGY  169 (215)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.25  E-value=1.5e-13  Score=119.92  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=88.2

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...|||.          + .++++++|+.|..++++... .+.+.     ..+...++++|.++....|--.+.=..
T Consensus       115 ~lP~~~DwR~----------~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~~~~g~~GC~GG~  183 (329)
T 3qt4_A          115 PLAASVDWRS----------N-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGW  183 (329)
T ss_dssp             CCCSCEECTT----------T-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCTTBCCC
T ss_pred             CCCCCEEccc----------c-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhccccCCCCCCCCC
Confidence            5777667763          2 67888899999988875542 11111     123356899998886532211110000


Q ss_pred             cCccccccc-cceEe---------CCCCCCCCCCeeEEEeeeeecCCC----CceeEEeecCCccccccc-cceeccCCc
Q psy403          102 SHQSFQFYS-EGVYY---------EPECNSTQLDHAVLVVGYGTDENG----NDYWLVKNSWNTTWGDEG-YIKMARNRV  166 (233)
Q Consensus       102 ~~~~f~~Y~-~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~----~~ywivkNSwg~~wg~~G-~~~~~r~gi  166 (233)
                      ....|.+.. .||..         ...|........+.|.+|.....+    ....|.++++.+.-.+.. .|+.|++||
T Consensus       184 ~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GV  263 (329)
T 3qt4_A          184 MDSAFSYIHDYGIMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL  263 (329)
T ss_dssp             HHHHHHHHHHSCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEE
T ss_pred             hhHHHHHHHHcCCCcHHHeeeecCCCCCCCCcccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCce
Confidence            011222211 13332         235654444455677788764322    223455667766555554 689999999


Q ss_pred             cccCCCccccccceeEEEEe
Q psy403          167 YYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       167 ~~~~~c~~~~~~haV~vVGy  186 (233)
                      +..+.|+...+||||+||||
T Consensus       264 y~~~~c~~~~~~HaV~iVGy  283 (329)
T 3qt4_A          264 FYDQTCNQSDLNHGVLVVGY  283 (329)
T ss_dssp             ECCSSCCSSCCCEEEEEEEE
T ss_pred             eecCCCCCCcCCEEEEEEEE
Confidence            99989988889999999998

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.24  E-value=2.1e-13  Score=112.61  Aligned_cols=142  Identities=22%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCcccccc--ccceEeC----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFY--SEGVYYE----  116 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y--~~Giy~~----  116 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++....|--.+.-.-....|.+.  ..||...    
T Consensus        11 ~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~~Gi~~e~~yP   90 (220)
T 2xu3_A           11 GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP   90 (220)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHHTCEEBTTTSC
T ss_pred             CCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHhCCcccccccC
Confidence            567788889999988765431 11111     12335688988888642111000000011234433  2466542    


Q ss_pred             -----CCCCCCCCCeeEEEeeeeecCC---CCceeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEEe
Q psy403          117 -----PECNSTQLDHAVLVVGYGTDEN---GNDYWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       117 -----~~c~~~~~~Hav~ivGyg~~~~---~~~ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                           ..|........+.|.+|.....   .....|.++++...-.+..  .|+.|++||+..+.|+...++|||+||||
T Consensus        91 Y~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGy  170 (220)
T 2xu3_A           91 YEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGY  170 (220)
T ss_dssp             CCSSCCCCCCCGGGEEECCSEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEE
T ss_pred             CcccCcCccCCCCCcceeeeeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCCCCCeEEEEEEc
Confidence                 2454333345566777765332   1223455566655444433  48889999998878988789999999999


Q ss_pred             ecCC
Q psy403          187 GTDE  190 (233)
Q Consensus       187 g~~~  190 (233)
                      |.+.
T Consensus       171 gd~~  174 (220)
T 2xu3_A          171 GFES  174 (220)
T ss_dssp             EECC
T ss_pred             CCcc
Confidence            9864

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.24  E-value=1.1e-13  Score=120.12  Aligned_cols=145  Identities=23%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             CchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEecc
Q psy403           29 LPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDAS  102 (233)
Q Consensus        29 ~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~  102 (233)
                      +|...|||.          ++.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+.  .
T Consensus       100 lP~~~DwR~----------~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~gC~GG~--~  167 (314)
T 1by8_A          100 APDSVDYRK----------KGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY--M  167 (314)
T ss_dssp             CCSCCBSTT----------TTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCTTSCGGGCCC--S
T ss_pred             CCCeEeCCC----------CCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCcCCC--H
Confidence            676666663          3678888999999988865442 11111     1233568888887742000000000  1


Q ss_pred             Cccccccc--cceEe---------CCCCCCCCCCeeEEEeeeeecCCC----CceeEEeecCCccccccc--cceeccCC
Q psy403          103 HQSFQFYS--EGVYY---------EPECNSTQLDHAVLVVGYGTDENG----NDYWLVKNSWNTTWGDEG--YIKMARNR  165 (233)
Q Consensus       103 ~~~f~~Y~--~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~----~~ywivkNSwg~~wg~~G--~~~~~r~g  165 (233)
                      ...|.+..  .||..         ...|........+.|.||.....+    ....|.++++.+.-.+..  .|+.|++|
T Consensus       168 ~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~G  247 (314)
T 1by8_A          168 TNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKG  247 (314)
T ss_dssp             HHHHHHHHHTTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEE
T ss_pred             HHHHHHHHHcCCcCcHhhCCCCCCCCCcCCCCccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCc
Confidence            12333322  34443         235654333445667787654321    223445566665555554  58899999


Q ss_pred             ccccCCCccccccceeEEEE
Q psy403          166 VYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       166 i~~~~~c~~~~~~haV~vVG  185 (233)
                      |+..+.|+...++|||+|||
T Consensus       248 vy~~~~c~~~~~~HaV~iVG  267 (314)
T 1by8_A          248 VYYDESCNSDNLNHAVLAVG  267 (314)
T ss_dssp             CBCCTTCCSSCCCEEEEEEE
T ss_pred             eecCCCCCCCCCCeEEEEEE
Confidence            99888899878999999986

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.19  E-value=3.3e-12  Score=110.63  Aligned_cols=143  Identities=17%  Similarity=0.107  Sum_probs=85.0

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHh-cCCeEEEEe
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVAT-IGPVSIAID  100 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~-~GPv~v~~~  100 (233)
                      .+|...|||.          .+.++++++|+.|..++++... .+.+.     ..+...++++|.++. + .|= .-+. 
T Consensus        89 ~lP~~~DwR~----------~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~-~~~GC-~GG~-  155 (312)
T 1xkg_A           89 NAPAEIDLRQ----------MRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA-SQHGC-HGDT-  155 (312)
T ss_dssp             CCCSCEETTT----------TTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHT-CSSTT-BCCC-
T ss_pred             cCCCcccccc----------CCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhcc-CCCCC-CCCC-
Confidence            4676666663          3578888999999988865442 11111     123456899998885 2 111 0000 


Q ss_pred             ccCccccccc-cceEe---------CCCCCCCCCCeeEEEeeeeecCCC----CceeEEe-ecCCccccccc---cceec
Q psy403          101 ASHQSFQFYS-EGVYY---------EPECNSTQLDHAVLVVGYGTDENG----NDYWLVK-NSWNTTWGDEG---YIKMA  162 (233)
Q Consensus       101 ~~~~~f~~Y~-~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~----~~ywivk-NSwg~~wg~~G---~~~~~  162 (233)
                       ....|.+.. .||..         ...|. ......+.|.+|......    ....|.+ +++.+.-.+..   -|+.|
T Consensus       156 -~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~-~~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y  233 (312)
T 1xkg_A          156 -IPRGIEYIQHNGVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHY  233 (312)
T ss_dssp             -HHHHHHHHHHHCEEBGGGSCCCSSCCCCC-CCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTC
T ss_pred             -HHHHHHHHHHcCCCccccCCccCCCCCCC-CCCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccccccccc
Confidence             011232221 34432         23576 333456778888654321    2234555 67766554443   58899


Q ss_pred             cCCccccCCCc-cccccceeEEEEe
Q psy403          163 RNRVYYEPECN-STQLDHAVLVVGY  186 (233)
Q Consensus       163 r~gi~~~~~c~-~~~~~haV~vVGy  186 (233)
                      ++||+..+.|+ ... +|||+||||
T Consensus       234 ~~GVy~~~~c~~~~~-~HaV~iVGy  257 (312)
T 1xkg_A          234 DGRTIIQRDNGYQPN-YHAVNIVGY  257 (312)
T ss_dssp             CSSSCBCCCCSSCCE-EEEEEEEEE
T ss_pred             CCcEEcCCCCCCCcC-ceEEEEEEE
Confidence            99999988898 556 999999998

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.19  E-value=8.2e-12  Score=103.13  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=71.7

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec--cCccccccc--cceEe---
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA--SHQSFQFYS--EGVYY---  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~--~~~~f~~Y~--~Giy~---  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++...    .-+.+-  ....|.+..  .||..   
T Consensus        11 ~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~----~~gC~GG~~~~a~~~~~~~~Gi~~e~~   86 (222)
T 3u8e_A           11 GAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX----XXXXXGGDADDAFRWVITNGGIASDAN   86 (222)
T ss_dssp             TCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC----------CCCHHHHHHHHHHHTCBCBTTT
T ss_pred             CCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCc----ccccCCCCHHHHHHHHHHcCCccchhc
Confidence            567788889999999887652 11111     12235688888877532    111111  012233221  14443   


Q ss_pred             ------CCCCCCCCCCeeEEEeeeeecCCCCcee--EEeecCCccccccc--cceeccC-CccccCCCcc--ccccceeE
Q psy403          116 ------EPECNSTQLDHAVLVVGYGTDENGNDYW--LVKNSWNTTWGDEG--YIKMARN-RVYYEPECNS--TQLDHAVL  182 (233)
Q Consensus       116 ------~~~c~~~~~~Hav~ivGyg~~~~~~~yw--ivkNSwg~~wg~~G--~~~~~r~-gi~~~~~c~~--~~~~haV~  182 (233)
                            ...|...... .+.|.+|.......+..  .|++++...-.+..  .|+.|++ ||+..+.|..  ..++|||+
T Consensus        87 yPY~~~~~~C~~~~~~-~~~i~~~~~v~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~~~~~~HaV~  165 (222)
T 3u8e_A           87 YPYTGVDGTCDLNKPI-AARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVL  165 (222)
T ss_dssp             SCCCSSCCCCCCCSCC-CBCCCEEEECCSCHHHHHHHHHHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCCGGGCCEEEE
T ss_pred             CCCcccCCccccCCCC-eEEEccEEEeCCcHHHHHHHHhCCCEEEEEEecChhhhcEeCCceECCCcccCCCCcCCEEEE
Confidence                  2346433322 55666776532111111  13555444333432  5889999 9998878876  47899999


Q ss_pred             EEE
Q psy403          183 VVG  185 (233)
Q Consensus       183 vVG  185 (233)
                      |||
T Consensus       166 iVG  168 (222)
T 3u8e_A          166 IVG  168 (222)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            976

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.18  E-value=5.6e-12  Score=103.54  Aligned_cols=136  Identities=24%  Similarity=0.299  Sum_probs=77.8

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEeC----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYYE----  116 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~~----  116 (233)
                      +.++++++|+.|..++++... .+...     ..+...++++|.++.....-..-+. . ...|.+..  .||...    
T Consensus        11 ~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~-~-~~a~~~~~~~~Gi~~e~~yP   88 (215)
T 3kwz_A           11 GYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY-M-TNAFQYVQKNRGIDSEDAYP   88 (215)
T ss_dssp             TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHTCEEBTTTSC
T ss_pred             CCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCC-H-HHHHHHHHHhCCccccccCC
Confidence            567888889999988765431 11111     1223457888887753111100000 0 12233221  244432    


Q ss_pred             -----CCCCCCCCCeeEEEeeeeecCCCC----ceeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEE
Q psy403          117 -----PECNSTQLDHAVLVVGYGTDENGN----DYWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       117 -----~~c~~~~~~Hav~ivGyg~~~~~~----~ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                           ..|..........+.+|.......    ...|.++++...-.+..  .|+.|++||+..+.|+...++|||+|||
T Consensus        89 Y~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~~~HaV~iVG  168 (215)
T 3kwz_A           89 YVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVG  168 (215)
T ss_dssp             CCSSCCCCCCCGGGEEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEE
T ss_pred             CccCCCccccCCCCceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCCChhhCEEEEEE
Confidence                 346443444566777877643211    22344556655444444  5889999999988898888999999999


Q ss_pred             e
Q psy403          186 Y  186 (233)
Q Consensus       186 y  186 (233)
                      |
T Consensus       169 y  169 (215)
T 3kwz_A          169 Y  169 (215)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.17  E-value=1.1e-12  Score=108.00  Aligned_cols=137  Identities=21%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHH-HhcCCeEEEEeccCcccccc-c-cceEeC---
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAV-ATIGPVSIAIDASHQSFQFY-S-EGVYYE---  116 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i-~~~GPv~v~~~~~~~~f~~Y-~-~Giy~~---  116 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++. ...+.-.+.-......|.+. + .||...   
T Consensus        12 ~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y   91 (218)
T 3ovx_A           12 GCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASY   91 (218)
T ss_dssp             TCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTS
T ss_pred             CCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHHhCCcCccccc
Confidence            567888889999988765441 11111     122356888888875 21111000000001223333 1 355432   


Q ss_pred             ------CCCCCCCCCeeEEEeeeeecCCCC----ceeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEE
Q psy403          117 ------PECNSTQLDHAVLVVGYGTDENGN----DYWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVV  184 (233)
Q Consensus       117 ------~~c~~~~~~Hav~ivGyg~~~~~~----~ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vV  184 (233)
                            ..|..........|.+|.......    ...|.++++...-.+..  .|+.|++||+..+.| ...++|||+||
T Consensus        92 PY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~-~~~~~HaV~iV  170 (218)
T 3ovx_A           92 PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVV  170 (218)
T ss_dssp             CCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTC-CSCCCEEEEEE
T ss_pred             CccCCCCcccCCCccceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCC-CcccCcEEEEE
Confidence                  345443444566777887643211    23445556555444554  488999999998888 56789999999


Q ss_pred             Ee
Q psy403          185 GY  186 (233)
Q Consensus       185 Gy  186 (233)
                      ||
T Consensus       171 Gy  172 (218)
T 3ovx_A          171 GY  172 (218)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.15  E-value=8e-11  Score=104.00  Aligned_cols=79  Identities=29%  Similarity=0.481  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCCeEEEEeccCccccccccceEeCCC-------------------------------------------C-
Q psy403           84 KLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE-------------------------------------------C-  119 (233)
Q Consensus        84 ~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~-------------------------------------------c-  119 (233)
                      .+.++|...-||--+.+++...|.  +.||...+.                                           . 
T Consensus       233 ~~~~~Lk~G~~V~fg~DV~~~~f~--~~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d  310 (383)
T 3pw3_A          233 VFDNAINTGYTIAWGSDVSESGFT--RDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYD  310 (383)
T ss_dssp             HHHHHHHTTCCEEEEEECCSTTBC--TTSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEcccCccccC--CCceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhh
Confidence            344556788899999999654555  778873221                                           0 


Q ss_pred             -CCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccceeccC
Q psy403          120 -NSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN  164 (233)
Q Consensus       120 -~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~~r~  164 (233)
                       .....+|||+||||+.++++++||+||||||+.||++||+++.+.
T Consensus       311 ~~~t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          311 NYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             TTSSCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEHH
T ss_pred             hccCcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecHH
Confidence             012357999999999867889999999999999999999887544

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.10  E-value=3.2e-12  Score=105.41  Aligned_cols=136  Identities=16%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             ccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEeC-----
Q psy403           50 QVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYYE-----  116 (233)
Q Consensus        50 ~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~~-----  116 (233)
                      .++++++|+.|..++++... .+...     ..+...++++|.++....+.-.+.-.-....|.+..  .||...     
T Consensus        13 ~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY   92 (220)
T 8pch_A           13 FVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY   92 (220)
T ss_dssp             CSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCC
T ss_pred             cCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHHcCCcCcccccCc
Confidence            57788889999988765441 11111     122356888888886432111100000011232221  255432     


Q ss_pred             ----CCCCCCCCCeeEEEeeeeecCCCC----ceeEEeecCCccccccc-cceeccCCccccCCCccc--cccceeEEEE
Q psy403          117 ----PECNSTQLDHAVLVVGYGTDENGN----DYWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNST--QLDHAVLVVG  185 (233)
Q Consensus       117 ----~~c~~~~~~Hav~ivGyg~~~~~~----~ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~--~~~haV~vVG  185 (233)
                          ..|..........+.+|.......    ...|.++++...-.+.. .|+.|++||+..+.|...  .++|||+|||
T Consensus        93 ~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~~~~~~HaV~iVG  172 (220)
T 8pch_A           93 KGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVG  172 (220)
T ss_dssp             CSSCCCCCCCGGGEEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCCSTTTCCEEEEEEE
T ss_pred             cCCCCCCCCCCCcceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCCCCCcCCcEEEEEE
Confidence                345433344556677876643221    23344555544333333 588899999998888765  7899999986

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.10  E-value=7.6e-12  Score=108.86  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=76.7

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...|||.          .+.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+.  
T Consensus       106 ~lP~~~DwR~----------~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~~~~gC~GG~--  173 (322)
T 1pci_A          106 NLPENVDWRK----------KGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGY--  173 (322)
T ss_dssp             CSCSCEETTT----------TTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCTTSCGGGCBC--
T ss_pred             CCCCeEeccc----------CCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcCCCCCCCCCC--
Confidence            4777666663          3567888999999988865441 11111     1223467888877642000000000  


Q ss_pred             cCccccccc-cceEe---------CCCCCCCC-CCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCC
Q psy403          102 SHQSFQFYS-EGVYY---------EPECNSTQ-LDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNR  165 (233)
Q Consensus       102 ~~~~f~~Y~-~Giy~---------~~~c~~~~-~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~g  165 (233)
                      ....|.+.. .||..         ...|.... ....+.|.||.....+..   ..+|.+++.+.-.+..  .|+.|++|
T Consensus       174 ~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~GPV~v~i~~~~~~f~~Y~~G  253 (322)
T 1pci_A          174 PPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGG  253 (322)
T ss_dssp             HHHHHHHHHHHCBCBTTTSCCCSSCCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHHSCEEEEECTTCHHHHTEEEE
T ss_pred             HHHHHHHHHHhCCCchhhCCCCCCCCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHHCCEEEEEecccccccccCCe
Confidence            011222111 12221         24575432 234566778876432221   1134455544444443  48899999


Q ss_pred             ccccCCCccccccceeEEEE
Q psy403          166 VYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       166 i~~~~~c~~~~~~haV~vVG  185 (233)
                      |+.. .|+. .+||||+|||
T Consensus       254 vy~~-~c~~-~~~HaV~iVG  271 (322)
T 1pci_A          254 IFEG-PCGT-KVDGAVTAVG  271 (322)
T ss_dssp             EECC-SCCS-CCCEEEEEEE
T ss_pred             EeCC-CCCC-CCCEEEEEEE
Confidence            9964 5876 4799999976

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.08  E-value=1.8e-11  Score=101.04  Aligned_cols=134  Identities=23%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEe-----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYY-----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~-----  115 (233)
                      +.++++++|+.|..++++... .+...     ..+...++++|.++........-+. . ...|.+..  .||..     
T Consensus        13 ~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~y~~~~~Gi~~e~~yP   90 (221)
T 1cqd_A           13 GAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGW-M-NPAFQFIVNNGGINSEETYP   90 (221)
T ss_dssp             TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHTSBCBTTTSC
T ss_pred             CCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCC-H-HHHHHHHHHhCCccccccCC
Confidence            567788889999988765432 11111     1123468888888753211111010 0 12233221  24432     


Q ss_pred             ----CCCCCCCCCCeeEEEeeeeecCCCCce---eEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEEe
Q psy403          116 ----EPECNSTQLDHAVLVVGYGTDENGNDY---WLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       116 ----~~~c~~~~~~Hav~ivGyg~~~~~~~y---wivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                          ...|......+.+.|.+|.........   .+|.+++...--+..  .|+.|++||+.. .|+. .++|||+||||
T Consensus        91 Y~~~~~~C~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGy  168 (221)
T 1cqd_A           91 YRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNI-SANHALTVVGY  168 (221)
T ss_dssp             CCSSCCCCCSSSCCCSBCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEE
T ss_pred             ccCCCCCcCCCCCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEeccCcccccccCccccC-CCCC-cCCeEEEEEEE
Confidence                234654333455667777653221111   123454433333333  588899999875 6875 58999999998

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.07  E-value=1.4e-12  Score=107.86  Aligned_cols=145  Identities=22%  Similarity=0.253  Sum_probs=76.5

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...+||.          ++.++++++|+.|..++++... .+...     ..+...++++|.++....|--.+.-.-
T Consensus         6 ~lP~~~Dwr~----------~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~   75 (224)
T 3f75_A            6 ELPAGVDWRS----------RGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGE   75 (224)
T ss_dssp             GSCSCEEHHH----------HTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC
T ss_pred             CCCCceeccc----------CCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCC
Confidence            3566556663          2567788889999988765441 11111     112356888888875431110000000


Q ss_pred             cCccccccc--cceEeC---------CCCCCCCCCeeEEEeeeeecCCCC----ceeEEeecCCccccccc--cceeccC
Q psy403          102 SHQSFQFYS--EGVYYE---------PECNSTQLDHAVLVVGYGTDENGN----DYWLVKNSWNTTWGDEG--YIKMARN  164 (233)
Q Consensus       102 ~~~~f~~Y~--~Giy~~---------~~c~~~~~~Hav~ivGyg~~~~~~----~ywivkNSwg~~wg~~G--~~~~~r~  164 (233)
                      ....|.+..  .||...         ..|........+.|.+|.......    ... |.+++...-.+..  .|+.|++
T Consensus        76 ~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~~~~~~~~~l~~~-l~~gPV~v~i~~~~~~f~~y~~  154 (224)
T 3f75_A           76 MNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAA-LAKSPVSIAIEADQMPFQFYHE  154 (224)
T ss_dssp             HHHHHHHHHHHTCBCBTTTSCCCSSCCCCCGGGSCCCBCCSEEEECCSSCHHHHHHH-HHHSCEEEEECCCSHHHHTEEE
T ss_pred             HHHHHHHHHHhCCccccccCCCcCCCCCCCcCCCCceEEeccEEEeCCChHHHHHHH-HcCCCEEEEEeccchhhhcCcc
Confidence            012233322  344432         235433333344566776532211    122 2355544444443  5889999


Q ss_pred             CccccCCCccccccceeEEEE
Q psy403          165 RVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       165 gi~~~~~c~~~~~~haV~vVG  185 (233)
                      ||+. +.|+ ..++|||+|||
T Consensus       155 Giy~-~~~~-~~~~Hav~iVG  173 (224)
T 3f75_A          155 GVFD-ASCG-TDLDHGVLLVG  173 (224)
T ss_dssp             EEEC-CCCC-CCCCEEEEEEE
T ss_pred             ceEC-CCCC-CccCeEEEEEE
Confidence            9997 6785 67899999976

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=98.97  E-value=1.1e-10  Score=95.72  Aligned_cols=133  Identities=19%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCcccccc-ccceEe------
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFY-SEGVYY------  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y-~~Giy~------  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. . ...|.+. +.||..      
T Consensus        11 ~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~yi~~~Gi~~e~~yPY   88 (212)
T 2cio_A           11 GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGY-P-WSALQLVAQYGIHYRNTYPY   88 (212)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHTCBCBTTTSCC
T ss_pred             CCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCC-H-HHHHHHHHHhCcCcccccCC
Confidence            567788889999988765432 11111     1223457888877742110000000 0 1112211 122221      


Q ss_pred             ---CCCCCCCC-CCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEE
Q psy403          116 ---EPECNSTQ-LDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       116 ---~~~c~~~~-~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                         ...|.... ....+.|.+|........   ..+|.+++...-.+..  .|+.|++||+.. .|+. .++|||+|||
T Consensus        89 ~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~-~~~~-~~~HaV~iVG  165 (212)
T 2cio_A           89 EGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGN-KVDHAVAAVG  165 (212)
T ss_dssp             CSSCCCCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC-CCCS-CCCEEEEEEE
T ss_pred             cCCCCCcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHhCCEEEEEeccCcchhhcCCceecC-CCCC-CCCEEEEEEE
Confidence               23565433 234566777765322111   1124555444333332  588899999865 5875 5799999975

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=98.91  E-value=2.7e-10  Score=93.34  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc-cceEe------
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS-EGVYY------  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~-~Giy~------  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...+|++|.++.....-..-+. . ...|.+.. .||..      
T Consensus        11 ~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~~~~~~Gi~~e~~yPY   88 (213)
T 3ioq_A           11 GAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGF-P-LYALQYVANSGIHLRQYYPY   88 (213)
T ss_dssp             TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHCEEBGGGSCC
T ss_pred             CCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCCCC-H-HHHHHHHHHcCCCchhccCc
Confidence            567888889999988765431 11111     1223457888877653111100000 0 11222211 13332      


Q ss_pred             ---CCCCCCC-CCCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEE
Q psy403          116 ---EPECNST-QLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       116 ---~~~c~~~-~~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                         ...|... .....+.|.+|.......+   ..++++++...-.+..  .|+.|++||+.. .|+ ..++|||+|||
T Consensus        89 ~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~-~~~-~~~~HaV~iVG  165 (213)
T 3ioq_A           89 EGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAG-PCG-TSIDHAVAAVG  165 (213)
T ss_dssp             CSSCCCCCGGGCCSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC-SCC-SCCCEEEEEEE
T ss_pred             CCCCCCCCCCccCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcC-CCC-CccCceEEEEe
Confidence               2456542 2345667778876432222   2356675554444443  588999999976 564 56799999986

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=98.84  E-value=2e-09  Score=90.18  Aligned_cols=134  Identities=19%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHH-hcCCeEEEEeccCccccccc--cceEe----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVA-TIGPVSIAIDASHQSFQFYS--EGVYY----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~-~~GPv~v~~~~~~~~f~~Y~--~Giy~----  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++.. ..| ..-+. . ...|.+..  .||..    
T Consensus        12 g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~g-C~GG~-~-~~a~~y~~~~~Gi~~e~~y   88 (246)
T 2b1m_A           12 GVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEG-CYNGW-H-YQSFEWVVKHGGIASEADY   88 (246)
T ss_dssp             TCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBT-TTBCC-H-HHHHHHHHHTTCBCBTTTS
T ss_pred             CCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCC-CCCCC-H-HHHHHHHHHhCCcCccccc
Confidence            567788889999988765442 11111     1223568888888742 111 00000 0 11222221  14433    


Q ss_pred             -----CCCCCCCCCCeeEEEeee---eecCCCC----ceeEEe---ecCCccccccccceeccCCccccCCCcccc-ccc
Q psy403          116 -----EPECNSTQLDHAVLVVGY---GTDENGN----DYWLVK---NSWNTTWGDEGYIKMARNRVYYEPECNSTQ-LDH  179 (233)
Q Consensus       116 -----~~~c~~~~~~Hav~ivGy---g~~~~~~----~ywivk---NSwg~~wg~~G~~~~~r~gi~~~~~c~~~~-~~h  179 (233)
                           ...|........+.|.+|   .......    ...|.+   +++...-.+.-.|+.|++||+..+.|+... ++|
T Consensus        89 PY~~~~~~C~~~~~~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~~~c~~~~~~~H  168 (246)
T 2b1m_A           89 PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPYGINH  168 (246)
T ss_dssp             CCCSSCCCCCGGGCCCCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECCTTCCSSCCCCE
T ss_pred             cccCCCCcCcCCCCCCceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecCCCCCCCCcCce
Confidence                 234653333345567777   3322111    122333   365554333345888999999887898765 899


Q ss_pred             eeEEEE
Q psy403          180 AVLVVG  185 (233)
Q Consensus       180 aV~vVG  185 (233)
                      ||+|||
T Consensus       169 aV~iVG  174 (246)
T 2b1m_A          169 FVLIVG  174 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999976

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=98.74  E-value=4.7e-09  Score=86.01  Aligned_cols=135  Identities=18%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEe-----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYY-----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~-----  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...+|++|.++........-+. . ...|.+..  +||..     
T Consensus        11 ~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~~i~~~~Gi~~e~~yP   88 (214)
T 1m6d_A           11 GAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGL-P-SNAYSAIKNLGGLETEDDYS   88 (214)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCC-H-HHHHHHHHHHTCBCBTTTSC
T ss_pred             CCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCC-H-HHHHHHHHHhcCcccccCcC
Confidence            567888889999988765431 11111     1223568888888742110000000 0 11232221  24432     


Q ss_pred             ----CCCCCCCCCCeeEEEeeeeecCC---CCceeEEeecCCccccccccceeccCCcccc--CCCccccccceeEEEE
Q psy403          116 ----EPECNSTQLDHAVLVVGYGTDEN---GNDYWLVKNSWNTTWGDEGYIKMARNRVYYE--PECNSTQLDHAVLVVG  185 (233)
Q Consensus       116 ----~~~c~~~~~~Hav~ivGyg~~~~---~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~--~~c~~~~~~haV~vVG  185 (233)
                          ...|........+.|.++-....   .....|+++++...-.+...|++|++||+..  ..|+...++|||+|||
T Consensus        89 Y~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVG  167 (214)
T 1m6d_A           89 YQGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVG  167 (214)
T ss_dssp             CCSSCCCCCCCGGGCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEE
T ss_pred             cCCCCCcCCCCcccceEEecCEEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEE
Confidence                23454322222334445543211   1223445566654433333478899999875  3488878999999987

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=98.72  E-value=7.5e-09  Score=87.42  Aligned_cols=143  Identities=21%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             CchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHh-cCCeEEEEec
Q psy403           29 LPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVAT-IGPVSIAIDA  101 (233)
Q Consensus        29 ~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~-~GPv~v~~~~  101 (233)
                      +|...|||.          ++.++++++|+.|..++++... .+.+.     ..+...++++|.++... .....-+.  
T Consensus         4 lP~~~DwR~----------~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~--   71 (262)
T 2fo5_A            4 LPPSVDWRQ----------KGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGL--   71 (262)
T ss_dssp             CCSCEETTT----------TTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBC--
T ss_pred             CCCcccCCC----------CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCC--
Confidence            565556653          3567888889999988865442 11111     12235688888888531 00000000  


Q ss_pred             cCccccccc--cceEeC---------CCCCCCC---CCe-eEEEeeeeecCCCCc---eeEEeecCCccccccc--ccee
Q psy403          102 SHQSFQFYS--EGVYYE---------PECNSTQ---LDH-AVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKM  161 (233)
Q Consensus       102 ~~~~f~~Y~--~Giy~~---------~~c~~~~---~~H-av~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~  161 (233)
                      ....|.+..  .||...         ..|....   ..+ .+.|.+|........   ..+|.+++...-.+..  .|+.
T Consensus        72 ~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~GPV~v~i~~~~~~f~~  151 (262)
T 2fo5_A           72 MDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMF  151 (262)
T ss_dssp             HHHHHHHHHHTTCEEBTTTSCCCSSCCCCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHT
T ss_pred             HHHHHHHHHHcCCcCchhcCCCcCccCccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHhCCEEEEEecChHHHhc
Confidence            012333322  255542         2454222   234 677888875332211   1234554433333332  5888


Q ss_pred             ccCCccccCCCccccccceeEEEE
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |++||+.. .|+. .++|||+|||
T Consensus       152 Y~sGVy~~-~c~~-~~~HaV~IVG  173 (262)
T 2fo5_A          152 YSEGVFTG-ECGT-ELDHGVAVVG  173 (262)
T ss_dssp             CCSSEECC-CCCC-CCCEEEEEEE
T ss_pred             cCCceECC-CCCC-cCCEEEEEEE
Confidence            99999864 6875 4799999975

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=98.72  E-value=8.1e-09  Score=85.49  Aligned_cols=133  Identities=21%  Similarity=0.255  Sum_probs=68.8

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHh-cCCeEEEEeccCccccccc--cceEeC---
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVAT-IGPVSIAIDASHQSFQFYS--EGVYYE---  116 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~-~GPv~v~~~~~~~~f~~Y~--~Giy~~---  116 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++... .....-+. . ...|.+..  .||...   
T Consensus        12 ~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~-~-~~a~~y~~~~~Gi~~e~~y   89 (229)
T 1s4v_A           12 GAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGL-M-DYAFEFIKQRGGITTEANY   89 (229)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBC-H-HHHHHHHHHHTCBCBTTTS
T ss_pred             CCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCC-H-HHHHHHHHHhCCccccccC
Confidence            567788889999988765432 11111     11234688888887521 00100000 0 12233221  244432   


Q ss_pred             ------CCCCCC-CCCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEE
Q psy403          117 ------PECNST-QLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVV  184 (233)
Q Consensus       117 ------~~c~~~-~~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vV  184 (233)
                            ..|... .....+.|.+|........   ..+|.+++...-.+..  .|+.|++||+.. .|+. .++|||+||
T Consensus        90 PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~-~c~~-~~~HaV~iV  167 (229)
T 1s4v_A           90 PYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG-SCGT-ELDHGVAIV  167 (229)
T ss_dssp             CCCSSCCCCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEE
T ss_pred             CccCCCCCCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhcCCEEEEEEeCcHHHhhCCCcEECC-CCCC-CCCeEEEEE
Confidence                  245422 1123456777765322111   1134455444333442  488899999864 5875 479999997


Q ss_pred             E
Q psy403          185 G  185 (233)
Q Consensus       185 G  185 (233)
                      |
T Consensus       168 G  168 (229)
T 1s4v_A          168 G  168 (229)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=98.66  E-value=1.6e-08  Score=91.24  Aligned_cols=136  Identities=10%  Similarity=-0.019  Sum_probs=69.3

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceEEE-------cCCCcHHHHHHHHHhcCCeEEEE
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGYVD-------IPEGDEYKLKAAVATIGPVSIAI   99 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~~~-------~~~~~~~~i~~~i~~~GPv~v~~   99 (233)
                      .+|...|||.+.       ..++++++++|+.|..++++... .+.+...       ....++++|.++.....-..-++
T Consensus       206 ~lP~s~DwR~~~-------g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~GG~  278 (441)
T 3pdf_A          206 FLPTSWDWRNVH-------GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGF  278 (441)
T ss_dssp             CCCSCEETTCBT-------TBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBCCC
T ss_pred             cCCCCEECCcCC-------CCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccCCCCCCCCc
Confidence            477766676421       12468889999999998876542 2221111       01368888888743111100010


Q ss_pred             eccCcc-cccc-ccceEe---------CCCCCCCCCCeeEEEeeeeecC-----CC---CceeEEeecCCccccccc-cc
Q psy403          100 DASHQS-FQFY-SEGVYY---------EPECNSTQLDHAVLVVGYGTDE-----NG---NDYWLVKNSWNTTWGDEG-YI  159 (233)
Q Consensus       100 ~~~~~~-f~~Y-~~Giy~---------~~~c~~~~~~Hav~ivGyg~~~-----~~---~~ywivkNSwg~~wg~~G-~~  159 (233)
                      .  ... |.+. ..||..         ...|..........+.+|....     ..   ....|+++++.+.-.+.. .|
T Consensus       279 ~--~~aa~~yi~~~Gi~tE~~yPY~~~~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F  356 (441)
T 3pdf_A          279 P--YLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDF  356 (441)
T ss_dssp             H--HHHTTHHHHHTCBCBGGGSCCCSSCCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGG
T ss_pred             h--hHHHHHHHHhcCCCcHHHeeecccCCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccc
Confidence            0  011 1111 123332         2457543333344566665431     11   123456777766555543 58


Q ss_pred             eeccCCccccCCC
Q psy403          160 KMARNRVYYEPEC  172 (233)
Q Consensus       160 ~~~r~gi~~~~~c  172 (233)
                      +.|++||+....|
T Consensus       357 ~~Y~sGVy~~~~~  369 (441)
T 3pdf_A          357 LHYKKGIYHHTGL  369 (441)
T ss_dssp             GGCCSSEECCC--
T ss_pred             cccCCceEecCCC
Confidence            8999999976544

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=98.66  E-value=8e-09  Score=86.17  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=78.2

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...+||.          .+.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. .
T Consensus        17 ~lP~~~DwR~----------~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~-~   85 (241)
T 2oul_A           17 FDHAAYDWRL----------HSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGL-I   85 (241)
T ss_dssp             CCSSCEEGGG----------TTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBC-H
T ss_pred             cCCCccccCc----------CCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCC-H
Confidence            3565555553          2567788889999988865441 11111     1223568888888753111111010 0


Q ss_pred             cCccccccc--cceEeC---------CC-CCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc--ccccc-cceeccCCc
Q psy403          102 SHQSFQFYS--EGVYYE---------PE-CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT--WGDEG-YIKMARNRV  166 (233)
Q Consensus       102 ~~~~f~~Y~--~Giy~~---------~~-c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~--wg~~G-~~~~~r~gi  166 (233)
                       ...|.+..  .||...         .. |........+.|.+|.........-|.+.- |..  --+.. .|+.|++||
T Consensus        86 -~~a~~yi~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l-GPV~v~i~~~~~f~~Y~~Gi  163 (241)
T 2oul_A           86 -NNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFL-GPISISVAVSDDFAFYKEGI  163 (241)
T ss_dssp             -HHHHHHHHHTTSBCBTTSSCCCTTSCCCCCTTSSSCCBCCSEEEECCTTCHHHHHHHT-CCEEEEECBCHHHHTCCSSB
T ss_pred             -HHHHHHHHHhCCcCccccCCCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh-CCEEEEEecCcchhhcCCcE
Confidence             12233322  355432         23 654333445567777653322211111111 432  22222 477899999


Q ss_pred             cccCCCccccccceeEEEEeecC
Q psy403          167 YYEPECNSTQLDHAVLVVGYGTD  189 (233)
Q Consensus       167 ~~~~~c~~~~~~haV~vVGyg~~  189 (233)
                      +.. .|+.. ++|||+|||||++
T Consensus       164 y~~-~c~~~-~~HaV~iVGyg~~  184 (241)
T 2oul_A          164 FDG-ECGDQ-LNHAVMLVGFGMK  184 (241)
T ss_dssp             CCS-CBCSS-CCEEEEEEEEEEE
T ss_pred             EcC-cCCCC-CCEEEEEEEeccc
Confidence            876 78876 8999999999975

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=98.65  E-value=1.3e-08  Score=86.55  Aligned_cols=41  Identities=20%  Similarity=0.108  Sum_probs=27.9

Q ss_pred             EEeecCCccccccc-cceeccCCccccCCCccccccceeEEEE
Q psy403          144 LVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       144 ivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |+++++...-.+.. .|+.|++||+....|. ..+||||+|||
T Consensus       180 i~~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~-~~~~HaV~iVG  221 (277)
T 1deu_A          180 IYANGPISCGIMATERLANYTGGIYAEYQDT-TYINHVVSVAG  221 (277)
T ss_dssp             HHHHCCEEEEECCCHHHHTCCSSEECBCCSC-CCCCEEEEEEE
T ss_pred             HHHcCCEEEEEecccccccCcCcEECCCCCC-CcCCeEEEEEE
Confidence            44555544433332 4788999999765553 57899999976

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=98.65  E-value=1.4e-08  Score=83.33  Aligned_cols=133  Identities=15%  Similarity=0.196  Sum_probs=70.1

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEe-----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYY-----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~-----  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. . ...|.+..  .||..     
T Consensus        11 ~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~~~~~~~Gi~~e~~yP   88 (215)
T 1iwd_A           11 GAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGW-M-NNAFQYIITNGGIDTQQNYP   88 (215)
T ss_dssp             TCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHTCBCBTTTSC
T ss_pred             CCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCCCC-H-HHHHHHHHHhCCcccccccC
Confidence            567788889999988765431 11111     1223468888887743111110000 0 12233221  24432     


Q ss_pred             ----CCCCCCCCCCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEEe
Q psy403          116 ----EPECNSTQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       116 ----~~~c~~~~~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                          ...|.... .+.+.|.+|.......+   ..+|.+++...-.+..  .|+.|++||+.. .|+. .++|||+||||
T Consensus        89 Y~~~~~~C~~~~-~~~~~i~~~~~v~~~~~~~ik~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~-~~~HaV~iVGy  165 (215)
T 1iwd_A           89 YSAVQGSCKPYR-LRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTG-PCGT-AQNHGVVIVGY  165 (215)
T ss_dssp             CCSSCCCCCTTC-CCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC-CCCC-CCCEEEEEEEE
T ss_pred             ccCCCCCCCCCC-CceEEeCcEEEeCCCcHHHHHHHHHhCCEEEEEecCCcchhhcCCceECC-CCCC-cCCEEEEEEEE
Confidence                23464322 35566777765322211   1124454444333332  488899999864 5874 67999999998

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=98.65  E-value=8.5e-09  Score=86.11  Aligned_cols=147  Identities=18%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             CCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEec
Q psy403           28 FLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDA  101 (233)
Q Consensus        28 ~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~  101 (233)
                      .+|...+||.          .+.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. .
T Consensus        19 ~lP~~~DwR~----------~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~-~   87 (243)
T 3bwk_A           19 LDRIAYDWRL----------HGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGY-I   87 (243)
T ss_dssp             CCCSCEEGGG----------TTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCC-H
T ss_pred             cCCCceecCc----------CCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCC-H
Confidence            3666556653          2567888889999988865441 11111     1123468888887753111100000 0


Q ss_pred             cCccccccc--cceEeC---------CC-CCCCCCCeeEEEeeeeecCCCCceeEEeecCCcc--ccccc-cceeccCCc
Q psy403          102 SHQSFQFYS--EGVYYE---------PE-CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTT--WGDEG-YIKMARNRV  166 (233)
Q Consensus       102 ~~~~f~~Y~--~Giy~~---------~~-c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~--wg~~G-~~~~~r~gi  166 (233)
                       ...|.+..  .||...         .. |........+.|.+|.........-|.+.- |..  -.+.. -|+.|++||
T Consensus        88 -~~a~~y~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~ik~~l-GPV~v~i~~~~~f~~Y~~Gi  165 (243)
T 3bwk_A           88 -TNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRYL-GPISISIAASDDFAFYRGGF  165 (243)
T ss_dssp             -HHHHHHHHHTTSBCBTTTSCCCTTSCCCCCGGGCSSCBCCCEEEECCTTCHHHHHHHT-CCEEEEECCCHHHHTCCSSS
T ss_pred             -HHHHHHHHHhCCcccccccCCcCCCCCcCCCCCCccceeeeeEEEeCCCCHHHHHHhh-CCEEEEEecChhHHhcCCce
Confidence             12233221  344432         23 653322344566777543322211121111 332  22222 477899999


Q ss_pred             cccCCCccccccceeEEEEeecC
Q psy403          167 YYEPECNSTQLDHAVLVVGYGTD  189 (233)
Q Consensus       167 ~~~~~c~~~~~~haV~vVGyg~~  189 (233)
                      +.. .|+.. ++|||+|||||++
T Consensus       166 y~~-~c~~~-~~HaV~iVGyg~~  186 (243)
T 3bwk_A          166 YDG-ECGAA-PNHAVILVGYGMK  186 (243)
T ss_dssp             CCC-CCCSS-CCEEEEEEEEEEE
T ss_pred             ecC-CCCCc-CCeEEEEEEecCc
Confidence            876 78876 8999999999975

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=98.64  E-value=1.3e-08  Score=86.01  Aligned_cols=41  Identities=17%  Similarity=0.110  Sum_probs=26.8

Q ss_pred             EEeecCCcccccc-ccceeccCCccccCCCccccccceeEEEE
Q psy403          144 LVKNSWNTTWGDE-GYIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       144 ivkNSwg~~wg~~-G~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |+++++...-.+. ..|+.|++||+... |+....+|||+|||
T Consensus       170 i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~-~~~~~~~HaV~iVG  211 (266)
T 3cbj_A          170 IYKNGPVEGAFSVYSDFLLYKSGVYQHV-TGEMMGGHAIRILG  211 (266)
T ss_dssp             HHHHCCEEEEEEEEGGGGGCCSSEECCC-SSCEEEEEEEEEEE
T ss_pred             HHhcCCEEEEEEeccchhhcCCeEEecC-CCCccCCeEEEEEE
Confidence            3444554433332 24788999998654 65556799999976

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=98.63  E-value=1.7e-08  Score=82.96  Aligned_cols=134  Identities=22%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc-cceEe------
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS-EGVYY------  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~-~Giy~------  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. . ...|.+.. .||..      
T Consensus        11 ~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~~~~~~Gi~~e~~yPY   88 (218)
T 1yal_A           11 GAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGY-Q-TTSLQYVANNGVHTSKVYPY   88 (218)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHCBCBTTTSCC
T ss_pred             CCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcCCCCCCCCCC-H-HHHHHHHHHcCCCccccccc
Confidence            567788889999988765431 11111     1123457888877741111100000 0 11222211 12221      


Q ss_pred             ---CCCCCCCC-CCeeEEEeeeeecCCCCc---eeEEeecCCcccccc--ccceeccCCccccCCCccccccceeEEEEe
Q psy403          116 ---EPECNSTQ-LDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDE--GYIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       116 ---~~~c~~~~-~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~--G~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                         ...|.... ..+.+.|.+|........   ..+|.+++...-.+.  -.|+.|++||+.. .|+. .++|||+||||
T Consensus        89 ~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iVGy  166 (218)
T 1yal_A           89 QAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDG-PCGT-KLDHAVTAVGY  166 (218)
T ss_dssp             CSSCCCCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC-SCCS-CCCEEEEEEEE
T ss_pred             cCCCCCcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHhCCEEEEEeccchhccccCCceECC-CCCC-CCCEEEEEEEe
Confidence               23565332 134566777765322111   112344443333333  2588899999864 6876 47999999998

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=98.63  E-value=1.7e-08  Score=82.77  Aligned_cols=133  Identities=19%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHH-hcCCeEEEEeccCccccccc-cceEe-----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVA-TIGPVSIAIDASHQSFQFYS-EGVYY-----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~-~~GPv~v~~~~~~~~f~~Y~-~Giy~-----  115 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++.. ..| ..-+. . ...|.+.. .||..     
T Consensus        11 ~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~g-C~GG~-~-~~a~~yi~~~Gi~~e~~yP   87 (216)
T 1ppo_A           11 GAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHG-CKGGY-P-PYALEYVAKNGIHLRSKYP   87 (216)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCT-TBCCC-H-HHHHHHHHHHCBCBTTTSC
T ss_pred             CCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCCCCC-CCCCC-H-HHHHHHHHHhCcCccccCC
Confidence            567788889999888765431 11111     1123457888777642 111 00000 0 11122111 12221     


Q ss_pred             ----CCCCCCCCC-CeeEEEeeeeecCCCCce---eEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEE
Q psy403          116 ----EPECNSTQL-DHAVLVVGYGTDENGNDY---WLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       116 ----~~~c~~~~~-~Hav~ivGyg~~~~~~~y---wivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                          ...|..... .+.+.|.+|.........   .+|.+++...-.+..  .|+.|++||+.. .|+.. ++|||+|||
T Consensus        88 Y~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~~~~~~~~f~~Y~~Giy~~-~~~~~-~~HaV~iVG  165 (216)
T 1ppo_A           88 YKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEG-PCGTK-VDHAVTAVG  165 (216)
T ss_dssp             CCSSCCCCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECC-SCCSC-CCEEEEEEE
T ss_pred             ccCCCCCcCCCCCCCceEEeccEEEECCCCHHHHHHHHHhCCEEEEEecCChhhhhcCCceECC-CCCCC-CCEEEEEEE
Confidence                235653321 345667777653221111   123454443333332  488899999864 68764 799999999


Q ss_pred             e
Q psy403          186 Y  186 (233)
Q Consensus       186 y  186 (233)
                      |
T Consensus       166 y  166 (216)
T 1ppo_A          166 Y  166 (216)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=98.63  E-value=1.2e-08  Score=88.51  Aligned_cols=42  Identities=17%  Similarity=0.074  Sum_probs=29.3

Q ss_pred             eEEeecCCcccccc-ccceeccCCccccCCCccccccceeEEEE
Q psy403          143 WLVKNSWNTTWGDE-GYIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       143 wivkNSwg~~wg~~-G~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      .|+++++.+.-.+. ..|+.|++||+... |+....+|||+|||
T Consensus       226 ~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~-~~~~~~~HaV~iVG  268 (317)
T 3pbh_A          226 EIYKNGPVEGAFSVYSDFLLYKSGVYQHV-TGEMMGGHAIRILG  268 (317)
T ss_dssp             HHHHHCCEEEEEEEEGGGGGEEEEEECCC-SCCEEEEEEEEEEE
T ss_pred             HHHHCCCEEEEEEecccccCCCCcEEccC-CCCCCCCEEEEEEE
Confidence            34556665544443 25889999998654 66667799999986

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=98.59  E-value=1.7e-08  Score=85.24  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             EEeecCCccccccccceecc-CCccccCCCccccccceeEEEEee
Q psy403          144 LVKNSWNTTWGDEGYIKMAR-NRVYYEPECNSTQLDHAVLVVGYG  187 (233)
Q Consensus       144 ivkNSwg~~wg~~G~~~~~r-~gi~~~~~c~~~~~~haV~vVGyg  187 (233)
                      |+++++.+..-+..-|..|+ .|++....|+...+||||+|||||
T Consensus       164 i~~~GPV~v~i~~~~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG  208 (265)
T 2wbf_X          164 VMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYG  208 (265)
T ss_dssp             HHHHSCEEEEECGGGGCSGGGGSSSEECCCCCSCCCEEEEEEEEE
T ss_pred             HHhcCCEEEEEEcccccccccCCcEEcCCCCCCcCCEEEEEEEEe
Confidence            34455544333322233443 444333468877899999999999

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=98.59  E-value=1.6e-08  Score=87.92  Aligned_cols=43  Identities=21%  Similarity=-0.055  Sum_probs=30.0

Q ss_pred             eeEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEE
Q psy403          142 YWLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       142 ywivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      ..|+++++.+.-.+.. -|+.|++||+... |+...+||||+|||
T Consensus       223 ~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~-~~~~~~~HaV~iVG  266 (325)
T 3hhi_A          223 RELFFRGPFEVAFDVYEDFIAYNSGVYHHV-SGQYLGGHAVRLVG  266 (325)
T ss_dssp             HHHHHHCCEEEEEEEEHHHHTCCSSEECCC-SCCEEEEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEeccccccccCceecCC-CCCCCCCEEEEEEE
Confidence            4456676665544442 4889999999654 44556799999986

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=98.47  E-value=7.1e-08  Score=80.96  Aligned_cols=42  Identities=14%  Similarity=0.030  Sum_probs=27.5

Q ss_pred             eEEeecCCcccccc-ccceeccCCccccCCCccccccceeEEEE
Q psy403          143 WLVKNSWNTTWGDE-GYIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       143 wivkNSwg~~wg~~-G~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      .|+++++...-.+. ..|+.|++||+... |.....+|||+|||
T Consensus       165 ~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~-~~~~~~~Hav~iVG  207 (254)
T 3qsd_A          165 EIMKYGPVEAGFTVYEDFLNYKSGIYKHI-TGETLGGHAIRIIG  207 (254)
T ss_dssp             HHHHHCCEEEEEEEEGGGGGCCSSEECCC-SSCEEEEEEEEEEE
T ss_pred             HHHHcCCEEEEEEeccccccccCCeeccC-CCCCCCCeEEEEEE
Confidence            34455554433332 24788999998754 44556799999986

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=98.44  E-value=1.1e-07  Score=77.40  Aligned_cols=131  Identities=18%  Similarity=0.165  Sum_probs=68.8

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEeccCccccccc--cceEeC----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYS--EGVYYE----  116 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~--~Giy~~----  116 (233)
                      +.++++++|+.|..++++... .+.+.     ..+...++++|.++........-+. . ...|.+..  .||...    
T Consensus        11 ~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~-~~a~~y~~~~~Gi~~e~~yP   88 (208)
T 1o0e_A           11 GAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGA-F-VFAYQYIINNGGIDTQANYP   88 (208)
T ss_dssp             TCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-H-HHHHHHHHHHTCBCBTTTSC
T ss_pred             CCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCC-H-HHHHHHHHHhCCcCcccccC
Confidence            567788889999988765431 11111     1223568888888752111110010 0 12233221  244432    


Q ss_pred             -----CCCCCCCCCeeEEEeeeeecCCCCc---eeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEEE
Q psy403          117 -----PECNSTQLDHAVLVVGYGTDENGND---YWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       117 -----~~c~~~~~~Hav~ivGyg~~~~~~~---ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                           ..|..  ..+.+.|.+|.......+   ..+|.+++...--+..  .|+.|++||+.. .|+. .++|||+|||
T Consensus        89 Y~~~~~~C~~--~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~-~c~~-~~~HaV~iVG  163 (208)
T 1o0e_A           89 YKAVQGPCQA--ASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG-PCGT-KLNHGVTIVG  163 (208)
T ss_dssp             CCSSCCCCCC--CCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC-CCCS-CCCEEEEEEE
T ss_pred             ccCCCCcCCC--CCceEEeCeEEEeCCCCHHHHHHHHHhCCEEEEEEccCcccccccCceECC-CCCC-cCCEEEEEEE
Confidence                 34543  234556777765322111   1124455444333332  588999999864 5875 5799999975

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=98.39  E-value=1.7e-07  Score=76.62  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             CccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHH-hcCCeEEEEeccCccccccc-cceEe-----
Q psy403           49 NQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVA-TIGPVSIAIDASHQSFQFYS-EGVYY-----  115 (233)
Q Consensus        49 ~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~-~~GPv~v~~~~~~~~f~~Y~-~Giy~-----  115 (233)
                      +.++++++|+.|..++++... .+...     ..+...++++|.++.. ..| ..-+. . ...|.+.. .||..     
T Consensus        11 ~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~g-C~GG~-~-~~a~~y~~~~Gi~~e~~yP   87 (214)
T 2bdz_A           11 GAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHG-CDGGY-Q-TTSLQYVVDNGVHTEREYP   87 (214)
T ss_dssp             TCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTTSCT-TBCCC-H-HHHHHHHHHHCEEBTTTSC
T ss_pred             CCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCCCCC-CCCCC-H-HHHHHHHHHhCCCccccCC
Confidence            567788889999988765431 11111     1123457888887752 111 00000 0 11222211 14432     


Q ss_pred             ----CCCCCCCCC-CeeEEEeeeeecCCCC----ceeEEeecCCccccccc--cceeccCCccccCCCccccccceeEEE
Q psy403          116 ----EPECNSTQL-DHAVLVVGYGTDENGN----DYWLVKNSWNTTWGDEG--YIKMARNRVYYEPECNSTQLDHAVLVV  184 (233)
Q Consensus       116 ----~~~c~~~~~-~Hav~ivGyg~~~~~~----~ywivkNSwg~~wg~~G--~~~~~r~gi~~~~~c~~~~~~haV~vV  184 (233)
                          ...|..... .+.+.|.+|.......    ... |.+++...-.+..  .|+.|++||+.. .|+. .++|||+||
T Consensus        88 Y~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~-l~~gPV~v~i~~~~~~f~~Y~~Giy~~-~~~~-~~~HaV~iV  164 (214)
T 2bdz_A           88 YEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQA-IANQPVSVVTDSRGRGFQFYKGGIYEG-PCGT-NTDHAVTAV  164 (214)
T ss_dssp             CCSSCCCCCTTTCCSCEECCCEEEEECSSBHHHHHHH-HHHSCEEEEECCCSHHHHTCCSSEECC-SCCS-CCCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCceeeecCEEEeCCCcHHHHHHH-HHhCCEEEEEeeChhHhhcccCceecC-CCCC-CCCeEEEEE
Confidence                234654333 4567788886532211    111 3344433333332  478899999865 5875 589999997


Q ss_pred             E
Q psy403          185 G  185 (233)
Q Consensus       185 G  185 (233)
                      |
T Consensus       165 G  165 (214)
T 2bdz_A          165 G  165 (214)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=98.20  E-value=1.5e-06  Score=78.48  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=17.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCcc
Q psy403            2 DQAFQYIKDNHGIDTESSYPY   22 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY   22 (233)
                      ..|++|++ ++||++|++|||
T Consensus       150 ~~a~~~i~-kyGivpe~~yP~  169 (457)
T 2e01_A          150 SMFLNLVK-KYGLIPKDLYGD  169 (457)
T ss_dssp             HHHHHHHH-HHCCCBGGGSCS
T ss_pred             HHHHHHHH-HcCccchhhcCC
Confidence            46899995 579999999999

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=98.20  E-value=1.5e-06  Score=78.40  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAM   25 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~   25 (233)
                      ..|++|++ ++||+++++|||+..
T Consensus       147 ~~a~~~i~-kyGl~p~~~yP~~~~  169 (453)
T 2cb5_A          147 DMLVNIVE-KYGVIPKKCFPESYT  169 (453)
T ss_dssp             HHHHHHHH-HHCCCBGGGSCCCTG
T ss_pred             HHHHHHHH-HcCccchhhcccccc
Confidence            57899996 579999999999874

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=98.18  E-value=5.6e-07  Score=79.21  Aligned_cols=32  Identities=38%  Similarity=0.827  Sum_probs=26.2

Q ss_pred             EEeecCCccccccccceeccCCccccCCCccc
Q psy403          144 LVKNSWNTTWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus       144 ivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      |||||||+.||++|||++.|+.-...+.|+++
T Consensus       323 IVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~  354 (363)
T 3tnx_A          323 LIRNSWGTGWGENGYIRIKRGTGNSYGVCGLY  354 (363)
T ss_dssp             EEECSBCTTSTBTTEEEEECCSCCSSCGGGTT
T ss_pred             EEEeCCCCccccCcEEEEEcCCCCCCCcCCcc
Confidence            78999999999999999999864444558764

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=87.59  E-value=2.4  Score=32.79  Aligned_cols=56  Identities=20%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .+.+++++++.++-|+.+..+.. +      +       -+....+||+.++||-...++.++.++=|=|
T Consensus        88 ls~~eV~~~~~~nk~i~i~~~~v-e------~-------~~~~~~gHAlav~Gy~~~~ng~~~y~~WNPW  143 (174)
T 1cv8_A           88 TTYNEVDNLTKNNKGIAILGSRV-E------S-------RNGMHAGHAMAVVGNAKLNNGQEVIIIWNPW  143 (174)
T ss_dssp             CCHHHHHHHHHTTCCEEEEEEES-S------C-------BTTBCCEEEEEEEEEEEETTSCEEEEEECTT
T ss_pred             CCHHHHHHHHhcCCceEEEcccc-c------C-------CCCCCCceeEEEEeeeeecCCceEEEEeCCc
Confidence            47889999999999988776542 1      1       0113568999999999866788999999998

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=86.97  E-value=2.2  Score=33.22  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .+.++++++|.++-|+.+...-..+             ..+....+||+.|+||-. .++.++.++-|=|
T Consensus        97 ls~neV~~~i~~Nk~I~v~~~~v~e-------------~~~~~~~gHA~av~Gya~-~~~~~~y~~WNPW  152 (183)
T 1pxv_A           97 PSYNQVDQLTKDNVGIMILAQSVSQ-------------NPNDPHLGHALAVVGNAK-INDQEKLIYWNPW  152 (183)
T ss_dssp             CCHHHHHHHHHTTCCEEEEEECCCS-------------STTSCCCEEEEEEEEEEE-ETTEEEEEEECTT
T ss_pred             CCHHHHHHHHhcCCcEEEEcccccc-------------CCCCccCceeEEEEeeee-cCCCeEEEEeCCc
Confidence            4889999999999998877653211             112246789999999998 5577889999988

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=84.21  E-value=3.4  Score=35.57  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecC
Q psy403           80 GDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSW  149 (233)
Q Consensus        80 ~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSw  149 (233)
                      .+.++++++|..+-||.+.+....+.             .+....+||+.++||.. .++.++.++-|=|
T Consensus       273 ls~deVk~~id~Nk~I~v~~~~v~~~-------------~n~~~~gHAlavvGyA~-~~~~~~y~~WNPW  328 (367)
T 1x9y_A          273 PSYNQVDQLTKDNVGIMILAQSVSQN-------------PNDPHLGHALAVVGNAK-INDQEKLIYWNPW  328 (367)
T ss_dssp             CCHHHHHHHHHTTCCEEEEEEETTSC-------------SSSCCCSEEEEEEEEEE-ETTEEEEEEECTT
T ss_pred             CCHHHHHHHHhcCCcEEEEccccccC-------------CCCccCceeEEEEeccc-cCCCcEEEEecCc
Confidence            47889999999999998887753211             11235689999999976 4477899999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	3e-30
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	6e-26
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	9e-25
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	4e-21
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	3e-24
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	5e-24
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	2e-19
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	7e-24
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	7e-20
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	3e-22
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	6e-21
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	5e-22
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	1e-21
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-21
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	1e-20
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	2e-21
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	1e-19
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	3e-21
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	2e-20
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	4e-18
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-20
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	2e-18
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	4e-20
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	3e-19
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	3e-18
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	3e-19
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-18
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-18
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	3e-18
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	4e-18
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	9e-16
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	2e-17
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	9e-16
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	3e-16
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	6e-16
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	2e-10
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	2e-10
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	4e-07
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	4e-07

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 50/178 (28%)

Query: 56  GDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY 115
             +       K    +          E  L  AVAT+GP+S+AIDA H+SF FY EG+Y+
Sbjct: 189 ATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 248

Query: 116 EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST 175
           EP+C+S  +DH VLVVGYG +                                       
Sbjct: 249 EPDCSSEDMDHGVLVVGYGFE--------------------------------------- 269

Query: 176 QLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                       T+ + N YWLVKNSW   WG  GY+KMA++R N+CG+AS+AS+P V
Sbjct: 270 -----------STESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 6e-26
 Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 50/180 (27%)

Query: 54  TSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGV 113
            + D+ C+Y+   S A D G+  +  G E  L  AVAT+GP+S+A+DA H SFQFY  G+
Sbjct: 92  VAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151

Query: 114 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECN 173
           Y+EP+C+S  LDH VLVVGYG +                                     
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFE------------------------------------- 174

Query: 174 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
                        G + + + YWLVKNSW   WG  GY+K+A+++ N+CG+A++AS+P V
Sbjct: 175 -------------GANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 9e-25
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 3/165 (1%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
             +A+ +      +       +     +        +      C    +    +   +  
Sbjct: 77  PAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPG 136

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
                K               E  + A +   GPV  A    +  F  Y  G  Y+    
Sbjct: 137 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSG-VYQHVTG 194

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
                HA+ ++G+G  ENG  YWLV NSWNT WGD G+ K+ R +
Sbjct: 195 EMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 238

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 4e-21
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 126 HAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVG 185
           +          E      + KN             +      Y+         HA+ ++G
Sbjct: 147 YGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILG 206

Query: 186 YGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL 232
           +G  ENG  YWLV NSWNT WGD G+ K+ R + ++CG+ S     +
Sbjct: 207 WGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ-DHCGIESEVVAGI 251

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 3e-24
 Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 12/183 (6%)

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
           + K      V     ++ +    K        G ++ A      +    S+  Y     +
Sbjct: 37  QLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD 96

Query: 121 STQLDH----AVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI------KMARNRVYYEP 170
                     A     Y     G +  L +   N      G         + R+ VYYEP
Sbjct: 97  QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP 156

Query: 171 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASF 230
            C +  ++H VLVVGYG D NG +YWLVKNSW   +G+EGYI+MARN+ N+CG+AS  S+
Sbjct: 157 SC-TQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214

Query: 231 PLV 233
           P +
Sbjct: 215 PEI 217

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 93.5 bits (231), Expect = 5e-24
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 58  DNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP 117
                 +        GY  +P   E     A+A   P+S+ ++A  + FQ Y  GV+  P
Sbjct: 94  KCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP 152

Query: 118 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
                +LDHAV  VGYGT  +G +Y ++KNSW   WG++GY+++ R     +  C
Sbjct: 153 CGT--KLDHAVTAVGYGT-SDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTC 204

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 81.2 bits (199), Expect = 2e-19
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 171 ECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCGVASS 227
               T+LDHAV  VGYGT  +G +Y ++KNSW   WG++GY+++ R   N +  CGV  S
Sbjct: 151 GPCGTKLDHAVTAVGYGT-SDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKS 209

Query: 228 ASFPL 232
           + +P 
Sbjct: 210 SYYPF 214

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 94.7 bits (234), Expect = 7e-24
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 140 NDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVK 199
                   +      D    +    R   + +       HAV +VGY     G DYW+V+
Sbjct: 208 LAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSN-AQGVDYWIVR 266

Query: 200 NSWNTTWGDEGYIKMARNRENNCGVASSASFPLV 233
           NSW+T WGD GY   A N  +   +       ++
Sbjct: 267 NSWDTNWGDNGYGYFAANI-DLMMIEEYPYVVIL 299

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 83.9 bits (206), Expect = 7e-20
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 103 HQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMA 162
             +F+ Y      + +       HAV +VGY     G DYW+V+NSW+T WGD GY   A
Sbjct: 224 LDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSN-AQGVDYWIVRNSWDTNWGDNGYGYFA 282

Query: 163 RNR 165
            N 
Sbjct: 283 ANI 285

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 88.9 bits (219), Expect = 3e-22
 Identities = 52/114 (45%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 59  NCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPE 118
               K         G+ ++PE DE  L  AVA   PVS+AIDA    FQFYSEGV+    
Sbjct: 98  CDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGVFTG-- 154

Query: 119 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
              T+LDH V +VGYGT  +G  YW VKNSW   WG++GYI+M R     E  C
Sbjct: 155 SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLC 208

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 85.4 bits (210), Expect = 6e-21
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR---NRENNCG 223
                   T+LDH V +VGYGT  +G  YW VKNSW   WG++GYI+M R   ++E  CG
Sbjct: 150 GVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCG 209

Query: 224 VASSASFPL 232
           +A  AS+P+
Sbjct: 210 IAMEASYPI 218

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 5e-22
 Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 32/165 (19%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M  AFQY++ N GID+E +YPY                                   ++C
Sbjct: 68  MTNAFQYVQKNRGIDSEDAYPYVGQE-------------------------------ESC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
            Y      A  RGY +IPEG+E  LK AVA +GPVS+AIDAS  SFQFYS+GVYY+  CN
Sbjct: 97  MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCN 156

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           S  L+HAVL VGYG    GN +W++KNSW   WG++GYI MARN+
Sbjct: 157 SDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNK 200

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
           YY+  CNS  L+HAVL VGYG    GN +W++KNSW   WG++GYI MARN+ N CG+A+
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIAN 208

Query: 227 SASFPLV 233
            ASFP +
Sbjct: 209 LASFPKM 215

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 1e-21
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 56  GDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYY 115
           G        A+   V          +E KL A +A  GP+S+AI+A    F  +      
Sbjct: 91  GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPL 150

Query: 116 EPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
            P C+   +DHAVL+VGYG   +   +W +KNSW T WG++GY  + R  
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQ-RSDVPFWAIKNSWGTDWGEKGYYYLHRGS 199

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 1e-20
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVAS 226
              P C+   +DHAVL+VGYG   +   +W +KNSW T WG++GY  + R     CGV +
Sbjct: 149 PLRPLCSPWLIDHAVLLVGYGQ-RSDVPFWAIKNSWGTDWGEKGYYYLHRG-SGACGVNT 206

Query: 227 SASFPLV 233
            AS  +V
Sbjct: 207 MASSAVV 213

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-21
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 44  CHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASH 103
              + NQ    +    C   R  +      Y  +      K+ A +   GP+S  I A+ 
Sbjct: 135 ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS--GREKMMAEIYANGPISCGIMATE 192

Query: 104 QSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
                   G  Y    ++T ++H V V G+G   +G +YW+V+NSW   WG+ G++++  
Sbjct: 193 --RLANYTGGIYAEYQDTTYINHVVSVAGWGI-SDGTEYWIVRNSWGEPWGERGWLRIVT 249

Query: 164 NR 165
           + 
Sbjct: 250 ST 251

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 1e-19
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 102 SHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGND--YWLVKNSWNTTWGDEGYI 159
                           EC++ +      V  YG+          +  N   +        
Sbjct: 134 QECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATER 193

Query: 160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARN-- 217
                   Y    ++T ++H V V G+G   +G +YW+V+NSW   WG+ G++++  +  
Sbjct: 194 LANYTGGIYAEYQDTTYINHVVSVAGWGI-SDGTEYWIVRNSWGEPWGERGWLRIVTSTY 252

Query: 218 -----RENNCGVASSASF--PLV 233
                   N  +    +F  P+V
Sbjct: 253 KDGKGARYNLAIEEHCTFGDPIV 275

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 84.6 bits (208), Expect = 2e-20
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 114 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECN 173
                CN  +      +  Y +  +      ++     +         A  +        
Sbjct: 109 DAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGEC 168

Query: 174 STQLDHAVLVVGYGTDEN---------GNDYWLVKNSWNTTWGDEGYIKMARNR---ENN 221
             QL+HAV++VG+G  E           + Y+++KNSW   WG+ G+I +  +       
Sbjct: 169 GDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRK 228

Query: 222 CGVASSASFPLV 233
           CG+ + A  PL+
Sbjct: 229 CGLGTDAFIPLI 240

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 78.1 bits (191), Expect = 4e-18
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 12/96 (12%)

Query: 86  KAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDEN------- 138
           K A+  +GP+SI++      F FY EG++        QL+HAV++VG+G  E        
Sbjct: 137 KEALRFLGPISISVAV-SDDFAFYKEGIF--DGECGDQLNHAVMLVGFGMKEIVNPLTKK 193

Query: 139 --GNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
              + Y+++KNSW   WG+ G+I +  +      +C
Sbjct: 194 GEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKC 229

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 83.1 bits (204), Expect = 4e-20
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 2/132 (1%)

Query: 102 SHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM 161
           +  S+ + S      P   S     A +       ++                       
Sbjct: 85  TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSW 144

Query: 162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENN 221
                     C S QLDH VL+VGY  D     YW++KNSW T WG+EGYI++A+   N 
Sbjct: 145 MTYTGGVMTSCVSEQLDHGVLLVGYN-DSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQ 202

Query: 222 CGVASSASFPLV 233
           C V   AS  +V
Sbjct: 203 CLVKEEASSAVV 214

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 80.4 bits (197), Expect = 3e-19
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 133 YGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENG 192
              +  GN    +     +   +         +         T++DHAV  VGYG    G
Sbjct: 113 VQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKS-GG 171

Query: 193 NDYWLVKNSWNTTWGDEGYIKMARNRENN---CGVASSASFP 231
             Y L+KNSW T WG++GYI++ R   N+   CG+  S+ +P
Sbjct: 172 KGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 78.1 bits (191), Expect = 3e-18
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 73  GYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVG 132
           G   +   +E  L  A+A   PVS+ +++  + FQ Y  G++  P    T++DHAV  VG
Sbjct: 109 GVGRVQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFEGPCG--TKVDHAVTAVG 165

Query: 133 YGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
           YG    G  Y L+KNSW T WG++GYI++ R        C
Sbjct: 166 YGKS-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVC 204

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 80.4 bits (197), Expect = 3e-19
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 167 YYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR--ENNCGV 224
                   T +DHAV +VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN      CG+
Sbjct: 150 GIFTGPCGTAIDHAVTIVGYGT-EGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208

Query: 225 ASSASFPL 232
           A+  S+P+
Sbjct: 209 ATMPSYPV 216

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 77.7 bits (190), Expect = 4e-18
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 3   QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVT------VTSG 56
           +    I     I        +   +                    +  +        T+ 
Sbjct: 35  EGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQ 94

Query: 57  DDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE 116
           D  C         V     +    +         T  PVS+A+DA+  +F+ YS G++  
Sbjct: 95  DGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG 154

Query: 117 PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR 165
           P      +DHAV +VGYGT E G DYW+VKNSW+TTWG+EGY+++ RN 
Sbjct: 155 PCGT--AIDHAVTIVGYGT-EGGIDYWIVKNSWDTTWGEEGYMRILRNV 200

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 78.9 bits (193), Expect = 1e-18
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 35/172 (20%)

Query: 1   MDQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNC 60
           M+ AFQ+I +N GI++E +YPY                                     C
Sbjct: 68  MNPAFQFIVNNGGINSEETYPYRGQD-------------------------------GIC 96

Query: 61  RYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECN 120
                        Y ++P  +E  L+ AVA   PVS+ +DA+ + FQ Y  G++      
Sbjct: 97  NSTVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG--SC 153

Query: 121 STQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
           +   +HA+ VVGYGT EN  D+W+VKNSW   WG+ GYI+  RN    + +C
Sbjct: 154 NISANHALTVVGYGT-ENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKC 204

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 78.1 bits (191), Expect = 3e-18
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 115 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWN---TTWGDEGYIKMARNRVYYEPE 171
            +  CNST     V +  Y    + N+  L K   N   +   D         R      
Sbjct: 92  QDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG 151

Query: 172 CNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSA 228
             +   +HA+ VVGYGT EN  D+W+VKNSW   WG+ GYI+  RN    +  CG+   A
Sbjct: 152 SCNISANHALTVVGYGT-ENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFA 210

Query: 229 SFPL 232
           S+P+
Sbjct: 211 SYPV 214

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 77.3 bits (189), Expect = 4e-18
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 142 YWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNS 201
              V    +T   D    +  +           T+L+H V +VGY  +     YW+V+NS
Sbjct: 120 KQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQAN-----YWIVRNS 174

Query: 202 WNTTWGDEGYIKMAR-NRENNCGVASSASFP 231
           W   WG++GYI+M R      CG+A    +P
Sbjct: 175 WGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 71.2 bits (173), Expect = 9e-16
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 7/77 (9%)

Query: 88  AVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKN 147
               + P ++AIDAS   FQ YS G++  P     +L+H V +VGY  +     YW+V+N
Sbjct: 121 QAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGT--KLNHGVTIVGYQAN-----YWIVRN 173

Query: 148 SWNTTWGDEGYIKMARN 164
           SW   WG++GYI+M R 
Sbjct: 174 SWGRYWGEKGYIRMLRV 190

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 75.8 bits (185), Expect = 2e-17
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 108 FYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVY 167
           +    V    +    ++           +        V +   +   +            
Sbjct: 87  YPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSG 146

Query: 168 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGV 224
                  T  +H V++VGYGT  +G +YW+V+NSW   WG++GYI M RN       CG+
Sbjct: 147 IFTGPCGTAQNHGVVIVGYGTQ-SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205

Query: 225 ASSASFP 231
           A   S+P
Sbjct: 206 AQLPSYP 212

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 71.2 bits (173), Expect = 9e-16
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 55  SGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVY 114
           S                 G+  +   +E  L++AVA+  PVS+ ++A+   FQ YS G++
Sbjct: 90  SAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAAGAPFQHYSSGIF 148

Query: 115 YEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPEC 172
             P   +    H V++VGYGT  +G +YW+V+NSW   WG++GYI M RN       C
Sbjct: 149 TGPCGTAQN--HGVVIVGYGTQ-SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLC 203

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 72.8 bits (177), Expect = 3e-16
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 137 ENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYW 196
             G   + + N   +   +         R          ++DHAV  VGYG +     Y 
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171

Query: 197 LVKNSWNTTWGDEGYIKMAR---NRENNCGVASSASFPL 232
           L+KNSW T WG+ GYI++ R   N    CG+ +S+ +P+
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 71.6 bits (174), Expect = 6e-16
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 44  CHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDEYKLKAAVATIGPVSIAIDASH 103
                N          CR +     A     V   +              PVS+ ++A+ 
Sbjct: 79  GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAG 138

Query: 104 QSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMAR 163
           + FQ Y  G++  P  N  ++DHAV  VGYG      +Y L+KNSW T WG+ GYI++ R
Sbjct: 139 KDFQLYRGGIFVGPCGN--KVDHAVAAVGYGP-----NYILIKNSWGTGWGENGYIRIKR 191

Query: 164 NRVYYEPEC 172
                   C
Sbjct: 192 GTGNSYGVC 200

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 122 TQLDHAVLVVGYGTDENGND--YWLVKNSWNTTWGDEGYIKM 161
           + + HA+L+ G   DE       + V+NSW    G +G   M
Sbjct: 370 SLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 175 TQLDHAVLVVGYGTDENGND--YWLVKNSWNTTWGDEGYIKM 214
           + + HA+L+ G   DE       + V+NSW    G +G   M
Sbjct: 370 SLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 121 STQLDHAVLVVGYGT--DENGN-DYWLVKNSWNTTWGDEGYIKM 161
            + + HA+         D++G    W V+NSW    G +GY+ M
Sbjct: 366 ESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 174 STQLDHAVLVVGYGT--DENGN-DYWLVKNSWNTTWGDEGYIKM 214
            + + HA+         D++G    W V+NSW    G +GY+ M
Sbjct: 366 ESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.98
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.97
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.97
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.97
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.97
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.97
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.97
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.96
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.96
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.96
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.96
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.96
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.95
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.95
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.94
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.39
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.65
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	98.58
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	98.53
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	98.52
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	98.5
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	98.39
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	98.38
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	98.36
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	98.35
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	98.32
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	98.31
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	98.22
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	98.22
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	98.17
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	98.14
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	98.1
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	98.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	97.95
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	97.94
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	97.9
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	97.87
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	97.75

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=261.33  Aligned_cols=150  Identities=57%  Similarity=1.103  Sum_probs=122.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..||+|++++.++++|+++||...                               +..|..........+..+... ..+
T Consensus       167 ~~a~~y~~~~g~~~~e~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~  214 (316)
T d1cs8a_         167 DYAFQYVQDNGGLDSEESYPYEAT-------------------------------EESCKYNPKYSVANDAGFVDI-PKQ  214 (316)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCCEEEC-CSC
T ss_pred             HHHHHHHHhcCccccccccccccc-------------------------------ccccccccccccccccccccc-cCc
Confidence            479999987756888999999876                               444554444455566666665 458


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++|+++|+++|||+++++++.++|++|.+|||..+.|....++|||+|||||.+.                        
T Consensus       215 ~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~------------------------  270 (316)
T d1cs8a_         215 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES------------------------  270 (316)
T ss_dssp             HHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEEC------------------------
T ss_pred             HHHHHHHHHHhCCeEEEEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEcccc------------------------
Confidence            99999999999999999999778899999999998888766778888888887620                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                ++.++.+|||||||||++|||+|||||+|+..|.|||+++++||+|
T Consensus       271 --------------------------~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI~~~~~yP~v  316 (316)
T d1cs8a_         271 --------------------------TESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             --------------------------CSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             --------------------------cCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCccCCeeeeeeC
Confidence                                      0125688999999999999999999999986689999999999997

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=230.50  Aligned_cols=151  Identities=52%  Similarity=1.071  Sum_probs=122.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|+++..+++++++|||...                               +..|.........++..+.......
T Consensus        71 ~~a~~~~~~~g~~~~~~~~p~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  119 (221)
T d1fh0a_          71 ARAFQYVKENGGLDSEESYPYVAV-------------------------------DEICKYRPENSVAQDTGFTVVAPGK  119 (221)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCSCEEECCTTC
T ss_pred             hhhhhhhhhcCccccccCcCcccc-------------------------------ccccccccccccccceeeeecCCcH
Confidence            478999987766899999999877                               2223323333445666777766778


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      ++++|++|+++|||++++.+..+.|+.|++|++....|.....+|+++|||||.+ .                       
T Consensus       120 ~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~~~~~~~~~ha~~ivG~g~~-~-----------------------  175 (221)
T d1fh0a_         120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFE-G-----------------------  175 (221)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSSCCCEEEEEEEEEES-S-----------------------
T ss_pred             HHHHHHHHHhcCCceEEEEeccccccccCCCccccccccccCCcccEEEeeEecc-C-----------------------
Confidence            9999999999999999999877789999999998777766677888888888862 0                       


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                .+.++.+|||||||||++|||+|||||+|+..|+|||++++.||+|
T Consensus       176 --------------------------~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         176 --------------------------ANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             --------------------------SCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             --------------------------cCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence                                      1135678999999999999999999999997689999999999987

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-32  Score=224.90  Aligned_cols=147  Identities=56%  Similarity=1.076  Sum_probs=121.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|++...++.+|.+|||...                               ...|..........+..+...+..+
T Consensus        69 ~~a~~~~~~~g~~~~~~~y~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (215)
T d2r6na1          69 TNAFQYVQKNRGIDSEDAYPYVGQ-------------------------------EESCMYNPTGKAAKCRGYREIPEGN  117 (215)
T ss_dssp             HHHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCEEEECCTTC
T ss_pred             hhHHHHHHhcCccccccCCCcccc-------------------------------cccccccccccceeecceeeccccH
Confidence            578999987656899999999876                               3333334444556777888887789


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      .++||++|.++|||++.+.+..++|+.|++||+.+..|.....+|||+||||++ +                        
T Consensus       118 ~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~~~~~~~~~Hav~iVGy~~-~------------------------  172 (215)
T d2r6na1         118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-Q------------------------  172 (215)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCTTCCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHhhcccccEEEEEEeeechhcccCCCcccCCCCCCCCCCeeEEEEEeec-c------------------------
Confidence            999999999999999988876788999999999887887777888888888887 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   .+.+|||||||||++|||+|||||.|+.+|+|||++.+.||+|
T Consensus       173 -----------------------------~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         173 -----------------------------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             -----------------------------CCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCccccccC
Confidence                                         2346777777779999999999999997789999999999986

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-32  Score=223.69  Aligned_cols=145  Identities=55%  Similarity=1.054  Sum_probs=118.0

Q ss_pred             hHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCcH
Q psy403            3 QAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGDE   82 (233)
Q Consensus         3 ~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~~   82 (233)
                      .|+.++.+..|++++++|||...                               ...|......+..++..|..++...+
T Consensus        73 ~a~~~~~~~~g~~~~~~~p~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (217)
T d2h7ja1          73 TAFQYIIDNKGIDSDASYPYKAM-------------------------------DQKCQYDSKYRAATCSKYTELPYGRE  121 (217)
T ss_dssp             HHHHHHHHHTCEEBTTTSCCCSS-------------------------------CCCCCCCGGGEEECCCEEEECCTTCH
T ss_pred             ceeeehhhcccccccccCCCccc-------------------------------ccccccccccccceeeeeeccCccHH
Confidence            56666666779999999999877                               33333334455577788888888899


Q ss_pred             HHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccceec
Q psy403           83 YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMA  162 (233)
Q Consensus        83 ~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~~  162 (233)
                      +.|+++|++.|||++++.....+|..|.+|||..+.+. ..++|||+|||||+ +                         
T Consensus       122 ~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~~~~-~~~~Hav~iVGy~~-~-------------------------  174 (217)
T d2h7ja1         122 DVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGD-L-------------------------  174 (217)
T ss_dssp             HHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCTTCC-SCCCEEEEEEEEEE-E-------------------------
T ss_pred             HHHHHHhhcCceEEEEEeeehhhhcccCCcceeCCCCC-CCCCeEEEEEeccc-C-------------------------
Confidence            99999999999999998876788999999999876554 45678888888887 2                         


Q ss_pred             cCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          163 RNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       163 r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                  .+++|||||||||++||++|||||+|+..|+|||+++++||+|
T Consensus       175 ----------------------------~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         175 ----------------------------NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             ----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             ----------------------------CCceEEEEEcCCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence                                        3456777777779999999999999997689999999999987

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.97  E-value=9.9e-32  Score=230.90  Aligned_cols=144  Identities=28%  Similarity=0.529  Sum_probs=112.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|++ ++||++|++|||...                               ++.|..... ..+.+.+|..+...+
T Consensus       154 ~~a~~~~~-~~Gi~~e~~yPY~~~-------------------------------~~~C~~~~~-~~~~~~~~~~~~~~~  200 (302)
T d1xkga1         154 PRGIEYIQ-HNGVVQESYYRYVAR-------------------------------EQSCRRPNA-QRFGISNYCQIYPPN  200 (302)
T ss_dssp             HHHHHHHH-HHCEEBGGGSCCCSS-------------------------------CCCCCCCSS-CEECCSEEEECCSCC
T ss_pred             chhhhhhc-cCcccchhhcccccc-------------------------------ccccccccc-ccceeeeeeeecCch
Confidence            57999996 469999999999987                               556664333 346788888887789


Q ss_pred             HHHHHHHHHhcCC-eEEEEec-cCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           82 EYKLKAAVATIGP-VSIAIDA-SHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        82 ~~~i~~~i~~~GP-v~v~~~~-~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      +++|+++|+..+| +++.+.+ ..+.|+.|.+||+....|.....+|||+|||||+ +                      
T Consensus       201 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~~~~~~~~~~HaV~iVGyg~-~----------------------  257 (302)
T d1xkga1         201 ANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSN-A----------------------  257 (302)
T ss_dssp             HHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSCCEEEEEEEEEEEE-E----------------------
T ss_pred             HHHHHHhhhhcccccceeecccccchhhccccceeecCCCCCCcCCEEEEEEEEec-c----------------------
Confidence            9999999987554 4444433 1356888899999877776555567777777766 2                      


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                     ++.+|||||||||++|||+|||||+|+. |+|||++.+.+|+|
T Consensus       258 -------------------------------~g~~YWivkNSWG~~WGe~GY~~i~~~~-n~cgi~~~~~~~~~  299 (302)
T d1xkga1         258 -------------------------------QGVDYWIVRNSWDTNWGDNGYGYFAANI-DLMMIEEYPYVVIL  299 (302)
T ss_dssp             -------------------------------TTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTCCEEEEC
T ss_pred             -------------------------------CCeEEEEEEcCCCCchhcCCEEEEECCC-CeeccCCCcEEEEe
Confidence                                           3567778888889999999999999997 99999999999986

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=218.35  Aligned_cols=143  Identities=38%  Similarity=0.739  Sum_probs=103.1

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..+++|++++.++++|.++||...                               ...|..........+..+... ..+
T Consensus        69 ~~~~~~~~~~g~~~~e~~~py~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~  116 (214)
T d1m6da_          69 SNAYSAIKNLGGLETEDDYSYQGH-------------------------------MQSCQFSAEKAKVYIQDSVEL-SQN  116 (214)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCCCGGGCCBCCSEEEEC-CSC
T ss_pred             hhhHHHHHhCCcccccccccccCc-------------------------------cCcccccccccceeeeccccc-ccC
Confidence            468899987666889999999976                               222222222233344444444 458


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeC--CCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccc
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYE--PECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYI  159 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~--~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~  159 (233)
                      +++||++|+++|||+++|.+.  .|++|..|++..  ..+.....+|||+||||++                        
T Consensus       117 ~~~ik~~i~~~gpv~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~------------------------  170 (214)
T d1m6da_         117 EQKLAAWLAKRGPISVAINAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQ------------------------  170 (214)
T ss_dssp             HHHHHHHHHHHCCEEEEECTH--HHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEE------------------------
T ss_pred             HHHHHHHHHhcCCeEEEEEEE--ehhhccCCccccccCCCCCcccceeEEEEcccc------------------------
Confidence            999999999999999999883  455566665532  2333334556666666654                        


Q ss_pred             eeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          160 KMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       160 ~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   + .+.+|||||||||++||++|||||.|+. |+|||++.++||+|
T Consensus       171 -----------------------------~-~~~~ywivkNSWG~~WGd~Gy~~i~~g~-n~cgI~~~~~~~~~  213 (214)
T d1m6da_         171 -----------------------------R-SDVPFWAIKNSWGTDWGEKGYYYLHRGS-GACGVNTMASSAVV  213 (214)
T ss_dssp             -----------------------------E-TTEEEEEEECSBCTTSTBTTEEEEESSS-CGGGTTTTCEEEEC
T ss_pred             -----------------------------c-CCceEEEEECCCCCccccCCEEEEEcCC-CcccccceeeEEec
Confidence                                         2 3567888888889999999999999996 89999999999986

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-31  Score=226.28  Aligned_cols=156  Identities=27%  Similarity=0.537  Sum_probs=114.9

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|++ ++|+++|++|||...+...+.......|..                ...|........+++.+|..+.  +
T Consensus       110 ~~a~~~~~-~~G~~~e~~~PY~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~i~~~~~~~--~  170 (275)
T d1deua_         110 LSVWDYAH-QHGIPDETCNNYQAKDQECDKFNQCGTCNE----------------FKECHAIRNYTLWRVGDYGSLS--G  170 (275)
T ss_dssp             HHHHHHHH-HTCBCBGGGSCCCSSCCCCCHHHHSEEEEE----------------TTEEEECSSCCCBCEEEEEEEC--S
T ss_pred             ccccchhh-cccccccccccccccCCCcccccccCcccc----------------cceeeeccceeEEEeCceeecC--c
Confidence            57899996 569999999999987543332211111111                2234444455667888888773  6


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +++||++|+++|||+++|++ .++|++|++|||.+. |....++|||+|||||+ +                        
T Consensus       171 ~e~ik~~l~~~GPv~v~~~~-~~~f~~y~~Gi~~~~-~~~~~~~HAV~IVGyg~-~------------------------  223 (275)
T d1deua_         171 REKMMAEIYANGPISCGIMA-TERLANYTGGIYAEY-QDTTYINHVVSVAGWGI-S------------------------  223 (275)
T ss_dssp             HHHHHHHHHHHCCEEEEECC-CHHHHTCCSSEECBC-CSCCCCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHHhCCCcEEEEEe-ccchhccCCCcccCc-cccccCCeEEEEEEEec-c------------------------
Confidence            78899999999999999998 578999999999754 43445677777777765 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcc--------cccccccc--c
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNC--------GVASSASF--P  231 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~c--------gi~~~~~~--~  231 (233)
                                                   ++.+|||||||||++||++|||||+|+. ++|        +||+++.|  |
T Consensus       224 -----------------------------~g~~ywivrNSWG~~WGd~Gyf~I~~~~-~~~~~~~~~~~~ie~~~~~~~p  273 (275)
T d1deua_         224 -----------------------------DGTEYWIVRNSWGEPWGERGWLRIVTST-YKDGKGARYNLAIEEHCTFGDP  273 (275)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECTT-HHHHTGGGTBTTTTSCEEEEEE
T ss_pred             -----------------------------CCcEEEEEECCCCCCcccCCEEEEECCC-CCCCccccccccccCccEecCC
Confidence                                         3466777777889999999999999996 555        48999998  7


Q ss_pred             cC
Q psy403          232 LV  233 (233)
Q Consensus       232 ~~  233 (233)
                      +|
T Consensus       274 ~~  275 (275)
T d1deua_         274 IV  275 (275)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.97  E-value=5e-31  Score=215.79  Aligned_cols=144  Identities=34%  Similarity=0.702  Sum_probs=108.1

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|+.|++ +.|+++|+++||...+.                              ..|..........+..+..++..+
T Consensus        69 ~~~~~~~~-~~g~~~e~~~py~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  117 (218)
T d1yala_          69 TTSLQYVA-NNGVHTSKVYPYQAKQY------------------------------KCRATDKPGPKVKITGYKRVPSNC  117 (218)
T ss_dssp             HHHHHHHH-HHCBCBTTTSCCCSSCC------------------------------CCCGGGCCSCCBCCSEEEECCSSB
T ss_pred             chhhhhhh-hhcccccccCCcccccC------------------------------ccccccccccceeeccceEeCCcc
Confidence            46889986 46999999999987721                              112222233445667788886644


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      + +++++++.+|||++++.+..+.|+.|++|||..+.+  ...+|||+|||||+ +                        
T Consensus       118 ~-~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~~~--~~~~Hav~IVGyg~-~------------------------  169 (218)
T d1yala_         118 E-TSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCG--TKLDHAVTAVGYGT-S------------------------  169 (218)
T ss_dssp             H-HHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCC--SCCCEEEEEEEEEE-E------------------------
T ss_pred             H-HHHHHHHHhCCceEEEEecccchhhcccceeeeccc--ccCCcEEEEEEeec-c------------------------
Confidence            4 555666778999999999777888999999975443  35677777777776 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                   ++++|||||||||++||++|||||+|+.   .|+|||++.++||+.
T Consensus       170 -----------------------------~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~  215 (218)
T d1yala_         170 -----------------------------DGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK  215 (218)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEEC
T ss_pred             -----------------------------CCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceeeeccC
Confidence                                         3456777777779999999999999985   268999999999974

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.97  E-value=2.8e-30  Score=210.88  Aligned_cols=143  Identities=36%  Similarity=0.726  Sum_probs=107.1

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCC-CCcceEeceEEEcCCC
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKR-AKSGAVDRGYVDIPEG   80 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~-~~~~~~i~~~~~~~~~   80 (233)
                      ..++++++ +.|+++|++|||...                               ...|.... ......+..+..++..
T Consensus        69 ~~~~~~~~-~~G~~~e~~yPy~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  116 (216)
T d1ppoa_          69 PYALEYVA-KNGIHLRSKYPYKAK-------------------------------QGTCRAKQVGGPIVKTSGVGRVQPN  116 (216)
T ss_dssp             HHHHHHHH-HHCBCBTTTSCCCSS-------------------------------CCCCCGGGCCSCCBCCCEEEECCSS
T ss_pred             cccccccc-ccCccccccCCcccc-------------------------------ccccccccccccceeeccceeeccc
Confidence            46889996 569999999999876                               22222211 1222344455566666


Q ss_pred             cHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCccccccccce
Q psy403           81 DEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus        81 ~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~  160 (233)
                      .++.||++|++ |||++++++..+.|+.|++|+|..+.+  ...+|||+|||||+ .                       
T Consensus       117 ~~~~~~~~l~~-gpv~~~~~~~~~~~~~y~~g~~~~~~~--~~~~Hav~iVGyg~-~-----------------------  169 (216)
T d1ppoa_         117 NEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGPCG--TKVDHAVTAVGYGK-S-----------------------  169 (216)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCSCC--SCCCEEEEEEEEEE-E-----------------------
T ss_pred             HHHHHHHHHhh-CCCceeeeeccccceecCCcccccccc--ccCCcEEEEEeccc-c-----------------------
Confidence            78888887765 999999998777788999999975433  45678888888876 2                       


Q ss_pred             eccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403          161 MARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV  233 (233)
Q Consensus       161 ~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~  233 (233)
                                                    ++.+|||||||||++||++|||||+|+..   |.|||++++.||++
T Consensus       170 ------------------------------~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  215 (216)
T d1ppoa_         170 ------------------------------GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  215 (216)
T ss_dssp             ------------------------------TTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEEC
T ss_pred             ------------------------------CCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEeeeeec
Confidence                                          34567778888899999999999999863   56999999999985

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.96  E-value=8.7e-30  Score=207.79  Aligned_cols=142  Identities=44%  Similarity=0.787  Sum_probs=105.6

Q ss_pred             HHHHHH--hCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            4 AFQYIK--DNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         4 a~~y~~--~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ++.++.  ++.+++++++|||...+..                            ...+........+++..+..+. .+
T Consensus        71 ~~~~~~~~~~~~~~~~~~ypy~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~-~~  121 (215)
T d1me4a_          71 AFEWIVQENNGAVYTEDSYPYASGEGI----------------------------SPPCTTSGHTVGATITGHVELP-QD  121 (215)
T ss_dssp             HHHHHHHHSTTEEEBTTTSCCCCTTSC----------------------------CCCCCCSSCCEEEECCEEEECC-SC
T ss_pred             cceeeeeccCCccccCcccCccccccc----------------------------cccccccccccceEeeeeeecc-cc
Confidence            444443  2347899999999876211                            0111112223446777888775 48


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      .+.||++|+++|||++++.+.  .|+.|.++++..  |.....+|||+|||||+ +                        
T Consensus       122 ~~~ik~~i~~~gpv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Hav~IVGyg~-~------------------------  172 (215)
T d1me4a_         122 EAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTS--CVSEQLDHGVLLVGYND-S------------------------  172 (215)
T ss_dssp             HHHHHHHHHHHCCEEEEECCT--TGGGCCSSEECS--CCCSCCCEEEEEEEEES-S------------------------
T ss_pred             HHHHHHHHHhcCceeEEEEee--eecccccccccC--CccccceeEEEEEEccc-c------------------------
Confidence            999999999999999999873  588888888853  43455677777777776 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~~  233 (233)
                                                   ++.+|||||||||++||++|||||+|++ |+|||+++++||+|
T Consensus       173 -----------------------------~~~~ywivrNSWG~~WGd~Gy~~i~~g~-n~cgI~~~~~~~~~  214 (215)
T d1me4a_         173 -----------------------------AAVPYWIIKNSWTTQWGEEGYIRIAKGS-NQCLVKEEASSAVV  214 (215)
T ss_dssp             -----------------------------SSSCEEEEECSBCTTSTBTTEEEEESSS-CGGGTTSSEEEEEC
T ss_pred             -----------------------------CCceEEEEEcCCCCCcccCCEEEEECCC-CccccCCceeeEec
Confidence                                         3456777777779999999999999997 99999999999987

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.96  E-value=7.2e-30  Score=208.61  Aligned_cols=145  Identities=42%  Similarity=0.810  Sum_probs=101.8

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|+.+++++.++++|.+|||....                               ..|........+....+......+
T Consensus        71 ~~~~~~~~~~g~v~~e~~yp~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  119 (218)
T d1aeca_          71 TDGFQFIINNGGINTEENYPYTAQD-------------------------------GECNVDLQNEKYVTIDTYENVPYN  119 (218)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSSC-------------------------------CCCCHHHHHCCCBCCCEEEECCSS
T ss_pred             cccceeehhCceecCccccCccccc-------------------------------Cccceeccccccceeccccccccc
Confidence            4577888776669999999998772                               122211111112222233333457


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      .++|+++|+.+|||+++|.+..+.|..+.+|++..+ + ....+|||+||||++ +                        
T Consensus       120 ~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~-~-~~~~~Hav~iVGyg~-~------------------------  172 (218)
T d1aeca_         120 NEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP-C-GTAIDHAVTIVGYGT-E------------------------  172 (218)
T ss_dssp             CHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCS-C-CSSCCEEEEEEEEEE-E------------------------
T ss_pred             HHHHHHHHhhcCCceeEEEecchhhhcCCCCccccc-c-cccCCceeEEEEEec-c------------------------
Confidence            788999999999999999986555666677777532 2 234577777777765 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC--CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR--ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~--~~~cgi~~~~~~~~~  233 (233)
                                                   .+.+|||||||||++||++|||||+|+.  .|+|||+++++||+.
T Consensus       173 -----------------------------~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~~  217 (218)
T d1aeca_         173 -----------------------------GGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVK  217 (218)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEEC
T ss_pred             -----------------------------CCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcceeccc
Confidence                                         3456777777779999999999999962  379999999999984

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.96  E-value=2.7e-29  Score=204.77  Aligned_cols=143  Identities=37%  Similarity=0.781  Sum_probs=108.2

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|++++.++..|++|||.+.                               ...|........+++..|..+...+
T Consensus        69 ~~a~~y~~~~g~~~~e~~~p~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (216)
T d1cqda_          69 NPAFQFIVNNGGINSEETYPYRGQ-------------------------------DGICNSTVNAPVVSIDSYENVPSHN  117 (216)
T ss_dssp             HHHHHHHHHHTSBCBTTTSCCCSS-------------------------------CCCCCSSSCCCSBCCSEEEECCSSC
T ss_pred             HHHHHHHHhcCCccccccCCcccc-------------------------------ccccccccCCceeEeeeEEecCCcc
Confidence            579999987756777899999876                               2333333444556677777775544


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                       +++++.+...+|+++++.+...+|..|++|||.+  +.....+|||+|||||+ +                        
T Consensus       118 -~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~--~~~~~~~Hav~iVGyg~-~------------------------  169 (216)
T d1cqda_         118 -EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVVGYGT-E------------------------  169 (216)
T ss_dssp             -HHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC--CCCCCCCEEEEEEEEEE-E------------------------
T ss_pred             -hhhHHHHhhcCCcceeeeeecccccccccCcccc--cccccCCcceeeecccc-c------------------------
Confidence             4566666777999999998778899999999964  33345677777777776 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCcccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPL  232 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~  232 (233)
                                                   .+++|||||||||++||++||+||+|+.   .+.|||++.++||+
T Consensus       170 -----------------------------~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~  214 (216)
T d1cqda_         170 -----------------------------NDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV  214 (216)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             -----------------------------cCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceeeeee
Confidence                                         3456777777789999999999999985   25799999999996

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.96  E-value=7.3e-29  Score=203.23  Aligned_cols=146  Identities=49%  Similarity=0.841  Sum_probs=108.7

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|+.++++..|+++|.++||....+                              ..|.........++..+..+...+
T Consensus        71 ~~a~~~~~~~g~~~~e~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  120 (224)
T d1s4va_          71 DYAFEFIKQRGGITTEANYPYEAYDG------------------------------TCDVSKENAPAVSIDGHENVPEND  120 (224)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSSCC------------------------------CCCHHHHTCCCBCCCEEEECCTTC
T ss_pred             hhHhhhHhhcCceeecccccccCcCC------------------------------ccccccccccceeecccccccCcc
Confidence            46888887777888888888887621                              111112223335666677777778


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      ++.||++|++ +||++++.+..++|+.|.+|+|..  |.....+|||+||||++                          
T Consensus       121 ~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~--~~~~~~~Hav~iVGy~~--------------------------  171 (224)
T d1s4va_         121 ENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG--SCGTELDHGVAIVGYGT--------------------------  171 (224)
T ss_dssp             HHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC--CCCCCCCEEEEEEEEEE--------------------------
T ss_pred             HHHHHHHHhc-CCceEEEEecchhhhhccCCCccC--cccccCCcceEEEeccc--------------------------
Confidence            9999999987 788888888678899999999963  33345566666666665                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~~  233 (233)
                                                 +.++.+|||||||||++||++|||||+|+.   .|+|||+++++||+.
T Consensus       172 ---------------------------~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~  219 (224)
T d1s4va_         172 ---------------------------TIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (224)
T ss_dssp             ---------------------------CTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             ---------------------------ccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCccceeeeeec
Confidence                                       334567777888889999999999999984   478999999999973

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.2e-29  Score=207.44  Aligned_cols=97  Identities=37%  Similarity=0.760  Sum_probs=79.7

Q ss_pred             CCcHHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccc
Q psy403           79 EGDEYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGY  158 (233)
Q Consensus        79 ~~~~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~  158 (233)
                      ...++.||++|+++|||+++|.+ .++|+.|.+||+... +.....+|||+||||++ +                     
T Consensus       155 ~~~~~~ik~~l~~~gpv~~~~~~-~~~f~~y~~gi~~~~-~~~~~~~Hav~IVGyg~-~---------------------  210 (254)
T d1gmya_         155 SNSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHV-TGEMMGGHAIRILGWGV-E---------------------  210 (254)
T ss_dssp             CSCHHHHHHHHHHHCCEEEEEEE-EGGGTTCCSSEECCC-SCCEEEEEEEEEEEEEE-E---------------------
T ss_pred             ccHHHHHHHHHHHcCCEEEEEEe-echhhhccCCccccc-cccccccEEEEEEEEec-c---------------------
Confidence            35789999999999999999998 578999999998643 33344567777777765 2                     


Q ss_pred             ceeccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCCCcccccccccccc
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRENNCGVASSASFPL  232 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~~~cgi~~~~~~~~  232 (233)
                                                      ++.+|||||||||++||++|||||+|+. |.|||++++.+++
T Consensus       211 --------------------------------~g~~ywIvkNSWG~~WGd~GYf~i~~~~-n~cgi~~~~~~~~  251 (254)
T d1gmya_         211 --------------------------------NGTPYWLVANSWNTDWGDNGFFKILRGQ-DHCGIESEVVAGI  251 (254)
T ss_dssp             --------------------------------TTEEEEEEECSBCTTSTBTTEEEEECSS-CGGGTTTSCEECC
T ss_pred             --------------------------------CCceEEEEEcCCCCCcCCCceEEEEcCC-CccCcCCceEecc
Confidence                                            3456777788889999999999999997 8999999999875

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.95  E-value=3.8e-28  Score=197.05  Aligned_cols=140  Identities=32%  Similarity=0.613  Sum_probs=102.3

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|+. ++|+++|+++||....                              ...|..........+..+......+
T Consensus        69 ~~a~~~~~-~~g~~~~~~~p~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (212)
T d1khqa_          69 WSALQLVA-QYGIHYRNTYPYEGVQ------------------------------RYCRSREKGPYAAKTDGVRQVQPYN  117 (212)
T ss_dssp             HHHHHHHH-HTCBCBTTTSCCCSSC------------------------------CCCCTTTTCSCSBCCCEEEECCTTC
T ss_pred             cccccccc-cccccccccCCccccc------------------------------Ccccccccccceeeeeeeeeecccc
Confidence            57899996 5699999999998762                              1122222333345556666665545


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      ++. ++++..+|||.+++.+..+.|..|++|++..+.+  ..++|||+|||||+                          
T Consensus       118 ~~~-~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~~~--~~~~Hav~iVGyg~--------------------------  168 (212)
T d1khqa_         118 EGA-LLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCG--NKVDHAVAAVGYGP--------------------------  168 (212)
T ss_dssp             HHH-HHHHHHHSCEEEEECCCSHHHHTCCSSEECCSCC--SCCCEEEEEEEEET--------------------------
T ss_pred             HHH-HHHHHhcCCcEEEEEeecchhcccccCccccccc--cccCeEEEecccCC--------------------------
Confidence            554 5555566999999988778999999999975433  34667777777754                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecCC---CccccccccccccC
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNRE---NNCGVASSASFPLV  233 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~~---~~cgi~~~~~~~~~  233 (233)
                                                      +|||||||||++||++|||||+|+..   |+|||++++.||+.
T Consensus       169 --------------------------------~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T d1khqa_         169 --------------------------------NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             --------------------------------TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCCEEEEC
T ss_pred             --------------------------------cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEeeeecc
Confidence                                            26677777799999999999999852   57999999999973

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.95  E-value=1.5e-27  Score=193.36  Aligned_cols=137  Identities=43%  Similarity=0.819  Sum_probs=102.8

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..+++|++.+.++.++.++||...                               +..|...  .....+.+|..++..+
T Consensus        69 ~~~~~~~~~~g~~~~~~~~p~~~~-------------------------------~~~~~~~--~~~~~~~~~~~~~~~~  115 (208)
T d1o0ea_          69 VFAYQYIINNGGIDTQANYPYKAV-------------------------------QGPCQAA--SKVVSIDGYNGVPFCN  115 (208)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCCC--CCCBCCCEEEECCTTC
T ss_pred             hhhhhhhhhcCccccccCCCCccc-------------------------------CCCccCc--ccccccccccccccch
Confidence            467888877767888899999876                               3444322  2335677788887767


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      +..++.+++ .|||++++....+.|..|.+|||..+.+  ...+|||+||||++                          
T Consensus       116 ~~~~~~~~~-~~pv~~~~~~~~~~f~~~~~gi~~~~~~--~~~~Hav~iVGy~~--------------------------  166 (208)
T d1o0ea_         116 EXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGPCG--TKLNHGVTIVGYQA--------------------------  166 (208)
T ss_dssp             HHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCCCC--SCCCEEEEEEEECS--------------------------
T ss_pred             hhHHHHHhh-cCCceEEEEecchhhcccccCccccccc--ccCCcEEEEEeeec--------------------------
Confidence            776666665 4888888887788999999999974332  34577777777754                          


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC-CCcccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR-ENNCGVASSASFPL  232 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~-~~~cgi~~~~~~~~  232 (233)
                                                      +|||||||||++||++|||||+|+. .|.|||++.+.||+
T Consensus       167 --------------------------------~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         167 --------------------------------NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             --------------------------------SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             --------------------------------ceEEEECCCCCCcccCCeEEEEccCCCCccCccccceecc
Confidence                                            3666677779999999999999952 47999999999997

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.94  E-value=2.9e-27  Score=192.68  Aligned_cols=142  Identities=39%  Similarity=0.800  Sum_probs=103.1

Q ss_pred             hhHHHHHHhCCCcCCCCCCccccccCCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcceEeceEEEcCCCc
Q psy403            2 DQAFQYIKDNHGIDTESSYPYEAMMSFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGAVDRGYVDIPEGD   81 (233)
Q Consensus         2 ~~a~~y~~~~~Gi~~e~~yPY~~~~~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~i~~~~~~~~~~   81 (233)
                      ..|++|++++.++..+.++||...                               ...|.. ......++.+|..+....
T Consensus        69 ~~a~~~~~~~g~~~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~  116 (215)
T d1iwda_          69 NNAFQYIITNGGIDTQQNYPYSAV-------------------------------QGSCKP-YRLRVVSINGFQRVTRNN  116 (215)
T ss_dssp             HHHHHHHHHHTCBCBTTTSCCCSS-------------------------------CCCCCT-TCCCCBCCCEEEECCTTC
T ss_pred             hhHHHHHHhcCeeccccCCCcccc-------------------------------cccccc-cccceeEeccccccCccH
Confidence            468999987756777777787765                               222221 123346777888886655


Q ss_pred             HHHHHHHHHhcCCeEEEEeccCccccccccceEeCCCCCCCCCCeeEEEeeeeecCCCCceeEEeecCCcccccccccee
Q psy403           82 EYKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus        82 ~~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c~~~~~~Hav~ivGyg~~~~~~~ywivkNSwg~~wg~~G~~~~  161 (233)
                      ++ ++++|...+||.+++.+..+.|..|..|+|..+.+  ...+|||+||||++ +                        
T Consensus       117 ~~-~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~~~--~~~~Hav~iVGyg~-~------------------------  168 (215)
T d1iwda_         117 ES-ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCG--TAQNHGVVIVGYGT-Q------------------------  168 (215)
T ss_dssp             HH-HHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCC--CCCCEEEEEEEEEE-E------------------------
T ss_pred             HH-HHHHHHhcCCccceeeecchhhhccccCccccccc--ccccceEEEEEeec-C------------------------
Confidence            55 45555666999999998777777788899875432  34677777777776 2                        


Q ss_pred             ccCCccccCCCccccccceeEEEEeecCCCCcceEEEeccCCCCCCCCceEEEEecC---CCcccccccccccc
Q psy403          162 ARNRVYYEPECNSTQLDHAVLVVGYGTDENGNDYWLVKNSWNTTWGDEGYIKMARNR---ENNCGVASSASFPL  232 (233)
Q Consensus       162 ~r~gi~~~~~c~~~~~~haV~vVGyg~~~~~~~yWiv~nswg~~WG~~Gy~~i~r~~---~~~cgi~~~~~~~~  232 (233)
                                                   ++.+|||||||||++||++||+||+|+.   .|+|||++.++||+
T Consensus       169 -----------------------------~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         169 -----------------------------SGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             -----------------------------TTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             -----------------------------CCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccceeec
Confidence                                         3456777777779999999999999985   36799999999997

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.65  E-value=2.3e-08  Score=88.11  Aligned_cols=42  Identities=31%  Similarity=0.580  Sum_probs=37.0

Q ss_pred             ccccceeEEEEeecCCCCc--ceEEEeccCCCCCCCCceEEEEe
Q psy403          175 TQLDHAVLVVGYGTDENGN--DYWLVKNSWNTTWGDEGYIKMAR  216 (233)
Q Consensus       175 ~~~~haV~vVGyg~~~~~~--~yWiv~nswg~~WG~~Gy~~i~r  216 (233)
                      ...+||++++|+..|.+++  .+|+|+||||+++|++||+.|..
T Consensus       370 s~~tHAM~ltGv~~D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         370 SLMTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             CCCCEEEEEEEEEECTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             CCCCeeEEEEEEEEcCCCCccceEEEEeccCCCCCCCceEEecH
Confidence            4578999999999877664  69999999999999999999875

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=98.58  E-value=1.2e-08  Score=85.74  Aligned_cols=146  Identities=18%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             CCCchhhhhhhhhhhhhhcccCCccccccCCCCCcCCCCCcce-EeceE-----EEcCCCcHHHHHHHHHhcCCeEEEEe
Q psy403           27 SFLPSFLFRRLCYLLTICHKRSNQVTVTSGDDNCRYKRAKSGA-VDRGY-----VDIPEGDEYKLKAAVATIGPVSIAID  100 (233)
Q Consensus        27 ~~~p~~~~~~~c~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~-~i~~~-----~~~~~~~~~~i~~~i~~~GPv~v~~~  100 (233)
                      ...|...|||.          .+.++++++|+.|..++++... .+...     ..+...++++|.++..+.| ..-+. 
T Consensus        85 ~~~P~~~DwR~----------~g~vtpVkdQG~CGsCwAfa~~~~lE~~~~i~~~~~~~lS~q~lvdC~~~~~-C~gG~-  152 (302)
T d1xkga1          85 GNAPAEIDLRQ----------MRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQHG-CHGDT-  152 (302)
T ss_dssp             SCCCSCEETTT----------TTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTCSST-TBCCC-
T ss_pred             CCCCcceeccc----------cCccccceeccccceehhhhhHHhHHHHHHHhcCCcccchhHHHHhccccCc-cCCCc-
Confidence            34676666663          3567888999999988875442 11111     1223468888888753322 11000 


Q ss_pred             ccCcccccc-ccceEe---------CCCCCCCCCCeeEEEeeeeecCCCC----ceeEEee-cCCccc-cc--cccceec
Q psy403          101 ASHQSFQFY-SEGVYY---------EPECNSTQLDHAVLVVGYGTDENGN----DYWLVKN-SWNTTW-GD--EGYIKMA  162 (233)
Q Consensus       101 ~~~~~f~~Y-~~Giy~---------~~~c~~~~~~Hav~ivGyg~~~~~~----~ywivkN-Swg~~w-g~--~G~~~~~  162 (233)
                       ....|.+. ..||..         ...|... ....+.+.+|.......    ...+++. ..+..- +.  ...|+.+
T Consensus       153 -~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y  230 (302)
T d1xkga1         153 -IPRGIEYIQHNGVVQESYYRYVAREQSCRRP-NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHY  230 (302)
T ss_dssp             -HHHHHHHHHHHCEEBGGGSCCCSSCCCCCCC-SSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTC
T ss_pred             -cchhhhhhccCcccchhhccccccccccccc-ccccceeeeeeeecCchHHHHHHhhhhcccccceeecccccchhhcc
Confidence             01112111 123332         2345432 22344456665421111    1111111 111111 11  1236677


Q ss_pred             cCCccccCCCccccccceeEEEEe
Q psy403          163 RNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       163 r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      .+|++....|+....+|||+||||
T Consensus       231 ~~gi~~~~~~~~~~~~HaV~iVGy  254 (302)
T d1xkga1         231 DGRTIIQRDNGYQPNYHAVNIVGY  254 (302)
T ss_dssp             CSSSCBCCCCSSCCEEEEEEEEEE
T ss_pred             ccceeecCCCCCCcCCEEEEEEEE
Confidence            888888888988888999999998

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-08  Score=80.49  Aligned_cols=35  Identities=43%  Similarity=1.173  Sum_probs=29.8

Q ss_pred             CCCCceeEEeecCCccccccccceeccCCccccCCCcc
Q psy403          137 ENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNS  174 (233)
Q Consensus       137 ~~~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~  174 (233)
                      .++.+|||||||||+.||++|||++.|+.   .+.|++
T Consensus       178 ~~~~~ywivrNSWG~~WGd~Gy~~i~~~~---~n~CgI  212 (221)
T d1fh0a_         178 SDNSKYWLVKNSWGPEWGSNGYVKIAKDK---NNHCGI  212 (221)
T ss_dssp             TTSSEEEEEECSBCTTSTBTTEEEEECSS---SSGGGT
T ss_pred             CCCceEEEEEeCCCCCcccCCEEEEEeCC---CCcccc
Confidence            45789999999999999999999999875   345765

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-08  Score=85.47  Aligned_cols=36  Identities=50%  Similarity=1.153  Sum_probs=30.4

Q ss_pred             CCCCceeEEeecCCccccccccceeccCCccccCCCccc
Q psy403          137 ENGNDYWLVKNSWNTTWGDEGYIKMARNRVYYEPECNST  175 (233)
Q Consensus       137 ~~~~~ywivkNSwg~~wg~~G~~~~~r~gi~~~~~c~~~  175 (233)
                      .++.+|||||||||+.||++||||+.|+.   .+.|+++
T Consensus       273 ~~g~~YWIikNSWG~~WGe~GY~ri~r~~---~n~CGI~  308 (316)
T d1cs8a_         273 SDNNKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIA  308 (316)
T ss_dssp             SCCEEEEEEECSBCTTSTBTTEEEEECSS---SSGGGTT
T ss_pred             CCCCeEEEEEeCCCCCcccCCEEEEeeCC---CCcCccC
Confidence            44779999999999999999999999975   2458764

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.5e-08  Score=78.97  Aligned_cols=43  Identities=19%  Similarity=0.119  Sum_probs=27.9

Q ss_pred             eEEeecCCccccccc-cceeccCCccccCCCccccccceeEEEEe
Q psy403          143 WLVKNSWNTTWGDEG-YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       143 wivkNSwg~~wg~~G-~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      .|+++++...--+.. .|..|.+||+... |....++|||+||||
T Consensus       177 ~l~~~GPv~v~~~~~~~f~~y~~Gi~~~~-~~~~~~~HAV~IVGy  220 (275)
T d1deua_         177 EIYANGPISCGIMATERLANYTGGIYAEY-QDTTYINHVVSVAGW  220 (275)
T ss_dssp             HHHHHCCEEEEECCCHHHHTCCSSEECBC-CSCCCCCEEEEEEEE
T ss_pred             HHHhCCCcEEEEEeccchhccCCCcccCc-cccccCCeEEEEEEE
Confidence            345555543322222 3667888888654 555678999999998

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=98.38  E-value=1.1e-07  Score=75.52  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=18.6

Q ss_pred             ceeccCCccccCCCccccccceeEEEE
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      |..+..|++.  .|....++|||+|||
T Consensus       144 ~~~y~~g~~~--~~~~~~~~Hav~iVG  168 (224)
T d1s4va_         144 FQFYSEGVFT--GSCGTELDHGVAIVG  168 (224)
T ss_dssp             HHTCCSSEEC--CCCCCCCCEEEEEEE
T ss_pred             hhhccCCCcc--CcccccCCcceEEEe
Confidence            5667788774  344567899999987

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=75.17  Aligned_cols=29  Identities=48%  Similarity=0.909  Sum_probs=26.0

Q ss_pred             cceeccCCccccCCCccccccceeEEEEe
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      .|+.|.+|++....|+....+|||++|||
T Consensus       141 ~f~~y~~gi~~~~~~~~~~~~Hav~iVGy  169 (215)
T d2r6na1         141 SFQFYSKGVYYDESCNSDNLNHAVLAVGY  169 (215)
T ss_dssp             HHHTCCSSEECCTTCCTTCCCEEEEEEEE
T ss_pred             hhcccCCCcccCCCCCCCCCCeeEEEEEe
Confidence            47788999998888998999999999998

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=98.35  E-value=1.2e-07  Score=75.36  Aligned_cols=27  Identities=41%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             cceeccCCccccCCCccccccceeEEEEe
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      +++.+.+||+..+.+  ..++|||+||||
T Consensus       140 ~~~~y~~Giy~~~~~--~~~~Hav~IVGy  166 (218)
T d1yala_         140 PFQLYKSGVFDGPCG--TKLDHAVTAVGY  166 (218)
T ss_dssp             HHHTCCSSEECCSCC--SCCCEEEEEEEE
T ss_pred             chhhcccceeeeccc--ccCCcEEEEEEe
Confidence            467788999875544  467999999998

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-07  Score=74.28  Aligned_cols=27  Identities=52%  Similarity=1.049  Sum_probs=21.3

Q ss_pred             ceeccCCccccCCCccccccceeEEEEe
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      |..++++|+..+.+. ..++|||+||||
T Consensus       145 f~~~~~gi~~~~~~~-~~~~Hav~iVGy  171 (217)
T d2h7ja1         145 FFLYRSGVYYEPSCT-QNVNHGVLVVGY  171 (217)
T ss_dssp             HHTCCSSCBCCTTCC-SCCCEEEEEEEE
T ss_pred             hcccCCcceeCCCCC-CCCCeEEEEEec
Confidence            567788888776554 567999999998

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=98.22  E-value=3.2e-07  Score=72.52  Aligned_cols=27  Identities=33%  Similarity=0.626  Sum_probs=20.4

Q ss_pred             cceeccCCccccCCCccccccceeEEEEe
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      +++.+.+|++..+.  ...++|||+||||
T Consensus       140 ~~~~y~~g~~~~~~--~~~~~Hav~iVGy  166 (216)
T d1ppoa_         140 PFQLYKGGIFEGPC--GTKVDHAVTAVGY  166 (216)
T ss_dssp             HHHHCCSSEECCSC--CSCCCEEEEEEEE
T ss_pred             cceecCCccccccc--cccCCcEEEEEec
Confidence            46678888875443  3568999999998

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.22  E-value=5.5e-07  Score=71.11  Aligned_cols=26  Identities=46%  Similarity=0.654  Sum_probs=18.8

Q ss_pred             ceeccCCccccCCCccccccceeEEEEe
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      +..++++++.  .|....++|||+||||
T Consensus       144 ~~~~~~~~~~--~~~~~~~~Hav~IVGy  169 (215)
T d1me4a_         144 WMTYTGGVMT--SCVSEQLDHGVLLVGY  169 (215)
T ss_dssp             GGGCCSSEEC--SCCCSCCCEEEEEEEE
T ss_pred             eccccccccc--CCccccceeEEEEEEc
Confidence            4456666653  4556778999999998

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.6e-07  Score=72.18  Aligned_cols=25  Identities=40%  Similarity=0.698  Sum_probs=17.0

Q ss_pred             eccCCc--cccCCCccccccceeEEEE
Q psy403          161 MARNRV--YYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       161 ~~r~gi--~~~~~c~~~~~~haV~vVG  185 (233)
                      +++.++  +....|+....+|||+|||
T Consensus       141 ~~~~g~~~~~~~~~~~~~~~HaV~iVG  167 (214)
T d1m6da_         141 FYRHGISRPLRPLCSPWLIDHAVLLVG  167 (214)
T ss_dssp             HCCSSEECCCGGGSCTTCCCEEEEEEE
T ss_pred             hccCCccccccCCCCCcccceeEEEEc
Confidence            344444  3345566778899999998

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.7e-07  Score=73.90  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             ceeccCCccccCCCccccccceeEEEEe
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      |+.|.+|++.. .|.....+|||+||||
T Consensus       181 f~~y~~gi~~~-~~~~~~~~Hav~IVGy  207 (254)
T d1gmya_         181 FLLYKSGVYQH-VTGEMMGGHAIRILGW  207 (254)
T ss_dssp             GTTCCSSEECC-CSCCEEEEEEEEEEEE
T ss_pred             hhhccCCcccc-ccccccccEEEEEEEE
Confidence            45667777643 3555677999999998

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1e-06  Score=77.08  Aligned_cols=42  Identities=31%  Similarity=0.695  Sum_probs=36.9

Q ss_pred             ccccceeEEEEeec--CCCCc-ceEEEeccCCCCCCCCceEEEEe
Q psy403          175 TQLDHAVLVVGYGT--DENGN-DYWLVKNSWNTTWGDEGYIKMAR  216 (233)
Q Consensus       175 ~~~~haV~vVGyg~--~~~~~-~yWiv~nswg~~WG~~Gy~~i~r  216 (233)
                      ...+||++++|...  +.+|+ .+|+|+||||+.-|++||+.|..
T Consensus       367 s~~tHAM~ltGv~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         367 SLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             CCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cCCCceEEEEEEecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            45689999999986  56676 79999999999999999999875

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=98.10  E-value=8.6e-07  Score=69.87  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             cceeccCCccccCCCccccccceeEEEEe
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      .|..++++++..  +.....+|||+||||
T Consensus       140 ~~~~y~~gi~~~--~~~~~~~Hav~iVGy  166 (216)
T d1cqda_         140 DFQLYRSGIFTG--SCNISANHALTVVGY  166 (216)
T ss_dssp             HHHTCCSSEECC--CCCCCCCEEEEEEEE
T ss_pred             cccccccCcccc--cccccCCcceeeecc
Confidence            366778888753  445678999999997

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=98.00  E-value=1.6e-06  Score=68.47  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=17.1

Q ss_pred             ceeccCCccccCCCccccccceeEEEEe
Q psy403          159 IKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       159 ~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      ++.+.++++..+  ....++|||+||||
T Consensus       144 ~~~~~~g~~~~~--~~~~~~Hav~iVGy  169 (218)
T d1aeca_         144 FKQYSSGIFTGP--CGTAIDHAVTIVGY  169 (218)
T ss_dssp             HHHCCSSEECCS--CCSSCCEEEEEEEE
T ss_pred             hhcCCCCccccc--ccccCCceeEEEEE
Confidence            444555555432  33567999999998

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=97.95  E-value=2.7e-06  Score=66.50  Aligned_cols=26  Identities=31%  Similarity=0.546  Sum_probs=19.0

Q ss_pred             cceeccCCccccCCCccccccceeEEEE
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      .|..++++++..+.+  +.++|||+|||
T Consensus       140 ~f~~~~~g~~~~~~~--~~~~Hav~iVG  165 (212)
T d1khqa_         140 DFQLYRGGIFVGPCG--NKVDHAVAAVG  165 (212)
T ss_dssp             HHHTCCSSEECCSCC--SCCCEEEEEEE
T ss_pred             hhcccccCccccccc--cccCeEEEecc
Confidence            466778888764433  56899999986

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=69.80  Aligned_cols=76  Identities=24%  Similarity=0.417  Sum_probs=53.9

Q ss_pred             HHHHHHHHhcCCeEEEEeccCccccccccceEeCC----------CC-C----------CCCCCeeEEEeeeee--cCCC
Q psy403           83 YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEP----------EC-N----------STQLDHAVLVVGYGT--DENG  139 (233)
Q Consensus        83 ~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~----------~c-~----------~~~~~Hav~ivGyg~--~~~~  139 (233)
                      +.+++.|...-||-.+.+++ ..|.. +.||....          +- .          ....+|||+|+|++.  ++++
T Consensus       309 ~~~~~sL~~g~~VwfgcDV~-k~~~~-k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l~dd~~G  386 (453)
T d2cb5a_         309 KMVAASIKDGEAVWFGCDVG-KHFNS-KLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDG  386 (453)
T ss_dssp             HHHHHHHHTTCCEEEEECTT-TTEET-TTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCS
T ss_pred             HHHHHHHhcCCcEEEEcccc-hhcch-hccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEEecccccCC
Confidence            34555677888999999995 44443 45554210          11 1          124589999999975  3566


Q ss_pred             C-ceeEEeecCCccccccccce
Q psy403          140 N-DYWLVKNSWNTTWGDEGYIK  160 (233)
Q Consensus       140 ~-~ywivkNSwg~~wg~~G~~~  160 (233)
                      + .+|+|+||||+..|.+||+.
T Consensus       387 ~~~~w~VENSWG~~~g~kGy~~  408 (453)
T d2cb5a_         387 AFTKWRVENSWGEDHGHKGYLC  408 (453)
T ss_dssp             CEEEEEEECSBCTTSTBTTEEE
T ss_pred             CEeEEEEEccccCcCCCCceEE
Confidence            6 68999999999999999864

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=97.90  E-value=3.4e-06  Score=66.33  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             cceeccCCccccCCCccccccceeEEEEe
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVGY  186 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVGy  186 (233)
                      ++..+.++++..+.+  ...+|||+||||
T Consensus       139 ~~~~~~~g~~~~~~~--~~~~Hav~iVGy  165 (215)
T d1iwda_         139 PFQHYSSGIFTGPCG--TAQNHGVVIVGY  165 (215)
T ss_dssp             HHHTCCSSEECCCCC--CCCCEEEEEEEE
T ss_pred             hhhccccCccccccc--ccccceEEEEEe
Confidence            455667777754433  457999999998

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=97.87  E-value=5.4e-06  Score=72.68  Aligned_cols=77  Identities=22%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcCCeEEEEeccCccccccccceEeCCCC-------------------CCCCCCeeEEEeeeeecCCCC--c
Q psy403           83 YKLKAAVATIGPVSIAIDASHQSFQFYSEGVYYEPEC-------------------NSTQLDHAVLVVGYGTDENGN--D  141 (233)
Q Consensus        83 ~~i~~~i~~~GPv~v~~~~~~~~f~~Y~~Giy~~~~c-------------------~~~~~~Hav~ivGyg~~~~~~--~  141 (233)
                      +.+++.|...-||-.+.+++ . +...+.||.....-                   .....+|||+|+|+..++.+.  .
T Consensus       314 ~~~~~sL~~g~pVwfgcDV~-k-~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~~g~~~~  391 (458)
T d3gcba_         314 KLVVKRLQNNKAVFFGSHTP-K-FMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDETSKLPL  391 (458)
T ss_dssp             HHHHHHHHTTCCEEEEECTT-T-TEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCSEE
T ss_pred             HHHHHHHhcCCcEEEEeccc-c-cccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEEcCCCCccc
Confidence            34445577889999999995 4 44456777653210                   112468999999998755554  5


Q ss_pred             eeEEeecCCcccccccccee
Q psy403          142 YWLVKNSWNTTWGDEGYIKM  161 (233)
Q Consensus       142 ywivkNSwg~~wg~~G~~~~  161 (233)
                      +|+|+||||+.+|++||+.+
T Consensus       392 ~w~VeNSWG~~~g~~Gy~~m  411 (458)
T d3gcba_         392 RYRVENSWGKDSGKDGLYVM  411 (458)
T ss_dssp             EEEEECSBCTTSTBTTEEEE
T ss_pred             eEEEEeccCCCCCCCceEEe
Confidence            99999999999999999753

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=97.75  E-value=9.4e-06  Score=63.32  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=18.4

Q ss_pred             cceeccCCccccCCCccccccceeEEEE
Q psy403          158 YIKMARNRVYYEPECNSTQLDHAVLVVG  185 (233)
Q Consensus       158 ~~~~~r~gi~~~~~c~~~~~~haV~vVG  185 (233)
                      .|..+..|++....  ....+|||+|||
T Consensus       138 ~f~~~~~gi~~~~~--~~~~~Hav~iVG  163 (208)
T d1o0ea_         138 QFQQYSSGIFSGPC--GTKLNHGVTIVG  163 (208)
T ss_dssp             HHHTCCSSEECCCC--CSCCCEEEEEEE
T ss_pred             hhcccccCcccccc--cccCCcEEEEEe
Confidence            46667888875433  346799999985