Psyllid ID: psy4066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcc
Coil and Loop (DISEMBL)
mlgsrlakTVRCFStsaarashaysgpgqnlpfdthnrYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Flexible Loop (DISEMBL)
MLGSRLAKTVRCFStsaarashaysgpgqnlpfdTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Low Complexity Region (SEG)
MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Disordered region (IsUnstruct)
*****************************NLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQL*****
Disordered Region (DISOPRED)
*******KTVRCFSTSAARAS*AYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK***
Disordered Region (DISEMBL)
********TVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Disordered Region (DISPRO)
MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
P80432	63	Cytochrome c oxidase subu	yes	N/A	0.898	0.984	0.467	2e-11
P00430	63	Cytochrome c oxidase subu	yes	N/A	0.884	0.968	0.475	3e-11
Q1W0Y2	63	Cytochrome c oxidase subu	yes	N/A	0.826	0.904	0.507	3e-11
Q53CG2	63	Cytochrome c oxidase subu	N/A	N/A	0.898	0.984	0.483	4e-11
Q8SPI1	63	Cytochrome c oxidase subu	N/A	N/A	0.898	0.984	0.483	4e-11
P17665	63	Cytochrome c oxidase subu	yes	N/A	0.826	0.904	0.492	7e-11
Q7YRK5	63	Cytochrome c oxidase subu	N/A	N/A	0.840	0.920	0.5	9e-11
Q53CF9	63	Cytochrome c oxidase subu	N/A	N/A	0.884	0.968	0.459	1e-10
P60025	63	Cytochrome c oxidase subu	yes	N/A	0.898	0.984	0.451	2e-10
P61639	63	Cytochrome c oxidase subu	N/A	N/A	0.898	0.984	0.451	2e-10

>sp|P80432|COX7C_RAT Cytochrome c oxidase subunit 7C, mitochondrial OS=Rattus norvegicus GN=Cox7c PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+NLPF   N+++L L   ++  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLLMMTVYFGSGFAAPFFIVRHQLL 61

Query: 66 KS 67
          K 
Sbjct: 62 KK 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Rattus norvegicus (taxid: 10116)

>sp|P00430|COX7C_BOVIN Cytochrome c oxidase subunit 7C, mitochondrial OS=Bos taurus GN=COX7C PE=1 SV=3

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|Q1W0Y2|COX7C_PIG Cytochrome c oxidase subunit 7C, mitochondrial OS=Sus scrofa GN=COX7C PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 8/65 (12%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKL----TLYFGLFMMTGFGVPFIAVR 61
          L +++R F+TS  R SH   GPG+NLPF   N+++L    TLYFG    +GF  PF  VR
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTLYFG----SGFAAPFFIVR 57

Query: 62 HQLLK 66
          HQLLK
Sbjct: 58 HQLLK 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Sus scrofa (taxid: 9823)

>sp|Q53CG2|COX7C_MACSL Cytochrome c oxidase subunit 7C, mitochondrial OS=Macaca silenus GN=COX7C PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L  ++R F+TS  R SH   GPG+NLPF   N++ L +   LF  + F VPF+ VRHQLL
Sbjct: 2  LGHSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWTLLVKMCLFFGSAFSVPFLIVRHQLL 61

Query: 66 KS 67
          K 
Sbjct: 62 KQ 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Macaca silenus (taxid: 54601)

>sp|Q8SPI1|COX7C_MACFA Cytochrome c oxidase subunit 7C, mitochondrial OS=Macaca fascicularis GN=COX7C PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L  ++R F+TS  R SH   GPG+NLPF   N++ L +   LF  + F VPF+ VRHQLL
Sbjct: 2  LGHSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWTLLVKMCLFFGSAFSVPFLIVRHQLL 61

Query: 66 KS 67
          K 
Sbjct: 62 KQ 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Macaca fascicularis (taxid: 9541)

>sp|P17665|COX7C_MOUSE Cytochrome c oxidase subunit 7C, mitochondrial OS=Mus musculus GN=Cox7c PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 8/65 (12%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKL----TLYFGLFMMTGFGVPFIAVR 61
          L +++R F+TS  R SH   GPG+NLPF   N+++L    T+YFG    +GF  PF  VR
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTVYFG----SGFAAPFFIVR 57

Query: 62 HQLLK 66
          HQLLK
Sbjct: 58 HQLLK 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|Q7YRK5|COX7C_TARSY Cytochrome c oxidase subunit 7C, mitochondrial OS=Tarsius syrichta GN=COX7C PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query: 10 VRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS 67
          VR F+TS  R SH   GPG+NLPF   N+++L     L++ +GF  PF  VRHQLLK 
Sbjct: 6  VRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTLYLGSGFAAPFFIVRHQLLKK 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Tarsius syrichta (taxid: 9478)

>sp|Q53CF9|COX7C_SAISC Cytochrome c oxidase subunit 7C, mitochondrial OS=Saimiri sciureus GN=COX7C PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TSA R SH   GPG+NLPF   N+++L     L+  + F  PF+ +RHQLL
Sbjct: 2  LGQSIRRFTTSAVRRSHYEEGPGKNLPFSVENKWRLLAMMCLYFGSAFATPFLILRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Saimiri sciureus (taxid: 9521)

>sp|P60025|COX7C_PANTR Cytochrome c oxidase subunit 7C, mitochondrial OS=Pan troglodytes GN=COX7C PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+NLPF   N++ L     L+  + F  PF+ VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61

Query: 66 KS 67
          K+
Sbjct: 62 KT 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pan troglodytes (taxid: 9598)

>sp|P61639|COX7C_PANPA Cytochrome c oxidase subunit 7C, mitochondrial OS=Pan paniscus GN=COX7C PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+NLPF   N++ L     L+  + F  PF+ VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61

Query: 66 KS 67
          K+
Sbjct: 62 KT 63

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pan paniscus (taxid: 9597)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
328707872	68	PREDICTED: cytochrome c oxidase subunit	0.898	0.911	0.516	8e-12
392874768	67	cytochrome c oxidase subunit VIIc [Callo	0.956	0.985	0.515	1e-11
254281286	68	cytochrome c oxidase subunit VIIc [Acyrt	0.884	0.897	0.540	2e-11
308322341	63	mitochondrial cytochrome c oxidase subun	0.884	0.968	0.573	2e-11
308323237	63	mitochondrial cytochrome c oxidase subun	0.884	0.968	0.573	3e-11
387914486	67	cytochrome c oxidase subunit VIIc [Callo	0.956	0.985	0.5	5e-11
260908356	73	cytochrome oxidase subunit VIIc [Rhipice	0.913	0.863	0.588	6e-11
209730518	63	Cytochrome c oxidase subunit 7C, mitocho	0.884	0.968	0.540	7e-11
229367252	63	Cytochrome c oxidase subunit 7C, mitocho	0.884	0.968	0.540	8e-11
51011612	73	cytochrome oxidase subunit VIIc [Ixodes	0.927	0.876	0.565	1e-10

>gi|328707872|ref|XP_003243529.1| PREDICTED: cytochrome c oxidase subunit 7C, mitochondrial-like [Acyrthosiphon pisum]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query: 1  MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
          M GS+  + +R FST+  R  HAY GPG NLPFD  ++YK T Y  +F  TGFG+PF+ V
Sbjct: 1  MFGSKAVQALRQFSTTTVRRGHAYEGPGHNLPFDVFSKYKFTFYTAVFFSTGFGLPFLMV 60

Query: 61 RH 62
          R+
Sbjct: 61 RY 62

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392874768|gb|AFM86216.1| cytochrome c oxidase subunit VIIc [Callorhinchus milii]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query: 1  MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
          M G+R+A+ +R FSTSA    H   GPG+NLPF   N++KL     +F  +GF VPF+ V
Sbjct: 1  MWGARVAQGLRSFSTSAVVRGHYTEGPGKNLPFSVENKWKLLGMMVIFFGSGFAVPFVLV 60

Query: 61 RHQLLK 66
          RHQLLK
Sbjct: 61 RHQLLK 66

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|254281286|ref|NP_001156834.1| cytochrome c oxidase subunit VIIc [Acyrthosiphon pisum]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 44/61 (72%)

Query: 1  MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
          M+ SR  + +R FST+AAR SHAY GPG NLPFD +++YK T    ++  TGFG+PF+ V
Sbjct: 1  MIASRGLQLMRNFSTTAARNSHAYGGPGSNLPFDVNSKYKFTALLAIYFSTGFGLPFLMV 60

Query: 61 R 61
          R
Sbjct: 61 R 61

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308322341|gb|ADO28308.1| mitochondrial cytochrome c oxidase subunit 7c [Ictalurus furcatus]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L + VR F+TSA RASH   GPGQNLPF   N++KL     LF  +GF  PFI VRHQ+L
Sbjct: 2  LGQAVRRFTTSAVRASHYAEGPGQNLPFSVENKWKLLGMMVLFFDSGFTFPFIIVRHQIL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

Source: Ictalurus furcatus

Species: Ictalurus furcatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|308323237|gb|ADO28755.1| mitochondrial cytochrome c oxidase subunit 7c [Ictalurus punctatus]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L + VR F+TSA RASH   GPGQNLPF   N++KL     LF  +GF  PFI VRHQ+L
Sbjct: 2  LGQAVRRFTTSAVRASHYAEGPGQNLPFSVENKWKLLGMMVLFFGSGFTFPFIIVRHQIL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387914486|gb|AFK10852.1| cytochrome c oxidase subunit VIIc [Callorhinchus milii] gi|392874110|gb|AFM85887.1| cytochrome c oxidase subunit VIIc [Callorhinchus milii] gi|392874246|gb|AFM85955.1| cytochrome c oxidase subunit VIIc [Callorhinchus milii] gi|392876864|gb|AFM87264.1| cytochrome c oxidase subunit VIIc [Callorhinchus milii]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%)

Query: 1  MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
          M G+R+A+ +R FSTSA    H   GPG+NLPF   N++KL     +F  +GF  PF+ V
Sbjct: 1  MWGARVAQGLRSFSTSAVVRGHYAEGPGKNLPFSVENKWKLLGMMVIFFGSGFAAPFVLV 60

Query: 61 RHQLLK 66
          RHQLLK
Sbjct: 61 RHQLLK 66

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260908356|gb|ACX53899.1| cytochrome oxidase subunit VIIc [Rhipicephalus sanguineus] gi|427785893|gb|JAA58398.1| Putative cytochrome oxidase subunit viic [Rhipicephalus pulchellus]

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 4  SRLAKTVRCFSTSAARAS----HAYSG-PGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFI 58
          SRLA   R F+TSA R S    H  SG PG NLPF  +N+Y LT+ F LF  +GF VPF 
Sbjct: 5  SRLAVVARNFTTSAIRRSGHDDHDTSGIPGSNLPFKINNKYGLTIKFALFFGSGFAVPFF 64

Query: 59 AVRHQLLK 66
          AVRHQLLK
Sbjct: 65 AVRHQLLK 72

Source: Rhipicephalus sanguineus

Species: Rhipicephalus sanguineus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209730518|gb|ACI66128.1| Cytochrome c oxidase subunit 7C, mitochondrial precursor [Salmo salar]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L + VR F+TSA R+SH   GPGQNLPF   N+++L     +F  +GF  PFI VRHQLL
Sbjct: 2  LGQVVRRFTTSAVRSSHYGEGPGQNLPFSVDNKWRLLAMMVVFFGSGFAFPFIVVRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|229367252|gb|ACQ58606.1| Cytochrome c oxidase subunit 7C, mitochondrial precursor [Anoplopoma fimbria]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L + VR F+TSA R+SH   GPGQNLPF   N+++L     LF  +GF  PFI VRHQ+L
Sbjct: 2  LGQAVRRFTTSAIRSSHYSEGPGQNLPFSVENKWRLLGMMVLFFGSGFAFPFIVVRHQIL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

Source: Anoplopoma fimbria

Species: Anoplopoma fimbria

Genus: Anoplopoma

Family: Anoplopomatidae

Order: Scorpaeniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|51011612|gb|AAT92215.1| cytochrome oxidase subunit VIIc [Ixodes pacificus]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 4  SRLAKTVRCFSTSAARAS----HAYSG-PGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFI 58
          +RLA + R F+TSA R S    H   G PG NLPF  +NR+ LT+ F LF  TGFG+PF 
Sbjct: 5  TRLAVSARNFTTSAIRRSGHDHHDEGGIPGSNLPFKINNRFGLTIKFALFFGTGFGLPFF 64

Query: 59 AVRHQLLKS 67
          AVRHQLLK 
Sbjct: 65 AVRHQLLKQ 73

Source: Ixodes pacificus

Species: Ixodes pacificus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
ZFIN|ZDB-GENE-030131-8062	63	cox7c "cytochrome c oxidase, s	0.884	0.968	0.524	3.1e-12
UNIPROTKB|E1BZL1	62	COX7C "Uncharacterized protein	0.884	0.983	0.524	8.2e-12
RGD|2300145	63	Cox7c "cytochrome c oxidase, s	0.884	0.968	0.475	1e-11
UNIPROTKB|P00430	63	COX7C "Cytochrome c oxidase su	0.884	0.968	0.475	1.3e-11
UNIPROTKB|Q1W0Y2	63	COX7C "Cytochrome c oxidase su	0.884	0.968	0.475	1.7e-11
MGI|MGI:103226	63	Cox7c "cytochrome c oxidase su	0.884	0.968	0.459	3.5e-11
UNIPROTKB|P15954	63	COX7C "Cytochrome c oxidase su	0.898	0.984	0.451	7.4e-11
UNIPROTKB|I3LC57	63	LOC100627398 "Uncharacterized	0.884	0.968	0.475	1.5e-10
FB|FBgn0040773	66	CoVIIc "Cytochrome c oxidase s	0.942	0.984	0.484	8.4e-10
UNIPROTKB|D6R9Z7	56	COX7C "Cytochrome c oxidase su	0.797	0.982	0.381	2.3e-07

ZFIN|ZDB-GENE-030131-8062 cox7c "cytochrome c oxidase, subunit VIIc" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/61 (52%), Positives = 41/61 (67%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L + VR F+TSA R+SH   GPG+NLPF   N+++L     LF  +GF  PFI VRHQ+L
Sbjct:     2 LGQAVRRFATSAVRSSHYAEGPGKNLPFSVENKWRLLGMMVLFFGSGFAFPFIVVRHQIL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|E1BZL1 COX7C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             LA +VR F+TSA R SH   GPG+NLPF   N+++L      F  +GF  PF  VRHQLL
Sbjct:     2 LAASVRRFTTSALRRSHYEDGPGKNLPFSVENKWRLLAMMCAFFGSGFAAPFFIVRHQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

RGD|2300145 Cox7c "cytochrome c oxidase, subunit VIIc" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TS  R SH   GPG+NLPF   N+++L L   ++  +GF  PF  VRHQLL
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLLMMTVYFGSGFAAPFFIVRHQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P00430 COX7C "Cytochrome c oxidase subunit 7C, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|Q1W0Y2 COX7C "Cytochrome c oxidase subunit 7C, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TS  R SH   GPG+NLPF   N+++L     L+  +GF  PF  VRHQLL
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTLYFGSGFAAPFFIVRHQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

MGI|MGI:103226 Cox7c "cytochrome c oxidase subunit VIIc" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TS  R SH   GPG+NLPF   N+++L     ++  +GF  PF  VRHQLL
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P15954 COX7C "Cytochrome c oxidase subunit 7C, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TS  R SH   GPG+NLPF   N++ L     L+  + F  PF+ VRHQLL
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLL 61

Query:    66 KS 67
             K+
Sbjct:    62 KT 63

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|I3LC57 LOC100627398 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
             L +++R F+TSA R +H   GPG+NLPF   N+++L     L   +GF VPF  VR+QLL
Sbjct:     2 LGQSIRRFTTSAVRRNHYEEGPGKNLPFSVENKWQLLSMMTLNFGSGFAVPFFIVRYQLL 61

Query:    66 K 66
             K
Sbjct:    62 K 62

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

FB|FBgn0040773 CoVIIc "Cytochrome c oxidase subunit VIIc" [Drosophila melanogaster (taxid:7227)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 32/66 (48%), Positives = 40/66 (60%)

Query:     1 MLGSRLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
             MLG R +   R FS S  R S     PG+NLPF   N+Y++T  F +  + GFG PF+ V
Sbjct:     1 MLG-RSSVIARNFSQSMVRFSGHGGVPGENLPFGLTNKYRITALFTIGCVLGFGSPFLIV 59

Query:    61 RHQLLK 66
             RHQLLK
Sbjct:    60 RHQLLK 65

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=NAS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

UNIPROTKB|D6R9Z7 COX7C "Cytochrome c oxidase subunit 7C, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query:     6 LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAV 60
             L +++R F+TS  R SH   GPG+NLPF   N++ L     L+  + F  PF+ +
Sbjct:     2 LGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVI 56

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00430	COX7C_BOVIN	No assigned EC number	0.4754	0.8840	0.9682	yes	N/A
Q1W0Y2	COX7C_PIG	No assigned EC number	0.5076	0.8260	0.9047	yes	N/A
P17665	COX7C_MOUSE	No assigned EC number	0.4923	0.8260	0.9047	yes	N/A
P80432	COX7C_RAT	No assigned EC number	0.4677	0.8985	0.9841	yes	N/A
P60025	COX7C_PANTR	No assigned EC number	0.4516	0.8985	0.9841	yes	N/A
P15954	COX7C_HUMAN	No assigned EC number	0.4516	0.8985	0.9841	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
pfam02935	67	pfam02935, COX7C, Cytochrome c oxidase subunit VII	3e-16
cd00929	46	cd00929, Cyt_c_Oxidase_VIIc, Cytochrome c oxidase	2e-14

>gnl|CDD|190481 pfam02935, COX7C, Cytochrome c oxidase subunit VIIc

 Score = 65.1 bits (159), Expect = 3e-16
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 9  TVRCFSTSAARASHAY--SGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          T R  +TSA R SH++   GPG N+PF   N+Y+L      F  +GF  PF+ VRHQLLK
Sbjct: 7  TARRSTTSAVRFSHSHFKEGPGSNIPFSVTNKYRLAAMMTGFFGSGFAAPFVIVRHQLLK 66

Query: 67 S 67
           
Sbjct: 67 K 67

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIIc. The yeast member of this family is called COX VIII. Length = 67

>gnl|CDD|238469 cd00929, Cyt_c_Oxidase_VIIc, Cytochrome c oxidase subunit VIIc

 Score = 60.0 bits (146), Expect = 2e-14
 Identities = 27/46 (58%), Positives = 31/46 (67%)

Query: 21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          SH   GPG NLPF   N+++LT  F LF  +GF  PFI VRHQLLK
Sbjct: 1  SHYGEGPGSNLPFSVTNKWRLTALFHLFFGSGFSAPFIVVRHQLLK 46

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF02935	65	COX7C: Cytochrome c oxidase subunit VIIc; InterPro	99.97
cd00929	46	Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VI	99.95
KOG4527|consensus	76		99.92

>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1

Probab=99.97  E-value=2e-31  Score=160.34  Aligned_cols=62  Identities=45%  Similarity=0.709  Sum_probs=39.5

Q ss_pred             hhhh-hhhhchhhhhhcc-CCCCCCCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q psy4066           6 LAKT-VRCFSTSAARASH-AYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS   67 (69)
Q Consensus         6 l~~~-~R~f~ts~~r~sh-~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   67 (69)
                      +.|+ +|++.++.+|.+| ++||||+|||||++||+.++++||+|||+||++||+|++|||+|+
T Consensus         2 ~~r~~~rr~~~~~~R~~~~~~~gp~~NLPF~~~nK~~~~~~~~~f~g~GF~~PF~~~~~Ql~Ks   65 (65)
T PF02935_consen    2 LSRQAARRFFTSAVRSSHSYPEGPYSNLPFNVKNKWPFAVKFWGFFGSGFAAPFLIVRWQLKKS   65 (65)
T ss_dssp             -------------------S--STTTSSSS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             chhHHHHHHHHHHHHccCCCCCCCCCcccccCcchhHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            4444 7888888899988 999999999999999999999999999999999999999999996

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....

>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc

Probab=99.95  E-value=3.9e-28  Score=138.50  Aligned_cols=46  Identities=59%  Similarity=1.024  Sum_probs=44.7

Q ss_pred             ccCCCCCCCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q psy4066          21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK   66 (69)
Q Consensus        21 sh~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K   66 (69)
                      ||++||||+||||+++||++++++|++|||+||++||+|++|||+|
T Consensus         1 ~h~~egp~sNLPF~~~nk~~~~~~~~~ffg~GF~~PF~i~~~Ql~K   46 (46)
T cd00929           1 SHYGEGPGSNLPFSVTNKWRLTALFHLFFGSGFSAPFIVVRHQLLK   46 (46)
T ss_pred             CCCCCCCCCCCCcccCccchHHHHHHHHHHHHHhhhHHHHHHHhhC
Confidence            5999999999999999999999999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.

>KOG4527|consensus

Probab=99.92  E-value=2.2e-26  Score=142.35  Aligned_cols=68  Identities=43%  Similarity=0.627  Sum_probs=64.2

Q ss_pred             Ccc-hhhhhhhhhhchhhhhhccCCCCC------CCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcC
Q psy4066           1 MLG-SRLAKTVRCFSTSAARASHAYSGP------GQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKSR   68 (69)
Q Consensus         1 ~~~-~~l~~~~R~f~ts~~r~sh~~eGp------~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~~   68 (69)
                      |+- .||.+++|+++++.+|.+|++++|      |.||||+++|||.+++++++||++||++||++|+|||+|++
T Consensus         1 m~~~~ml~~~a~r~s~~mvR~~h~~~sp~~~~~~geNLPF~vtnKw~~aak~~~ffaigFa~PFlvv~~QL~K~~   75 (76)
T KOG4527|consen    1 MLCQQMLRTTAKRSSNIMVRPSHMKRSPHFKDGVGENLPFKVTNKWTYAAKHFGFFAIGFAVPFLVVRHQLLKSG   75 (76)
T ss_pred             ChHHHHHHHHHhhhhhhheecccccCCCCcccccCCCCCeEeechHHHHHHHHHHHHHhccCcceeehhhhhhcc
Confidence            444 688999999999999999999999      99999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
2y69_L	63	Bovine Heart Cytochrome C Oxidase Re-Refined With M		2e-12
1occ_L	47	Structure Of Bovine Heart Cytochrome C Oxidase At T		2e-08

>pdb|2Y69|L Chain L, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 63

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61
Query: 66 K 66
          K
Sbjct: 62 K 62

>pdb|1OCC|L Chain L, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 47

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS 67
          SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK 
Sbjct: 1  SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK 47
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2y69_L	63	Cytochrome C oxidase subunit 7C; electron transpor	6e-22
1v54_L	47	VIIIA, cytochrome C oxidase polypeptide VIIC; oxid	8e-17

>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 63

 Score = 79.1 bits (195), Expect = 6e-22
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 6  LAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLL 65
          L +++R F+TS  R SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLL
Sbjct: 2  LGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 61

Query: 66 K 66
          K
Sbjct: 62 K 62

>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ... Length = 47

 Score = 65.6 bits (160), Expect = 8e-17
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          SH   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK
Sbjct: 1  SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLK 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
2y69_L	63	Cytochrome C oxidase subunit 7C; electron transpor	100.0
1v54_L	47	VIIIA, cytochrome C oxidase polypeptide VIIC; oxid	99.95

>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=1.3e-35  Score=177.61  Aligned_cols=63  Identities=46%  Similarity=0.844  Sum_probs=45.0

Q ss_pred             hhhhhhhhhchhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q psy4066           5 RLAKTVRCFSTSAARASHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS   67 (69)
Q Consensus         5 ~l~~~~R~f~ts~~r~sh~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   67 (69)
                      ||++++|+|+||++|++||+||||+||||+++||++++++||+||++||++||+|++|||+|+
T Consensus         1 ~l~~s~R~f~ts~~r~sh~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   63 (63)
T 2y69_L            1 MLGQSIRRFTTSVVRRSHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK   63 (63)
T ss_dssp             -----------------CCCCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHhhccHHHhcCCCCCCCCcCCcCCcchhHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            567889999999999999999999999999999999999999999999999999999999994

>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...

Probab=99.95  E-value=1.3e-28  Score=140.11  Aligned_cols=47  Identities=49%  Similarity=0.926  Sum_probs=44.9

Q ss_pred             ccCCCCCCCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q psy4066          21 SHAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS   67 (69)
Q Consensus        21 sh~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   67 (69)
                      +|++||||+||||+++||+++++++|+||++||++||+|++|||+|+
T Consensus         1 ~H~~egp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   47 (47)
T 1v54_L            1 SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK   47 (47)
T ss_dssp             -CCCCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcCCcCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            59999999999999999999999999999999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d1v54l_	46	f.23.6.1 (L:) Mitochondrial cytochrome c oxidase s	2e-16

>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]} Length = 46

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
family: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
domain: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (154), Expect = 2e-16
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 22 HAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLK 66
          H   GPG+N+PF   N+++L     LF  +GF  PF  VRHQLLK
Sbjct: 1  HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1v54l_	46	Mitochondrial cytochrome c oxidase subunit VIIc (a	99.95

>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
family: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
domain: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.5e-28  Score=137.76  Aligned_cols=46  Identities=48%  Similarity=0.930  Sum_probs=45.2

Q ss_pred             cCCCCCCCCCcccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q psy4066          22 HAYSGPGQNLPFDTHNRYKLTLYFGLFMMTGFGVPFIAVRHQLLKS   67 (69)
Q Consensus        22 h~~eGp~sNLPF~~~nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   67 (69)
                      ||+||||+||||+++|||+++++|.+|||+||++||+|+||||+|+
T Consensus         1 Hy~eGPG~NLPFsv~Nk~rLla~m~~~fGsgfa~PF~ivRhqLlKk   46 (46)
T d1v54l_           1 HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK   46 (46)
T ss_dssp             CCCCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCccchhHHHHHHHHHHHHhccccchHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999996