Psyllid ID: psy4079

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MDLDTVHSRETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMFPHPSHHVL
ccccccccccEEEEEEcccccccccccccEEEEEEEEcccccccccccEEEEEccccccHHccccccccccccHHHHHHcccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccccccccccEEEEEEEcHEHcccccHHEEEEEEEEEccccccccccEEEEEEccccccEEEccccccccccccEEEEEEccccccEEEccccccccccccEEEEEcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHcccHHcccccccccEEcc
mdldtvhsretcfiyqctaqfcgnssfMKRVSLVCIVgskcagnwpkqAIVFLNlpvesrvvgcpsksagnwpkqAIVFLNlpvesrvvgcpsksagnwpkqAIVFLNLPVDSGVVVnaldfgsggwwfesnycQGTGMIAASLLLLMEEEEAFWTLSAIVEDllpasyytpnligiQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVymetnmfphpshhvl
mdldtvhsretcfiyqctAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNmfphpshhvl
MDLDTVHSRETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASllllmeeeeAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMFPHPSHHVL
********RETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLL*******FWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMF********
******HSRETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVV**************IVFLNLPVES***GCPSKSAGNWPKQAI************VNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYME************
********RETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMFPHPSHHVL
****TVHSRETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMFPHPSH***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MDLDTVHSRETCFIYQCTAQFCGNSSFMKRVSLVCIVGSKCAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVESRVVGCPSKSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWFESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYMETNMFPHPSHHVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q6P6R7 749 Small G protein signaling yes N/A 0.465 0.182 0.620 2e-44
Q8VCZ6 750 Small G protein signaling yes N/A 0.465 0.182 0.620 2e-44
Q96HU1 749 Small G protein signaling yes N/A 0.465 0.182 0.627 8e-44
Q2KI13 747 Small G protein signaling yes N/A 0.465 0.183 0.605 1e-43
A6H8I2 753 Small G protein signaling N/A N/A 0.479 0.187 0.598 3e-43
Q7T2D0 755 Small G protein signaling yes N/A 0.414 0.161 0.663 8e-43
B1AVH7922 TBC1 domain family member no N/A 0.527 0.168 0.402 2e-27
B5DFA1924 TBC1 domain family member no N/A 0.527 0.167 0.396 1e-26
Q9BYX2928 TBC1 domain family member no N/A 0.455 0.144 0.437 1e-26
A6QP29925 TBC1 domain family member no N/A 0.455 0.144 0.422 8e-25
>sp|Q6P6R7|SGSM3_RAT Small G protein signaling modulator 3 OS=Rattus norvegicus GN=Sgsm3 PE=1 SV=1 Back     alignment and function desciption
 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/137 (62%), Positives = 108/137 (78%)

Query: 130 ESNYCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVA 189
           E  YCQGTGM+AA LLL +EEE+AFW + AI+EDLLPASY++  L+G+Q DQ+VLR L+ 
Sbjct: 196 EIGYCQGTGMVAACLLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIV 255

Query: 190 SGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGM 249
             LP+L+  L +HDIELSLITLHWFLT FASVVH ++LLRIWDL F +GS+VLFQ TLGM
Sbjct: 256 QYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGM 315

Query: 250 LKIKDTIYIVLSSPIAI 266
           L++K+   I   +  +I
Sbjct: 316 LRLKEEELIQSENSASI 332
May play a cooperative role in NF2-mediated growth suppression of cells. May act as a modulator of small G protein RAB- and RAP-mediated neuronal signal transduction and vesicular transportation pathways.
Rattus norvegicus (taxid: 10116)
>sp|Q8VCZ6|SGSM3_MOUSE Small G protein signaling modulator 3 OS=Mus musculus GN=Sgsm3 PE=1 SV=1 Back     alignment and function description
>sp|Q96HU1|SGSM3_HUMAN Small G protein signaling modulator 3 OS=Homo sapiens GN=SGSM3 PE=1 SV=1 Back     alignment and function description
>sp|Q2KI13|SGSM3_BOVIN Small G protein signaling modulator 3 OS=Bos taurus GN=SGSM3 PE=2 SV=1 Back     alignment and function description
>sp|A6H8I2|SGSM3_XENLA Small G protein signaling modulator 3 homolog OS=Xenopus laevis GN=sgsm3 PE=2 SV=1 Back     alignment and function description
>sp|Q7T2D0|SGSM3_DANRE Small G protein signaling modulator 3 OS=Danio rerio GN=sgsm3 PE=2 SV=1 Back     alignment and function description
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3 Back     alignment and function description
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
242003052 799 run and tbc1 domain-containing protein, 0.414 0.152 0.745 1e-46
260801607 834 hypothetical protein BRAFLDRAFT_117535 [ 0.455 0.160 0.679 3e-45
405967243 803 Small G protein signaling modulator 3-li 0.455 0.166 0.664 6e-45
443731834 781 hypothetical protein CAPTEDRAFT_177453 [ 0.455 0.171 0.656 2e-44
444723821 1341 Small G protein signaling modulator 3 [T 0.459 0.100 0.638 1e-43
332023306 794 Small G protein signaling modulator 3-li 0.418 0.154 0.772 3e-43
240952214 752 RAB GTPase-activating protein, putative 0.418 0.163 0.699 5e-43
351699316 748 Small G protein signaling modulator 3, p 0.465 0.183 0.627 6e-43
195444926 810 GK11863 [Drosophila willistoni] gi|19416 0.438 0.159 0.669 9e-43
354490740 751 PREDICTED: small G protein signaling mod 0.465 0.182 0.620 1e-42
>gi|242003052|ref|XP_002422592.1| run and tbc1 domain-containing protein, putative [Pediculus humanus corporis] gi|212505393|gb|EEB09854.1| run and tbc1 domain-containing protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 110/122 (90%)

Query: 133 YCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGL 192
           YCQGTG+IAASLLL++EEE+AFW ++ IVEDLLPASYY+  L+GIQADQKVL SL+++ L
Sbjct: 248 YCQGTGVIAASLLLIVEEEDAFWLMATIVEDLLPASYYSSTLLGIQADQKVLISLISNYL 307

Query: 193 PQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKI 252
           P L++ L +HDIELSLITLHWFLTLFASV+H KILLRIWDL F DGS++LFQITLGMLK+
Sbjct: 308 PDLDVKLKEHDIELSLITLHWFLTLFASVIHIKILLRIWDLFFFDGSIILFQITLGMLKL 367

Query: 253 KD 254
           K+
Sbjct: 368 KE 369

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|260801607|ref|XP_002595687.1| hypothetical protein BRAFLDRAFT_117535 [Branchiostoma floridae] gi|229280934|gb|EEN51699.1| hypothetical protein BRAFLDRAFT_117535 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|405967243|gb|EKC32427.1| Small G protein signaling modulator 3-like protein [Crassostrea gigas] Back     alignment and taxonomy information
>gi|443731834|gb|ELU16805.1| hypothetical protein CAPTEDRAFT_177453 [Capitella teleta] Back     alignment and taxonomy information
>gi|444723821|gb|ELW64451.1| Small G protein signaling modulator 3 [Tupaia chinensis] Back     alignment and taxonomy information
>gi|332023306|gb|EGI63560.1| Small G protein signaling modulator 3-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|240952214|ref|XP_002399358.1| RAB GTPase-activating protein, putative [Ixodes scapularis] gi|215490564|gb|EEC00207.1| RAB GTPase-activating protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|351699316|gb|EHB02235.1| Small G protein signaling modulator 3, partial [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|195444926|ref|XP_002070092.1| GK11863 [Drosophila willistoni] gi|194166177|gb|EDW81078.1| GK11863 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|354490740|ref|XP_003507514.1| PREDICTED: small G protein signaling modulator 3 [Cricetulus griseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
UNIPROTKB|B4DMS2 596 SGSM3 "cDNA FLJ53139, highly s 0.435 0.214 0.612 1e-38
UNIPROTKB|B0QY80253 SGSM3 "Small G protein-signali 0.431 0.501 0.617 1.6e-38
RGD|735113 749 Sgsm3 "small G protein signali 0.435 0.170 0.604 2e-38
UNIPROTKB|Q6P6R7 749 Sgsm3 "Small G protein signali 0.435 0.170 0.604 2e-38
MGI|MGI:1916329 750 Sgsm3 "small G protein signali 0.435 0.170 0.604 2.1e-38
UNIPROTKB|E1BR02 753 SGSM3 "Uncharacterized protein 0.435 0.169 0.604 2.1e-38
UNIPROTKB|Q2KI13 747 SGSM3 "Small G protein signali 0.435 0.171 0.596 3.3e-38
UNIPROTKB|F1PTE5 751 SGSM3 "Uncharacterized protein 0.435 0.170 0.596 4.4e-38
UNIPROTKB|Q96HU1 749 SGSM3 "Small G protein signali 0.435 0.170 0.612 5.6e-38
FB|FBgn0038304 804 CG12241 [Drosophila melanogast 0.435 0.159 0.612 5.6e-38
UNIPROTKB|B4DMS2 SGSM3 "cDNA FLJ53139, highly similar to Homo sapiens RUN and TBC1 domain containing 3 (RUTBC3), mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 414 (150.8 bits), Expect = 1.0e-38, P = 1.0e-38
 Identities = 79/129 (61%), Positives = 97/129 (75%)

Query:   127 WWF-ESNYCQGTGMIAASXXXXXXXXXAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLR 185
             W + E  YCQGTGM+AA          AFW +SAI+EDLLPASY++  L+G+Q DQ+VLR
Sbjct:   126 WLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMSAIIEDLLPASYFSTTLLGVQTDQRVLR 185

Query:   186 SLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQI 245
              L+   LP+L+  L +HDIELSLITLHWFLT FASVV  K+LLRIWDL F +GS VLFQ+
Sbjct:   186 HLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVDIKLLLRIWDLFFYEGSRVLFQL 245

Query:   246 TLGMLKIKD 254
             TLGML +K+
Sbjct:   246 TLGMLHLKE 254
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
UNIPROTKB|B0QY80 SGSM3 "Small G protein-signaling modulator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|735113 Sgsm3 "small G protein signaling modulator 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6R7 Sgsm3 "Small G protein signaling modulator 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1916329 Sgsm3 "small G protein signaling modulator 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR02 SGSM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KI13 SGSM3 "Small G protein signaling modulator 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTE5 SGSM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HU1 SGSM3 "Small G protein signaling modulator 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0038304 CG12241 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7T2D0SGSM3_DANRENo assigned EC number0.66390.41490.1615yesN/A
Q8VCZ6SGSM3_MOUSENo assigned EC number0.62040.46590.1826yesN/A
Q2KI13SGSM3_BOVINNo assigned EC number0.60580.46590.1834yesN/A
Q96HU1SGSM3_HUMANNo assigned EC number0.62770.46590.1829yesN/A
Q6P6R7SGSM3_RATNo assigned EC number0.62040.46590.1829yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 8e-33
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 1e-31
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 4e-26
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  119 bits (301), Expect = 8e-33
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 128 WFESNYCQGTGMIAASLLLLME-EEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRS 186
             E  YCQG   +AA LLL+ME EE+AFW L  ++E   P ++Y P++ G+Q D   L  
Sbjct: 86  NPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGP-NFYLPDMSGLQLDLLQLDR 144

Query: 187 LVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQIT 246
           LV    P L   L    I  SL  L WFLTLFA  +  +I+LRIWD+LF +GS  LF++ 
Sbjct: 145 LVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVA 204

Query: 247 LGMLKIKDTIYI 258
           L +LK+   + +
Sbjct: 205 LALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
KOG2058|consensus436 100.0
KOG2223|consensus586 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.97
KOG2222|consensus 848 99.96
KOG4567|consensus370 99.95
KOG1092|consensus484 99.95
KOG4436|consensus 948 99.94
KOG1093|consensus 725 99.94
KOG4347|consensus 671 99.94
KOG1102|consensus397 99.9
KOG2221|consensus267 99.81
KOG2224|consensus781 99.78
KOG2595|consensus395 99.76
KOG1091|consensus 625 99.73
KOG2197|consensus488 99.67
KOG4436|consensus 948 99.6
KOG3636|consensus 669 99.3
KOG2801|consensus 559 98.48
PF149611296 BROMI: Broad-minded protein 96.77
KOG1648|consensus813 85.88
>KOG2058|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.5e-41  Score=318.97  Aligned_cols=208  Identities=38%  Similarity=0.536  Sum_probs=184.4

Q ss_pred             cCCCCCccc-chHHHHhhhhCCC------------ccc--ccccccc-cccCCCCCc-chhcccCCCCchhHHHHHHHhh
Q psy4079          62 VGCPSKSAG-NWPKQAIVFLNLP------------VES--RVVGCPS-KSAGNWPKQ-AIVFLNLPVDSGVVVNALDFGS  124 (294)
Q Consensus        62 ~GIP~~lRg-vW~~L~~~~~~~~------------~~~--~~~~~i~-dv~Rtfp~~-~~f~~~~~~~~~~~~~~l~l~~  124 (294)
                      +|||+.+|| ||..+.|.....+            .++  ...++|+ |+.||||++ ..|....+    .+.+.|++++
T Consensus       155 kGiP~~~R~~VW~~~~g~~~~~~~~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~----~~~~~LrRvL  230 (436)
T KOG2058|consen  155 KGIPPELRGEVWWVLSGARRQLNYPGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDS----DGRQTLRRVL  230 (436)
T ss_pred             cCCChhhhhHHHHHHhcchhhccCchhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCc----hHHHHHHHHH
Confidence            899999999 9999998322222            112  3677787 999999999 56655433    2256666777


Q ss_pred             hHhhh---cCccccCchHHHHHhccCCC-HHHHHHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHh
Q psy4079         125 GGWWF---ESNYCQGTGMIAASLLLLME-EEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLL  200 (294)
Q Consensus       125 i~~~~---~iGY~QGM~~Iaa~LL~~~~-E~~aF~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~  200 (294)
                      ++++.   +||||||||++||++|++++ ||+|||+|+.+++++++. ||++++.|.+..+.+++.+++..+|+|+.||.
T Consensus       231 ~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~  309 (436)
T KOG2058|consen  231 LAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLHLE  309 (436)
T ss_pred             HHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHHHhhh
Confidence            77766   99999999999999999998 999999999999999995 99999999999999999999999999999999


Q ss_pred             hCCcchhHhHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhcccc
Q psy4079         201 QHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQ  274 (294)
Q Consensus       201 ~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~~  274 (294)
                      ..+++..+++.+||+++|+...|.++++||||.+|+||.+++|++|+|+++..+++|+++++..++++.+....
T Consensus       310 ~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~  383 (436)
T KOG2058|consen  310 GNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLT  383 (436)
T ss_pred             hcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998885433

>KOG2223|consensus Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 2e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 4e-10
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 3e-06
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 1e-04
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%)
Query: 130 ESNYCQGTGMIAASXXXXXXXXXAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVA 189
           E  YCQG   +A           AF  L  ++ DL     Y P+++ +Q     L  L+ 
Sbjct: 135 EVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLH 194
Query: 190 SGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGM 249
                L   L +++I  SL    WFLTLFAS      + R++D++FL G+ V+F++ L +
Sbjct: 195 DYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSL 254
Query: 250 LKIKDTI 256
           L  ++T+
Sbjct: 255 LSSQETL 261
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-50
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 3e-50
2qq8_A334 TBC1 domain family member 14; structural genomics 2e-49
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-22
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-21
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-18
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
 Score =  167 bits (426), Expect = 2e-50
 Identities = 40/121 (33%), Positives = 56/121 (46%)

Query: 133 YCQGTGMIAASLLLLMEEEEAFWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGL 192
           YCQG   +AA LLL M EE+AF  L  I+ D      Y  N   +      L  L+   L
Sbjct: 114 YCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL 173

Query: 193 PQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLFLDGSMVLFQITLGMLKI 252
           P L       ++E  +    WFLTLF +     ++  I DLL  +G  ++F + L +LK 
Sbjct: 174 PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKT 233

Query: 253 K 253
            
Sbjct: 234 S 234
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.96
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.5e-44  Score=331.61  Aligned_cols=243  Identities=19%  Similarity=0.306  Sum_probs=195.2

Q ss_pred             EEeccccccCCcchhhhhcCCCcceee-cCCCCCccc-chHHHHhhhhCCCcc---------------------------
Q psy4079          35 CIVGSKCAGNWPKQAIVFLNLPVESRV-VGCPSKSAG-NWPKQAIVFLNLPVE---------------------------   85 (294)
Q Consensus        35 ~~~~~~~~~~w~~~~~~~~~~~~~sr~-~GIP~~lRg-vW~~L~~~~~~~~~~---------------------------   85 (294)
                      ..|.++++.+|.+-.-   ...+..+. +|||+.+|| +|+.++|+..+...+                           
T Consensus        22 ~~W~~~il~~w~~~~~---~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d   98 (334)
T 2qq8_A           22 LTWNNEILPNWETMWC---SRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENED   98 (334)
T ss_dssp             HHHHHTTGGGCC--CC---CHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHhHHhccC---hHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence            4577778888875211   11123333 999999999 999999874321110                           


Q ss_pred             --------cccccccc-cccCCCCCcchhcccCCCCchhHHHHHHHhhhHhhh---cCccccCchHHHHHhccCCCHHHH
Q psy4079          86 --------SRVVGCPS-KSAGNWPKQAIVFLNLPVDSGVVVNALDFGSGGWWF---ESNYCQGTGMIAASLLLLMEEEEA  153 (294)
Q Consensus        86 --------~~~~~~i~-dv~Rtfp~~~~f~~~~~~~~~~~~~~l~l~~i~~~~---~iGY~QGM~~Iaa~LL~~~~E~~a  153 (294)
                              .+..++|+ |+.||||++.+|..+     +...+.++.++.+|+.   ++|||||||+|||+||++++|++|
T Consensus        99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~-----~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~a  173 (334)
T 2qq8_A           99 AGFSAADREASLELIKLDISRTFPNLCIFQQG-----GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADA  173 (334)
T ss_dssp             --------CCHHHHHHHHHHTSSGGGCSSSTT-----STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHH
T ss_pred             cccccccchhHHHHHHHHHhhcCCCchhhcCC-----CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence                    12335676 999999999999753     1233444455555544   999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCCCchhhHHhHHHHHHHHHhhChHHHHHHhhCCcchhHhHHHHHHHHhccCCCHHHHHHHHHH
Q psy4079         154 FWTLSAIVEDLLPASYYTPNLIGIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDL  233 (294)
Q Consensus       154 F~~~~~l~~~~~~~~~f~~~~~~l~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~~p~~~vlriWD~  233 (294)
                      ||||+++|+++.++++|.++.++++..+..++.+++..+|+|++||++.|+++.+|+.+||+|+|++++|++.++||||.
T Consensus       174 F~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~  253 (334)
T 2qq8_A          174 FIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV  253 (334)
T ss_dssp             HHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence            99999999987666789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhHHHhhCCCCHHHHHhhhcccc----chhhhhhhcCCC
Q psy4079         234 LFLDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQ----LRGLVYMETNMF  286 (294)
Q Consensus       234 ~l~eG~~~l~~ialAiL~~~k~~Ll~~~d~~~il~~l~~~~----~~~~~~~~~~~~  286 (294)
                      ++++|.++++++|+|+|+.++++|+++ |.+++++.++..+    .+.+......+.
T Consensus       254 ~l~eg~~~l~~valaiL~~~~~~Ll~~-d~~~il~~L~~lp~~~d~~~l~~~a~~l~  309 (334)
T 2qq8_A          254 FCRDGEEFLFRTALGILKLFEDILTKM-DFIHMAQFLTRLPEDLPAEELFASIATIQ  309 (334)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence            999999999999999999999999998 4677777776543    445555544443
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-13
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (160), Expect = 1e-13
 Identities = 15/107 (14%), Positives = 24/107 (22%)

Query: 176 GIQADQKVLRSLVASGLPQLELSLLQHDIELSLITLHWFLTLFASVVHFKILLRIWDLLF 235
           GI    K L  LV      L        +E       W   L         ++R+WD   
Sbjct: 4   GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 63

Query: 236 LDGSMVLFQITLGMLKIKDTIYIVLSSPIAITMGTCVYQLRGLVYME 282
            + S  +                     +A  +            + 
Sbjct: 64  SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALS 110

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.75
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.71
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.4e-19  Score=153.82  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=74.8

Q ss_pred             cCCCCCccc-chHHHHhhhhC-C--------------------------Ccccccccccc-cccCCCCCcchhcccCCCC
Q psy4079          62 VGCPSKSAG-NWPKQAIVFLN-L--------------------------PVESRVVGCPS-KSAGNWPKQAIVFLNLPVD  112 (294)
Q Consensus        62 ~GIP~~lRg-vW~~L~~~~~~-~--------------------------~~~~~~~~~i~-dv~Rtfp~~~~f~~~~~~~  112 (294)
                      +|||+.+|+ +|+.++|+.-. .                          ..+.+...+|+ |+.||+|++..|..     
T Consensus        31 ~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~-----  105 (194)
T d1fkma1          31 NGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQF-----  105 (194)
T ss_dssp             TCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTSGGGGS-----
T ss_pred             cCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCCccccccc-----
Confidence            899999999 99999986210 0                          00122345676 99999999999865     


Q ss_pred             chhHHHHHHHhhhHhhh---cCccccCchHHHHHhccCC-----------------------------CHHHHHHHHHHH
Q psy4079         113 SGVVVNALDFGSGGWWF---ESNYCQGTGMIAASLLLLM-----------------------------EEEEAFWTLSAI  160 (294)
Q Consensus       113 ~~~~~~~l~l~~i~~~~---~iGY~QGM~~Iaa~LL~~~-----------------------------~E~~aF~~~~~l  160 (294)
                       ....+.+++++.+|+.   ++|||||||+|||+|++++                             .|+||||||..+
T Consensus       106 -~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~l  184 (194)
T d1fkma1         106 -KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKL  184 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHH
Confidence             3455666666666655   9999999999999999753                             188999999999


Q ss_pred             HhccC
Q psy4079         161 VEDLL  165 (294)
Q Consensus       161 ~~~~~  165 (294)
                      |++..
T Consensus       185 m~~i~  189 (194)
T d1fkma1         185 LEQIT  189 (194)
T ss_dssp             HGGGG
T ss_pred             HHhhh
Confidence            98853
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure