Psyllid ID: psy4097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLSVF
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccEEcccccccccccccccccEEEEcccccccEEEEEcccccEEccccccccccccccccccccccccccEEEEcccccEEEEcccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccEEcccccccccccccEEEcccccccccccccccccEEEEccccccEEEEEEcccccccccccccccEcccccccccccccccccEEEEcccccEEEEcccccccccccccHHHHHc
Coil and Loop (DISEMBL)
mtpyvecintqgyrkcgqcphgwvgdgttcrqgttgcsvqnggchplatcretsdTVRSVisctcppgmggsgvglmgcaygmsgnpcggvtcehggicapigdrgyrcqcepgftgeseLLVPLLSVF
Flexible Loop (DISEMBL)
MTPYVECIntqgyrkcgqcpHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPgftgesellvpllsvf
Low Complexity Region (SEG)
MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPgmggsgvglmgCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLSVF
Disordered region (IsUnstruct)
***YVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLL***
Disordered Region (DISOPRED)
MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLSVF
Disordered Region (DISEMBL)
MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLSVF
Disordered Region (DISPRO)
*TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLS*F
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLLSVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q20911	4047	Probable cubilin OS=Caeno	yes	N/A	0.875	0.027	0.411	6e-14
O60494	3623	Cubilin OS=Homo sapiens G	yes	N/A	0.844	0.030	0.435	2e-12
O70244	3623	Cubilin OS=Rattus norvegi	yes	N/A	0.868	0.030	0.393	3e-12
Q9JLB4	3623	Cubilin OS=Mus musculus G	yes	N/A	0.868	0.030	0.401	4e-12
Q9TU53	3620	Cubilin OS=Canis familiar	yes	N/A	0.844	0.030	0.410	1e-10
Q8WWQ8	2551	Stabilin-2 OS=Homo sapien	no	N/A	0.775	0.039	0.316	0.0004

>sp|Q20911|CUBN_CAEEL Probable cubilin OS=Caenorhabditis elegans GN=ZC116.3 PE=1 SV=4

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 63/119 (52%), Gaps = 6/119 (5%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV- 60
           +P  +C NT G   C  CP G+ GDG  C +  + C V+N  CH LATC+ T D   +V 
Sbjct: 358 SPLSKCHNTLGSYYCDSCPTGYSGDGGNCVKDDS-C-VKNK-CHKLATCKVTDDGYSAVG 414

Query: 61  -ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
             +C CP G  G G+G  GC    S N C    C + G C P  D  Y+C+CE GF G+
Sbjct: 415 DYTCYCPDGYVGDGIGEEGCVKSAS-NVCQNHNCVNAGKCKPTSDTEYKCECEAGFLGK 472

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake.
Caenorhabditis elegans (taxid: 6239)

>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=5

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
           + P VEC+NT G   C  CP G+ GDG  C   T  CSV NGGCHP A+C   S T+ S+
Sbjct: 318 VAPPVECVNTPGSSHCQACPPGYQGDGRVCTL-TDICSVSNGGCHPDASC---SSTLGSL 373

Query: 61  ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
             CTC PG  G+G G  GC      N C    C +G     +   GY C+C+ G+TG
Sbjct: 374 PLCTCLPGYTGNGYGPNGCV--QLSNICLSHPCLNGQCIDTVS--GYFCKCDSGWTG 426

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the GIF-cobalamin complex. The binding of all ligands requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. Interaction with LRP2 mediates its trafficking throughout vesicles and facilitates the uptake of specific ligands like GC, hemoglobin, ALB, TF and SCGB1A1. Interaction with AMN controls its trafficking to the plasma membrane and facilitates endocytosis of ligands. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.

Homo sapiens (taxid: 9606)

>sp|O70244|CUBN_RAT Cubilin OS=Rattus norvegicus GN=Cubn PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 3   PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
           P V C+NT G   CG CP G+ GDG  C      CS+ NGGCHP ATC  +      +  
Sbjct: 317 PLVPCLNTPGSFSCGNCPAGFSGDGRVCTP-VDICSIHNGGCHPEATCSSSPVLGSFLPV 375

Query: 63  CTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
           CTCPPG  G+G G  GC      N C    C +G     +    Y C+C+ G++G++
Sbjct: 376 CTCPPGYTGNGYGSNGCV--RLSNICSRHPCVNGQCIETVS--SYFCKCDSGWSGQN 428

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the GIF-cobalamin complex. The binding of all ligands requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. Interaction with LRP2 mediates its trafficking throughout vesicles and facilitates the uptake of specific ligands like GC, hemoglobin, ALB, TF and SCGB1A1. Interaction with AMN controls its trafficking to the plasma membrane and facilitates endocytosis of ligands. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.

Rattus norvegicus (taxid: 10116)

>sp|Q9JLB4|CUBN_MOUSE Cubilin OS=Mus musculus GN=Cubn PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 3   PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
           P V C+NT G   CG CP G+ GDG  C      CS+ NGGCHP ATC  +S     +  
Sbjct: 317 PLVPCLNTPGSFTCGNCPAGFSGDGRVCTPLDI-CSIHNGGCHPDATCSSSSVLGSLLPV 375

Query: 63  CTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
           CTCPPG  G+G G  GC      N C    C +G     +    Y C+C+ G+ G++
Sbjct: 376 CTCPPGYTGNGYGSNGCV--RLSNMCSRHPCVNGQCIETVS--SYFCKCDSGWFGQN 428

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the GIF-cobalamin complex. The binding of all ligands requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. Interaction with LRP2 mediates its trafficking throughout vesicles and facilitates the uptake of specific ligands like GC, hemoglobin, ALB, TF and SCGB1A1. Interaction with AMN controls its trafficking to the plasma membrane and facilitates endocytosis of ligands. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.

Mus musculus (taxid: 10090)

>sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 8/117 (6%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
           + P V C+NT G   C  CP G+ GDG  C      CSV NGGCHP A+C   S  + S+
Sbjct: 315 VVPPVMCVNTLGSYHCQACPPGYQGDGRVCTV-IDICSVNNGGCHPEASC---SSVLGSL 370

Query: 61  ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
             CTC PG  G+G G  GCA     + C    C +G     +   GY C+CE G+ G
Sbjct: 371 PLCTCLPGYTGNGYGPNGCA--QLSDTCLSHPCLNGQCIETVS--GYLCKCESGWAG 423

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the GIF-cobalamin complex. The binding of all ligands requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. Interaction with LRP2 mediates its trafficking throughout vesicles and facilitates the uptake of specific ligands like GC, hemoglobin, ALB, TF and SCGB1A1. Interaction with AMN controls its trafficking to the plasma membrane and facilitates endocytosis of ligands. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.

Canis familiaris (taxid: 9615)

>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens GN=STAB2 PE=1 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 17/117 (14%)

Query: 9    NTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPG 68
            N+ G   C +C  G+ G+GT C      C + NGGC   A C+ T+   R    CTC  G
Sbjct: 1449 NSDGTASC-KCAAGFQGNGTIC-TAINACEISNGGCSAKADCKRTTPGRR---VCTCKAG 1503

Query: 69   MGGSGVGLMGCAYGMSGNPC----GGVTCEHGGICAPIGDRGYRCQCEPGFTGESEL 121
              G G+        +  NPC    GG  C+    C   G     C C P +TG+ ++
Sbjct: 1504 YTGDGI------VCLEINPCLENHGG--CDKNAECTQTGPNQAACNCLPAYTGDGKV 1552

Phosphatidylserine receptor that enhances the engulfment of apoptotic cells. Hyaluronan receptor that binds to and mediates endocytosis of hyaluronic acid (HA). Acts also, in different species, as a primary systemic scavenger receptor for heparin (Hep), chondroitin sulfate (CS), dermatan sulfate (DS), nonglycosaminoglycan (GAG), acetylated low-density lipoprotein (AcLDL), pro-collagen propeptides and advanced glycation end products (AGE). May serve to maintain tissue integrity by supporting extracellular matrix turnover or it may contribute to maintaining fluidity of bodily liquids by resorption of hyaluronan. Counter receptor which plays an important role in lymphocyte recruitment in the hepatic vasculature. Binds to both Gram-positive and Gram-negative bacteria and may play a role in defense against bacterial infection. The proteolytically processed 190 kDa form also functions as an endocytosis receptor for heparin internalisation as well as HA and CS.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
328777634	3691	PREDICTED: LOW QUALITY PROTEIN: cubilin	0.875	0.030	0.474	1e-19
380015478	3703	PREDICTED: LOW QUALITY PROTEIN: cubilin-	0.883	0.030	0.474	1e-19
328705632	3691	PREDICTED: cubilin-like [Acyrthosiphon p	0.899	0.031	0.391	1e-18
307176866	3672	Cubilin [Camponotus floridanus]	0.883	0.031	0.466	1e-17
332020477	3742	Cubilin [Acromyrmex echinatior]	0.883	0.030	0.466	2e-17
170032252	3724	cubilin [Culex quinquefasciatus] gi|1678	0.821	0.028	0.477	2e-17
195326934	861	GM24707 [Drosophila sechellia] gi|194119	0.868	0.130	0.435	1e-16
195448629	2603	GK10140 [Drosophila willistoni] gi|19416	0.852	0.042	0.459	2e-16
195589621	3873	GD12774 [Drosophila simulans] gi|1941965	0.868	0.028	0.435	2e-16
195039613	3751	GH12407 [Drosophila grimshawi] gi|193900	0.875	0.030	0.426	2e-16

>gi|328777634|ref|XP_394526.3| PREDICTED: LOW QUALITY PROTEIN: cubilin [Apis mellifera]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 66/116 (56%), Gaps = 3/116 (2%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           +P V+CINT G R CG CP G+ GDG TC      C++ NGGCHPLATC E S    + +
Sbjct: 331 SPLVQCINTMGSRMCGACPTGYRGDGVTCVY-VGSCAINNGGCHPLATCVENSALTSAYV 389

Query: 62  SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
            C CPPG  G G+G  GC      +PC    C HG   A  G   Y C C+PG+TG
Sbjct: 390 ICRCPPGTAGDGIGPNGCQSSTEASPCSNNPCVHGKCTAVSG--TYSCTCDPGYTG 443

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015478|ref|XP_003691728.1| PREDICTED: LOW QUALITY PROTEIN: cubilin-like [Apis florea]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           +P VECINT G R CG CP G+ GDG TC      C++ NGGCHPLATC E S    + +
Sbjct: 345 SPLVECINTMGSRMCGACPTGYRGDGVTCVY-VGSCAINNGGCHPLATCVENSALTSAYV 403

Query: 62  SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
            C CPPG  G G+G  GC      +PC    C HG  CA +    Y C C+ G+TG
Sbjct: 404 ICRCPPGTVGDGIGPNGCQSSTEVSPCSSNPCVHGK-CATVSGNTYACTCDAGYTG 458

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705632|ref|XP_001950566.2| PREDICTED: cubilin-like [Acyrthosiphon pisum]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 4/120 (3%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTG-CSVQNGGCHPLATCRETSDTVRS 59
           + P V+CINT+G  KC  CP G+ G+G  C   + G C++ NGGCHP A C   ++T   
Sbjct: 231 VNPRVQCINTRGSFKCDSCPPGYSGNGFNCVYKSGGACAIDNGGCHPNAECTLYAETT-- 288

Query: 60  VISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
            I CTC  G  G+G+G+ GC       PC    C   G+C       + CQC+ G+TG++
Sbjct: 289 -IQCTCRQGYNGNGIGMNGCIKDNRIYPCLNNPCGSHGVCLSNSTDSFSCQCDTGYTGQT 347

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176866|gb|EFN66210.1| Cubilin [Camponotus floridanus]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           +PYV+C+NT G R CG CP G+ GDG +C     GC++ NGGCHPLA C E      S +
Sbjct: 347 SPYVQCMNTMGSRVCGACPSGYRGDGVSC-IFVGGCAINNGGCHPLAICSENPSLTSSYV 405

Query: 62  SCTCPPGMGGSGVGLMGCAYG-MSGN-PCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
            C CPPG  G+G+G  GC    +S N  C    C H G C P G  G+ C C PG++G
Sbjct: 406 LCRCPPGYVGNGMGPNGCQLADVSVNTACSVNPCVH-GTCVPNGANGFTCTCNPGYSG 462

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020477|gb|EGI60892.1| Cubilin [Acromyrmex echinatior]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           +PYV+CINT G R CG CP G+ GDG +C     GC++ NGGCHPLATC E      S +
Sbjct: 353 SPYVQCINTMGSRTCGACPPGYRGDGVSC-IFVGGCAINNGGCHPLATCTENPSLTSSYV 411

Query: 62  SCTCPPGMGGSGVGLMGCAYG-MSGN-PCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
            C CPP   G+G+G  GC    +S N  C    C H G C P G  G+ C+C  G++G
Sbjct: 412 LCRCPPDYVGNGMGPNGCQLADVSLNTACSSNPCVH-GTCVPNGANGFTCRCNSGYSG 468

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032252|ref|XP_001843996.1| cubilin [Culex quinquefasciatus] gi|167872112|gb|EDS35495.1| cubilin [Culex quinquefasciatus]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 2   TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           TP V CINT+G  KCG CP G++GDG TC      C+   G CHPLA C+  S+    V+
Sbjct: 338 TPSVTCINTRGSYKCGSCPLGYIGDGKTCTMRGNRCTP--GLCHPLARCKAFSE----VV 391

Query: 62  SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPG 114
           SC CPPG  GSG G  GC    + +PC    C++GG C P+G   Y C C PG
Sbjct: 392 SCQCPPGYQGSGFGPTGCIRA-TLSPCDLNPCKNGGTCTPVGTNNYNCSCPPG 443

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326934|ref|XP_002030178.1| GM24707 [Drosophila sechellia] gi|194119121|gb|EDW41164.1| GM24707 [Drosophila sechellia]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
           + P V C NT+G  +CG+CP GW GDG TC    +      G CHPLA C   SD    +
Sbjct: 344 LQPRVTCTNTEGSHRCGRCPAGWTGDGRTCTASDSNSCNNEGICHPLAKCEYVSD----M 399

Query: 61  ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
           + CTCP G  G G G+ GC    S  PC    C++ G C   G RG  C C+PG+TG
Sbjct: 400 VVCTCPLGSFGHGYGVDGCTADSSRLPCDQHPCQNNGTCVQNG-RGTTCICQPGYTG 455

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195448629|ref|XP_002071743.1| GK10140 [Drosophila willistoni] gi|194167828|gb|EDW82729.1| GK10140 [Drosophila willistoni]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 69/124 (55%), Gaps = 14/124 (11%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTC----RQGT-----TGCSVQNGGCHPLATCR 51
           ++P V+CINT G   CG CP GW+GDG TC    RQG+     T CS     CHP ATC 
Sbjct: 273 LSPKVDCINTYGSNHCGACPVGWMGDGRTCVRDPRQGSAIGSITSCSRNTNLCHPRATCA 332

Query: 52  ETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQC 111
           E S+TV     C+CP GM GSG G  GC  G + N C G+ C +GG C   G   + C C
Sbjct: 333 EISNTV----VCSCPAGMIGSGFGPNGCITGTANN-CDGLPCLNGGTCLDAGMSNFTCLC 387

Query: 112 EPGF 115
             G+
Sbjct: 388 PRGY 391

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195589621|ref|XP_002084549.1| GD12774 [Drosophila simulans] gi|194196558|gb|EDX10134.1| GD12774 [Drosophila simulans]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
           + P V C NT+G  +CG+CP GW GDG TC    +      G CHPLA C   SD    +
Sbjct: 344 LQPRVTCTNTEGSHRCGRCPAGWTGDGRTCTASDSNSCNNEGICHPLAKCEYVSD----M 399

Query: 61  ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
           + CTCP G  G G G+ GC    S  PC    C++ G C   G RG  C C+PG+TG
Sbjct: 400 VVCTCPLGSFGHGYGVDGCTADSSRLPCDQHPCQNNGTCVQNG-RGTTCICQPGYTG 455

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195039613|ref|XP_001990916.1| GH12407 [Drosophila grimshawi] gi|193900674|gb|EDV99540.1| GH12407 [Drosophila grimshawi]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 68/129 (52%), Gaps = 16/129 (12%)

Query: 1   MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQ-----------GTTGCSVQNGGCHPLAT 49
           + P VECIN+ G   CG+CP GW GDG TC++           G T C  +   CHP A 
Sbjct: 331 LRPRVECINSYGSSHCGECPIGWTGDGRTCQRTSNIDSPVGAVGLTSCMQRASLCHPAAI 390

Query: 50  CRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRC 109
           C E S+T    I C+CP GM GSG G  GC +G + N C  + C +GGIC   G   + C
Sbjct: 391 CSEISNT----IICSCPRGMVGSGYGDNGCLHGTNTN-CNDMPCLNGGICMDNGPSNFTC 445

Query: 110 QCEPGFTGE 118
            C  GF G 
Sbjct: 446 DCPRGFHGR 454

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
FB|FBgn0259140	3545	CG42255 [Drosophila melanogast	0.868	0.031	0.384	1.3e-18
UNIPROTKB|E1BRZ8	3529	CUBN "Uncharacterized protein"	0.875	0.032	0.388	6.3e-17
UNIPROTKB|E1BRZ9	669	CUBN "Uncharacterized protein"	0.821	0.158	0.380	2.1e-15
UNIPROTKB|F1NZQ3	3633	CUBN "Uncharacterized protein"	0.844	0.030	0.382	5.3e-15
RGD|68355	3623	Cubn "cubilin (intrinsic facto	0.860	0.030	0.372	8.6e-15
UNIPROTKB|O70244	3623	Cubn "Cubilin" [Rattus norvegi	0.860	0.030	0.372	8.6e-15
MGI|MGI:1931256	3623	Cubn "cubilin (intrinsic facto	0.860	0.030	0.372	1.4e-14
UNIPROTKB|O60494	3623	CUBN "Cubilin" [Homo sapiens (	0.844	0.030	0.401	1.8e-14
UNIPROTKB|F1NIW7	3634	CUBN "Uncharacterized protein"	0.821	0.029	0.380	1.8e-14
WB|WBGene00013855	4047	ZC116.3 [Caenorhabditis elegan	0.875	0.027	0.369	5.3e-14

FB|FBgn0259140 CG42255 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 45/117 (38%), Positives = 58/117 (49%)

Query:     1 MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
             + P V C NT+G  +CG+CP GW GDG TC    +      G CHPLA C   SD    +
Sbjct:   344 LQPRVTCTNTEGSHRCGRCPAGWTGDGRTCTASDSNSCNNEGICHPLAKCEYVSD----M 399

Query:    61 ISCTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
             + CTCP            C+   S  PC    C++ G C   G RG  C C+PG++G
Sbjct:   400 VVCTCPLGSFGHGYGADGCSADSSRLPCDQHPCQNNGTCVQNG-RGTTCICQPGYSG 455

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E1BRZ8 CUBN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 47/121 (38%), Positives = 58/121 (47%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V+CINT G  +CG CP G+ GDG TC Q    CS+ NGGCHP ATC  T   +     
Sbjct:   205 PMVQCINTIGSFRCGVCPPGYEGDGQTCTQ-VDSCSINNGGCHPSATCTSTPGLMPF--- 260

Query:    63 CTCPPXXXXXXXXXXXCA----YGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
             C+C P           C+         NPC    C +  +CA     GY C C  G+TG 
Sbjct:   261 CSCSPGYTGSGYGPNGCSPLTDICQLQNPCANGQCLNEVLCAQAVTSGYFCLCNAGWTGS 320

Query:   119 S 119
             +
Sbjct:   321 N 321

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1BRZ9 CUBN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 46/121 (38%), Positives = 56/121 (46%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V+CINT G  +CG CP G+ GDG TC Q    CS+ NGGCHP ATC  T   +     
Sbjct:   201 PMVQCINTIGSFRCGVCPPGYEGDGQTCTQ-VDSCSINNGGCHPSATCTSTPGLMPF--- 256

Query:    63 CTCPPXXXXXXXXXXXCA----YGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
             C+C P           C+         NPC        G C  +   GY C C  G+TG 
Sbjct:   257 CSCSPGYTGSGYGPNGCSPLTDICQLQNPCAN------GQCLAVTS-GYFCLCNAGWTGS 309

Query:   119 S 119
             +
Sbjct:   310 N 310

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1NZQ3 CUBN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 209 (78.6 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 47/123 (38%), Positives = 57/123 (46%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V+CINT G  +CG CP G+ GDG TC Q    CS+ NGGCHP ATC  T   V   + 
Sbjct:   320 PMVQCINTIGSFRCGVCPPGYEGDGQTCTQ-VDSCSINNGGCHPSATCTSTPALVSQGLM 378

Query:    63 --CTCPPXXXXXXXXXXXCA----YGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFT 116
               C+C P           C+         NPC        G C  +   GY C C  G+T
Sbjct:   379 PFCSCSPGYTGSGYGPNGCSPLTDICQLQNPCAN------GQCLAVTS-GYFCLCNAGWT 431

Query:   117 GES 119
             G +
Sbjct:   432 GSN 434

GO:0005509 "calcium ion binding" evidence=IEA

RGD|68355 Cubn "cubilin (intrinsic factor-cobalamin receptor)" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 8.6e-15, P = 8.6e-15
 Identities = 44/118 (37%), Positives = 59/118 (50%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V C+NT G   CG CP G+ GDG  C      CS+ NGGCHP ATC  +S  + S + 
Sbjct:   317 PLVPCLNTPGSFSCGNCPAGFSGDGRVCTPVDI-CSIHNGGCHPEATC-SSSPVLGSFLP 374

Query:    63 -CTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
              CTCPP           C   +S N C    C +G     +    Y C+C+ G++G++
Sbjct:   375 VCTCPPGYTGNGYGSNGCVR-LS-NICSRHPCVNGQCIETVSS--YFCKCDSGWSGQN 428

GO:0001701 "in utero embryonic development" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005903 "brush border" evidence=ISO

GO:0005905 "coated pit" evidence=ISO

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA

GO:0007584 "response to nutrient" evidence=IMP

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0020028 "hemoglobin import" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030492 "hemoglobin binding" evidence=IDA

GO:0030666 "endocytic vesicle membrane" evidence=IDA

GO:0031419 "cobalamin binding" evidence=IEA

GO:0031526 "brush border membrane" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA;IPI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043202 "lysosomal lumen" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045177 "apical part of cell" evidence=ISO

GO:0070207 "protein homotrimerization" evidence=IDA

UNIPROTKB|O70244 Cubn "Cubilin" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 8.6e-15, P = 8.6e-15
 Identities = 44/118 (37%), Positives = 59/118 (50%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V C+NT G   CG CP G+ GDG  C      CS+ NGGCHP ATC  +S  + S + 
Sbjct:   317 PLVPCLNTPGSFSCGNCPAGFSGDGRVCTPVDI-CSIHNGGCHPEATC-SSSPVLGSFLP 374

Query:    63 -CTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
              CTCPP           C   +S N C    C +G     +    Y C+C+ G++G++
Sbjct:   375 VCTCPPGYTGNGYGSNGCVR-LS-NICSRHPCVNGQCIETVSS--YFCKCDSGWSGQN 428

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:1931256 Cubn "cubilin (intrinsic factor-cobalamin receptor)" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/118 (37%), Positives = 59/118 (50%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V C+NT G   CG CP G+ GDG  C      CS+ NGGCHP ATC  +S  + S++ 
Sbjct:   317 PLVPCLNTPGSFTCGNCPAGFSGDGRVCTPLDI-CSIHNGGCHPDATC-SSSSVLGSLLP 374

Query:    63 -CTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
              CTCPP           C   +S N C    C +G     +    Y C+C+ G+ G++
Sbjct:   375 VCTCPPGYTGNGYGSNGCVR-LS-NMCSRHPCVNGQCIETVSS--YFCKCDSGWFGQN 428

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0004872 "receptor activity" evidence=ISO;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005903 "brush border" evidence=IDA

GO:0005905 "coated pit" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IMP

GO:0007584 "response to nutrient" evidence=ISO

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0020028 "hemoglobin import" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030492 "hemoglobin binding" evidence=ISO

GO:0030666 "endocytic vesicle membrane" evidence=ISO

GO:0031419 "cobalamin binding" evidence=IEA

GO:0031526 "brush border membrane" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042953 "lipoprotein transport" evidence=IDA

GO:0043202 "lysosomal lumen" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070207 "protein homotrimerization" evidence=ISO

UNIPROTKB|O60494 CUBN "Cubilin" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 47/117 (40%), Positives = 59/117 (50%)

Query:     1 MTPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV 60
             + P VEC+NT G   C  CP G+ GDG  C   T  CSV NGGCHP A+C   S T+ S+
Sbjct:   318 VAPPVECVNTPGSSHCQACPPGYQGDGRVCTL-TDICSVSNGGCHPDASC---SSTLGSL 373

Query:    61 ISCTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
               CTC P           C   +S N C    C +G     +   GY C+C+ G+TG
Sbjct:   374 PLCTCLPGYTGNGYGPNGCVQ-LS-NICLSHPCLNGQCIDTVS--GYFCKCDSGWTG 426

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0031419 "cobalamin binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=NAS

GO:0031232 "extrinsic to external side of plasma membrane" evidence=NAS

GO:0001894 "tissue homeostasis" evidence=NAS

GO:0031526 "brush border membrane" evidence=NAS

GO:0004872 "receptor activity" evidence=TAS

GO:0005215 "transporter activity" evidence=TAS

GO:0015889 "cobalamin transport" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0042359 "vitamin D metabolic process" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1NIW7 CUBN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 46/121 (38%), Positives = 56/121 (46%)

Query:     3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVIS 62
             P V+CINT G  +CG CP G+ GDG TC Q    CS+ NGGCHP ATC  T   +     
Sbjct:   320 PMVQCINTIGSFRCGVCPPGYEGDGQTCTQ-VDSCSINNGGCHPSATCTSTPGLMPF--- 375

Query:    63 CTCPPXXXXXXXXXXXCA----YGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
             C+C P           C+         NPC        G C  +   GY C C  G+TG 
Sbjct:   376 CSCSPGYTGSGYGPNGCSPLTDICQLQNPCAN------GQCLAVTS-GYFCLCNAGWTGS 428

Query:   119 S 119
             +
Sbjct:   429 N 429

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

WB|WBGene00013855 ZC116.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 44/119 (36%), Positives = 57/119 (47%)

Query:     2 TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSV- 60
             +P  +C NT G   C  CP G+ GDG  C +  + C V+N  CH LATC+ T D   +V 
Sbjct:   358 SPLSKCHNTLGSYYCDSCPTGYSGDGGNCVKDDS-C-VKNK-CHKLATCKVTDDGYSAVG 414

Query:    61 -ISCTCPPXXXXXXXXXXXCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
               +C CP            C    S N C    C + G C P  D  Y+C+CE GF G+
Sbjct:   415 DYTCYCPDGYVGDGIGEEGCVKSAS-NVCQNHNCVNAGKCKPTSDTEYKCECEAGFLGK 472

GO:0005509 "calcium ion binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
pfam12947	36	pfam12947, EGF_3, EGF domain	0.002

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 33.7 bits (78), Expect = 0.002
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGV 74
          C+  NGGCHP ATC  T  +     +CTC  G  G GV
Sbjct: 1  CAENNGGCHPNATCTNTGGS----FTCTCKSGYTGDGV 34

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG1214|consensus	1289		99.58
KOG1219|consensus	4289		99.57
KOG4289|consensus	2531		99.34
KOG1219|consensus	4289		99.13
KOG1214|consensus	1289		99.01
KOG4289|consensus	2531		98.63
KOG4260|consensus	350		98.44
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.42
KOG1217|consensus	487		98.41
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.35
KOG1217|consensus	487		98.29
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.24
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	98.23
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.15
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	98.12
PF12662	24	cEGF: Complement Clr-like EGF-like	97.98
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.96
KOG1225|consensus	525		97.93
smart00181	35	EGF Epidermal growth factor-like domain.	97.89
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.87
KOG4260|consensus	350		97.86
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.49
KOG1225|consensus	525		97.48
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.35
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.15
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	97.14
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.92
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	96.82
PHA02887	126	EGF-like protein; Provisional	96.49
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	96.48
smart00181	35	EGF Epidermal growth factor-like domain.	96.41
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.31
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	96.09
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.0
KOG1226|consensus	783		95.69
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	95.4
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.27
KOG0994|consensus	1758		94.5
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	94.18
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.77
smart00051	63	DSL delta serrate ligand.	93.44
KOG1836|consensus	1705		92.41
KOG3516|consensus	1306		91.05
KOG3514|consensus	1591		86.23
KOG1226|consensus	783		85.76
KOG0994|consensus	1758		83.65
PF00954	110	S_locus_glycop: S-locus glycoprotein family; Inter	82.9

>KOG1214|consensus

Probab=99.58  E-value=7.9e-15  Score=108.43  Aligned_cols=111  Identities=30%  Similarity=0.715  Sum_probs=90.8

Q ss_pred             CCceeeeCCCceecccCCCCcc--cCCCCcccCC-----CCccCCCCCCCCCCeee--eCCCCCcceeeecCCCCCcCCC
Q psy4097           3 PYVECINTQGYRKCGQCPHGWV--GDGTTCRQGT-----TGCSVQNGGCHPLATCR--ETSDTVRSVISCTCPPGMGGSG   73 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~-----~~C~~~~~~C~~~~~C~--~~~~g~~~~~~c~c~~g~~g~~   73 (129)
                      +++.|+|.+++|.| .|..||.  .++.+|..+.     +.|....+.|...++|.  ... ++  .|.|.|.+||.|+|
T Consensus       746 p~s~Cin~pg~~rc-eC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hG-gs--~y~C~CLPGfsGDG  821 (1289)
T KOG1214|consen  746 PNSVCINLPGSYRC-ECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHG-GS--TYSCACLPGFSGDG  821 (1289)
T ss_pred             CCceeecCCCceeE-EEeecceeccCCcceEEecCCCCCCccccCccccCcCCceEEEecC-Cc--eEEEeecCCccCCc
Confidence            67899999999999 9999998  5667887552     55776666787655544  444 32  49999999999998


Q ss_pred             CCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          74 VGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        74 ~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .   .|. ++  |+|.+..|+..+.| .+.++++.|+|.+||.|++-+.++
T Consensus       822 ~---~c~-dv--DeC~psrChp~A~C-yntpgsfsC~C~pGy~GDGf~CVP  865 (1289)
T KOG1214|consen  822 H---QCT-DV--DECSPSRCHPAATC-YNTPGSFSCRCQPGYYGDGFQCVP  865 (1289)
T ss_pred             c---ccc-cc--cccCccccCCCceE-ecCCCcceeecccCccCCCceecC
Confidence            8   787 77  99999999999999 999999999999999998865444

>KOG1219|consensus

Probab=99.57  E-value=7.7e-15  Score=116.47  Aligned_cols=103  Identities=28%  Similarity=0.663  Sum_probs=91.7

Q ss_pred             CCceeeeCC-CceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCccc
Q psy4097           3 PYVECINTQ-GYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAY   81 (129)
Q Consensus         3 ~~~~C~~~~-g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~   81 (129)
                      ++++|...+ |+|.| .|++.|.  |+.|+...++|.++  ||..+++|.... +.   |.|.|+.+|+|.     .|+ 
T Consensus      3874 hgG~C~~~~~ggy~C-kCpsqys--G~~CEi~~epC~sn--PC~~GgtCip~~-n~---f~CnC~~gyTG~-----~Ce- 3938 (4289)
T KOG1219|consen 3874 HGGTCISQPKGGYKC-KCPSQYS--GNHCEIDLEPCASN--PCLTGGTCIPFY-NG---FLCNCPNGYTGK-----RCE- 3938 (4289)
T ss_pred             CCCEecCCCCCceEE-eCccccc--CcccccccccccCC--CCCCCCEEEecC-CC---eeEeCCCCccCc-----eee-
Confidence            567888887 67999 9999999  99998766999988  999999999877 54   999999999999     998 


Q ss_pred             CCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          82 GMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        82 ~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      ....++|..++|.+++.| ++..|+|+|.|.+||.|..|.
T Consensus      3939 ~~Gi~eCs~n~C~~gg~C-~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3939 ARGISECSKNVCGTGGQC-INIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred             cccccccccccccCCcee-eccCCceEeccChhHhcccCc
Confidence            432289999999999999 999999999999999999874

>KOG4289|consensus

Probab=99.34  E-value=2.6e-12  Score=99.55  Aligned_cols=100  Identities=26%  Similarity=0.684  Sum_probs=81.9

Q ss_pred             eCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCC
Q psy4097           9 NTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPC   88 (129)
Q Consensus         9 ~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C   88 (129)
                      +..+.+.| .|++||+  +..|+..+|.|-+.  +|.+++.|...+ +.   |+|.|.++|+|.     +|+.+.....|
T Consensus      1217 ~pvnglrC-rCPpGFT--gd~CeTeiDlCYs~--pC~nng~C~srE-gg---YtCeCrpg~tGe-----hCEvs~~agrC 1282 (2531)
T KOG4289|consen 1217 HPVNGLRC-RCPPGFT--GDYCETEIDLCYSG--PCGNNGRCRSRE-GG---YTCECRPGFTGE-----HCEVSARAGRC 1282 (2531)
T ss_pred             cccCceeE-eCCCCCC--cccccchhHhhhcC--CCCCCCceEEec-Cc---eeEEecCCcccc-----ceeeecccCcc
Confidence            44567999 9999999  77998766999987  999999999888 76   999999999999     89732222467


Q ss_pred             CCCCCCCCCeeccCCCCceeeeCCCC-CccCCCcc
Q psy4097          89 GGVTCEHGGICAPIGDRGYRCQCEPG-FTGESELL  122 (129)
Q Consensus        89 ~~~~C~~~~~C~~~~~~~~~C~C~~g-~~g~~c~~  122 (129)
                      .+..|.+++.|+....+++.|.|+.| |.+..|+.
T Consensus      1283 vpGvC~nggtC~~~~nggf~c~Cp~ge~e~prC~v 1317 (2531)
T KOG4289|consen 1283 VPGVCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEV 1317 (2531)
T ss_pred             ccceecCCCEEeecCCCceeccCCCcccCCCceEE
Confidence            78889999999434568899999987 56777764

>KOG1219|consensus

Probab=99.13  E-value=1.1e-10  Score=93.98  Aligned_cols=82  Identities=28%  Similarity=0.649  Sum_probs=70.4

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCcee
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYR  108 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~  108 (129)
                      .|....+.|..+  ||++++.|...+ ++  +|.|.|++.|.|.     +|+.+.  ++|..+||..++.| +...++|.
T Consensus      3859 gC~l~~d~C~~n--pCqhgG~C~~~~-~g--gy~CkCpsqysG~-----~CEi~~--epC~snPC~~GgtC-ip~~n~f~ 3925 (4289)
T KOG1219|consen 3859 GCSLLTDPCNDN--PCQHGGTCISQP-KG--GYKCKCPSQYSGN-----HCEIDL--EPCASNPCLTGGTC-IPFYNGFL 3925 (4289)
T ss_pred             cccccccccccC--cccCCCEecCCC-CC--ceEEeCcccccCc-----cccccc--ccccCCCCCCCCEE-EecCCCee
Confidence            455444788877  999999999877 42  4999999999999     998444  89999999999999 88999999


Q ss_pred             eeCCCCCccCCCccc
Q psy4097         109 CQCEPGFTGESELLV  123 (129)
Q Consensus       109 C~C~~g~~g~~c~~~  123 (129)
                      |.|+.||+|++|+..
T Consensus      3926 CnC~~gyTG~~Ce~~ 3940 (4289)
T KOG1219|consen 3926 CNCPNGYTGKRCEAR 3940 (4289)
T ss_pred             EeCCCCccCceeecc
Confidence            999999999999854

>KOG1214|consensus

Probab=99.01  E-value=8.2e-10  Score=82.59  Aligned_cols=106  Identities=30%  Similarity=0.770  Sum_probs=79.9

Q ss_pred             CceeeeCCC-ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc--CCCCCcCCcc
Q psy4097           4 YVECINTQG-YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG--GSGVGLMGCA   80 (129)
Q Consensus         4 ~~~C~~~~g-~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~--g~~~~~~~c~   80 (129)
                      ++.|....+ .|.| .|..||.+++++|.++ ++|+.....|..+++|++.+ ++   |.|.|..+|.  +.+.   .|.
T Consensus       705 ~a~C~pg~~~~~tc-ecs~g~~gdgr~c~d~-~eca~~~~~CGp~s~Cin~p-g~---~rceC~~gy~F~dd~~---tCV  775 (1289)
T KOG1214|consen  705 TARCHPGTGVDYTC-ECSSGYQGDGRNCVDE-NECATGFHRCGPNSVCINLP-GS---YRCECRSGYEFADDRH---TCV  775 (1289)
T ss_pred             CccccCCCCcceEE-EEeeccCCCCCCCCCh-hhhccCCCCCCCCceeecCC-Cc---eeEEEeecceeccCCc---ceE
Confidence            456666554 6999 9999999999999999 99999888999999999999 88   9999988875  3333   465


Q ss_pred             cCCC----CCCCC--CCCCCCCCe--eccCCCCceeeeCCCCCccCC
Q psy4097          81 YGMS----GNPCG--GVTCEHGGI--CAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        81 ~~~~----~~~C~--~~~C~~~~~--C~~~~~~~~~C~C~~g~~g~~  119 (129)
                       .+.    .+.|.  .+.|...+.  |+....+.|.|.|.+||.|++
T Consensus       776 -~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG  821 (1289)
T KOG1214|consen  776 -LITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDG  821 (1289)
T ss_pred             -EecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCc
Confidence             332    14454  255654334  423456789999999999887

>KOG4289|consensus

Probab=98.63  E-value=1.9e-08  Score=79.07  Aligned_cols=56  Identities=38%  Similarity=0.908  Sum_probs=50.4

Q ss_pred             eeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          60 VISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        60 ~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      ++.|+|++||+++     .|+ ... |.|-..||.+++.| ....++|.|.|.+||+|+.|+.+
T Consensus      1221 glrCrCPpGFTgd-----~Ce-Tei-DlCYs~pC~nng~C-~srEggYtCeCrpg~tGehCEvs 1276 (2531)
T KOG4289|consen 1221 GLRCRCPPGFTGD-----YCE-TEI-DLCYSGPCGNNGRC-RSREGGYTCECRPGFTGEHCEVS 1276 (2531)
T ss_pred             ceeEeCCCCCCcc-----ccc-chh-HhhhcCCCCCCCce-EEecCceeEEecCCccccceeee
Confidence            3889999999999     898 544 89999999999999 88999999999999999999864

>KOG4260|consensus

Probab=98.44  E-value=1.7e-07  Score=62.36  Aligned_cols=89  Identities=26%  Similarity=0.620  Sum_probs=67.8

Q ss_pred             ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCC
Q psy4097          13 YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVT   92 (129)
Q Consensus        13 ~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~   92 (129)
                      +..|+.|..||..+...|.++ |+|...+.+|.....|+|+. ||   |.|...+||.. +..  .|++..  +.|.   
T Consensus       216 ~k~C~kCkkGW~lde~gCvDv-nEC~~ep~~c~~~qfCvNte-GS---f~C~dk~Gy~~-g~d--~C~~~~--d~~~---  282 (350)
T KOG4260|consen  216 SKGCSKCKKGWKLDEEGCVDV-NECQNEPAPCKAHQFCVNTE-GS---FKCEDKEGYKK-GVD--ECQFCA--DVCA---  282 (350)
T ss_pred             CCChhhhcccceecccccccH-HHHhcCCCCCChhheeecCC-Cc---eEecccccccC-ChH--Hhhhhh--hhcc---
Confidence            455668999999888899999 99998888999999999999 99   99999888876 222  444111  2232   


Q ss_pred             CCCCCeeccCCCCceeeeCCCCCc
Q psy4097          93 CEHGGICAPIGDRGYRCQCEPGFT  116 (129)
Q Consensus        93 C~~~~~C~~~~~~~~~C~C~~g~~  116 (129)
                       .....| .+..+.|+|.|..++.
T Consensus       283 -~kn~~c-~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  283 -SKNRPC-MNIDGQYRCVCFSGLI  304 (350)
T ss_pred             -cCCCCc-ccCCccEEEEecccce
Confidence             123357 8899999999988763

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.42  E-value=9.5e-08  Score=43.72  Aligned_cols=31  Identities=42%  Similarity=1.117  Sum_probs=26.0

Q ss_pred             CCCCCCCCCCeeccCCC-CceeeeCCCCCccCC
Q psy4097          88 CGGVTCEHGGICAPIGD-RGYRCQCEPGFTGES  119 (129)
Q Consensus        88 C~~~~C~~~~~C~~~~~-~~~~C~C~~g~~g~~  119 (129)
                      |.+++|.+++.| +... +.|.|.|++||.|+.
T Consensus         1 C~~~~C~n~g~C-~~~~~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTC-IDLPGGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEE-EEESTSEEEEEEBTTEESTT
T ss_pred             CCCCcCCCCeEE-EeCCCCCEEeECCCCCccCC
Confidence            445689999999 6666 999999999999873

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG1217|consensus

Probab=98.41  E-value=1.9e-06  Score=62.05  Aligned_cols=104  Identities=37%  Similarity=0.839  Sum_probs=73.1

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccC-------------------CCCccCCCCCCCCC-CeeeeCCCCCcceee
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQG-------------------TTGCSVQNGGCHPL-ATCRETSDTVRSVIS   62 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~-------------------~~~C~~~~~~C~~~-~~C~~~~~g~~~~~~   62 (129)
                      .+..|.+..++|.| .|.++|.  +..|...                   ...|......|... ++|.+.. ++   +.
T Consensus       181 ~~~~C~~~~~~~~C-~c~~~~~--~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~~-~~---~~  253 (487)
T KOG1217|consen  181 NGGTCVNTGGSYLC-SCPPGYT--GSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCVNTV-GS---YT  253 (487)
T ss_pred             CCcccccCCCCeeE-eCCCCcc--CCcCcCCCCCceEecceeccCCCCCCCCCcccccccccCCCCcccccC-Cc---ee
Confidence            35678888888999 9999998  3333211                   01222221223322 6788777 66   89


Q ss_pred             ecCCCCCcCCC-CCcCCcccCCCCCCCCCC-CCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          63 CTCPPGMGGSG-VGLMGCAYGMSGNPCGGV-TCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        63 c~c~~g~~g~~-~~~~~c~~~~~~~~C~~~-~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                      |.++++|.+.. .   .+. ++  +.|... +|.+++.| ++..+.|.|.|++||.|..+
T Consensus       254 C~~~~g~~~~~~~---~~~-~~--~~C~~~~~c~~~~~C-~~~~~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  254 CRCPEGYTGDACV---TCV-DV--DSCALIASCPNGGTC-VNVPGSYRCTCPPGFTGRLC  306 (487)
T ss_pred             eeCCCCccccccc---eee-ec--cccCCCCccCCCCee-ecCCCcceeeCCCCCCCCCC
Confidence            99999998773 1   244 55  788754 38888899 88888899999999999987

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.35  E-value=1e-06  Score=41.84  Aligned_cols=35  Identities=37%  Similarity=0.970  Sum_probs=30.2

Q ss_pred             CCCCC-CCCCCCCeeccCCCCceeeeCCCCCc-cCCCc
Q psy4097          86 NPCGG-VTCEHGGICAPIGDRGYRCQCEPGFT-GESEL  121 (129)
Q Consensus        86 ~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~-g~~c~  121 (129)
                      ++|.. .+|.+++.| ++..++|.|.|++||. |..|+
T Consensus         3 ~~C~~~~~C~~~~~C-~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        3 DECASGNPCQNGGTC-VNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             ccCcCCCCcCCCCEe-ECCCCCeEeECCCCCccCCcCC
Confidence            67776 689888899 8999999999999999 87774

>KOG1217|consensus

Probab=98.29  E-value=4.6e-06  Score=60.06  Aligned_cols=107  Identities=36%  Similarity=0.853  Sum_probs=79.4

Q ss_pred             ceeeeCCCceecccCCCCcccCC-CCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCC
Q psy4097           5 VECINTQGYRKCGQCPHGWVGDG-TTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGM   83 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~~~-~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~   83 (129)
                      ..|+++.+++.| .|.+||..+. ..|.++ ++|..... |.++++|.+.. +.   |.|.|+++|.+..-  ..+. +.
T Consensus       243 ~~c~~~~~~~~C-~~~~g~~~~~~~~~~~~-~~C~~~~~-c~~~~~C~~~~-~~---~~C~C~~g~~g~~~--~~~~-~~  312 (487)
T KOG1217|consen  243 GTCVNTVGSYTC-RCPEGYTGDACVTCVDV-DSCALIAS-CPNGGTCVNVP-GS---YRCTCPPGFTGRLC--TECV-DV  312 (487)
T ss_pred             CcccccCCceee-eCCCCccccccceeeec-cccCCCCc-cCCCCeeecCC-Cc---ceeeCCCCCCCCCC--cccc-cc
Confidence            678888888999 9999999554 456677 88988643 88889999988 76   89999999998832  0122 33


Q ss_pred             CCCCCC----CCCCCCCCeec-cCCCCceeeeCCCCCccCCCccc
Q psy4097          84 SGNPCG----GVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        84 ~~~~C~----~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                        ..|.    ..+|..++.|. ......+.|.|..+|.|..|+..
T Consensus       313 --~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~  355 (487)
T KOG1217|consen  313 --DECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDS  355 (487)
T ss_pred             --ccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccC
Confidence              5663    35577766671 34445788999999999988754

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.24  E-value=8.8e-07  Score=43.08  Aligned_cols=32  Identities=34%  Similarity=0.778  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG   70 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~   70 (129)
                      +||....+.|..++.|+|+. |+   |.|.|++||.
T Consensus         3 dEC~~~~~~C~~~~~C~N~~-Gs---y~C~C~~Gy~   34 (42)
T PF07645_consen    3 DECAEGPHNCPENGTCVNTE-GS---YSCSCPPGYE   34 (42)
T ss_dssp             STTTTTSSSSSTTSEEEEET-TE---EEEEESTTEE
T ss_pred             cccCCCCCcCCCCCEEEcCC-CC---EEeeCCCCcE
Confidence            89998888898899999999 98   9999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=98.23  E-value=6.3e-07  Score=42.00  Aligned_cols=28  Identities=43%  Similarity=0.954  Sum_probs=22.9

Q ss_pred             CCCceeeeCCCceecccCCCCcccCCCCc
Q psy4097           2 TPYVECINTQGYRKCGQCPHGWVGDGTTC   30 (129)
Q Consensus         2 ~~~~~C~~~~g~~~C~~C~~g~~~~~~~C   30 (129)
                      +++|.|+++.++|.| .|.+||.++|..|
T Consensus         9 ~~nA~C~~~~~~~~C-~C~~Gy~GdG~~C   36 (36)
T PF12947_consen    9 HPNATCTNTGGSYTC-TCKPGYEGDGFFC   36 (36)
T ss_dssp             -TTCEEEE-TTSEEE-EE-CEEECCSTCE
T ss_pred             CCCcEeecCCCCEEe-ECCCCCccCCcCC
Confidence            578999999999999 9999999888765

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.15  E-value=1.1e-06  Score=42.79  Aligned_cols=30  Identities=30%  Similarity=0.961  Sum_probs=26.6

Q ss_pred             CCCCC--CCCCCCCeeccCCCCceeeeCCCCCc
Q psy4097          86 NPCGG--VTCEHGGICAPIGDRGYRCQCEPGFT  116 (129)
Q Consensus        86 ~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~  116 (129)
                      ++|..  +.|...+.| +|+.|+|.|.|++||.
T Consensus         3 dEC~~~~~~C~~~~~C-~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    3 DECAEGPHNCPENGTC-VNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             STTTTTSSSSSTTSEE-EEETTEEEEEESTTEE
T ss_pred             cccCCCCCcCCCCCEE-EcCCCCEEeeCCCCcE
Confidence            78873  569878899 9999999999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=98.12  E-value=6.1e-06  Score=38.72  Aligned_cols=35  Identities=37%  Similarity=0.955  Sum_probs=29.7

Q ss_pred             CCCCC-CCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          86 NPCGG-VTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        86 ~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      ++|.. .+|.+++.| .+..+.|.|.|+.||.|..|+
T Consensus         3 ~~C~~~~~C~~~~~C-~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           3 DECASGNPCQNGGTC-VNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             ccCCCCCCcCCCCEe-ECCCCCeEeECCCCCcCCcCC
Confidence            66765 688877899 888999999999999998774

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.98  E-value=6e-06  Score=34.95  Aligned_cols=22  Identities=32%  Similarity=0.815  Sum_probs=18.9

Q ss_pred             ceecccCCCCcc--cCCCCcccCCCC
Q psy4097          13 YRKCGQCPHGWV--GDGTTCRQGTTG   36 (129)
Q Consensus        13 ~~~C~~C~~g~~--~~~~~C~~~~~~   36 (129)
                      +|.| .|++||.  .++.+|+++ ||
T Consensus         1 sy~C-~C~~Gy~l~~d~~~C~DI-dE   24 (24)
T PF12662_consen    1 SYTC-SCPPGYQLSPDGRSCEDI-DE   24 (24)
T ss_pred             CEEe-eCCCCCcCCCCCCccccC-CC
Confidence            5899 9999999  577899998 65

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.96  E-value=3.7e-06  Score=39.38  Aligned_cols=32  Identities=53%  Similarity=1.129  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCC
Q psy4097          39 VQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGV   74 (129)
Q Consensus        39 ~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~   74 (129)
                      ...+.|+.++.|.++. ++   +.|.|.+||.|+|+
T Consensus         3 ~~~~~C~~nA~C~~~~-~~---~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen    3 ENNGGCHPNATCTNTG-GS---YTCTCKPGYEGDGF   34 (36)
T ss_dssp             TGGGGS-TTCEEEE-T-TS---EEEEE-CEEECCST
T ss_pred             CCCCCCCCCcEeecCC-CC---EEeECCCCCccCCc
Confidence            3355799999999999 87   99999999999976

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1225|consensus

Probab=97.93  E-value=2.9e-05  Score=56.81  Aligned_cols=78  Identities=35%  Similarity=0.912  Sum_probs=47.0

Q ss_pred             ecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCC
Q psy4097          15 KCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCE   94 (129)
Q Consensus        15 ~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~   94 (129)
                      +| .|++||.  +..|...  .|..   .|..++.+.+   +     .|.|.++|.|.     .|+ .   ..| +.+|.
T Consensus       266 ~C-IC~~Gf~--G~dC~e~--~Cp~---~cs~~g~~~~---g-----~CiC~~g~~G~-----dCs-~---~~c-padC~  319 (525)
T KOG1225|consen  266 RC-ICPPGFT--GDDCDEL--VCPV---DCSGGGVCVD---G-----ECICNPGYSGK-----DCS-I---RRC-PADCS  319 (525)
T ss_pred             eE-eCCCCCc--CCCCCcc--cCCc---ccCCCceecC---C-----EeecCCCcccc-----ccc-c---ccC-CccCC
Confidence            56 7777777  6666542  2432   2444433432   2     57788888777     665 3   234 35677


Q ss_pred             CCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          95 HGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        95 ~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      .++.| +  .+  +|.|.+||+|+.|...
T Consensus       320 g~G~C-i--~G--~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  320 GHGKC-I--DG--ECLCDEGYTGELCIQR  343 (525)
T ss_pred             CCCcc-c--CC--ceEeCCCCcCCccccc
Confidence            77777 4  22  6778888888777653

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.89  E-value=2.8e-05  Score=35.96  Aligned_cols=29  Identities=34%  Similarity=0.842  Sum_probs=24.6

Q ss_pred             CCCCCCCeeccCCCCceeeeCCCCCcc-CCCc
Q psy4097          91 VTCEHGGICAPIGDRGYRCQCEPGFTG-ESEL  121 (129)
Q Consensus        91 ~~C~~~~~C~~~~~~~~~C~C~~g~~g-~~c~  121 (129)
                      .+|.++ .| ++..+.|.|.|++||.| ..|+
T Consensus         6 ~~C~~~-~C-~~~~~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        6 GPCSNG-TC-INTPGSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCCC-EE-ECCCCCeEeECCCCCccCCccC
Confidence            578877 89 88899999999999999 6553

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.87  E-value=3.4e-05  Score=35.50  Aligned_cols=30  Identities=43%  Similarity=1.022  Sum_probs=25.3

Q ss_pred             CCCCCCCCeeccCCCCceeeeCCCCCccC-CC
Q psy4097          90 GVTCEHGGICAPIGDRGYRCQCEPGFTGE-SE  120 (129)
Q Consensus        90 ~~~C~~~~~C~~~~~~~~~C~C~~g~~g~-~c  120 (129)
                      ..+|.+++.| ++..+.|.|.|+.||.|. .|
T Consensus         5 ~~~C~~~~~C-~~~~~~~~C~C~~g~~g~~~C   35 (36)
T cd00053           5 SNPCSNGGTC-VNTPGSYRCVCPPGYTGDRSC   35 (36)
T ss_pred             CCCCCCCCEE-ecCCCCeEeECCCCCcccCCc
Confidence            4567777799 888899999999999998 55

>KOG4260|consensus

Probab=97.86  E-value=1.2e-05  Score=53.83  Aligned_cols=92  Identities=26%  Similarity=0.674  Sum_probs=60.0

Q ss_pred             CCceecccCCCCcccCCCCcccCC--------CCccCCCCCCCC--CCeeeeCCCCCcceeee-cCCCCCcCCCCCcCCc
Q psy4097          11 QGYRKCGQCPHGWVGDGTTCRQGT--------TGCSVQNGGCHP--LATCRETSDTVRSVISC-TCPPGMGGSGVGLMGC   79 (129)
Q Consensus        11 ~g~~~C~~C~~g~~~~~~~C~~~~--------~~C~~~~~~C~~--~~~C~~~~~g~~~~~~c-~c~~g~~g~~~~~~~c   79 (129)
                      .|+-+| .|.+||.  +..|..-.        ++-...-..|+.  .++|....  +   ..| .|..||.....   .|
T Consensus       165 ~GsGkC-kC~~GY~--Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~--~---k~C~kCkkGW~lde~---gC  233 (350)
T KOG4260|consen  165 EGSGKC-KCETGYT--GPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGES--S---KGCSKCKKGWKLDEE---GC  233 (350)
T ss_pred             CCCCcc-cccCCCC--CccccccchHHHHhhcccccchhhhhhhhhhcccCCCC--C---CChhhhcccceeccc---cc
Confidence            367789 9999999  77764310        110000001221  12343222  1   345 68889875533   68


Q ss_pred             ccCCCCCCCC--CCCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          80 AYGMSGNPCG--GVTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        80 ~~~~~~~~C~--~~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      . ++  |+|.  +.+|.....| +|+.++|.|.+.+||.+
T Consensus       234 v-Dv--nEC~~ep~~c~~~qfC-vNteGSf~C~dk~Gy~~  269 (350)
T KOG4260|consen  234 V-DV--NECQNEPAPCKAHQFC-VNTEGSFKCEDKEGYKK  269 (350)
T ss_pred             c-cH--HHHhcCCCCCChhhee-ecCCCceEecccccccC
Confidence            8 88  9997  5789888899 99999999999999975

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.49  E-value=0.00023  Score=33.46  Aligned_cols=33  Identities=33%  Similarity=0.785  Sum_probs=26.9

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc-CC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG-GS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~-g~   72 (129)
                      ++|... .+|.+++.|.++. ++   |.|.|+.+|. +.
T Consensus         3 ~~C~~~-~~C~~~~~C~~~~-g~---~~C~C~~g~~~g~   36 (39)
T smart00179        3 DECASG-NPCQNGGTCVNTV-GS---YRCECPPGYTDGR   36 (39)
T ss_pred             ccCcCC-CCcCCCCEeECCC-CC---eEeECCCCCccCC
Confidence            677762 4898888999988 77   9999999998 55

>KOG1225|consensus

Probab=97.48  E-value=0.00065  Score=49.98  Aligned_cols=79  Identities=37%  Similarity=0.988  Sum_probs=55.0

Q ss_pred             ecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCC
Q psy4097          15 KCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCE   94 (129)
Q Consensus        15 ~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~   94 (129)
                      .| .|..+|.  +..|..  -.|..   .|...+.|..   |     .|.|++||.|.     .|. .   -.|... |.
T Consensus       235 ic-~c~~~~~--g~~c~~--~~C~~---~c~~~g~c~~---G-----~CIC~~Gf~G~-----dC~-e---~~Cp~~-cs  288 (525)
T KOG1225|consen  235 IC-ECPEGYF--GPLCST--IYCPG---GCTGRGQCVE---G-----RCICPPGFTGD-----DCD-E---LVCPVD-CS  288 (525)
T ss_pred             ee-ecCCcee--CCcccc--ccCCC---CCcccceEeC---C-----eEeCCCCCcCC-----CCC-c---ccCCcc-cC
Confidence            57 7888887  666763  34543   4555556653   3     59999999999     886 4   356443 77


Q ss_pred             CCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          95 HGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        95 ~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .++.+   ..+  .|.|++||.|+.|+...
T Consensus       289 ~~g~~---~~g--~CiC~~g~~G~dCs~~~  313 (525)
T KOG1225|consen  289 GGGVC---VDG--ECICNPGYSGKDCSIRR  313 (525)
T ss_pred             CCcee---cCC--EeecCCCcccccccccc
Confidence            76566   333  89999999999997544

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.35  E-value=0.00016  Score=33.78  Aligned_cols=25  Identities=48%  Similarity=1.127  Sum_probs=19.3

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTC   30 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C   30 (129)
                      ..|++++++|.| .|++||.  .|+.+|
T Consensus        10 h~C~~~~g~~~C-~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen   10 HICVNTPGSYRC-SCPPGYKLAEDGRTC   36 (36)
T ss_dssp             SEEEEETTSEEE-E-STTEEE-TTSSSE
T ss_pred             CCCccCCCceEe-ECCCCCEECcCCCCC
Confidence            468999999999 9999998  444444

...

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.15  E-value=0.00023  Score=32.32  Aligned_cols=27  Identities=33%  Similarity=0.776  Sum_probs=22.3

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      +|.++++|+... ..  .|.|.|++||.|.
T Consensus         5 ~C~n~g~C~~~~-~~--~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLP-GG--GYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEES-TS--EEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCC-CC--CEEeECCCCCccC
Confidence            899999999765 22  3999999999875

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=97.14  E-value=0.00019  Score=25.86  Aligned_cols=13  Identities=54%  Similarity=1.262  Sum_probs=10.4

Q ss_pred             eeeCCCCCccCCC
Q psy4097         108 RCQCEPGFTGESE  120 (129)
Q Consensus       108 ~C~C~~g~~g~~c  120 (129)
                      .|+|++||.|..|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4899999999876

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.92  E-value=0.002  Score=29.77  Aligned_cols=33  Identities=33%  Similarity=0.801  Sum_probs=26.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++|... .+|.+++.|.+.. +.   |.|.|+.+|.+.
T Consensus         3 ~~C~~~-~~C~~~~~C~~~~-~~---~~C~C~~g~~g~   35 (38)
T cd00054           3 DECASG-NPCQNGGTCVNTV-GS---YRCSCPPGYTGR   35 (38)
T ss_pred             ccCCCC-CCcCCCCEeECCC-CC---eEeECCCCCcCC
Confidence            567652 3788888999888 76   999999999876

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=96.82  E-value=0.0013  Score=39.15  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=28.4

Q ss_pred             CCCCCCCeec-cCCCCceeeeCCCCCccCCCccccccc
Q psy4097          91 VTCEHGGICA-PIGDRGYRCQCEPGFTGESELLVPLLS  127 (129)
Q Consensus        91 ~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~~~~~  127 (129)
                      +.|.++ .|+ ......+.|.|..||.|++||...++.
T Consensus        51 ~YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~dLl~   87 (139)
T PHA03099         51 GYCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHVVLVD   87 (139)
T ss_pred             CEeECC-EEEeeccCCCceeECCCCcccccccceeeee
Confidence            568776 785 455678899999999999999876543

>PHA02887 EGF-like protein; Provisional

Probab=96.49  E-value=0.0036  Score=36.77  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=28.3

Q ss_pred             CCCC---CCCCCCCCeec-cCCCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCG---GVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~---~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .+|.   .+.|.++ .|. ........|.|+.||.|.+|+.+.
T Consensus        84 ~pC~~eyk~YCiHG-~C~yI~dL~epsCrC~~GYtG~RCE~vs  125 (126)
T PHA02887         84 EKCKNDFNDFCING-ECMNIIDLDEKFCICNKGYTGIRCDEVS  125 (126)
T ss_pred             cccChHhhCEeeCC-EEEccccCCCceeECCCCcccCCCCccc
Confidence            5665   2567765 884 345677899999999999998653

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=96.48  E-value=0.00072  Score=43.04  Aligned_cols=100  Identities=24%  Similarity=0.528  Sum_probs=60.4

Q ss_pred             eeeCCCceecccCCCCcc-cCCCCcccCCCCccC---CCCCCCCCCeeeeCCC-CCcceeeecCCCCCcCCCCCcCCccc
Q psy4097           7 CINTQGYRKCGQCPHGWV-GDGTTCRQGTTGCSV---QNGGCHPLATCRETSD-TVRSVISCTCPPGMGGSGVGLMGCAY   81 (129)
Q Consensus         7 C~~~~g~~~C~~C~~g~~-~~~~~C~~~~~~C~~---~~~~C~~~~~C~~~~~-g~~~~~~c~c~~g~~g~~~~~~~c~~   81 (129)
                      .+.....|.| .|.+||. .+..+|+.. .+|..   ...+|...+.|.+... +....|.|.|..+|....-   .|. 
T Consensus        13 LiQMSNHfEC-~Cnegfvl~~EntCE~k-v~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~---vCv-   86 (197)
T PF06247_consen   13 LIQMSNHFEC-KCNEGFVLKNENTCEEK-VECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG---VCV-   86 (197)
T ss_dssp             EEEESSEEEE-EESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS---SEE-
T ss_pred             EEEccCceEE-EcCCCcEEccccccccc-eecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC---eEc-
Confidence            3444567999 9999998 667899887 66654   2346888889987651 1112489999999975422   465 


Q ss_pred             CCCCCCCCCCCCCCCCeecc--CCCCceeeeCCCCCc
Q psy4097          82 GMSGNPCGGVTCEHGGICAP--IGDRGYRCQCEPGFT  116 (129)
Q Consensus        82 ~~~~~~C~~~~C~~~~~C~~--~~~~~~~C~C~~g~~  116 (129)
                      .   +.|....|..+ .|++  .......|.|.-|+.
T Consensus        87 p---~~C~~~~Cg~G-KCI~d~~~~~~~~CSC~IGkV  119 (197)
T PF06247_consen   87 P---NKCNNKDCGSG-KCILDPDNPNNPTCSCNIGKV  119 (197)
T ss_dssp             E---GGGSS---TTE-EEEEEEGGGSEEEEEE-TEEE
T ss_pred             h---hhcCceecCCC-eEEecCCCCCCceeEeeeceE
Confidence            3   46766678744 8842  223345899998887

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.41  E-value=0.0074  Score=27.52  Aligned_cols=25  Identities=44%  Similarity=1.022  Sum_probs=21.2

Q ss_pred             CCCCCCCeeeeCCCCCcceeeecCCCCCcC
Q psy4097          42 GGCHPLATCRETSDTVRSVISCTCPPGMGG   71 (129)
Q Consensus        42 ~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g   71 (129)
                      .+|.++ +|.+.. +.   +.|.|+.||.+
T Consensus         6 ~~C~~~-~C~~~~-~~---~~C~C~~g~~g   30 (35)
T smart00181        6 GPCSNG-TCINTP-GS---YTCSCPPGYTG   30 (35)
T ss_pred             CCCCCC-EEECCC-CC---eEeECCCCCcc
Confidence            378877 899887 76   99999999987

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.31  E-value=0.0059  Score=27.64  Aligned_cols=21  Identities=38%  Similarity=0.899  Sum_probs=18.9

Q ss_pred             CCceeeeCCCceecccCCCCcc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWV   24 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~   24 (129)
                      +++.|+++.+.|.| .|+.||.
T Consensus        10 ~~~~C~~~~~~~~C-~C~~g~~   30 (36)
T cd00053          10 NGGTCVNTPGSYRC-VCPPGYT   30 (36)
T ss_pred             CCCEEecCCCCeEe-ECCCCCc
Confidence            45889999999999 9999998

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=96.09  E-value=0.0029  Score=29.49  Aligned_cols=25  Identities=40%  Similarity=1.006  Sum_probs=18.8

Q ss_pred             CCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          92 TCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        92 ~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      .|.+  .| ++.+++|+|.|++||....
T Consensus         7 gC~h--~C-~~~~g~~~C~C~~Gy~L~~   31 (36)
T PF14670_consen    7 GCSH--IC-VNTPGSYRCSCPPGYKLAE   31 (36)
T ss_dssp             GSSS--EE-EEETTSEEEE-STTEEE-T
T ss_pred             CcCC--CC-ccCCCceEeECCCCCEECc
Confidence            4655  79 8889999999999997544

...

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.00  E-value=0.013  Score=26.55  Aligned_cols=26  Identities=35%  Similarity=0.791  Sum_probs=20.5

Q ss_pred             CCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          92 TCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        92 ~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                      .|..+++| +..  ..+|.|.+||.|..|
T Consensus         7 ~C~~~G~C-~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTC-VSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEE-eCC--CCEEECCCCCcCCCC
Confidence            57777899 544  458999999999876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1226|consensus

Probab=95.69  E-value=0.075  Score=40.88  Aligned_cols=90  Identities=30%  Similarity=0.706  Sum_probs=50.2

Q ss_pred             CCceecc--cCCCCcccCCCCcccC---------CCCccCC--CCCCCCCCeeeeCCCCCcceeeecCCCCCc----CCC
Q psy4097          11 QGYRKCG--QCPHGWVGDGTTCRQG---------TTGCSVQ--NGGCHPLATCRETSDTVRSVISCTCPPGMG----GSG   73 (129)
Q Consensus        11 ~g~~~C~--~C~~g~~~~~~~C~~~---------~~~C~~~--~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~----g~~   73 (129)
                      .|.+.|+  .|.+||.  |..|+=.         .+.|...  ..+|...+.|.-   |     +|.|.+...    |. 
T Consensus       472 ~G~~~CG~C~C~~G~~--G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~C---G-----qC~C~~~~~~~i~G~-  540 (783)
T KOG1226|consen  472 NGTFVCGQCRCDEGWL--GKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVC---G-----QCVCHKPDNGKIYGK-  540 (783)
T ss_pred             CCcEEecceecCCCCC--CCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeC---C-----ceEecCCCCCceeee-
Confidence            4555443  8999999  7766522         0223221  115666666642   2     466666544    44 


Q ss_pred             CCcCCcccCCCCCCCCC---CCCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          74 VGLMGCAYGMSGNPCGG---VTCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        74 ~~~~~c~~~~~~~~C~~---~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                          .|+ -.- -.|..   ..|..++.|   .-|  +|.|.+||+|..|+-
T Consensus       541 ----fCE-CDn-fsC~r~~g~lC~g~G~C---~CG--~CvC~~GwtG~~C~C  581 (783)
T KOG1226|consen  541 ----FCE-CDN-FSCERHKGVLCGGHGRC---ECG--RCVCNPGWTGSACNC  581 (783)
T ss_pred             ----eee-ccC-cccccccCcccCCCCeE---eCC--cEEcCCCCccCCCCC
Confidence                565 320 23332   346655567   222  689999999999873

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=95.40  E-value=0.0063  Score=38.85  Aligned_cols=104  Identities=25%  Similarity=0.652  Sum_probs=58.7

Q ss_pred             CceeeeCC-----CceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCC
Q psy4097           4 YVECINTQ-----GYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMG   78 (129)
Q Consensus         4 ~~~C~~~~-----g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~   78 (129)
                      .+.|++..     ..|.| .|.+||......|..  +.|...  .|. .+.|+..+ .......|+|.-|+...  ....
T Consensus        55 ya~C~~~~~~~~~~~~~C-~C~~gY~~~~~vCvp--~~C~~~--~Cg-~GKCI~d~-~~~~~~~CSC~IGkV~~--dn~k  125 (197)
T PF06247_consen   55 YAKCINQANKGEERAYKC-DCINGYILKQGVCVP--NKCNNK--DCG-SGKCILDP-DNPNNPTCSCNIGKVPD--DNKK  125 (197)
T ss_dssp             TEEEEE-SSTTSSTSEEE-EE-TTEEESSSSEEE--GGGSS-----T-TEEEEEEE-GGGSEEEEEE-TEEETT--TTTE
T ss_pred             hhhhhcCCCcccceeEEE-ecccCceeeCCeEch--hhcCce--ecC-CCeEEecC-CCCCCceeEeeeceEec--cCCc
Confidence            46777665     36999 999999976677865  467655  777 46787544 22123689998887711  1113


Q ss_pred             cccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          79 CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        79 c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      |. .....+|. --|.....| -...+-|.|.|..++.+..
T Consensus       126 Ct-k~G~T~C~-LKCk~nE~C-K~~~~~Y~C~~~~~~~~~~  163 (197)
T PF06247_consen  126 CT-KTGETKCS-LKCKENEEC-KLVDGYYKCVCKEGFPGDG  163 (197)
T ss_dssp             SE-EEE---------TTTEEE-EEETTEEEEEE-TT-EEET
T ss_pred             cc-CCCcccee-eecCCCcce-eeeCcEEEeecCCCCCCCC
Confidence            44 22113453 246677789 8888999999999986444

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.27  E-value=0.0074  Score=28.15  Aligned_cols=28  Identities=25%  Similarity=0.700  Sum_probs=21.5

Q ss_pred             CCCceeeeCC-CceecccCCCCcccCCCCc
Q psy4097           2 TPYVECINTQ-GYRKCGQCPHGWVGDGTTC   30 (129)
Q Consensus         2 ~~~~~C~~~~-g~~~C~~C~~g~~~~~~~C   30 (129)
                      ..+|.|++.. |...| .|..||..++..|
T Consensus         8 P~NA~C~~~~dG~eec-rCllgyk~~~~~C   36 (37)
T PF12946_consen    8 PANAGCFRYDDGSEEC-RCLLGYKKVGGKC   36 (37)
T ss_dssp             -TTEEEEEETTSEEEE-EE-TTEEEETTEE
T ss_pred             CCCcccEEcCCCCEEE-EeeCCccccCCCc
Confidence            3578898887 89999 9999999666555

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG0994|consensus

Probab=94.50  E-value=0.15  Score=41.30  Aligned_cols=55  Identities=25%  Similarity=0.573  Sum_probs=33.3

Q ss_pred             eee-cCCCCCcCCCCCcCCcccCCCCCCCCCCCCC--------CCCeec-cCCCCceeeeCCCCCccCCCcc
Q psy4097          61 ISC-TCPPGMGGSGVGLMGCAYGMSGNPCGGVTCE--------HGGICA-PIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        61 ~~c-~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~--------~~~~C~-~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      +.| +|..||.|++..   -. .   ..|.+-||.        +...|. -+......|.|.+||.|.+|+.
T Consensus       885 ~~CdrCl~GyyGdP~l---g~-g---~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~  949 (1758)
T KOG0994|consen  885 HSCDRCLDGYYGDPRL---GS-G---IGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI  949 (1758)
T ss_pred             cchhhhhccccCCccc---CC-C---CCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhh
Confidence            778 899999988652   11 1   233322332        222341 1234556799999999999874

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=94.18  E-value=0.077  Score=35.05  Aligned_cols=36  Identities=22%  Similarity=0.621  Sum_probs=27.9

Q ss_pred             CcccCCCCCCCC--CCCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          78 GCAYGMSGNPCG--GVTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        78 ~c~~~~~~~~C~--~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      .|. +.  ++|.  .++|.+  .| .+..++|.|.|+.||....
T Consensus       183 ~C~-~~--~~C~~~~~~c~~--~C-~~~~g~~~c~c~~g~~~~~  220 (224)
T cd01475         183 ICV-VP--DLCATLSHVCQQ--VC-ISTPGSYLCACTEGYALLE  220 (224)
T ss_pred             cCc-Cc--hhhcCCCCCccc--eE-EcCCCCEEeECCCCccCCC
Confidence            566 55  7786  355765  69 9999999999999997643

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.77  E-value=0.079  Score=34.98  Aligned_cols=40  Identities=23%  Similarity=0.497  Sum_probs=32.0

Q ss_pred             CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          26 DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        26 ~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      .+..|.+. ++|...++.|.  ..|.++. |+   |.|.|..||...
T Consensus       180 ~~~~C~~~-~~C~~~~~~c~--~~C~~~~-g~---~~c~c~~g~~~~  219 (224)
T cd01475         180 QGKICVVP-DLCATLSHVCQ--QVCISTP-GS---YLCACTEGYALL  219 (224)
T ss_pred             ccccCcCc-hhhcCCCCCcc--ceEEcCC-CC---EEeECCCCccCC
Confidence            35678877 89987766776  4699998 88   999999999754

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>smart00051 DSL delta serrate ligand

Probab=93.44  E-value=0.21  Score=26.29  Aligned_cols=46  Identities=24%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             eeecCCCCCcCCCCCcCCcccCCCCCCCCC-CCCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          61 ISCTCPPGMGGSGVGLMGCAYGMSGNPCGG-VTCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        61 ~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                      +.-.|..+|.|.     .|.     ..|.. +.+..+..| .. .|  .+.|.+||.|..|
T Consensus        17 ~rv~C~~~~yG~-----~C~-----~~C~~~~d~~~~~~C-d~-~G--~~~C~~Gw~G~~C   63 (63)
T smart00051       17 IRVTCDENYYGE-----GCN-----KFCRPRDDFFGHYTC-DE-NG--NKGCLEGWMGPYC   63 (63)
T ss_pred             EEeeCCCCCcCC-----ccC-----CEeCcCccccCCccC-Cc-CC--CEecCCCCcCCCC
Confidence            445788888888     776     44542 234445567 33 33  4689999999876

>KOG1836|consensus

Probab=92.41  E-value=0.41  Score=40.61  Aligned_cols=56  Identities=30%  Similarity=0.607  Sum_probs=35.0

Q ss_pred             ee-cCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeec-cCCCCceeee-CCCCCccCCCcccc
Q psy4097          62 SC-TCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICA-PIGDRGYRCQ-CEPGFTGESELLVP  124 (129)
Q Consensus        62 ~c-~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~-~~~~~~~~C~-C~~g~~g~~c~~~~  124 (129)
                      .| +|..||.+....      ... +.|..=+|..+..|. +.....+.|. |++||+|.+|+...
T Consensus       757 ~C~~C~~GfYg~~~~------~~~-~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~  815 (1705)
T KOG1836|consen  757 QCAQCVDGFYGLPDL------GTS-GDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA  815 (1705)
T ss_pred             chhhhcCCCCCcccc------CCC-CCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence            45 688888776331      110 226555666665662 2225667898 99999999998543

>KOG3516|consensus

Probab=91.05  E-value=0.22  Score=40.28  Aligned_cols=36  Identities=33%  Similarity=0.819  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCC-CCCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCE-PGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~  122 (129)
                      +.|.+++|++++.| ..+...|.|.|. .||.|..|..
T Consensus       546 drClPN~CehgG~C-~Qs~~~f~C~C~~TGY~GatCHt  582 (1306)
T KOG3516|consen  546 DRCLPNPCEHGGKC-SQSWDDFECNCELTGYKGATCHT  582 (1306)
T ss_pred             cccCCccccCCCcc-cccccceeEeccccccccccccC
Confidence            78889999999999 778889999998 7999999874

>KOG3514|consensus

Probab=86.23  E-value=0.61  Score=37.77  Aligned_cols=35  Identities=31%  Similarity=0.771  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCeeccCCCCceeeeCCC-CCccCCCcc
Q psy4097          87 PCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGESELL  122 (129)
Q Consensus        87 ~C~~~~C~~~~~C~~~~~~~~~C~C~~-g~~g~~c~~  122 (129)
                      .|.++||.+++.| ....+.|.|.|.. +|.|..|+.
T Consensus       625 ~C~~nPC~N~g~C-~egwNrfiCDCs~T~~~G~~Cer  660 (1591)
T KOG3514|consen  625 ICESNPCQNGGKC-SEGWNRFICDCSGTGFEGRTCER  660 (1591)
T ss_pred             ccCCCcccCCCCc-cccccccccccccCcccCccccc
Confidence            6888999999999 8888999999964 899999974

>KOG1226|consensus

Probab=85.76  E-value=4.1  Score=31.98  Aligned_cols=63  Identities=30%  Similarity=0.720  Sum_probs=36.3

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCccc-CCCCCCCCC---CCCCCCCeeccCCCCceeeeCCCC-Ccc
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAY-GMSGNPCGG---VTCEHGGICAPIGDRGYRCQCEPG-FTG  117 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~-~~~~~~C~~---~~C~~~~~C~~~~~~~~~C~C~~g-~~g  117 (129)
                      .|..+++|.-   |     .|+|.+||.|.     .|.- ... +.|.+   .-|...+.| .=  +  +|+|... |.|
T Consensus       556 lC~g~G~C~C---G-----~CvC~~GwtG~-----~C~C~~st-d~C~~~~G~iCSGrG~C-~C--g--~C~C~~~~~sG  616 (783)
T KOG1226|consen  556 LCGGHGRCEC---G-----RCVCNPGWTGS-----ACNCPLST-DTCESSDGQICSGRGTC-EC--G--RCKCTDPPYSG  616 (783)
T ss_pred             ccCCCCeEeC---C-----cEEcCCCCccC-----CCCCCCCC-ccccCCCCceeCCCcee-eC--C--ceEcCCCCcCc
Confidence            4666666653   2     58999999998     5531 111 45542   224444445 11  1  4666655 888


Q ss_pred             CCCcccc
Q psy4097         118 ESELLVP  124 (129)
Q Consensus       118 ~~c~~~~  124 (129)
                      ..|+..+
T Consensus       617 ~~CE~cp  623 (783)
T KOG1226|consen  617 EFCEKCP  623 (783)
T ss_pred             chhhcCC
Confidence            8887543

>KOG0994|consensus

Probab=83.65  E-value=6.3  Score=32.79  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=14.1

Q ss_pred             eeeeCCCCCccCCCccc
Q psy4097         107 YRCQCEPGFTGESELLV  123 (129)
Q Consensus       107 ~~C~C~~g~~g~~c~~~  123 (129)
                      -.|.|++++.|.+|+.+
T Consensus       530 GqC~CRe~~~GR~c~~~  546 (1758)
T KOG0994|consen  530 GQCECREHMLGRRCEQV  546 (1758)
T ss_pred             Ccccccccccccccccc
Confidence            37999999999998743

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation

Probab=82.90  E-value=2.2  Score=24.88  Aligned_cols=31  Identities=32%  Similarity=0.829  Sum_probs=22.9

Q ss_pred             CCCC-CCCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          86 NPCG-GVTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        86 ~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      +.|. -..|...+.| .. .....|.|.+||..+
T Consensus        78 d~Cd~y~~CG~~g~C-~~-~~~~~C~Cl~GF~P~  109 (110)
T PF00954_consen   78 DQCDVYGFCGPNGIC-NS-NNSPKCSCLPGFEPK  109 (110)
T ss_pred             cCCCCccccCCccEe-CC-CCCCceECCCCcCCC
Confidence            6776 3679888899 43 345579999999754

This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	5e-12
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-09
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	3e-05
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	4e-05
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	1e-04

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 60.4 bits (146), Expect = 5e-12
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 3   PYVECINT-QGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
           P  +C +   G   CG CP G++G+GT C +    C++    C   +      +T     
Sbjct: 13  PGAQCSSFPDGSWSCGFCPVGFLGNGTHC-EDLDECALVPDICFSTSKVPRCVNTQPGFH 71

Query: 62  SCTCPPGMGGSGVGLMGCAYGMS-------GNPC--GGVTCEHGGICAPIG---DRGYRC 109
              CPP   G+    +G     +        NPC      C     C  +G   D  Y+C
Sbjct: 72  CLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKC 131

Query: 110 QCEPGFTG 117
           +C+ G+ G
Sbjct: 132 ECQTGYAG 139

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 23/116 (19%), Positives = 31/116 (26%), Gaps = 13/116 (11%)

Query: 3   PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTT------------GCSVQNGGCHPLATC 50
               C+NTQ    C  CP  + G+                      C  +   CH  A C
Sbjct: 59  KVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAEC 118

Query: 51  RETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRG 106
                    +  C C  G  G G+     +    G P   + C        I D  
Sbjct: 119 IYLGHFSDPMYKCECQTGYAGDGLICGEDSDL-DGWPNLNLVCATNATYHCIKDNC 173

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 85  GNPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGE 118
            NPC    C++ G C   G   Y+C C   GF GE
Sbjct: 1   ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE 35

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 6  ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
           C       +  +C  G+   G  C   +  C   NGGC P A C       +  + C C
Sbjct: 23 ACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDD---KKEVECKC 79

Query: 66 PPGMGGSGVGLMGCAYG 82
                     + C+  
Sbjct: 80 TKEGSEPLFEGVFCSSS 96

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 86  NPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGES 119
           NPC    C+H GIC   G   Y+C C   G++G +
Sbjct: 3   NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPN 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.84
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.79
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.72
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.71
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.67
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.64
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.56
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.54
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.5
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.49
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.46
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.39
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.33
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.31
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.3
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.27
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.23
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.23
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.22
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.22
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.22
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.21
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.21
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.16
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.15
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.12
2vh0_B	134	Activated factor XA light chain; serine protease,	99.1
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.1
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.05
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.0
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.99
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.99
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.92
2vh0_B	134	Activated factor XA light chain; serine protease,	98.91
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.91
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.91
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.9
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.89
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.89
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.87
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.86
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.85
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.83
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.76
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.72
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.71
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.67
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.67
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.67
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.66
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.56
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.56
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.55
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.52
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.51
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.47
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.47
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.41
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.37
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.31
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.29
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.26
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.25
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.19
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.11
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	98.11
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.09
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.03
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.03
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.88
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.86
1ob1_C	99	Major merozoite surface protein; immune system, im	97.84
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.83
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.81
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.75
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.68
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.67
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.66
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.64
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.62
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.59
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.58
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.58
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.53
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.53
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.51
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.48
1ob1_C	99	Major merozoite surface protein; immune system, im	97.43
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	97.4
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.39
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.36
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.26
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.24
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.24
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.22
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	97.2
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.1
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.89
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	96.88
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.8
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.67
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.62
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.52
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.48
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.38
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	96.37
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.28
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.25
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.2
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.8
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	95.6
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.52
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	95.44
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	95.36
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.31
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	95.15
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.07
1szb_A	170	Mannose binding lectin-associated serine protease-	94.81
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	94.76
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	94.42
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	94.35
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.26
2wph_E	59	Coagulation factor IXA light chain; serine proteas	93.65
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	92.9
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.69
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	92.28
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	91.99
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	91.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.83
1nzi_A	159	Complement C1S component; calcium, innate immunity	91.65
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	91.51
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	91.18
1szb_A	170	Mannose binding lectin-associated serine protease-	91.02
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	90.58
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	90.13
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	87.82
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	85.36
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	85.09
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	83.15

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.84  E-value=2e-20  Score=113.43  Aligned_cols=103  Identities=32%  Similarity=0.727  Sum_probs=91.1

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcc-cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCccc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCR-QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAY   81 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~-~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~   81 (129)
                      .+++|+++.++|.| .|.+||.  +..|+ ++ ++|...  +|.++++|++.. ++   |.|.|++||.|.     .|+.
T Consensus        17 ~~g~C~~~~g~~~C-~C~~Gy~--G~~C~~~~-~~C~~~--~C~~~~~C~~~~-g~---~~C~C~~G~~G~-----~C~~   81 (135)
T 2vj3_A           17 HAGKCINTLGSFEC-QCLQGYT--GPRCEIDV-NECVSN--PCQNDATCLDQI-GE---FQCICMPGYEGV-----HCEV   81 (135)
T ss_dssp             TTCEEEECSSSEEE-ECCTTEE--STTSCEEC-CTTTTC--CCCSSCEEEECS-SC---EEEECCTTEESS-----SSCE
T ss_pred             CCCEeECCCCCEEE-ECCCCCc--CCcccccC-ccCCCC--CCCCCCEEeCCC-CC---ceeeCCCCCcCC-----ccee
Confidence            46899999999999 9999999  88896 55 899876  899999999988 77   999999999988     7862


Q ss_pred             CCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          82 GMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        82 ~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      ++  ++|...+|.+++.| ++..++|+|.|++||.|..|+..
T Consensus        82 ~~--~~C~~~~C~~~g~C-~~~~g~~~C~C~~G~~G~~C~~~  120 (135)
T 2vj3_A           82 NT--DECASSPCLHNGRC-LDKINEFQCECPTGFTGHLCQVD  120 (135)
T ss_dssp             EC--CTTTTCCSTTTCEE-EECSSCEEEECCTTEESSSSCEE
T ss_pred             cC--CcccCCCcCCCCEe-ECCCCCeEEECCCCCcCCccCcc
Confidence            45  89988899998999 88899999999999999999743

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.8e-19  Score=109.28  Aligned_cols=105  Identities=30%  Similarity=0.683  Sum_probs=84.3

Q ss_pred             CCceeeeCC--CceecccCCCCcccCCCCcccC------------CCCccCCCCCCCCCCeee-------eCCCCCccee
Q psy4097           3 PYVECINTQ--GYRKCGQCPHGWVGDGTTCRQG------------TTGCSVQNGGCHPLATCR-------ETSDTVRSVI   61 (129)
Q Consensus         3 ~~~~C~~~~--g~~~C~~C~~g~~~~~~~C~~~------------~~~C~~~~~~C~~~~~C~-------~~~~g~~~~~   61 (129)
                      .+++|+++.  ++|.| .|++||+  +..|+.+            .++|...  +|.++++|+       ++. ++   |
T Consensus        10 ~~g~C~~~~~~g~~~C-~C~~G~~--G~~C~~~~~~~~~~~~c~~~~~C~~~--~C~~~g~C~~~~~~~~~~~-~~---~   80 (143)
T 4d90_A           10 NGGICLPGLADGSFSC-ECPDGFT--DPNCSSVVEVASDEEEPTSAGPCTPN--PCHNGGTCEISEAYRGDTF-IG---Y   80 (143)
T ss_dssp             GGCEEEC-----CCEE-ECCTTCC--TTTTCSCCCCTTTTTSCCCCCTTSSC--CCCTTCEEEECCCEETTEE-CC---E
T ss_pred             CCCEeeCCCCCCCEEe-ECCCCCC--CCCCccCccccccccccccCCcCCCC--CCCCCCEecCCCccccCCC-CC---e
Confidence            467898876  68999 9999999  7777642            2667655  899999998       444 55   9


Q ss_pred             eecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          62 SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        62 ~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .|.|++||.|.     .|+.++  ++|..++|.+++.| ++..++|+|.|++||.|+.++...
T Consensus        81 ~C~C~~G~~G~-----~C~~~i--~~C~~~~C~~~~~C-~~~~g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           81 VCKCPRGFNGI-----HCQHNI--NECEVEPCKNGGIC-TDLVANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             EEECCTTEEST-----TSCEEC--CTTTTCCSCTTCEE-EEETTEEEEECCTTCBSTTSCBC-
T ss_pred             EeECcCCCcCC-----CcccCC--CcCCCCCCCCCCEe-ECCCCCeEeECCCCCccCCceecC
Confidence            99999999988     885245  89998899999999 899999999999999999998644

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.72  E-value=3.9e-18  Score=104.27  Aligned_cols=106  Identities=23%  Similarity=0.623  Sum_probs=84.9

Q ss_pred             CCceeeeCCCceecccCCCCcccC-------CCCcccCCCCccCCC-CCCCCCCeeeeCCCCCcceeeecCCCCCcCCCC
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGD-------GTTCRQGTTGCSVQN-GGCHPLATCRETSDTVRSVISCTCPPGMGGSGV   74 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~-------~~~C~~~~~~C~~~~-~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~   74 (129)
                      .+++|+++   |.| .|.+||.++       +..|+++ ++|.... .+|.++++|+++. ++   |.|.|++||.+...
T Consensus        11 ~~~~C~~~---~~C-~C~~G~~g~~~~~~~~~~~C~di-deC~~~~~~~C~~~~~C~n~~-g~---y~C~C~~Gy~g~~~   81 (143)
T 2bou_A           11 QDSSCVNA---TAC-RCNPGFSSFSEIITTPMETCDDI-NECATLSKVSCGKFSDCWNTE-GS---YDCVCSPGYEPVSG   81 (143)
T ss_dssp             TTEEESSS---SCE-EECTTEECSSSSBCSTTCCCEEC-CGGGC----CCCTTEEEEECS-SC---EEEEECTTEEETTC
T ss_pred             CCCEEcCC---CEE-eCCCCCcCccccccCCCCcCCcc-ccccCCCCCCCCCCCEEEcCC-CC---eEeECCCCcccCcC
Confidence            56788774   899 999999943       3689888 9998743 3799889999998 87   99999999987521


Q ss_pred             C-------cCCcccCCCCCCCC--CCCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          75 G-------LMGCAYGMSGNPCG--GVTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        75 ~-------~~~c~~~~~~~~C~--~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      .       ...|. ++  ++|.  .++|.+++.| ++..++|+|.|++||.|....
T Consensus        82 ~~~~~~~~~~~C~-di--deC~~~~~~C~~~~~C-~n~~g~y~C~C~~Gy~g~~~~  133 (143)
T 2bou_A           82 AKTFKNESENTCQ-DV--DECSSGQHQCDSSTVC-FNTVGSYSCRCRPGWKPRHGI  133 (143)
T ss_dssp             CSCBSSGGGCCEE-EC--CHHHHTCCCCCTTSEE-EECSSCEEEECCSSSCBCTTC
T ss_pred             ccccccCCCCCcC-Cc--cCccCcCCCCCCCCEE-ECCCCCEEeeCCCCcccCCCC
Confidence            0       11577 77  8897  4789988899 999999999999999988753

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.71  E-value=4.3e-17  Score=119.12  Aligned_cols=110  Identities=28%  Similarity=0.667  Sum_probs=91.1

Q ss_pred             CCceeeeCCC-ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCC---eeeeCCCCCcceeeec-CCCCCcCCCCC--
Q psy4097           3 PYVECINTQG-YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLA---TCRETSDTVRSVISCT-CPPGMGGSGVG--   75 (129)
Q Consensus         3 ~~~~C~~~~g-~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~---~C~~~~~g~~~~~~c~-c~~g~~g~~~~--   75 (129)
                      +++.|+++.+ +|.|+.|++||++++..|+++ ++|...++.|.+++   +|+++. ++   |.|. |++||.+....  
T Consensus        13 ~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeDi-DEC~~~p~~C~~gg~~~~CvNt~-gs---Y~C~~C~~Gy~G~~c~g~   87 (634)
T 1yo8_A           13 PGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL-DECALVPDICFSTSKVPRCVNTQ-PG---FHCLPCPPRYRGNQPVGV   87 (634)
T ss_dssp             TTCCEEECTTSCEEECCCCTTBCSCSSSCCBC-CTTTTSCCCSCCCSSSCCEEECS-SS---EEECCCCTTEEECCCEES
T ss_pred             CCCEEecCCCCCeECCcCCCccCCCCCCcccc-ccccCCCCcccCCccccceeecc-Cc---eecccCCCCcccCccccc
Confidence            5689999985 599966999999777899988 99998755599888   899998 87   9998 99999977421  


Q ss_pred             --------cCCcccCCCCCCCCC--CCCCCCCeeccCCC----CceeeeCCCCCcc--CCCc
Q psy4097          76 --------LMGCAYGMSGNPCGG--VTCEHGGICAPIGD----RGYRCQCEPGFTG--ESEL  121 (129)
Q Consensus        76 --------~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~----~~~~C~C~~g~~g--~~c~  121 (129)
                              ...|. .+  ++|..  ++|.+++.| ++..    ++|+|.|++||.|  ..|+
T Consensus        88 g~~~~~~dg~~C~-di--deC~~~~~pC~~~~~C-vnt~~~~~GsY~C~C~~Gy~GdG~~Ce  145 (634)
T 1yo8_A           88 GLEAAKTEKQVCE-PE--NPCKDKTHNCHKHAEC-IYLGHFSDPMYKCECQTGYAGDGLICG  145 (634)
T ss_dssp             SSHHHHSCCCCEE-EC--CTTTTTCCCCCTTEEE-EECCTTCSSSEEEEECTTEEESSSSEE
T ss_pred             cccccccCCCccc-cc--ccccCCCcccccCccc-cccccccccceeeeccCCccccCcccc
Confidence                    11377 77  89984  689988999 8887    9999999999998  4565

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.67  E-value=1.1e-17  Score=106.43  Aligned_cols=110  Identities=24%  Similarity=0.517  Sum_probs=87.3

Q ss_pred             CCceeeeCC-----CceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeee----eCCCCCcceeeecCCCCCcCCC
Q psy4097           3 PYVECINTQ-----GYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCR----ETSDTVRSVISCTCPPGMGGSG   73 (129)
Q Consensus         3 ~~~~C~~~~-----g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~----~~~~g~~~~~~c~c~~g~~g~~   73 (129)
                      +++.|+++.     ++|.| .|.+||.++...|+ + ++|...  +|.++++|+    ++. ++   |.|.|++||.+..
T Consensus        58 ~~~~C~~~~~~~~~g~y~C-~C~~G~~g~~~~C~-~-d~C~~~--~C~~~g~C~~~~~~~~-g~---~~C~C~~Gy~g~~  128 (186)
T 1z1y_A           58 EFGQCIENPDPAQVNMYXC-GCIEGYTLXEDTCV-L-DVCQYX--NCGESGECIVEYLSEI-QS---AGCSCAIGXVPNP  128 (186)
T ss_dssp             TTEEEEECSSTTSSCSEEE-EECTTEEEETTEEE-E-GGGTTC--CCCTTEEEEEEEETTE-EE---EEEEECTEEEEET
T ss_pred             CCCEeecCCCCcCCCCEEC-CCCCCCccCCCCCC-C-CcCcCC--CCCCCCEEeeCCcCCC-CC---ceEECCCCCcccC
Confidence            357899998     89999 99999996555676 4 899876  899889998    666 66   9999999999821


Q ss_pred             CCcCCcccCCCCCCCCCCCC-CCCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          74 VGLMGCAYGMSGNPCGGVTC-EHGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        74 ~~~~~c~~~~~~~~C~~~~C-~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .....|+ ++..++|. .+| .+++.| ++..++|+|.|++||.|+.++...
T Consensus       129 ~~~~~C~-~~~~~~C~-~~C~~~~~~C-~n~~g~y~C~C~~G~~g~~~~~~~  177 (186)
T 1z1y_A          129 EDEXXCT-XTGETACQ-LXCNTDNEVC-XNVEGVYXCQCMEGFTFDXEXNVC  177 (186)
T ss_dssp             TTTTEEE-EEECCCCC-CCCCTTTEEE-EEETTEEEEEECTTCEEETTTTEE
T ss_pred             CCCCcce-EcCCCccc-ccccccCcce-ecCCCCeeeECCCCCccCcccccC
Confidence            1111787 53116886 489 888899 899999999999999999987543

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.64  E-value=1.7e-17  Score=105.44  Aligned_cols=101  Identities=22%  Similarity=0.543  Sum_probs=83.6

Q ss_pred             CceeeeCCCceecccCCCCccc-CCCCcccCCCCccCC--CCCCCCCCeeeeCCC----CCcceeeecCCCCCcCCCCCc
Q psy4097           4 YVECINTQGYRKCGQCPHGWVG-DGTTCRQGTTGCSVQ--NGGCHPLATCRETSD----TVRSVISCTCPPGMGGSGVGL   76 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~-~~~~C~~~~~~C~~~--~~~C~~~~~C~~~~~----g~~~~~~c~c~~g~~g~~~~~   76 (129)
                      +++|+++.++|.| .|.+||.+ ++..|+++ ++|...  ..+|.++++|+++..    ++   |.|.|++||.+.+.  
T Consensus        15 ng~C~~~~g~~~C-~C~~G~~g~~~~~C~~i-d~C~~~~~~~~C~~~~~C~~~~~~~~~g~---y~C~C~~G~~g~~~--   87 (186)
T 1z1y_A           15 NGQLVQMSNHFXC-MCNEGLVHLSENTCEEX-NECXXETLGXACGEFGQCIENPDPAQVNM---YXCGCIEGYTLXED--   87 (186)
T ss_dssp             TEEEEECSSCEEE-EECTTEEEEETTEEEEC-CCCSGGGTTSEEETTEEEEECSSTTSSCS---EEEEECTTEEEETT--
T ss_pred             CCEeECCCCCeEe-ECCCCCccCCCCccCCC-CcccCCCCCCCCCCCCEeecCCCCcCCCC---EECCCCCCCccCCC--
Confidence            4589999999999 99999994 35589988 999843  348998899998761    34   99999999998733  


Q ss_pred             CCcccCCCCCCCCCCCCCCCCeecc----CCCCceeeeCCCCCcc
Q psy4097          77 MGCAYGMSGNPCGGVTCEHGGICAP----IGDRGYRCQCEPGFTG  117 (129)
Q Consensus        77 ~~c~~~~~~~~C~~~~C~~~~~C~~----~~~~~~~C~C~~g~~g  117 (129)
                       .|.  +  ++|...+|.+++.| +    +..++|+|.|++||.|
T Consensus        88 -~C~--~--d~C~~~~C~~~g~C-~~~~~~~~g~~~C~C~~Gy~g  126 (186)
T 1z1y_A           88 -TCV--L--DVCQYXNCGESGEC-IVEYLSEIQSAGCSCAIGXVP  126 (186)
T ss_dssp             -EEE--E--GGGTTCCCCTTEEE-EEEEETTEEEEEEEECTEEEE
T ss_pred             -CCC--C--CcCcCCCCCCCCEE-eeCCcCCCCCceEECCCCCcc
Confidence             343  3  78988899988899 7    8888999999999998

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.56  E-value=1.2e-14  Score=87.86  Aligned_cols=80  Identities=24%  Similarity=0.601  Sum_probs=69.3

Q ss_pred             cccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceee
Q psy4097          30 CRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRC  109 (129)
Q Consensus        30 C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C  109 (129)
                      |+++ ++|.....+|.++++|+++. ++   |.|.|++||.|.     .|+.++  ++|...+|.+++.| ++..++|.|
T Consensus         2 c~di-deC~~~~~~C~~~g~C~~~~-g~---~~C~C~~Gy~G~-----~C~~~~--~~C~~~~C~~~~~C-~~~~g~~~C   68 (135)
T 2vj3_A            2 AQDV-DECSLGANPCEHAGKCINTL-GS---FECQCLQGYTGP-----RCEIDV--NECVSNPCQNDATC-LDQIGEFQC   68 (135)
T ss_dssp             -CCC-CTTTSSSCSSSTTCEEEECS-SS---EEEECCTTEEST-----TSCEEC--CTTTTCCCCSSCEE-EECSSCEEE
T ss_pred             Cccc-ccccCCCCCCCCCCEeECCC-CC---EEEECCCCCcCC-----cccccC--ccCCCCCCCCCCEE-eCCCCCcee
Confidence            5677 99986556999999999998 87   999999999988     785245  89988899998999 888999999


Q ss_pred             eCCCCCccCCCcc
Q psy4097         110 QCEPGFTGESELL  122 (129)
Q Consensus       110 ~C~~g~~g~~c~~  122 (129)
                      .|++||.|..|+.
T Consensus        69 ~C~~G~~G~~C~~   81 (135)
T 2vj3_A           69 ICMPGYEGVHCEV   81 (135)
T ss_dssp             ECCTTEESSSSCE
T ss_pred             eCCCCCcCCccee
Confidence            9999999999874

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.54  E-value=7.5e-16  Score=95.91  Aligned_cols=106  Identities=22%  Similarity=0.497  Sum_probs=72.9

Q ss_pred             CceeeeCCCceecccCCCCccc--CCCCcccCCCC--ccCCCCCCC--CCCeeeeCCCC----CcceeeecCCCCCc-C-
Q psy4097           4 YVECINTQGYRKCGQCPHGWVG--DGTTCRQGTTG--CSVQNGGCH--PLATCRETSDT----VRSVISCTCPPGMG-G-   71 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~--~~~~C~~~~~~--C~~~~~~C~--~~~~C~~~~~g----~~~~~~c~c~~g~~-g-   71 (129)
                      +++|+|++++|.| .|++||.+  ++..|+++ ++  |.....+|.  ..+.|++.. +    +   |.|.|++||. + 
T Consensus        14 ~~~C~n~~gsy~C-~C~~Gy~~~~~g~~C~d~-~~~~C~~~~~~c~~~~~~~C~~~~-~~~~~~---~~C~C~~G~~~~~   87 (162)
T 1uzk_A           14 SGNCVNTPGSYIC-DCPPDFELNPTRVGCVDT-RSGNCYLDIRPRGDNGDTACSNEI-GVGVSK---ASCCCSLGKAWGT   87 (162)
T ss_dssp             TSEEEEETTEEEE-ECCTTCEECTTSSBEECC-CCEEEEEEC----------CEEEE-EEEECH---HHHHTTTCCEETT
T ss_pred             CCEeECCCCCEEE-eCCCCCeECCCCCcccCC-CCCcccCCCcccCCCCCCcccCCc-CCcccC---ceeeCCCCCCcCC
Confidence            5789999999999 99999984  47899987 76  876543442  456787765 4    3   6677776664 1 


Q ss_pred             --------------------CCCCc----CCcccCCCCCCCCC--CCCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          72 --------------------SGVGL----MGCAYGMSGNPCGG--VTCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        72 --------------------~~~~~----~~c~~~~~~~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                                          .|+..    ..|. ++  ++|..  ++|.+ +.| ++..++|+|.|++||.|+..
T Consensus        88 ~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~-di--deC~~~~~~C~~-g~C-~n~~gsy~C~C~~Gy~g~~d  157 (162)
T 1uzk_A           88 PCEMCPAVNTSEYKILCPGGEGFRPNPITVILE-DI--DECQELPGLCQG-GKC-INTFGSFQCRCPTGYYLNED  157 (162)
T ss_dssp             TTEECCCTTSHHHHHHCTTCTTEEECTTTCCEE-EC--CHHHHCGGGGBT-SEE-EECSSCEEEECCTTCCBCTT
T ss_pred             CcccCCCCCCCCceeECCCCCCcccCCCCCccC-cc--ccccCCCCCcCC-CEe-EcCCCCEEeeCCCCccCCCC
Confidence                                12111    1356 67  88973  56976 599 99999999999999998754

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.50  E-value=1.8e-14  Score=81.49  Aligned_cols=84  Identities=21%  Similarity=0.452  Sum_probs=67.0

Q ss_pred             ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc-cCCCCCCCCCC
Q psy4097          13 YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA-YGMSGNPCGGV   91 (129)
Q Consensus        13 ~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~-~~~~~~~C~~~   91 (129)
                      +|.| .|.+||.  +..|+ + ++|...  +|.      +.. ++   |.|.|++||.       .|+ .++  ++|..+
T Consensus         1 sy~C-~C~~g~~--g~~c~-~-~~c~~~--pC~------n~~-~~---y~C~C~~G~~-------~C~~~~~--~~C~~~   54 (91)
T 1tpg_A            1 SYQV-ICRDEKT--QMIYQ-Q-HQSWLR--PVL------RSN-RV---EYCWCNSGRA-------QCHSVPV--KSCSEP   54 (91)
T ss_dssp             CCCC-CCBCSSS--CCBCC-S-SCEEEE--ECS------SSS-CE---EEEECSSSCC-------BCCEECE--EECSSC
T ss_pred             Ceee-ECCCCCc--CCeEC-C-CcccCC--ccc------cCC-CC---cEeECCCCCc-------ccccCcC--CcccCC
Confidence            5889 9999999  77774 5 788754  654      334 55   9999999996       353 145  889889


Q ss_pred             CCCCCCeeccCCC--CceeeeCCCCCccCCCccc
Q psy4097          92 TCEHGGICAPIGD--RGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        92 ~C~~~~~C~~~~~--~~~~C~C~~g~~g~~c~~~  123 (129)
                      ||.+++.| ++..  ++|.|.|++||.|..|+..
T Consensus        55 pC~ngg~C-~~~~~~~~~~C~C~~G~~G~~Ce~~   87 (91)
T 1tpg_A           55 RCFNGGTC-QQALYFSDFVCQCPEGFAGKSCEID   87 (91)
T ss_dssp             CSCTTCEE-EEESSSSCEEEECCTTCBSSSCCBC
T ss_pred             CCCCCCEe-ecCCCCCCeEeECCCCCcCCcCCcC
Confidence            99999999 7766  8999999999999999864

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.49  E-value=3.2e-14  Score=78.93  Aligned_cols=77  Identities=27%  Similarity=0.638  Sum_probs=63.7

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCC-CCCCCCCCeeccCCCCce
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCG-GVTCEHGGICAPIGDRGY  107 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~-~~~C~~~~~C~~~~~~~~  107 (129)
                      +|.++ ++|.. ..+|.+ ++|+++. ++   |.|.|++||.+.+.   .|. ++  ++|. .++|.++ .| ++..++|
T Consensus         1 sC~di-deC~~-~~~C~~-g~C~n~~-g~---y~C~C~~Gy~~~g~---~C~-di--deC~~~~~C~~~-~C-~n~~g~y   65 (82)
T 1emn_A            1 SAVDM-DECKE-PDVCKH-GQCINTD-GS---YRCECPFGYILAGN---ECV-DT--DECSVGNPCGNG-TC-KNVIGGF   65 (82)
T ss_dssp             CCCCC-CSSSS-TTSCSS-SEECCCS-SC---CCEECCTTEEEETT---EEE-EC--CGGGTCCTTSSS-CE-EECSSSE
T ss_pred             CCCcc-ccCCC-CCCcCC-CEEEecC-CC---EEEECCCCeECCCC---ccC-Cc--ccccCCCCCCCC-Ee-ECCCCCE
Confidence            46777 99986 458975 8999988 87   99999999984333   898 88  9997 6889864 89 9999999


Q ss_pred             eeeCCCCCccCCC
Q psy4097         108 RCQCEPGFTGESE  120 (129)
Q Consensus       108 ~C~C~~g~~g~~c  120 (129)
                      +|.|++||.|+.-
T Consensus        66 ~C~C~~G~~g~~~   78 (82)
T 1emn_A           66 ECTCEEGFEPGPM   78 (82)
T ss_dssp             EECCSSSSCCCSS
T ss_pred             EeECCCCeEeCCC
Confidence            9999999988653

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.46  E-value=1e-14  Score=86.27  Aligned_cols=94  Identities=26%  Similarity=0.606  Sum_probs=70.2

Q ss_pred             ceeeeC-CCceecccCCCCcccCCCCcccCCCCccC--CCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC-CCCcCCcc
Q psy4097           5 VECINT-QGYRKCGQCPHGWVGDGTTCRQGTTGCSV--QNGGCHPLATCRETSDTVRSVISCTCPPGMGGS-GVGLMGCA   80 (129)
Q Consensus         5 ~~C~~~-~g~~~C~~C~~g~~~~~~~C~~~~~~C~~--~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~-~~~~~~c~   80 (129)
                      .+|+++ .++|.| .|++||.+.  .+ ++ ++|..  ...+|.  +.|.+ . ++   |.|.|++||.+. +.   .|.
T Consensus        14 ~~C~~~~~g~y~C-~C~~Gy~g~--~~-~~-~~C~~~C~~~~C~--~~C~~-~-~~---y~C~C~~Gy~~~~g~---~C~   78 (118)
T 1dx5_I           14 YQCQPLDQTSYLC-VCAEGFAPI--PH-EP-HRCQMFCNQTACP--ADCDP-N-TQ---ASCECPEGYILDDGF---ICT   78 (118)
T ss_dssp             SEEEECSSSCEEE-ECCTTEEEE--TT-EE-EEEEECCCSSEEE--CEECT-T-ST---TCEECCTTEEEETTT---EEE
T ss_pred             CCCCCCCCCCEEe-ECCCCcccc--CC-CC-CccccccCCCCCC--CcccC-C-CC---eEeECCCCccCCCCC---ccc
Confidence            389999 899999 999999943  22 22 34432  112454  57876 4 55   999999999833 22   798


Q ss_pred             cCCCCCCCCC-CCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          81 YGMSGNPCGG-VTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        81 ~~~~~~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                       ++  ++|.. ++|  ++.| ++..++|+|.|++||.+..
T Consensus        79 -di--deC~~~~~C--~~~C-~n~~g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           79 -DI--DECENGGFC--SGVC-HNLPGTFECICGPDSALAG  112 (118)
T ss_dssp             -EC--CHHHHCSSC--SSEE-EECSSSEEEEECSSSSCEE
T ss_pred             -cc--cccCCCCCC--cCeE-EeCCCCEEEECCCCCccCC
Confidence             88  99985 889  5689 8999999999999998754

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.39  E-value=1.7e-13  Score=76.61  Aligned_cols=78  Identities=24%  Similarity=0.661  Sum_probs=60.4

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCC--CCCCCeeccCCCCceee
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVT--CEHGGICAPIGDRGYRC  109 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~--C~~~~~C~~~~~~~~~C  109 (129)
                      ++ ++|...+.+|.+ ++|+++. ++   |.|.|++||.+.......|. ++  ++|...+  |. ++.| ++..++|+|
T Consensus         2 di-deC~~~~~~C~~-g~C~n~~-g~---y~C~C~~Gy~~~~~~g~~C~-di--deC~~~~~~C~-~~~C-~n~~g~y~C   70 (86)
T 1lmj_A            2 DI-DECRISPDLCGR-GQCVNTP-GD---FECKCDEGYESGFMMMKNCM-DI--DECQRDPLLCR-GGVC-HNTEGSYRC   70 (86)
T ss_dssp             CC-CTTTTCSSTTTT-SCEEEET-TE---EEECCCSSEEECTTTSSSEE-EC--CHHHHCSSTTT-TSEE-EEETTEEEE
T ss_pred             cc-ccccCCCCCCCC-CEEECCC-CC---EEeeCCCCcCccCCCCCccC-Cc--ccccCCCCcCC-CCEe-EcCCCCEEE
Confidence            45 889887566965 5899999 87   99999999984311111798 88  9997544  75 4699 999999999


Q ss_pred             eCCCCCccCCC
Q psy4097         110 QCEPGFTGESE  120 (129)
Q Consensus       110 ~C~~g~~g~~c  120 (129)
                      .|++||.+..-
T Consensus        71 ~C~~G~~~~~~   81 (86)
T 1lmj_A           71 ECPPGHQLSPN   81 (86)
T ss_dssp             ESCTTSCCCSS
T ss_pred             ECcCCcccCCC
Confidence            99999987653

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.33  E-value=5e-14  Score=86.31  Aligned_cols=105  Identities=23%  Similarity=0.551  Sum_probs=68.0

Q ss_pred             CceeeeCCCceecccCCCCcccC--CCCcccCC-C---------CccCCCCCCCCCCeeeeCCCCCc-------ceeeec
Q psy4097           4 YVECINTQGYRKCGQCPHGWVGD--GTTCRQGT-T---------GCSVQNGGCHPLATCRETSDTVR-------SVISCT   64 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~~--~~~C~~~~-~---------~C~~~~~~C~~~~~C~~~~~g~~-------~~~~c~   64 (129)
                      +++|++++++|.| .|++||+++  +..|.++. .         .|......|.....|.+.. +..       -.|.|.
T Consensus        14 ng~C~n~~g~y~C-~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~-g~~~g~~C~~c~~~C~   91 (147)
T 2w86_A           14 NGVCKNSPGSFIC-ECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSL-GAAWGSPCTLCQVDPI   91 (147)
T ss_dssp             TSEEEEETTEEEE-ECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTT-CSEETTTTEECCCCTT
T ss_pred             CCEeECCCCCEEe-ECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCc-CcccCCCcccCCCccc
Confidence            4689999999999 999999843  34565431 0         1211000111111111111 110       006789


Q ss_pred             CCCCCc---CCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          65 CPPGMG---GSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        65 c~~g~~---g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                      |++||.   +.     .|+ ++  ++|..  ++|.++ .| ++..++|+|.|++||.+...
T Consensus        92 C~~Gy~~~~g~-----~C~-di--deC~~~~~~C~~g-~C-~n~~g~y~C~C~~Gy~g~~~  142 (147)
T 2w86_A           92 CGKGYSRIKGT-----QCE-DI--DECEVFPGVCKNG-LC-VNTRGSFKCQCPSGMTLDAT  142 (147)
T ss_dssp             TCTTEEEEETT-----EEE-EC--CHHHHSTTCSSSS-EE-EEETTEEEEECCTTCCBCTT
T ss_pred             CCCccccCCCC-----ccC-cc--ccccCCCCCCCCC-EE-ECCCCCEEeeCCCCCccCCC
Confidence            999996   55     898 88  99973  559865 99 99999999999999998753

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=73.63  Aligned_cols=71  Identities=27%  Similarity=0.685  Sum_probs=56.7

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC--CCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS--GVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCE  112 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~--~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~  112 (129)
                      ++|...+.+| ++++|+++. ++   |.|.|++||.+.  +.   .|+ ++  ++|..++|.  +.| ++..++|+|.|+
T Consensus         4 deC~~~~~~C-~~~~C~n~~-g~---y~C~C~~G~~~~~~g~---~C~-di--deC~~~~C~--~~C-~n~~g~y~C~C~   69 (87)
T 1z6c_A            4 DECSLKPSIC-GTAVCKNIP-GD---FECECPEGYRYNLKSK---SCE-DI--DECSENMCA--QLC-VNYPGGYTCYCD   69 (87)
T ss_dssp             CSSSSSSSSB-TTSSCCCBT-TB---CCCSSSTTCEEETTTT---EEE-CC--CHHHHSCCS--SEE-CCCSSSCCEECC
T ss_pred             ccccCCCCCC-CCCEeECCC-CC---EEEECCCCceECCCCC---cCC-Cc--CeeCCCCCC--CEE-EccCCCEEEECC
Confidence            8898875458 678999988 87   999999999833  22   788 88  999878897  489 999999999996


Q ss_pred             CCCccCCC
Q psy4097         113 PGFTGESE  120 (129)
Q Consensus       113 ~g~~g~~c  120 (129)
                       |+.|..+
T Consensus        70 -g~~G~~~   76 (87)
T 1z6c_A           70 -GKKGFKL   76 (87)
T ss_dssp             -SSSCCBC
T ss_pred             -CCcCCcc
Confidence             5554443

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.30  E-value=2.4e-12  Score=78.73  Aligned_cols=77  Identities=22%  Similarity=0.530  Sum_probs=60.1

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCCCCc
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIGDRG  106 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~~~  106 (129)
                      .|.++ ++|...  +|.++++|++.. ++   |.|.|++||.|.     .|. ++  ++|..  .+|.+  .|+++..++
T Consensus        44 ~c~di-deC~~~--pC~n~g~C~~~~-~~---y~C~C~~G~~G~-----~C~-~~--deC~~~~~~C~~--~C~~n~~g~  106 (146)
T 1x7a_L           44 QYVDG-DQCEPN--PCLNGGLCKDDI-NS---YECWCQVGFEGK-----NCE-LD--ATCNIKNGRCKQ--FCKTGADSK  106 (146)
T ss_dssp             -------CCSSC--SSCTTCEEEECS-SC---EEEECCSSEEST-----TTC-EE--CCTTSGGGSCSS--BCCCCSSSC
T ss_pred             cCCCc-CcCCCC--CCCCCCEeECCC-CC---EEEecCCCCcCC-----cCC-CC--ccccCCCCCCcC--CCCCCCCCC
Confidence            58888 999876  999999999988 77   999999999988     898 77  89985  46766  684577889


Q ss_pred             eeeeCCCCCc----cCCCcc
Q psy4097         107 YRCQCEPGFT----GESELL  122 (129)
Q Consensus       107 ~~C~C~~g~~----g~~c~~  122 (129)
                      |+|.|++||.    |..|+.
T Consensus       107 y~C~C~~Gy~l~~dG~~C~~  126 (146)
T 1x7a_L          107 VLCSCTTGYRLAPDQKSCKP  126 (146)
T ss_dssp             CCCBCCTTEEECTTSSSEEE
T ss_pred             EEeEcCCCcEeCCCCCcCCC
Confidence            9999999999    777753

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.27  E-value=5.3e-12  Score=69.90  Aligned_cols=62  Identities=34%  Similarity=0.801  Sum_probs=53.9

Q ss_pred             CceeeeCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCC
Q psy4097           4 YVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSG   73 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~   73 (129)
                      ++.|+++.++|.| .|++||.+++..|+++ ++|.. ..+|.+ ++|+++. ++   |.|.|++||.+.+
T Consensus        16 ~g~C~n~~g~y~C-~C~~Gy~~~g~~C~di-deC~~-~~~C~~-~~C~n~~-g~---y~C~C~~G~~g~~   77 (82)
T 1emn_A           16 HGQCINTDGSYRC-ECPFGYILAGNECVDT-DECSV-GNPCGN-GTCKNVI-GG---FECTCEEGFEPGP   77 (82)
T ss_dssp             SSEECCCSSCCCE-ECCTTEEEETTEEEEC-CGGGT-CCTTSS-SCEEECS-SS---EEECCSSSSCCCS
T ss_pred             CCEEEecCCCEEE-ECCCCeECCCCccCCc-ccccC-CCCCCC-CEeECCC-CC---EEeECCCCeEeCC
Confidence            4789999999999 9999998778899988 99984 348975 6999999 88   9999999998763

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.23  E-value=2.7e-12  Score=74.55  Aligned_cols=83  Identities=28%  Similarity=0.659  Sum_probs=36.8

Q ss_pred             cCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC-CCCcCCcccCCCCCCCC-CCCCCC
Q psy4097          18 QCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS-GVGLMGCAYGMSGNPCG-GVTCEH   95 (129)
Q Consensus        18 ~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~-~~~~~~c~~~~~~~~C~-~~~C~~   95 (129)
                      ....+|.  +..| ++ ++|......|.  .+|.++. ++   |.|.|++||.+. +.   .|+ ++  ++|. .++|. 
T Consensus        17 ~~~~~~~--~~~C-d~-neC~~~~~~C~--~~C~n~~-g~---y~C~C~~Gy~g~~g~---~C~-di--deC~~~~~C~-   79 (107)
T 2w2n_E           17 TTENLYF--QGAM-GT-NECLDNNGGCS--YVCNDLK-IG---YECLCPDGFQLVAQR---RCE-DI--DECQDPDTCS-   79 (107)
T ss_dssp             ---CCCC--SCCB-SC-CGGGTGGGGCS--SEEECCS-BS---CEEECCTTCEEETTT---EEE-C--------------
T ss_pred             ccCCCcC--CCCC-cC-ccCcCCCCCCC--CEeEeCC-CC---eEEECCCCccccCCC---ccc-cc--cccCCCCCcC-
Confidence            3456776  7778 55 89987555675  5899988 77   999999999872 22   798 88  9997 37886 


Q ss_pred             CCeeccCCCCceeeeCCCCCccCC
Q psy4097          96 GGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        96 ~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                       +.| ++..++|.|.|++||.+..
T Consensus        80 -~~C-~n~~gsy~C~C~~Gy~~~~  101 (107)
T 2w2n_E           80 -QLC-VNLEGGYKCQCEEGFQLDP  101 (107)
T ss_dssp             ------------------------
T ss_pred             -Cee-ecCCCCEEEECCCCceECC
Confidence             489 9999999999999998754

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.23  E-value=5.7e-12  Score=76.71  Aligned_cols=79  Identities=23%  Similarity=0.540  Sum_probs=60.3

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCC---eeccCCCC
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGG---ICAPIGDR  105 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~---~C~~~~~~  105 (129)
                      .|.++ ++|...  +|.++++|+++. ++   |.|.|++||.|.     .|. ... ++|...++.+++   .| ++..+
T Consensus        43 ~c~di-d~C~~~--pC~n~g~C~~~~-g~---y~C~C~~G~~G~-----~C~-~~~-~~c~~c~~~~~~C~~~C-~~~~g  107 (142)
T 2c4f_L           43 SYSDG-DQCASS--PCQNGGSCKDQL-QS---YICFCLPAFEGR-----NCE-THK-DDQLICVNENGGCEQYC-SDHTG  107 (142)
T ss_dssp             HHTTC-CGGGGC--CCCTTCEEEEET-TE---EEEECCTTEEST-----TSC-EEG-GGCCSTTTGGGGCSSEE-ECCTT
T ss_pred             cCCcc-CcCcCC--CcCCCCEEeCCC-CC---EEeeCCCCccCC-----ccc-cCc-cccccccCCCCCccCEe-ECCCC
Confidence            35566 899876  999999999988 77   999999999988     887 511 444322333332   79 88888


Q ss_pred             -ceeeeCCCCCc----cCCCcc
Q psy4097         106 -GYRCQCEPGFT----GESELL  122 (129)
Q Consensus       106 -~~~C~C~~g~~----g~~c~~  122 (129)
                       +|+|.|++||.    |..|+.
T Consensus       108 ~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L          108 TKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             SCCEEECCTTEEECTTSSCEEE
T ss_pred             CCEEEECCCCceECCCCCCCCC
Confidence             99999999999    777753

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.22  E-value=7.7e-12  Score=69.85  Aligned_cols=62  Identities=29%  Similarity=0.613  Sum_probs=53.2

Q ss_pred             CceeeeCCCceecccCCCCccc---CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           4 YVECINTQGYRKCGQCPHGWVG---DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~---~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++.|++++++|.| .|++||.+   ++..|+++ ++|...+..|. +++|+++. ++   |.|.|++||.+.
T Consensus        15 ~g~C~n~~g~y~C-~C~~Gy~~~~~~g~~C~di-deC~~~~~~C~-~~~C~n~~-g~---y~C~C~~G~~~~   79 (86)
T 1lmj_A           15 RGQCVNTPGDFEC-KCDEGYESGFMMMKNCMDI-DECQRDPLLCR-GGVCHNTE-GS---YRCECPPGHQLS   79 (86)
T ss_dssp             TSCEEEETTEEEE-CCCSSEEECTTTSSSEEEC-CHHHHCSSTTT-TSEEEEET-TE---EEEESCTTSCCC
T ss_pred             CCEEECCCCCEEe-eCCCCcCccCCCCCccCCc-ccccCCCCcCC-CCEeEcCC-CC---EEEECcCCcccC
Confidence            4589999999999 99999984   37899988 99988754576 47999999 88   999999999866

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=74.53  Aligned_cols=76  Identities=30%  Similarity=0.698  Sum_probs=57.1

Q ss_pred             CCccCCCCCCCCCCeeeeCCC-CCcceeeecCCCCCcCCCCCcCCcccCC-----------CCCCCCCCCCCCCCeecc-
Q psy4097          35 TGCSVQNGGCHPLATCRETSD-TVRSVISCTCPPGMGGSGVGLMGCAYGM-----------SGNPCGGVTCEHGGICAP-  101 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~-g~~~~~~c~c~~g~~g~~~~~~~c~~~~-----------~~~~C~~~~C~~~~~C~~-  101 (129)
                      |+|...  +|.++++|++... ++   |.|.|++||.|.     .|+ .+           ..++|..++|.+++.| + 
T Consensus         1 d~C~~~--pC~~~g~C~~~~~~g~---~~C~C~~G~~G~-----~C~-~~~~~~~~~~~c~~~~~C~~~~C~~~g~C-~~   68 (143)
T 4d90_A            1 DICDPN--PCENGGICLPGLADGS---FSCECPDGFTDP-----NCS-SVVEVASDEEEPTSAGPCTPNPCHNGGTC-EI   68 (143)
T ss_dssp             --CCSC--CCGGGCEEEC-----C---CEEECCTTCCTT-----TTC-SCCCCTTTTTSCCCCCTTSSCCCCTTCEE-EE
T ss_pred             CcCCCC--cCCCCCEeeCCCCCCC---EEeECCCCCCCC-----CCc-cCccccccccccccCCcCCCCCCCCCCEe-cC
Confidence            457655  8999999987541 34   899999999987     665 31           0167877889999999 7 


Q ss_pred             ------CCCCceeeeCCCCCccCCCcc
Q psy4097         102 ------IGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus       102 ------~~~~~~~C~C~~g~~g~~c~~  122 (129)
                            +..++|.|.|++||.|..|+.
T Consensus        69 ~~~~~~~~~~~~~C~C~~G~~G~~C~~   95 (143)
T 4d90_A           69 SEAYRGDTFIGYVCKCPRGFNGIHCQH   95 (143)
T ss_dssp             CCCEETTEECCEEEECCTTEESTTSCE
T ss_pred             CCccccCCCCCeEeECcCCCcCCCccc
Confidence                  566899999999999999973

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.22  E-value=2.4e-11  Score=89.12  Aligned_cols=75  Identities=32%  Similarity=0.790  Sum_probs=64.8

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeee-cCCCCCcCCCCCcCCcccCCCCCCCCCCC--CCCCC---eeccCCCCcee
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISC-TCPPGMGGSGVGLMGCAYGMSGNPCGGVT--CEHGG---ICAPIGDRGYR  108 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c-~c~~g~~g~~~~~~~c~~~~~~~~C~~~~--C~~~~---~C~~~~~~~~~  108 (129)
                      ++|...  +|.++++|+++..++   |.| .|++||.+.+.   .|+ .+  ++|...+  |.+++   .| ++..++|+
T Consensus         4 DeC~~n--PC~~gg~C~n~~~Gs---y~C~~C~~GytGdg~---~Ce-Di--DEC~~~p~~C~~gg~~~~C-vNt~gsY~   71 (634)
T 1yo8_A            4 DGCLSN--PCFPGAQCSSFPDGS---WSCGFCPVGFLGNGT---HCE-DL--DECALVPDICFSTSKVPRC-VNTQPGFH   71 (634)
T ss_dssp             CGGGGC--CSCTTCCEEECTTSC---EEECCCCTTBCSCSS---SCC-BC--CTTTTSCCCSCCCSSSCCE-EECSSSEE
T ss_pred             cccCCC--CCCCCCEEecCCCCC---eECCcCCCccCCCCC---Ccc-cc--ccccCCCCcccCCccccce-eeccCcee
Confidence            889765  999999999876234   999 99999998665   798 88  9998666  99888   89 99999999


Q ss_pred             ee-CCCCCccCCCc
Q psy4097         109 CQ-CEPGFTGESEL  121 (129)
Q Consensus       109 C~-C~~g~~g~~c~  121 (129)
                      |. |++||.|..|+
T Consensus        72 C~~C~~Gy~G~~c~   85 (634)
T 1yo8_A           72 CLPCPPRYRGNQPV   85 (634)
T ss_dssp             ECCCCTTEEECCCE
T ss_pred             cccCCCCcccCccc
Confidence            98 99999998865

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.21  E-value=3.2e-12  Score=80.00  Aligned_cols=86  Identities=31%  Similarity=0.841  Sum_probs=63.9

Q ss_pred             ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC-C
Q psy4097          13 YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG-V   91 (129)
Q Consensus        13 ~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~-~   91 (129)
                      .+.| .|.+||.  +..|+    +|... ..|.+ ++|.    ++   +.|.|++||.|.     .|+.++  ++|.. .
T Consensus        82 ~~~C-~C~~G~~--G~~C~----~C~~~-~~C~~-g~C~----~~---~~C~C~~G~~G~-----~C~~~~--~~C~~~~  138 (169)
T 2vj2_A           82 PGDC-RCQYGWQ--GLYCD----KCIPH-PGCVH-GICN----EP---WQCLCETNWGGQ-----LCDKDL--NYCGTHQ  138 (169)
T ss_dssp             TTCC-EECTTEE--SSSSC----EECCC-TTCSS-EECS----ST---TCCEECTTEETT-----TTCEES--CHHHHTC
T ss_pred             CCee-ECCCCCC--CCCcc----cCCCC-CCCCC-CCcC----CC---CEEeCCCCCCCC-----cccCCC--CCCCCCC
Confidence            3678 8888888  67774    24432 12654 3675    22   789999999988     786234  78873 7


Q ss_pred             CCCCCCeeccCC-CCceeeeCCCCCccCCCcc
Q psy4097          92 TCEHGGICAPIG-DRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        92 ~C~~~~~C~~~~-~~~~~C~C~~g~~g~~c~~  122 (129)
                      +|.+++.| ++. .++|+|.|++||.|+.|++
T Consensus       139 ~C~~~g~C-~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          139 PCLNGGTC-SNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             CCCTTCEE-EECSTTCEEEECCTTCCSTTSCC
T ss_pred             CCCCCCEE-cCCCCCCcEeECCCCCcCcCcCC
Confidence            89999999 775 7889999999999999873

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.21  E-value=2.3e-11  Score=74.03  Aligned_cols=64  Identities=30%  Similarity=0.664  Sum_probs=55.8

Q ss_pred             CCceeeeCCCceecccCCCCcccC----------CCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGD----------GTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~----------~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      .++.|+++.++|.| .|++||.+.          +..|+++ ++|.....+|.++++|+++. ++   |.|.|++||.+.
T Consensus        57 ~~~~C~n~~g~y~C-~C~~Gy~g~~~~~~~~~~~~~~C~di-deC~~~~~~C~~~~~C~n~~-g~---y~C~C~~Gy~g~  130 (143)
T 2bou_A           57 KFSDCWNTEGSYDC-VCSPGYEPVSGAKTFKNESENTCQDV-DECSSGQHQCDSSTVCFNTV-GS---YSCRCRPGWKPR  130 (143)
T ss_dssp             TTEEEEECSSCEEE-EECTTEEETTCCSCBSSGGGCCEEEC-CHHHHTCCCCCTTSEEEECS-SC---EEEECCSSSCBC
T ss_pred             CCCEEEcCCCCeEe-ECCCCcccCcCccccccCCCCCcCCc-cCccCcCCCCCCCCEEECCC-CC---EEeeCCCCcccC
Confidence            35899999999999 999999943          3489888 99987556999999999998 88   999999999877

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.16  E-value=4.4e-12  Score=80.77  Aligned_cols=78  Identities=23%  Similarity=0.664  Sum_probs=28.1

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCCCCc
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIGDRG  106 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~~~  106 (129)
                      .|.++ ++|...  +|.++++|++.. ++   |.|.|++||.|.     .|. ....++|..  .+|.+  .| ++..++
T Consensus        38 ~c~di-deC~~~--pC~ngg~C~n~~-g~---y~C~C~~Gf~G~-----~Ce-~~i~deC~~~~~~C~~--~C-~n~~gs  101 (195)
T 1nfu_B           38 KYKDG-DQCETS--PCQNQGKCKDGL-GE---YTCTCLEGFEGK-----NCE-LFTRKLCSLDNGDCDQ--FC-HEEQNS  101 (195)
T ss_dssp             --------------------------------------------------------CCGGGTGGGGCSS--EE-EEETTE
T ss_pred             cCCCC-cccCCC--CCCCCCEeECCC-CC---eeEeCCCCceec-----ccc-ccccccccCCCCCCCC--Ee-ECCCCC
Confidence            58888 999976  999999999988 77   999999999988     897 521156874  46776  89 899999


Q ss_pred             eeeeCCCCCc----cCCCcc
Q psy4097         107 YRCQCEPGFT----GESELL  122 (129)
Q Consensus       107 ~~C~C~~g~~----g~~c~~  122 (129)
                      |.|.|++||.    |..|+.
T Consensus       102 y~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B          102 VVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             EEEECCTTEEECTTSSCEEE
T ss_pred             eEEECCCCceeCCCCCcccc
Confidence            9999999999    777764

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.15  E-value=5.2e-14  Score=93.10  Aligned_cols=102  Identities=16%  Similarity=0.113  Sum_probs=76.8

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCc------------------------------ccCCCCccCCCCCCCCCCeeee
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTC------------------------------RQGTTGCSVQNGGCHPLATCRE   52 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C------------------------------~~~~~~C~~~~~~C~~~~~C~~   52 (129)
                      .+++|++..++|.| .|+.||+  +..|                              +.. ++|.+.  ||.++++|++
T Consensus        42 ngG~C~~g~~~y~C-~Cp~Gf~--G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~-~eC~s~--pC~ngG~C~~  115 (267)
T 4fbr_A           42 DGGKTLKGTMTYNG-EGPIGFR--GTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQN-IVAVSI--KSNDGGKTLT  115 (267)
T ss_dssp             STTSEEEEEEEETT-SCCEEEE--EEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCC-EEEEEE--ECSSTTSEEE
T ss_pred             CCCeecCCCCCeEE-eCCCCcc--cccccccccccccccCcCCCcccCCCeeeccCccccc-cccCCC--CCCCCCEEec
Confidence            56889999999999 9999998  3333                              333 446655  7888899988


Q ss_pred             CCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCC-----------------------------CCCCCCCCCCeeccCC
Q psy4097          53 TSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNP-----------------------------CGGVTCEHGGICAPIG  103 (129)
Q Consensus        53 ~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~-----------------------------C~~~~C~~~~~C~~~~  103 (129)
                      .. .+   |.|.|+.||.+.     .|+ ... ++                             |.+.+|.+++.| ++.
T Consensus       116 ~~-~s---y~C~C~~Gf~G~-----~Ce-~~~-d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C-~dg  183 (267)
T 4fbr_A          116 GT-TT---YNGEGPIGFKSE-----VTD-GDT-YSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKT-LSG  183 (267)
T ss_dssp             EE-EE---ETTSCCEEEEEE-----ECC-CCE-EEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSE-EEE
T ss_pred             CC-cc---EEeeCCCCcccc-----CCC-CCc-ccccccCCcCCccccCCcceecccccccccccCCCCCCCCCEe-eCC
Confidence            77 66   999999999876     343 110 11                             113468888889 888


Q ss_pred             CCceeeeCCCCCccCCCcc
Q psy4097         104 DRGYRCQCEPGFTGESELL  122 (129)
Q Consensus       104 ~~~~~C~C~~g~~g~~c~~  122 (129)
                      ..+|+|.|++||+|..|+.
T Consensus       184 ~~~y~C~Cp~Gf~G~~c~~  202 (267)
T 4fbr_A          184 TMTYNGEGPIGFRGTLTSP  202 (267)
T ss_dssp             EEEETTSCCEEEEEEEEET
T ss_pred             CCCeEEeCCCCcccccccc
Confidence            8999999999999998864

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.12  E-value=2.7e-11  Score=71.09  Aligned_cols=75  Identities=28%  Similarity=0.507  Sum_probs=54.3

Q ss_pred             cccCCCCccCCC------CCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCC-CCCCCC--CCCCCCCeec
Q psy4097          30 CRQGTTGCSVQN------GGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMS-GNPCGG--VTCEHGGICA  100 (129)
Q Consensus        30 C~~~~~~C~~~~------~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~-~~~C~~--~~C~~~~~C~  100 (129)
                      +.++ ++|...+      +.|.++++|+++. ++   |.|.|++||.|.     .|+ ++. .++|..  ..|.+  .| 
T Consensus         3 ~~d~-d~C~~~p~~~~C~~~C~~~g~C~~~~-~~---y~C~C~~G~~G~-----~C~-~~~~~~~C~~~~~~C~~--~C-   68 (114)
T 1aut_L            3 HVDG-DQCLVLPLEHPCASLCCGHGTCIDGI-GS---FSCDCRSGWEGR-----FCQ-REVSFLNCSLDNGGCTH--YC-   68 (114)
T ss_dssp             ------CCCCCSSCCSSSSTTTTSEEECCCS-SC---CCEEECTTEEST-----TSC-EECCSSSSSSGGGGCSS--EE-
T ss_pred             ceec-ccccCCCccccccccCCCcCCCCCCC-CC---cEeeCCCCCcCC-----CcC-cCCcCCcCcCCCCCCCC--Ee-
Confidence            3445 6777662      2388889999888 77   999999999988     787 541 036763  34655  79 


Q ss_pred             cCCCCceeeeCCCCCccC
Q psy4097         101 PIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus       101 ~~~~~~~~C~C~~g~~g~  118 (129)
                      ++..++|+|.|++||.+.
T Consensus        69 ~n~~g~y~C~C~~G~~~~   86 (114)
T 1aut_L           69 LEEVGWRRCSCAPGYKLG   86 (114)
T ss_dssp             EECSSSEEEECCTTEEEC
T ss_pred             ECCCCCEEeECCCCeeEC
Confidence            899999999999999843

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.10  E-value=1.2e-11  Score=74.56  Aligned_cols=78  Identities=23%  Similarity=0.664  Sum_probs=27.4

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCCCCc
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIGDRG  106 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~~~  106 (129)
                      .|.++ ++|...  +|.++++|+++. ++   |.|.|++||.|.     .|. ....++|..  .+|.+  .| ++..++
T Consensus        38 ~c~d~-d~C~~~--pC~n~g~C~~~~-~~---y~C~C~~G~~G~-----~C~-~~i~d~C~~~~~~C~~--~C-~~~~g~  101 (134)
T 2vh0_B           38 KYKDG-DQCETS--PCQNQGKCKDGL-GE---YTCTCLEGFEGK-----NCE-LFTRKLCSLDNGDCDQ--FC-HEEQNS  101 (134)
T ss_dssp             --------------------------------------------------------CCGGGTGGGGCSS--EE-EEETTE
T ss_pred             cCCCc-CcCCCC--CCCCcCCcccCC-CC---EEeeCCCCccCC-----ccc-cCCCCccccCCCCCCC--Ee-ECCCCC
Confidence            57787 999876  899999999888 77   999999999988     887 521156864  45766  89 889999


Q ss_pred             eeeeCCCCCc----cCCCcc
Q psy4097         107 YRCQCEPGFT----GESELL  122 (129)
Q Consensus       107 ~~C~C~~g~~----g~~c~~  122 (129)
                      |.|.|++||.    |..|+.
T Consensus       102 y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B          102 VVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             EEEECCTTEEECTTSSCEEE
T ss_pred             EEEECCCCcEECCCCCccCc
Confidence            9999999999    777753

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.10  E-value=1.8e-10  Score=78.41  Aligned_cols=69  Identities=32%  Similarity=0.799  Sum_probs=59.4

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC---CCCCCCCeeccCCCCceeeeC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG---VTCEHGGICAPIGDRGYRCQC  111 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~---~~C~~~~~C~~~~~~~~~C~C  111 (129)
                      ++|...  +|.++++|.+.. ++   |.|.|++||.|.     .|+.++  ++|..   ++|.+  .| ++..++|.|.|
T Consensus         6 ~~C~~~--pC~~~g~C~~~~-~~---~~C~C~~g~~g~-----~C~~~~--~eC~~~~~~~C~~--~C-~~~~g~~~C~C   69 (317)
T 3h5c_B            6 SPCISQ--PCLHNGSCQDSI-WG---YTCTCSPGYEGS-----NCELAK--NECHPERTDGCQH--FC-LPGQESYTCSC   69 (317)
T ss_dssp             CCTTSC--CCTTTCCCCCCS-SS---CCCCCSSSCCSS-----SSCCCS--SSCCTTCTTSCSS--EE-ECCSSSCEEEC
T ss_pred             CcCCCC--CCCCCCEeECCC-CC---eEEECCCCCcCC-----ccccCc--ccCCCCCCCCCcC--cc-ccCCCeeEEec
Confidence            788876  899999999887 76   999999999988     887244  89985   78987  89 99999999999


Q ss_pred             CCCCccCC
Q psy4097         112 EPGFTGES  119 (129)
Q Consensus       112 ~~g~~g~~  119 (129)
                      ++||.+..
T Consensus        70 ~~g~~~~~   77 (317)
T 3h5c_B           70 AQGYRLGE   77 (317)
T ss_dssp             CTTEECCT
T ss_pred             cccccccc
Confidence            99998753

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.05  E-value=1.7e-10  Score=70.51  Aligned_cols=67  Identities=22%  Similarity=0.604  Sum_probs=55.8

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCee-eeCCCCCcceeeecCCCCCcC--CCCCcCCc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATC-RETSDTVRSVISCTCPPGMGG--SGVGLMGC   79 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C-~~~~~g~~~~~~c~c~~g~~g--~~~~~~~c   79 (129)
                      .+++|+++.++|.| .|++||.  +..|+++ ++|.....+|..  +| .++. ++   |.|.|++||.+  .|.   .|
T Consensus        58 n~g~C~~~~~~y~C-~C~~G~~--G~~C~~~-deC~~~~~~C~~--~C~~n~~-g~---y~C~C~~Gy~l~~dG~---~C  124 (146)
T 1x7a_L           58 NGGLCKDDINSYEC-WCQVGFE--GKNCELD-ATCNIKNGRCKQ--FCKTGAD-SK---VLCSCTTGYRLAPDQK---SC  124 (146)
T ss_dssp             TTCEEEECSSCEEE-ECCSSEE--STTTCEE-CCTTSGGGSCSS--BCCCCSS-SC---CCCBCCTTEEECTTSS---SE
T ss_pred             CCCEeECCCCCEEE-ecCCCCc--CCcCCCC-ccccCCCCCCcC--CCCCCCC-CC---EEeEcCCCcEeCCCCC---cC
Confidence            46899999999999 9999999  8999998 999876557775  79 8888 87   99999999982  222   78


Q ss_pred             ccCC
Q psy4097          80 AYGM   83 (129)
Q Consensus        80 ~~~~   83 (129)
                      . ++
T Consensus       125 ~-~~  127 (146)
T 1x7a_L          125 K-PA  127 (146)
T ss_dssp             E-EC
T ss_pred             C-CC
Confidence            7 65

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.00  E-value=2.4e-10  Score=63.88  Aligned_cols=58  Identities=28%  Similarity=0.631  Sum_probs=48.6

Q ss_pred             CceeeeCCCceecccCCCCccc--CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           4 YVECINTQGYRKCGQCPHGWVG--DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~--~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++.|+++.++|.| .|++||.+  ++..|+++ ++|...  +|.  ++|+++. ++   |.|.|+ ++.|.
T Consensus        15 ~~~C~n~~g~y~C-~C~~G~~~~~~g~~C~di-deC~~~--~C~--~~C~n~~-g~---y~C~C~-g~~G~   74 (87)
T 1z6c_A           15 TAVCKNIPGDFEC-ECPEGYRYNLKSKSCEDI-DECSEN--MCA--QLCVNYP-GG---YTCYCD-GKKGF   74 (87)
T ss_dssp             TSSCCCBTTBCCC-SSSTTCEEETTTTEEECC-CHHHHS--CCS--SEECCCS-SS---CCEECC-SSSCC
T ss_pred             CCEeECCCCCEEE-ECCCCceECCCCCcCCCc-CeeCCC--CCC--CEEEccC-CC---EEEECC-CCcCC
Confidence            5789999999999 99999984  46799988 999865  897  6899998 88   999996 55444

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=74.81  Aligned_cols=81  Identities=36%  Similarity=0.885  Sum_probs=54.3

Q ss_pred             ceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCC
Q psy4097          13 YRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVT   92 (129)
Q Consensus        13 ~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~   92 (129)
                      .+.| .|.+||.  +..|+.  +.|..   +|.++++|.. .      +.|.|.+||.|.     .|+ .   +.|. .+
T Consensus       164 ~~~C-~C~~G~~--G~~C~~--~~C~~---~C~~~G~C~~-~------~~C~C~~G~~G~-----~C~-~---~~C~-~~  218 (324)
T 2ygq_A          164 RRIC-ECPDGFH--GPHCEK--ALCTP---RCMNGGLCVT-P------GFCICPPGFYGV-----NCD-K---ANCS-TT  218 (324)
T ss_dssp             TSCE-ECCTTEE--SSSSCE--ESSSS---CCCTTCEECS-S------CCEECCTTCBTT-----TTC-B---CCCS-SC
T ss_pred             CCeE-ECCCCCc--CCCCCC--CCCCC---CCCCCCEEcC-C------CEEeCCCCccCC-----Ccc-c---CcCC-CC
Confidence            3678 8888888  777765  35653   6777777853 2      468888888777     676 3   3453 46


Q ss_pred             CCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          93 CEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        93 C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      |.+++.| +.   .+.|.|++||.|+.|+.
T Consensus       219 C~~~G~C-~~---~~~C~C~~G~~G~~C~~  244 (324)
T 2ygq_A          219 CFNGGTC-FY---PGKCICPPGLEGEQCEI  244 (324)
T ss_dssp             CCSSCCB-SC---SSCBCCCTTCCTTTTC-
T ss_pred             CCCCCee-CC---CCeeeCCCCccCCCCCc
Confidence            7666677 43   25677777777777764

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.99  E-value=4.7e-10  Score=65.72  Aligned_cols=81  Identities=28%  Similarity=0.613  Sum_probs=58.0

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCC--CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGT--TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~--~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .+++|+++.++|.| .|.+||.  +..|+++.  ++|......|..  +|+++. ++   |.|.|++||.+.... ..|.
T Consensus        24 ~~g~C~~~~~~y~C-~C~~G~~--G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~---y~C~C~~G~~~~~~g-~~C~   93 (114)
T 1aut_L           24 GHGTCIDGIGSFSC-DCRSGWE--GRFCQREVSFLNCSLDNGGCTH--YCLEEV-GW---RRCSCAPGYKLGDDL-LQCH   93 (114)
T ss_dssp             TSEEECCCSSCCCE-EECTTEE--STTSCEECCSSSSSSGGGGCSS--EEEECS-SS---EEEECCTTEEECTTS-SCEE
T ss_pred             CcCCCCCCCCCcEe-eCCCCCc--CCCcCcCCcCCcCcCCCCCCCC--EeECCC-CC---EEeECCCCeeECCCC-CccC
Confidence            46889999999999 9999999  77898752  368754445654  899998 87   999999999854110 0565


Q ss_pred             cCCCCCCCCCCCCCCCCee
Q psy4097          81 YGMSGNPCGGVTCEHGGIC   99 (129)
Q Consensus        81 ~~~~~~~C~~~~C~~~~~C   99 (129)
                       ++     ...+|...+.|
T Consensus        94 -~~-----~~~pC~~~~~~  106 (114)
T 1aut_L           94 -PA-----VKFPCGRPWKR  106 (114)
T ss_dssp             -EC-----SSSCTTCCC--
T ss_pred             -cC-----cccCCCCCCcc
Confidence             43     23577766666

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.92  E-value=3.7e-10  Score=71.88  Aligned_cols=68  Identities=29%  Similarity=0.707  Sum_probs=29.8

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCC-CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc--CCCCCcCCc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGT-TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG--GSGVGLMGC   79 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~-~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~--g~~~~~~~c   79 (129)
                      .++.|+++.++|.| .|++||.  |..|++.+ ++|.....+|..  .|.++. ++   |.|.|++||.  +.|.   .|
T Consensus        52 ngg~C~n~~g~y~C-~C~~Gf~--G~~Ce~~i~deC~~~~~~C~~--~C~n~~-gs---y~C~C~~Gy~l~~dG~---~C  119 (195)
T 1nfu_B           52 NQGKCKDGLGEYTC-TCLEGFE--GKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NS---VVCSCARGYTLADNGK---AC  119 (195)
T ss_dssp             --------------------------------CCGGGTGGGGCSS--EEEEET-TE---EEEECCTTEEECTTSS---CE
T ss_pred             CCCEeECCCCCeeE-eCCCCce--eccccccccccccCCCCCCCC--EeECCC-CC---eEEECCCCceeCCCCC---cc
Confidence            45789999999999 9999999  88998754 779876557875  899988 87   9999999998  2222   78


Q ss_pred             ccCC
Q psy4097          80 AYGM   83 (129)
Q Consensus        80 ~~~~   83 (129)
                      . ++
T Consensus       120 ~-~~  122 (195)
T 1nfu_B          120 I-PT  122 (195)
T ss_dssp             E-ES
T ss_pred             c-cC
Confidence            7 54

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.91  E-value=4.5e-10  Score=67.64  Aligned_cols=68  Identities=29%  Similarity=0.685  Sum_probs=29.2

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCC-CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcC--CCCCcCCc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGT-TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGG--SGVGLMGC   79 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~-~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g--~~~~~~~c   79 (129)
                      .+++|+++.++|.| .|++||.  +..|++.+ ++|.....+|..  +|+++. ++   |.|.|++||..  .|.   .|
T Consensus        52 n~g~C~~~~~~y~C-~C~~G~~--G~~C~~~i~d~C~~~~~~C~~--~C~~~~-g~---y~C~C~~Gy~l~~~g~---~C  119 (134)
T 2vh0_B           52 NQGKCKDGLGEYTC-TCLEGFE--GKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NS---VVCSCARGYTLADNGK---AC  119 (134)
T ss_dssp             --------------------------------CCGGGTGGGGCSS--EEEEET-TE---EEEECCTTEEECTTSS---CE
T ss_pred             CcCCcccCCCCEEe-eCCCCcc--CCccccCCCCccccCCCCCCC--EeECCC-CC---EEEECCCCcEECCCCC---cc
Confidence            45789999999999 9999999  88998754 679875456775  899988 87   99999999982  222   67


Q ss_pred             ccCC
Q psy4097          80 AYGM   83 (129)
Q Consensus        80 ~~~~   83 (129)
                      . ++
T Consensus       120 ~-~~  122 (134)
T 2vh0_B          120 I-PT  122 (134)
T ss_dssp             E-ES
T ss_pred             C-cC
Confidence            7 54

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.91  E-value=1.2e-09  Score=55.54  Aligned_cols=48  Identities=23%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             CcccCCCCCCCCCCCCCCCCeec----cCCCCceeeeCCCCCccCCCccccccc
Q psy4097          78 GCAYGMSGNPCGGVTCEHGGICA----PIGDRGYRCQCEPGFTGESELLVPLLS  127 (129)
Q Consensus        78 ~c~~~~~~~~C~~~~C~~~~~C~----~~~~~~~~C~C~~g~~g~~c~~~~~~~  127 (129)
                      .|..++  ++|.++||.++++|+    ++..++|.|.|++||.|+.|+.....+
T Consensus         3 ~c~~~~--~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~~s   54 (55)
T 3u7u_G            3 SHLVKC--AEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVMAS   54 (55)
T ss_dssp             CCEEEC--CSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECCCC
T ss_pred             CCcccC--CCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCccC
Confidence            344245  899999999999993    245688999999999999999765544

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.91  E-value=1.4e-09  Score=74.42  Aligned_cols=86  Identities=33%  Similarity=0.823  Sum_probs=33.4

Q ss_pred             CceeeeCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCC
Q psy4097           4 YVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGM   83 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~   83 (129)
                      ++.|++   .+.| .|.+||.  +..|+.  +.|..   +|.++++|.. .      +.|.|++||.|.     .|+ . 
T Consensus       190 ~G~C~~---~~~C-~C~~G~~--G~~C~~--~~C~~---~C~~~G~C~~-~------~~C~C~~G~~G~-----~C~-~-  244 (324)
T 2ygq_A          190 GGLCVT---PGFC-ICPPGFY--GVNCDK--ANCST---TCFNGGTCFY-P------GKCICPPGLEGE-----QCE-I-  244 (324)
T ss_dssp             TCEECS---SCCE-ECCTTCB--TTTTCB--CCCSS---CCCSSCCBSC-S------SCBCCCTTCCTT-----TTC---
T ss_pred             CCEEcC---CCEE-eCCCCcc--CCCccc--CcCCC---CCCCCCeeCC-C------CeeeCCCCccCC-----CCC-c-
Confidence            445543   3568 8888887  667764  34542   6766667753 1      457777777766     554 2 


Q ss_pred             CCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          84 SGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        84 ~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                        ++|. .+|.+++.| +.   .+.|.|++||.|+.|+
T Consensus       245 --~~C~-~~C~~~g~C-~~---~~~C~C~~G~~G~~C~  275 (324)
T 2ygq_A          245 --SKCP-QPCRNGGKC-IG---KSKCKCSKGYQGDLCS  275 (324)
T ss_dssp             --------------------------------------
T ss_pred             --CcCC-CcCCCCCEE-CC---CCEEECCCCCcCCCCc
Confidence              3443 455555555 32   3456666666665554

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.90  E-value=1.5e-09  Score=51.42  Aligned_cols=36  Identities=33%  Similarity=0.750  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      ++|..+||.+++.| ++..++|.|.|++||.|..|+.
T Consensus         4 d~C~~~pC~ngg~C-~~~~~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            4 DQCESNPCLNGGSC-KDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CTTTTCCCCTTCEE-EEETTEEEEECCTTCCSTTSCC
T ss_pred             ccCCCCCCCCCCEe-EcCCCceEeECCCCCcCCccCC
Confidence            78988999999999 8889999999999999999873

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.89  E-value=2.1e-09  Score=65.34  Aligned_cols=68  Identities=19%  Similarity=0.385  Sum_probs=50.3

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCC---eeeeCCCC-CcceeeecCCCCCc--CCCCCc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLA---TCRETSDT-VRSVISCTCPPGMG--GSGVGL   76 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~---~C~~~~~g-~~~~~~c~c~~g~~--g~~~~~   76 (129)
                      .+++|+++.++|.| .|++||.  +..|++.+++|..-  ++.+++   +|+++. + +   |.|.|++||.  +.|.  
T Consensus        57 n~g~C~~~~g~y~C-~C~~G~~--G~~C~~~~~~c~~c--~~~~~~C~~~C~~~~-g~~---y~C~C~~Gy~l~~dG~--  125 (142)
T 2c4f_L           57 NGGSCKDQLQSYIC-FCLPAFE--GRNCETHKDDQLIC--VNENGGCEQYCSDHT-GTK---RSCRCHEGYSLLADGV--  125 (142)
T ss_dssp             TTCEEEEETTEEEE-ECCTTEE--STTSCEEGGGCCST--TTGGGGCSSEEECCT-TSC---CEEECCTTEEECTTSS--
T ss_pred             CCCEEeCCCCCEEe-eCCCCcc--CCccccCccccccc--cCCCCCccCEeECCC-CCC---EEEECCCCceECCCCC--
Confidence            46899999999999 9999999  88998622554321  233323   899988 7 7   9999999998  2232  


Q ss_pred             CCcccCC
Q psy4097          77 MGCAYGM   83 (129)
Q Consensus        77 ~~c~~~~   83 (129)
                       .|. ++
T Consensus       126 -~C~-~~  130 (142)
T 2c4f_L          126 -SCT-PT  130 (142)
T ss_dssp             -CEE-ES
T ss_pred             -CCC-CC
Confidence             687 55

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.89  E-value=4.7e-10  Score=65.02  Aligned_cols=59  Identities=20%  Similarity=0.480  Sum_probs=23.8

Q ss_pred             ceeeeCCCceecccCCCCccc-CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           5 VECINTQGYRKCGQCPHGWVG-DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~-~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      +.|+++.++|.| .|++||.+ ++..|+++ ++|.. ..+|.  ++|+++. ++   |.|.|++||.+.
T Consensus        41 ~~C~n~~g~y~C-~C~~Gy~g~~g~~C~di-deC~~-~~~C~--~~C~n~~-gs---y~C~C~~Gy~~~  100 (107)
T 2w2n_E           41 YVCNDLKIGYEC-LCPDGFQLVAQRRCEDI-DECQD-PDTCS--QLCVNLE-GG---YKCQCEEGFQLD  100 (107)
T ss_dssp             SEEECCSBSCEE-ECCTTCEEETTTEEEC----------------------------------------
T ss_pred             CEeEeCCCCeEE-ECCCCccccCCCccccc-cccCC-CCCcC--CeeecCC-CC---EEEECCCCceEC
Confidence            489999999999 99999994 45899988 99984 34786  6899998 87   999999999865

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.87  E-value=2.3e-09  Score=75.15  Aligned_cols=70  Identities=27%  Similarity=0.646  Sum_probs=55.3

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC-CCCcCCcccCCCCCCCC-CCCCCCCCeeccCCCCceeeeCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS-GVGLMGCAYGMSGNPCG-GVTCEHGGICAPIGDRGYRCQCE  112 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~-~~~~~~c~~~~~~~~C~-~~~C~~~~~C~~~~~~~~~C~C~  112 (129)
                      +||...  ++...+.|.++. ++   |.|.|++||.+. +.   .|+ ++  ++|. ..+|.+  .| ++..++|.|.|.
T Consensus         1 ~eC~~~--~~~c~~~C~~~~-~~---y~C~C~~G~~~~~~~---~C~-di--deC~~~~~C~~--~C-~n~~g~~~C~C~   65 (400)
T 3p5b_L            1 NECLDN--NGGCSHVCNDLK-IG---YECLCPDGFQLVAQR---RCE-DI--DECQDPDTCSQ--LC-VNLEGGYKCQCE   65 (400)
T ss_dssp             CCTTTT--GGGCSSEEEECS-SS---EEEECCTTEEECSSS---CEE-EC--CCCSTTSSCSS--CC-BCCSSSCBCCCC
T ss_pred             CcccCC--CCCCCCEeECCC-CC---eEEECCCCCCcCCCC---ccc-Cc--hhhhccCCCCC--cc-CCCccceeeecc
Confidence            467665  443346899998 87   999999999832 22   798 88  9997 478876  79 999999999999


Q ss_pred             CCCccCC
Q psy4097         113 PGFTGES  119 (129)
Q Consensus       113 ~g~~g~~  119 (129)
                      +||.+..
T Consensus        66 ~g~~~~~   72 (400)
T 3p5b_L           66 EGFQLDP   72 (400)
T ss_dssp             TTCCCCT
T ss_pred             ccccccc
Confidence            9998653

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.86  E-value=7e-09  Score=73.31  Aligned_cols=99  Identities=28%  Similarity=0.717  Sum_probs=67.3

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcccCC----------CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGT----------TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~----------~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      .++.|.+  +.+.| .|.+||.  |..|+...          ++|.. ..+|.+++.|..   +.   +.|.|.+||.|.
T Consensus       207 ~~G~C~~--~~g~C-~C~~G~~--G~~Ce~~C~~g~~g~~C~~~C~~-~~~C~~~g~C~~---~~---~~C~C~~G~~G~  274 (423)
T 2gy5_A          207 NNGVCHE--DTGEC-ICPPGFM--GRTCEKACELHTFGRTCKERCSG-QEGCKSYVFCLP---DP---YGCSCATGWKGL  274 (423)
T ss_dssp             TTCEECT--TTCCE-ECCTTEE--STTSCEECCTTEESTTSCEECCS-TTTTTTCCEEET---TT---TEEECCBTCBSG
T ss_pred             CCCEEEC--CCCcE-eCCCCcc--CCCcccccCCCCCCCCcCccCCC-CCCCCCCCEECC---CC---CeEEeCCCcccc
Confidence            3567765  45789 9999999  88887420          12332 336777778853   33   899999999987


Q ss_pred             CCCcCCcccCCC-----CCCCC-CCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          73 GVGLMGCAYGMS-----GNPCG-GVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        73 ~~~~~~c~~~~~-----~~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                           .|+ ..-     .+.|. .-+|.+++.| .+..   .|.|++||.|..|+..
T Consensus       275 -----~C~-~~C~~G~~G~~C~~~C~C~ngg~C-~~~~---~C~C~~G~~G~~Ce~~  321 (423)
T 2gy5_A          275 -----QCN-EACHPGFYGPDCKLRCSCNNGEMC-DRFQ---GCLCSPGWQGLQCERE  321 (423)
T ss_dssp             -----GGC-BCCCTTBCSBTTCCBCCCTTCCEE-ETTT---EEECCTTCBSTTSCBC
T ss_pred             -----ccc-CccCCCCcCCcccccccCCCCCEe-cCCC---ceECCCCCcCCCCccC
Confidence                 776 310     01222 1268888899 6543   4999999999999865

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.85  E-value=8.5e-10  Score=81.89  Aligned_cols=95  Identities=26%  Similarity=0.621  Sum_probs=71.0

Q ss_pred             CceeeeCCCcee---cccCCCCcccCCCCcccCC--------CCccCCC--CCCCCCCeeeeCCCCCcceeeecCC----
Q psy4097           4 YVECINTQGYRK---CGQCPHGWVGDGTTCRQGT--------TGCSVQN--GGCHPLATCRETSDTVRSVISCTCP----   66 (129)
Q Consensus         4 ~~~C~~~~g~~~---C~~C~~g~~~~~~~C~~~~--------~~C~~~~--~~C~~~~~C~~~~~g~~~~~~c~c~----   66 (129)
                      ++.|.+..|.+.   | .|.+||.  |..|+...        ++|....  .+|.++++|.  .      +.|.|.    
T Consensus       445 ~~~C~~g~G~~~~G~C-~C~~Gy~--G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~------g~C~C~~~~~  513 (690)
T 3fcs_B          445 SHRCNNGNGTFECGVC-RCGPGWL--GSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL--C------GQCVCHSSDF  513 (690)
T ss_dssp             CTTTTTTSEEEETTEE-EECTTCC--SSSSCCSCC------CCCCSSSSSSCGGGGSEEEC--S------SSEEECCCSS
T ss_pred             CCcccCCCCeEeCCce-EeCCCcc--CCceeeccCccCCccCCcCCCCCCCCCCCCCCEEE--C------CeeEeecCCC
Confidence            456766677777   9 9999999  88886432        4576531  3588888886  3      469999    


Q ss_pred             CCCcCCCCCcCCcccCCCCCCCCC---CCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          67 PGMGGSGVGLMGCAYGMSGNPCGG---VTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        67 ~g~~g~~~~~~~c~~~~~~~~C~~---~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      +||.|.     .|+.+.  +.|..   .+|.+++.| ..    +.|.|++||.|..|+
T Consensus       514 ~Gy~G~-----~Ce~~~--~~C~~~~~~~C~~~G~C-~~----g~C~C~~Gy~G~~Ce  559 (690)
T 3fcs_B          514 GKITGK-----YCECDD--FSCVRYKGEMCSGHGQC-SC----GDCLCDSDWTGYYCN  559 (690)
T ss_dssp             CCCBST-----TSCBCS--SCCCBSSSSBGGGSEEE-ET----TEEEECTTEESSSSC
T ss_pred             CCeeCC-----CcCccc--CcCcCCCCCCCCCCCEe-cC----CeeECcCCCcCCCCc
Confidence            999988     886233  67863   468877889 55    689999999999998

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.83  E-value=4.6e-09  Score=59.05  Aligned_cols=59  Identities=25%  Similarity=0.671  Sum_probs=48.2

Q ss_pred             eeeeCCCceecccCCCCcccCCCCcc--cCCCCccCCCCCCCCCCeeeeCC-CCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097           6 ECINTQGYRKCGQCPHGWVGDGTTCR--QGTTGCSVQNGGCHPLATCRETS-DTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus         6 ~C~~~~g~~~C~~C~~g~~~~~~~C~--~~~~~C~~~~~~C~~~~~C~~~~-~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .|++..++|.| .|++||.    .|+  ++ ++|...  +|.++++|++.. .++   |.|.|++||.|.     .|+
T Consensus        24 pC~n~~~~y~C-~C~~G~~----~C~~~~~-~~C~~~--pC~ngg~C~~~~~~~~---~~C~C~~G~~G~-----~Ce   85 (91)
T 1tpg_A           24 PVLRSNRVEYC-WCNSGRA----QCHSVPV-KSCSEP--RCFNGGTCQQALYFSD---FVCQCPEGFAGK-----SCE   85 (91)
T ss_dssp             ECSSSSCEEEE-ECSSSCC----BCCEECE-EECSSC--CSCTTCEEEEESSSSC---EEEECCTTCBSS-----SCC
T ss_pred             ccccCCCCcEe-ECCCCCc----ccccCcC-CcccCC--CCCCCCEeecCCCCCC---eEeECCCCCcCC-----cCC
Confidence            36677789999 9999996    786  45 889876  899999999753 033   999999999988     886

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.76  E-value=1.7e-09  Score=75.50  Aligned_cols=72  Identities=31%  Similarity=0.780  Sum_probs=18.5

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC--CCCcCCcccCCCCCCCC-CCCCCCCCeeccCCCCceeeeC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS--GVGLMGCAYGMSGNPCG-GVTCEHGGICAPIGDRGYRCQC  111 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~--~~~~~~c~~~~~~~~C~-~~~C~~~~~C~~~~~~~~~C~C  111 (129)
                      ++|...+..|.  ..|.+.. ++   |.|.|++||...  +.   .|. ++  ++|. ..+|.+  .| ++..++|.|.|
T Consensus         4 ~~C~~~~~~c~--~~C~~~~-g~---~~C~C~~G~~l~~~~~---~C~-d~--~eC~~~~~C~~--~C-~~~~g~~~C~C   68 (386)
T 3v65_B            4 ENCNVNNGGCA--QKCQMIR-GA---VQCTCHTGYRLTEDGR---TCQ-DV--NECAEEGYCSQ--GC-TNSEGAFQCWC   68 (386)
T ss_dssp             ------------------------------------------------------------CCTT--EE-C-----CCEEC
T ss_pred             CcccCCCCCCC--CCCcCCC-CC---cEeECCCCceECCCCC---ccC-cc--ceeCCcCcccC--cC-CCCCCCCeEEE
Confidence            78887644565  3798777 77   999999999822  22   798 88  9997 578987  49 99999999999


Q ss_pred             CCCCc----cCCCc
Q psy4097         112 EPGFT----GESEL  121 (129)
Q Consensus       112 ~~g~~----g~~c~  121 (129)
                      ++||.    +..|+
T Consensus        69 ~~g~~l~~d~~~C~   82 (386)
T 3v65_B           69 EAGYELRPDRRSCK   82 (386)
T ss_dssp             CTTEEECTTSSCEE
T ss_pred             CCCceEcCCCCeEC
Confidence            99998    66675

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.75  E-value=2.2e-09  Score=63.26  Aligned_cols=72  Identities=21%  Similarity=0.475  Sum_probs=52.3

Q ss_pred             cCCCCccCCCCCCCCCCeeeeC-CCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeee
Q psy4097          32 QGTTGCSVQNGGCHPLATCRET-SDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQ  110 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~-~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~  110 (129)
                      ++ ++|...  +|.+  +|+++ . ++   |.|.|++||.+.......|.     ++|...+|.  +.| ++ .++|.|.
T Consensus         3 di-deC~~~--pC~~--~C~~~~~-g~---y~C~C~~Gy~g~~~~~~~C~-----~~C~~~~C~--~~C-~~-~~~y~C~   64 (118)
T 1dx5_I            3 PV-DPCFRA--NCEY--QCQPLDQ-TS---YLCVCAEGFAPIPHEPHRCQ-----MFCNQTACP--ADC-DP-NTQASCE   64 (118)
T ss_dssp             CC-CGGGGC--CCSS--EEEECSS-SC---EEEECCTTEEEETTEEEEEE-----ECCCSSEEE--CEE-CT-TSTTCEE
T ss_pred             cc-ccCCCC--CCCC--CCCCCCC-CC---EEeECCCCccccCCCCCccc-----cccCCCCCC--Ccc-cC-CCCeEeE
Confidence            44 889765  8984  89998 7 77   99999999987722111233     345556666  479 77 5889999


Q ss_pred             CCCCCc---cCCCc
Q psy4097         111 CEPGFT---GESEL  121 (129)
Q Consensus       111 C~~g~~---g~~c~  121 (129)
                      |++||.   |..|+
T Consensus        65 C~~Gy~~~~g~~C~   78 (118)
T 1dx5_I           65 CPEGYILDDGFICT   78 (118)
T ss_dssp             CCTTEEEETTTEEE
T ss_pred             CCCCccCCCCCccc
Confidence            999999   66663

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.72  E-value=1.6e-08  Score=70.85  Aligned_cols=60  Identities=20%  Similarity=0.463  Sum_probs=51.6

Q ss_pred             CceeeeCCCceecccCCCCcc-cCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           4 YVECINTQGYRKCGQCPHGWV-GDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~-~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ...|++++++|.| .|++||. .++..|+++ +||.. ..+|..  .|.++. ++   |.|.|.+||.+.
T Consensus        11 ~~~C~~~~~~y~C-~C~~G~~~~~~~~C~di-deC~~-~~~C~~--~C~n~~-g~---~~C~C~~g~~~~   71 (400)
T 3p5b_L           11 SHVCNDLKIGYEC-LCPDGFQLVAQRRCEDI-DECQD-PDTCSQ--LCVNLE-GG---YKCQCEEGFQLD   71 (400)
T ss_dssp             SSEEEECSSSEEE-ECCTTEEECSSSCEEEC-CCCST-TSSCSS--CCBCCS-SS---CBCCCCTTCCCC
T ss_pred             CCEeECCCCCeEE-ECCCCCCcCCCCcccCc-hhhhc-cCCCCC--ccCCCc-cc---eeeecccccccc
Confidence            3589999999999 9999998 467899998 99984 458875  799998 88   999999999855

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.71  E-value=4.7e-11  Score=79.02  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=74.5

Q ss_pred             eeeeCCCceecccCCCCcc-cCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCccc---
Q psy4097           6 ECINTQGYRKCGQCPHGWV-GDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAY---   81 (129)
Q Consensus         6 ~C~~~~g~~~C~~C~~g~~-~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~---   81 (129)
                      .+.|..|++.+ .|.+|.. ..+..++....++..   +|.++++|++.. .+   |.|.|+.||.+.     .|+.   
T Consensus         5 ~~~n~~Gg~s~-~~~pgg~~~~g~~~~~n~~~~~~---~c~ngG~C~~g~-~~---y~C~Cp~Gf~G~-----~Ce~ni~   71 (267)
T 4fbr_A            5 LVQNQWGGSQA-TWNPGGLWLIGARDKQNVVALDI---KSDDGGKTLKGT-MT---YNGEGPIGFRGT-----LSSANNY   71 (267)
T ss_dssp             EEEEECSSTTS-CCEEEEEEECCCCSSCCEEEEEE---ECSSTTSEEEEE-EE---ETTSCCEEEEEE-----ECSTTEE
T ss_pred             eEeecCCcccC-CcCCCCceeeccccccccccCCC---CcCCCCeecCCC-CC---eEEeCCCCcccc-----ccccccc
Confidence            35677788999 9998854 224444332123332   688899999887 76   999999999876     3431   


Q ss_pred             --------------------------CCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          82 --------------------------GMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        82 --------------------------~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                                                ..  ++|.+.||.++++| ++...+|+|.|+.||+|..|+..
T Consensus        72 ec~~~~~c~s~pC~nggtc~~G~~c~~~--~eC~s~pC~ngG~C-~~~~~sy~C~C~~Gf~G~~Ce~~  136 (267)
T 4fbr_A           72 TVENQWGGTSAPWQPGGVWVLGARDKQN--IVAVSIKSNDGGKT-LTGTTTYNGEGPIGFKSEVTDGD  136 (267)
T ss_dssp             EEEEESSSTTSCEEEEEEEECCCCSSCC--EEEEEEECSSTTSE-EEEEEEETTSCCEEEEEEECCCC
T ss_pred             ccccccCcCCCcccCCCeeeccCccccc--cccCCCCCCCCCEE-ecCCccEEeeCCCCccccCCCCC
Confidence                                      22  34556788888999 88889999999999999998754

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.67  E-value=3.3e-08  Score=67.27  Aligned_cols=72  Identities=21%  Similarity=0.564  Sum_probs=56.4

Q ss_pred             CCceeeeCCCceecccCCCCcccCCCCcc-cCCCCccCC-CCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWVGDGTTCR-QGTTGCSVQ-NGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~~~~~~C~-~~~~~C~~~-~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .++.|++..++|.| .|.+||.  +..|+ ++ ++|... ..+|.+  .|.++. ++   |.|.|++||.+... ...|.
T Consensus        15 ~~g~C~~~~~~~~C-~C~~g~~--g~~C~~~~-~eC~~~~~~~C~~--~C~~~~-g~---~~C~C~~g~~~~~~-~~~C~   83 (317)
T 3h5c_B           15 HNGSCQDSIWGYTC-TCSPGYE--GSNCELAK-NECHPERTDGCQH--FCLPGQ-ES---YTCSCAQGYRLGED-HKQCV   83 (317)
T ss_dssp             TTCCCCCCSSSCCC-CCSSSCC--SSSSCCCS-SSCCTTCTTSCSS--EEECCS-SS---CEEECCTTEECCTT-SSCCE
T ss_pred             CCCEeECCCCCeEE-ECCCCCc--CCccccCc-ccCCCCCCCCCcC--ccccCC-Ce---eEEecccccccccc-ccccc
Confidence            46789999999999 9999999  89998 66 999862 258986  899988 87   99999999986421 11466


Q ss_pred             cCCCCCCC
Q psy4097          81 YGMSGNPC   88 (129)
Q Consensus        81 ~~~~~~~C   88 (129)
                       +.  ++|
T Consensus        84 -~~--~~c   88 (317)
T 3h5c_B           84 -PH--DQC   88 (317)
T ss_dssp             -EC--SSC
T ss_pred             -cc--ccc
Confidence             55  444

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.67  E-value=3e-08  Score=48.35  Aligned_cols=36  Identities=22%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             CCCCC---CCCCCCeecc--CCCCceeeeCCCCCccCCCccc
Q psy4097          87 PCGGV---TCEHGGICAP--IGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        87 ~C~~~---~C~~~~~C~~--~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      +|...   ||.+++.| +  +..++|.|.|++||.|..|+..
T Consensus         2 ~C~~~~~~pC~ngg~C-~~~~~~~~~~C~C~~G~~G~~Ce~~   42 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVX-MHIESLDSYTCNCVIGYSGDRCQTR   42 (45)
T ss_dssp             CCTTCCSSCCSSSCEE-EECTTTSSEEEECCTTEETTTTCEE
T ss_pred             CcccCCCCCCCCCCEE-EeecCCCCEEEEcCCCCcCCcCCcc
Confidence            45544   89999999 6  7788999999999999999865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.67  E-value=7.1e-08  Score=72.08  Aligned_cols=69  Identities=33%  Similarity=0.829  Sum_probs=54.8

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC-CCCcCCcccCCCCCCCC-CCCCCCCCeeccCCCCceeeeCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS-GVGLMGCAYGMSGNPCG-GVTCEHGGICAPIGDRGYRCQCE  112 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~-~~~~~~c~~~~~~~~C~-~~~C~~~~~C~~~~~~~~~C~C~  112 (129)
                      ++|......|.  ..|.++. ++   |.|.|++||.+. +.   .|. ++  ++|. ..+|.+  .| ++..++|+|.|+
T Consensus       295 ~eC~~~~~~C~--~~C~~~~-~~---~~C~C~~G~~~~~~~---~C~-di--deC~~~~~C~~--~C-~n~~g~y~C~C~  359 (699)
T 1n7d_A          295 NECLDNNGGCS--HVCNDLK-IG---YECLCPDGFQLVAQR---RCE-DI--DECQDPDTCSQ--LC-VNLEGGYKCQCE  359 (699)
T ss_dssp             CCTTSSTTTSC--TTCCCCT-TC---CCCCCCSSSCCCSSS---CCC-CC--CCCSSSSSCTT--TC-CBCSSCBCCCCC
T ss_pred             ccccccccCcC--CCcccCC-CC---cEEeCCCCeEcCCCC---ccc-Cc--cccCCCCcccc--cc-ccCCCCeeeeee
Confidence            67766545564  4698888 77   999999999842 22   798 88  9997 567865  79 999999999999


Q ss_pred             CCCccC
Q psy4097         113 PGFTGE  118 (129)
Q Consensus       113 ~g~~g~  118 (129)
                      +||.+.
T Consensus       360 ~G~~~~  365 (699)
T 1n7d_A          360 EGFQLD  365 (699)
T ss_dssp             SSCBCC
T ss_pred             cccccC
Confidence            999854

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.66  E-value=2.9e-08  Score=50.16  Aligned_cols=38  Identities=26%  Similarity=0.654  Sum_probs=33.0

Q ss_pred             CCCCCC---CCCCCCeecc--CCCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCGGV---TCEHGGICAP--IGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~---~C~~~~~C~~--~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      ++|...   ||.+++.| +  +..++|.|.|++||.|..|+...
T Consensus         4 ~~C~~~~~~pC~ngg~C-~~~~~~~~~~C~C~~G~~G~~Ce~~~   46 (53)
T 1egf_A            4 PGCPSSYDGYCLNGGVC-MHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CCCCTTSSCSSCSSCEE-EEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             ccCCCCCCCcCCCCcEE-EeeCCCCCEEEECCCCCcCCcCCccC
Confidence            678765   99999999 7  78899999999999999998653

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.56  E-value=8.7e-09  Score=63.83  Aligned_cols=75  Identities=23%  Similarity=0.432  Sum_probs=49.4

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC--CCCcCCcccCCCCCC--CCC--CCC--CCCCeeccCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS--GVGLMGCAYGMSGNP--CGG--VTC--EHGGICAPIG  103 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~--~~~~~~c~~~~~~~~--C~~--~~C--~~~~~C~~~~  103 (129)
                      ++ ++|.. ..+|. +++|+++. ++   |.|.|++||.+.  +.   .|. ++  ++  |..  .+|  ..++.| ++.
T Consensus         2 di-deC~~-~~~C~-~~~C~n~~-gs---y~C~C~~Gy~~~~~g~---~C~-d~--~~~~C~~~~~~c~~~~~~~C-~~~   67 (162)
T 1uzk_A            2 DV-NECLD-PTTCI-SGNCVNTP-GS---YICDCPPDFELNPTRV---GCV-DT--RSGNCYLDIRPRGDNGDTAC-SNE   67 (162)
T ss_dssp             CC-CGGGS-TTSSB-TSEEEEET-TE---EEEECCTTCEECTTSS---BEE-CC--CCEEEEEEC----------C-EEE
T ss_pred             cc-ccCCC-CCCCC-CCEeECCC-CC---EEEeCCCCCeECCCCC---ccc-CC--CCCcccCCCcccCCCCCCcc-cCC
Confidence            45 89985 34897 68999999 88   999999999843  22   788 77  65  753  334  235578 666


Q ss_pred             CC----ceeeeCCCCCc-cCCC
Q psy4097         104 DR----GYRCQCEPGFT-GESE  120 (129)
Q Consensus       104 ~~----~~~C~C~~g~~-g~~c  120 (129)
                      .+    +|.|.|++||. +..|
T Consensus        68 ~~~~~~~~~C~C~~G~~~~~~C   89 (162)
T 1uzk_A           68 IGVGVSKASCCCSLGKAWGTPC   89 (162)
T ss_dssp             EEEEECHHHHHTTTCCEETTTT
T ss_pred             cCCcccCceeeCCCCCCcCCCc
Confidence            55    68888888886 4444

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.56  E-value=6.2e-08  Score=72.08  Aligned_cols=86  Identities=23%  Similarity=0.539  Sum_probs=66.7

Q ss_pred             eecccCC----CCcccCCCCcccCCCCccCC-CCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc--cCCCCC
Q psy4097          14 RKCGQCP----HGWVGDGTTCRQGTTGCSVQ-NGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA--YGMSGN   86 (129)
Q Consensus        14 ~~C~~C~----~g~~~~~~~C~~~~~~C~~~-~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~--~~~~~~   86 (129)
                      +.| .|.    +||.  |..|+...++|... ..+|.+++.|..        +.|.|.+||.|.     .|+  ...  +
T Consensus       504 g~C-~C~~~~~~Gy~--G~~Ce~~~~~C~~~~~~~C~~~G~C~~--------g~C~C~~Gy~G~-----~CeC~~~~--~  565 (690)
T 3fcs_B          504 GQC-VCHSSDFGKIT--GKYCECDDFSCVRYKGEMCSGHGQCSC--------GDCLCDSDWTGY-----YCNCTTRT--D  565 (690)
T ss_dssp             SSE-EECCCSSCCCB--STTSCBCSSCCCBSSSSBGGGSEEEET--------TEEEECTTEESS-----SSCEECCC--T
T ss_pred             Cee-EeecCCCCCee--CCCcCcccCcCcCCCCCCCCCCCEecC--------CeeECcCCCcCC-----CCccCCCC--C
Confidence            589 999    9999  88997433778742 236888888853        479999999998     775  124  7


Q ss_pred             CCCC---CCCCCCCeeccCCCCceeeeC-CCCCccCCCcc
Q psy4097          87 PCGG---VTCEHGGICAPIGDRGYRCQC-EPGFTGESELL  122 (129)
Q Consensus        87 ~C~~---~~C~~~~~C~~~~~~~~~C~C-~~g~~g~~c~~  122 (129)
                      .|..   .+|.+++.| +.    ..|.| ++||.|..|+.
T Consensus       566 ~C~~~~g~~C~~~G~C-~~----g~C~C~~~Gy~G~~Ce~  600 (690)
T 3fcs_B          566 TCMSSNGLLCSGRGKC-EC----GSCVCIQPGSYGDTCEK  600 (690)
T ss_dssp             TTBCTTSSBTSSSCEE-ET----TEEECCSTTCBSTTSCB
T ss_pred             cccCCCCCCCCCCCEE-eC----CEEECCCCCccCCCcCc
Confidence            7874   579988999 55    28999 99999999986

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.55  E-value=1e-08  Score=53.19  Aligned_cols=40  Identities=23%  Similarity=0.592  Sum_probs=34.6

Q ss_pred             cccCCCCCCCCCCCCCCC--CeeccCCCCceeeeCCCCCc-cCCCcc
Q psy4097          79 CAYGMSGNPCGGVTCEHG--GICAPIGDRGYRCQCEPGFT-GESELL  122 (129)
Q Consensus        79 c~~~~~~~~C~~~~C~~~--~~C~~~~~~~~~C~C~~g~~-g~~c~~  122 (129)
                      +. .+  ++|.++||.++  +.| ++..++|.|.|++||. |..|+.
T Consensus         8 ~~-~~--d~C~snPC~nga~gtC-~~~~g~y~C~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B            8 SE-TP--AACSSNPCGPEAAGTC-KETNSGYICRCNQGYRISLDGTG   50 (61)
T ss_dssp             TT-SC--CHHHHCSSCSSSCCEE-EECSSEEEEECCTTEEEEECSSS
T ss_pred             cC-CC--CcCcCCCCcCCCcccc-ccCCCceEeECCCCCccCCCCCC
Confidence            44 55  88888999988  799 8999999999999999 999864

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.52  E-value=9.3e-08  Score=67.60  Aligned_cols=84  Identities=26%  Similarity=0.632  Sum_probs=60.6

Q ss_pred             eecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCC---------
Q psy4097          14 RKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMS---------   84 (129)
Q Consensus        14 ~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~---------   84 (129)
                      +.| .|.+||.  +..|+..   |.    +|.++++|.+..      +.|.|++||.|.     .|+ ...         
T Consensus       185 ~~c-~C~~g~~--G~~C~~~---C~----~C~~~G~C~~~~------g~C~C~~G~~G~-----~Ce-~~C~~g~~g~~C  242 (423)
T 2gy5_A          185 IVR-RCEAQKW--GPECNHL---CT----ACMNNGVCHEDT------GECICPPGFMGR-----TCE-KACELHTFGRTC  242 (423)
T ss_dssp             EEC-SSCTTEE--STTSCEE---CC----CCCTTCEECTTT------CCEECCTTEEST-----TSC-EECCTTEESTTS
T ss_pred             cCC-cCCCCCC--CCCCCCC---CC----CCCCCCEEECCC------CcEeCCCCccCC-----Ccc-cccCCCCCCCCc
Confidence            357 7888888  7777642   42    788889997633      689999999998     776 310         


Q ss_pred             CCCCC-CCCCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          85 GNPCG-GVTCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        85 ~~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      .++|. ..+|.+++.| .  .+.|.|.|++||.|..|+.
T Consensus       243 ~~~C~~~~~C~~~g~C-~--~~~~~C~C~~G~~G~~C~~  278 (423)
T 2gy5_A          243 KERCSGQEGCKSYVFC-L--PDPYGCSCATGWKGLQCNE  278 (423)
T ss_dssp             CEECCSTTTTTTCCEE-E--TTTTEEECCBTCBSGGGCB
T ss_pred             CccCCCCCCCCCCCEE-C--CCCCeEEeCCCcccccccC
Confidence            01333 3557777777 3  4678999999999998874

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.51  E-value=2.5e-08  Score=52.21  Aligned_cols=40  Identities=30%  Similarity=0.614  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCeeccC-----CCCceeeeCCCCCccCCCcccccc
Q psy4097          86 NPCGGVTCEHGGICAPI-----GDRGYRCQCEPGFTGESELLVPLL  126 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~-----~~~~~~C~C~~g~~g~~c~~~~~~  126 (129)
                      ++|..+||.+++.| ++     ..++|.|.|++||.|..|+.....
T Consensus         7 ~~C~~~pC~ngG~C-~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~   51 (63)
T 1hae_A            7 AEKEKTFCVNGGEC-FMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             CHHHHTTSCTTCEE-EEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CCCCCCcCCCCcEE-ecCCccCCCCCEEEECCCCCcCCccCcCcCc
Confidence            56667899999999 64     678999999999999999865443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=1.9e-07  Score=70.67  Aligned_cols=68  Identities=34%  Similarity=0.838  Sum_probs=51.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcC-CCCCcCCcccCCCCCCCC-CCCCCCCCeeccCCCCceeeeCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGG-SGVGLMGCAYGMSGNPCG-GVTCEHGGICAPIGDRGYRCQCE  112 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g-~~~~~~~c~~~~~~~~C~-~~~C~~~~~C~~~~~~~~~C~C~  112 (129)
                      ++|......|.  ..|.++. ++   |.|.|++||.. .+.   .|. ++  ++|. ..+|.+  .| ++..++|+|.|+
T Consensus       313 ~~C~~~~~~C~--~~C~~~~-~~---y~C~C~~Gy~l~~g~---~C~-di--deC~~~~~C~~--~C-~n~~gsy~C~C~  377 (791)
T 3m0c_C          313 NECLDNNGGCS--HVCNDLK-IG---YECLCPDGFQLVAQR---RCE-DI--DECQDPDTCSQ--LC-VNLEGGYKCQCE  377 (791)
T ss_dssp             CSTTTGGGGCS--SEEEECS-BS---EEEECCTTCEEETTT---EEE-CC--CCCSSSSSCTT--TC-CBCSSCBCCCCC
T ss_pred             ccccccccCcc--ccccCCC-CC---cccCCCCCCccCCCC---ccc-cC--cccCCCCCCCC--ee-ecCCCCceeecC
Confidence            44543323343  3799988 77   99999999963 222   798 88  9997 456765  79 999999999999


Q ss_pred             CCCcc
Q psy4097         113 PGFTG  117 (129)
Q Consensus       113 ~g~~g  117 (129)
                      +||.+
T Consensus       378 ~Gy~l  382 (791)
T 3m0c_C          378 EGFQL  382 (791)
T ss_dssp             SSEEC
T ss_pred             CCCEe
Confidence            99975

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.47  E-value=5.2e-08  Score=47.68  Aligned_cols=37  Identities=30%  Similarity=0.549  Sum_probs=30.2

Q ss_pred             CCCCC---CCCCCCCeeccC--CCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCGG---VTCEHGGICAPI--GDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~---~~C~~~~~C~~~--~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      ++|..   +||.+ +.| ..  ..++|.|.|++||.|.+|+...
T Consensus         4 ~~C~~~~~~pC~n-G~C-~~~~~~~~~~C~C~~GytG~~Ce~~~   45 (46)
T 1k36_A            4 TKCSSDMNGYCLH-GQC-IYLVDMSQNYCRCEVGYTGVRCEHFF   45 (46)
T ss_dssp             ECCCTTCCSSCSS-EEE-EEETTTTEEEEEECTTCSSTTSCCCC
T ss_pred             ccCCCCCCCCCCC-CEe-eccCCCCCEEEECCCCCccCCCCccc
Confidence            56765   89988 699 54  3478999999999999999754

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.47  E-value=3.8e-08  Score=59.95  Aligned_cols=52  Identities=31%  Similarity=0.665  Sum_probs=44.7

Q ss_pred             eecccCCCCccc-CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          14 RKCGQCPHGWVG-DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        14 ~~C~~C~~g~~~-~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      |.| .|++||.. ++..|+++ ++|...+.+|.+ ++|+++. ++   |.|.|++||.+.
T Consensus        88 ~~C-~C~~Gy~~~~g~~C~di-deC~~~~~~C~~-g~C~n~~-g~---y~C~C~~Gy~g~  140 (147)
T 2w86_A           88 VDP-ICGKGYSRIKGTQCEDI-DECEVFPGVCKN-GLCVNTR-GS---FKCQCPSGMTLD  140 (147)
T ss_dssp             CCT-TTCTTEEEEETTEEEEC-CHHHHSTTCSSS-SEEEEET-TE---EEEECCTTCCBC
T ss_pred             Ccc-cCCCccccCCCCccCcc-ccccCCCCCCCC-CEEECCC-CC---EEeeCCCCCccC
Confidence            788 99999973 58899988 999976567985 5999999 88   999999999876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.41  E-value=4.9e-08  Score=68.09  Aligned_cols=56  Identities=29%  Similarity=0.774  Sum_probs=15.0

Q ss_pred             eeeeCCCceecccCCCCcc--cCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc
Q psy4097           6 ECINTQGYRKCGQCPHGWV--GDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG   70 (129)
Q Consensus         6 ~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~   70 (129)
                      .|.+..|+|.| .|++||.  .++..|+++ ++|.. ..+|..  .|.++. ++   |.|.|.+||.
T Consensus        16 ~C~~~~g~~~C-~C~~G~~l~~~~~~C~d~-~eC~~-~~~C~~--~C~~~~-g~---~~C~C~~g~~   73 (386)
T 3v65_B           16 KCQMIRGAVQC-TCHTGYRLTEDGRTCQDV-NECAE-EGYCSQ--GCTNSE-GA---FQCWCEAGYE   73 (386)
T ss_dssp             ---------------------------------------CCTT--EEC---------CCEECCTTEE
T ss_pred             CCcCCCCCcEe-ECCCCceECCCCCccCcc-ceeCC-cCcccC--cCCCCC-CC---CeEEECCCce
Confidence            68888899999 9999998  567899888 99973 458975  499998 88   9999999997

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.37  E-value=3.8e-08  Score=70.32  Aligned_cols=80  Identities=28%  Similarity=0.645  Sum_probs=37.1

Q ss_pred             eecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCC
Q psy4097          14 RKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTC   93 (129)
Q Consensus        14 ~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C   93 (129)
                      ..+ .|..+|.  +..|+.  ++|..   +|.+ +.|.. .      ..|.|.+||.|.     .|+ .   +.|.. +|
T Consensus       377 ~p~-~C~~~~~--g~~c~~--~~C~~---~C~n-G~C~~-~------~~C~C~~G~~G~-----~C~-~---~~C~~-~C  430 (463)
T 2wg3_C          377 MPE-ECRATVQ--PAQTLT--SECSR---LCRN-GYCTP-T------GKCCCSPGWEGD-----FCR-T---AKCEP-AC  430 (463)
T ss_dssp             SCG-GGCCCCC--CCCCCC--CHHHH---HCCS-EEECT-T------SCEEECTTEEST-----TSC-E---ECC-----
T ss_pred             ccc-cCCCCCc--CCCCcc--ccccC---CCCC-CccCC-C------CeECCCCCcCCC-----cCC-c---CcCCC-CC
Confidence            345 7888888  667764  57875   5886 78864 2      479999999998     886 3   67876 89


Q ss_pred             CCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          94 EHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        94 ~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      .+++.| ++.   +.|.|++||.|..|+..
T Consensus       431 ~~~g~C-~~~---~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          431 RHGGVC-VRP---NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             ------------------------------
T ss_pred             CCCCEE-CCC---CEEECCCCcccCCCCCC
Confidence            998899 543   69999999999999864

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.31  E-value=3.6e-07  Score=56.94  Aligned_cols=52  Identities=29%  Similarity=0.728  Sum_probs=44.5

Q ss_pred             CceecccCCCCcccCCCCcc-cCCCCccCCCCCCCCCCeeeeC-CCCCcceeeecCCCCCcCC
Q psy4097          12 GYRKCGQCPHGWVGDGTTCR-QGTTGCSVQNGGCHPLATCRET-SDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        12 g~~~C~~C~~g~~~~~~~C~-~~~~~C~~~~~~C~~~~~C~~~-~~g~~~~~~c~c~~g~~g~   72 (129)
                      +++.| .|.+||.  +..|+ ++ ++|.. ..+|.++++|+++ . ++   |.|.|++||.|.
T Consensus       112 ~~~~C-~C~~G~~--G~~C~~~~-~~C~~-~~~C~~~g~C~~~~~-~~---~~C~C~~G~~G~  165 (169)
T 2vj2_A          112 EPWQC-LCETNWG--GQLCDKDL-NYCGT-HQPCLNGGTCSNTGP-DK---YQCSCPEGYSGP  165 (169)
T ss_dssp             STTCC-EECTTEE--TTTTCEES-CHHHH-TCCCCTTCEEEECST-TC---EEEECCTTCCST
T ss_pred             CCCEE-eCCCCCC--CCcccCCC-CCCCC-CCCCCCCCEEcCCCC-CC---cEeECCCCCcCc
Confidence            46899 9999999  88998 55 88975 2389999999986 6 66   999999999988

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.29  E-value=3.1e-07  Score=46.24  Aligned_cols=35  Identities=31%  Similarity=0.628  Sum_probs=30.0

Q ss_pred             CCCCCCCCeecc--CCCCceeeeCCCCCccCCCccccc
Q psy4097          90 GVTCEHGGICAP--IGDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        90 ~~~C~~~~~C~~--~~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                      .+||.+++.| +  +..++|.|.|++||.|..|+...+
T Consensus        11 ~~pC~nGG~C-~~~~~~~~~~C~C~~GytG~~Ce~~~~   47 (53)
T 1nql_B           11 DGYCLHDGVC-MYIEALDKYACNCVVGYIGERCQYRDL   47 (53)
T ss_dssp             CCEECTTCEE-EEETTTTEEEEEECTTEESTTSCEECS
T ss_pred             CCCCCCCeEE-eeecCCCCEEEecCCCCcCCCCCcCCc
Confidence            4689999999 6  677899999999999999986543

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.26  E-value=1.3e-06  Score=41.01  Aligned_cols=32  Identities=25%  Similarity=0.694  Sum_probs=28.6

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++|...  +|.++++|++.. ++   |.|.|++||.|.
T Consensus         4 d~C~~~--pC~ngg~C~~~~-~~---~~C~C~~G~~G~   35 (39)
T 1edm_B            4 DQCESN--PCLNGGSCKDDI-NS---YECWCPFGFEGK   35 (39)
T ss_dssp             CTTTTC--CCCTTCEEEEET-TE---EEEECCTTCCST
T ss_pred             ccCCCC--CCCCCCEeEcCC-Cc---eEeECCCCCcCC
Confidence            788866  999999999988 77   999999999987

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.25  E-value=6.6e-07  Score=45.31  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CCcccCCCCccCCCCCCCCCCeeee-----CCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          28 TTCRQGTTGCSVQNGGCHPLATCRE-----TSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        28 ~~C~~~~~~C~~~~~~C~~~~~C~~-----~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ..|+...++|.+.  ||.++++|..     .. +.   |.|.|++||.|.     .|+
T Consensus         2 ~~c~~~~~eC~s~--pC~NgGtC~~~~~~d~~-~~---y~C~C~~g~~G~-----~CE   48 (55)
T 3u7u_G            2 TSHLVKCAEKEKT--FCVNGGECFMVKDLSNP-SR---YLCKCPNEFTGD-----RCQ   48 (55)
T ss_dssp             -CCEEECCSTTTT--TSCTTCEEEEECCC--C-CC---EEEEECTTEEST-----TSC
T ss_pred             CCCcccCCCCcCC--CCCCCCCcCCCCccCCC-CC---EeEeCCCCCcCC-----CcC
Confidence            3455444999977  9999999953     33 34   999999999999     887

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.19  E-value=7.4e-07  Score=57.64  Aligned_cols=87  Identities=28%  Similarity=0.691  Sum_probs=60.6

Q ss_pred             eecccCCCCcccCCCCcccCCC---------CccCC--CCCCCCCCeeeeCCCCCcceeeecCCCC------CcCCCCCc
Q psy4097          14 RKCGQCPHGWVGDGTTCRQGTT---------GCSVQ--NGGCHPLATCRETSDTVRSVISCTCPPG------MGGSGVGL   76 (129)
Q Consensus        14 ~~C~~C~~g~~~~~~~C~~~~~---------~C~~~--~~~C~~~~~C~~~~~g~~~~~~c~c~~g------~~g~~~~~   76 (129)
                      ..| .|.+||.  |..|+-..+         .|...  ..+|..+++|.  .      ..|.|.++      |.|.    
T Consensus       107 g~C-~C~~G~~--G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~------g~C~C~~gw~~~~~~~G~----  171 (217)
T 2p28_B          107 GIC-RCDTGYI--GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--C------GQCLCHTSDVPGKLIYGQ----  171 (217)
T ss_dssp             TEE-EECTTEE--STTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--T------TEEEECCCCSTTCCEEST----
T ss_pred             CEE-ECCCCcc--CCcccccCcccccccCCCcCCCCCCCCCCCCCCEEe--C------CceECCCCCCCcccEECC----
Confidence            479 9999999  777752211         35431  23677778886  2      36999999      4676    


Q ss_pred             CCcccCCCCCCCCCC---CCCCC--CeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          77 MGCAYGMSGNPCGGV---TCEHG--GICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        77 ~~c~~~~~~~~C~~~---~C~~~--~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                       .|+.+.  +.|...   +|..+  +.| ..    ..|.|.+||.|..|+..
T Consensus       172 -~Ce~~~--~~C~~~~g~~C~~~~~G~C-~~----g~C~C~~G~~G~~C~~~  215 (217)
T 2p28_B          172 -YCECDT--INCERYNGQVCGGPGRGLC-FC----GKCRCHPGFEGSACQHH  215 (217)
T ss_dssp             -TSCEES--SCSCEETTEETTCTTTEEE-ET----TEEEECTTEESTTSCEE
T ss_pred             -CcccCC--ccCCCCCCCCCCCCCCcEE-eC----CeeECCCCCccCCcCCC
Confidence             786223  567643   68766  789 54    28999999999999853

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.17  E-value=7e-07  Score=66.45  Aligned_cols=87  Identities=25%  Similarity=0.566  Sum_probs=63.5

Q ss_pred             ecccCC------CCcccCCCCcccCCCCccCC-CCCCCC--CCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCC
Q psy4097          15 KCGQCP------HGWVGDGTTCRQGTTGCSVQ-NGGCHP--LATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSG   85 (129)
Q Consensus        15 ~C~~C~------~g~~~~~~~C~~~~~~C~~~-~~~C~~--~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~   85 (129)
                      .| .|.      +||.  |..|+.....|... ..+|.+  ++.|..   +     .|.|.+||.|.     .|......
T Consensus       494 ~C-~C~~~~~~~~G~~--G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~---g-----~C~C~~G~~G~-----~Cec~~~~  557 (687)
T 3k6s_B          494 QC-LCHTSDVPGKLIY--GQYCECDTINCERYNGQVCGGPGRGLCFC---G-----KCRCHPGFEGS-----ACQCERTT  557 (687)
T ss_dssp             EE-EECCCCSTTCCEE--STTSCEESSCSCEETTEETSHHHHEEEET---T-----EEEECTTCCST-----TSCSCCSS
T ss_pred             EE-EcCCCCCCCCCcc--ccccccccccccCCCCcCcCCCCCCeEEC---C-----EEEcCCCCcCC-----CCccCCCC
Confidence            79 999      9999  88897322677632 225876  778862   3     69999999998     77511101


Q ss_pred             CCCCCC---CCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          86 NPCGGV---TCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~---~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      +.|...   +|..++.| ..    ..|.|.+||.|..|+.
T Consensus       558 ~~C~~~~g~~Cs~~G~C-~~----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          558 EGCLNPRRVECSGRGRC-RC----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             CTTBCTTCSBTSSSCCB-CS----SCBCCSTTCCTTTTCC
T ss_pred             CCCCCCCCCCCCCCCcC-CC----CEEECCCCCcCCCCCC
Confidence            577643   78888899 54    4799999999999986

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.16  E-value=1.8e-06  Score=65.42  Aligned_cols=59  Identities=20%  Similarity=0.475  Sum_probs=50.1

Q ss_pred             ceeeeCCCceecccCCCCccc-CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           5 VECINTQGYRKCGQCPHGWVG-DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~-~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ..|++++++|.| .|++||.. ++..|+++ ++|.. ..+|.  ..|.++. ++   |.|.|.+||...
T Consensus       324 ~~C~~~~~~y~C-~C~~Gy~l~~g~~C~di-deC~~-~~~C~--~~C~n~~-gs---y~C~C~~Gy~l~  383 (791)
T 3m0c_C          324 HVCNDLKIGYEC-LCPDGFQLVAQRRCEDI-DECQD-PDTCS--QLCVNLE-GG---YKCQCEEGFQLD  383 (791)
T ss_dssp             SEEEECSBSEEE-ECCTTCEEETTTEEECC-CCCSS-SSSCT--TTCCBCS-SC---BCCCCCSSEECC
T ss_pred             ccccCCCCCccc-CCCCCCccCCCCccccC-cccCC-CCCCC--CeeecCC-CC---ceeecCCCCEeC
Confidence            379999999999 99999973 67899998 99984 44675  4799999 88   999999999753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=2e-06  Score=64.31  Aligned_cols=59  Identities=20%  Similarity=0.475  Sum_probs=50.0

Q ss_pred             ceeeeCCCceecccCCCCccc-CCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097           5 VECINTQGYRKCGQCPHGWVG-DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~-~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ..|++++++|.| .|++||.. ++..|+++ ++|.. ..+|.  ..|.++. ++   |.|.|++||.+.
T Consensus       306 ~~C~~~~~~~~C-~C~~G~~~~~~~~C~di-deC~~-~~~C~--~~C~n~~-g~---y~C~C~~G~~~~  365 (699)
T 1n7d_A          306 HVCNDLKIGYEC-LCPDGFQLVAQRRCEDI-DECQD-PDTCS--QLCVNLE-GG---YKCQCEEGFQLD  365 (699)
T ss_dssp             TTCCCCTTCCCC-CCCSSSCCCSSSCCCCC-CCCSS-SSSCT--TTCCBCS-SC---BCCCCCSSCBCC
T ss_pred             CCcccCCCCcEE-eCCCCeEcCCCCcccCc-cccCC-CCccc--cccccCC-CC---eeeeeecccccC
Confidence            478899999999 99999984 57799988 99974 34786  4799998 88   999999999854

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.11  E-value=9.2e-07  Score=64.13  Aligned_cols=92  Identities=23%  Similarity=0.542  Sum_probs=29.1

Q ss_pred             ecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCC---CCCcceeeecCCCCCcCCCCCcCCcccC---------
Q psy4097          15 KCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETS---DTVRSVISCTCPPGMGGSGVGLMGCAYG---------   82 (129)
Q Consensus        15 ~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~---~g~~~~~~c~c~~g~~g~~~~~~~c~~~---------   82 (129)
                      .|..|.+||.  +..|... ..|..-  +|.+.+.|.+..   ...   ..|.|+++|.|.     .|. .         
T Consensus       419 ~C~~C~~Gy~--G~~c~~~-~~C~~C--~C~~~gtc~~~~~Cd~~t---g~C~C~~g~~G~-----~Ce-~C~~G~~g~~  484 (525)
T 4aqs_A          419 RCDVCKEGFY--DLSAEDP-YGCKSC--ACNPLGTIPGGNPCDSET---GYCYCKRLVTGQ-----RCD-QCLPQHWGLS  484 (525)
T ss_dssp             TTCEECTTEE--CCCTTST-TSSEEC--CCCTTTBCCSSCCBCTTT---CCBCBCTTCCST-----TTC-C---------
T ss_pred             cccCCCCCCc--CCCCCCC-CCCccC--CCCCCceecCCCcccCCC---CEEECCCCCcCC-----Ccc-cCCCCccCCC
Confidence            3435666666  4445444 445543  454444443211   012   579999999887     663 1         


Q ss_pred             CCCCCCCCCCCCCCCeeccCC--CCceeeeCCCCCccCCCc
Q psy4097          83 MSGNPCGGVTCEHGGICAPIG--DRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        83 ~~~~~C~~~~C~~~~~C~~~~--~~~~~C~C~~g~~g~~c~  121 (129)
                      ...+.|.+.+|.+++.+ ...  ...+.|.|++||.|..|+
T Consensus       485 ~~~~~C~~C~C~~~gs~-~~~C~~~tG~C~C~~G~~G~~Ce  524 (525)
T 4aqs_A          485 NDLDGCRPCDCDLGGAL-NNSCSEDSGQCSCLPHMIGRQCN  524 (525)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCCcCCCCCCCCcc-CCccCCCCCeeECCCCCcCCCCC
Confidence            00145665567665544 221  234579999999999986

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=98.11  E-value=6.4e-06  Score=46.58  Aligned_cols=64  Identities=25%  Similarity=0.605  Sum_probs=53.1

Q ss_pred             CCCceeee-CCCceecccCCCCcccCCCCcccCCCC-ccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc
Q psy4097           2 TPYVECIN-TQGYRKCGQCPHGWVGDGTTCRQGTTG-CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG   70 (129)
Q Consensus         2 ~~~~~C~~-~~g~~~C~~C~~g~~~~~~~C~~~~~~-C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~   70 (129)
                      ++++.|.. .+|...| .|..||.+++..|..+ ++ |..+...|..++.|..+.+..   ..|.|..++.
T Consensus        19 p~NA~C~r~~~G~e~C-rCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~k---i~C~C~~~~~   84 (105)
T 1n1i_A           19 PENAACYRYLDGTEEW-RCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKE---VECKCTKEGS   84 (105)
T ss_dssp             CTTEEEEECTTSCEEE-EECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSC---EEEECCSTTC
T ss_pred             CCCCCeEECCCCCEeE-EEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCE---EEeECCCCCC
Confidence            46788988 5588999 9999999999999998 88 877777899999999774133   7899998865

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.09  E-value=5.8e-07  Score=46.49  Aligned_cols=42  Identities=29%  Similarity=0.586  Sum_probs=34.9

Q ss_pred             CcccCCCCccCCCCCCCCC--CeeeeCCCCCcceeeecCCCCCc-CCCCCcCCcccCC
Q psy4097          29 TCRQGTTGCSVQNGGCHPL--ATCRETSDTVRSVISCTCPPGMG-GSGVGLMGCAYGM   83 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~--~~C~~~~~g~~~~~~c~c~~g~~-g~~~~~~~c~~~~   83 (129)
                      .++++ ++|.++  ||.++  ++|.+.. ++   |.|.|++||. |.     .|+ ..
T Consensus         7 ~~~~~-d~C~sn--PC~nga~gtC~~~~-g~---y~C~C~~Gy~~G~-----~C~-~~   51 (61)
T 2k2s_B            7 LSETP-AACSSN--PCGPEAAGTCKETN-SG---YICRCNQGYRISL-----DGT-GN   51 (61)
T ss_dssp             CTTSC-CHHHHC--SSCSSSCCEEEECS-SE---EEEECCTTEEEEE-----CSS-SC
T ss_pred             hcCCC-CcCcCC--CCcCCCccccccCC-Cc---eEeECCCCCccCC-----CCC-CC
Confidence            45566 889876  99988  7999988 77   9999999999 88     787 54

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.03  E-value=1.7e-06  Score=43.35  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             CCCCCCCeeccC----CCCceeeeCCCCCccCCCcccc
Q psy4097          91 VTCEHGGICAPI----GDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        91 ~~C~~~~~C~~~----~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      +||.+++.| +.    ..++|.|.|++||.|+.|+...
T Consensus        14 ~pC~NGGtC-~~~~~~~~~~y~C~C~~Gf~G~~Ce~~~   50 (52)
T 3ca7_A           14 WYCLNDAHC-FAVKIADLPVYSCECAIGFMGQRCEYKE   50 (52)
T ss_dssp             HTSCTTCEE-EEEEETTEEEEEEECCTTEESTTSCEEC
T ss_pred             CcCCCCCEE-ecCccCCCCCEEEECCCCCcCCCCcccc
Confidence            367888899 54    4568999999999999998653

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.03  E-value=3e-06  Score=42.91  Aligned_cols=32  Identities=22%  Similarity=0.538  Sum_probs=28.1

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccCCCCcc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQGTTGCS   38 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~~~C~   38 (129)
                      ..|+|++|+|.| .|.+||.  .++.+|.++ ++|.
T Consensus        13 ~~C~nt~Gsy~C-~C~~Gy~L~~d~~~C~di-dec~   46 (55)
T 2jkh_L           13 QFCHEEQNSVVC-SCARGYTLADNGKACIPT-GPYP   46 (55)
T ss_dssp             SEEEEETTEEEE-ECCTTEEECTTSSCEEES-SSSC
T ss_pred             cEeEcCCCCeEE-eCCCCCEECCCCCeeccC-cccc
Confidence            479999999999 9999998  567899998 8774

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.88  E-value=4.7e-06  Score=41.50  Aligned_cols=31  Identities=26%  Similarity=0.662  Sum_probs=27.1

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccCCCCc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQGTTGC   37 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~~~C   37 (129)
                      ..|+|++|+|.| .|.+||.  .++.+|.++ +++
T Consensus        10 ~~C~n~~gs~~C-~C~~Gy~L~~d~~tC~di-de~   42 (51)
T 1kig_L           10 QFCREERSEVRC-SCAHGYVLGDDSKSCVST-ERF   42 (51)
T ss_dssp             SCCCEETTEECC-CCCTTEEECTTSSCEEEC-SSS
T ss_pred             CEeEcCCCCeEE-eCCCCcEECCCCCccccC-Ccc
Confidence            468999999999 9999998  678899988 775

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.86  E-value=4.5e-06  Score=62.19  Aligned_cols=85  Identities=28%  Similarity=0.727  Sum_probs=61.6

Q ss_pred             eecccCCCCcccCCCCcccCCC---------CccCC--CCCCCCCCeeeeCCCCCcceeeecCC------CCCcCCCCCc
Q psy4097          14 RKCGQCPHGWVGDGTTCRQGTT---------GCSVQ--NGGCHPLATCRETSDTVRSVISCTCP------PGMGGSGVGL   76 (129)
Q Consensus        14 ~~C~~C~~g~~~~~~~C~~~~~---------~C~~~--~~~C~~~~~C~~~~~g~~~~~~c~c~------~g~~g~~~~~   76 (129)
                      ..| .|.+||.  |..|+-..+         .|...  ..+|.+++.|.  . +     .|.|.      +||.|.    
T Consensus       446 g~C-~C~~Gy~--G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~-G-----~C~C~~~~~~~~G~~G~----  510 (687)
T 3k6s_B          446 GIC-RCDTGYI--GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV--C-G-----QCLCHTSDVPGKLIYGQ----  510 (687)
T ss_dssp             SSE-EECSSEE--STTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE--T-T-----EEEECCCCSTTCCEEST----
T ss_pred             CEe-EcCCCCc--CCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEe--C-C-----EEEcCCCCCCCCCcccc----
Confidence            468 9999999  888862112         46542  12488888887  3 3     69999      999998    


Q ss_pred             CCcccCCCCCCCCC---CCCCC--CCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          77 MGCAYGMSGNPCGG---VTCEH--GGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        77 ~~c~~~~~~~~C~~---~~C~~--~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                       .|+.+.  ..|..   .+|..  ++.| ..  +  .|.|.+||.|..|+
T Consensus       511 -~Ce~~~--~~C~~~~~~~C~~~~~G~C-~~--g--~C~C~~G~~G~~Ce  552 (687)
T 3k6s_B          511 -YCECDT--INCERYNGQVCGGPGRGLC-FC--G--KCRCHPGFEGSACQ  552 (687)
T ss_dssp             -TSCEES--SCSCEETTEETSHHHHEEE-ET--T--EEEECTTCCSTTSC
T ss_pred             -cccccc--ccccCCCCcCcCCCCCCeE-EC--C--EEEcCCCCcCCCCc
Confidence             886223  67862   35876  7789 53  2  79999999999998

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.84  E-value=1e-05  Score=45.47  Aligned_cols=69  Identities=23%  Similarity=0.585  Sum_probs=52.1

Q ss_pred             CCCceeeeC-CCceecccCCCCcccCCCCcccCC-CCccCCCCCCCCCCeeeeCCCCC-cceeeecCCCCCcC
Q psy4097           2 TPYVECINT-QGYRKCGQCPHGWVGDGTTCRQGT-TGCSVQNGGCHPLATCRETSDTV-RSVISCTCPPGMGG   71 (129)
Q Consensus         2 ~~~~~C~~~-~g~~~C~~C~~g~~~~~~~C~~~~-~~C~~~~~~C~~~~~C~~~~~g~-~~~~~c~c~~g~~g   71 (129)
                      +++|.|.+. +|...| .|..||.+++..|..+. ..|......|..++.|....++. .....|.|..++.-
T Consensus        13 ~~NA~C~r~~~g~e~C-~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C           13 PQNSGCFRHLDEREEC-KCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             CTTEEEECCTTSCCEE-EECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred             CCCCCeEEcCCCCEEE-EecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcc
Confidence            578889875 588999 99999999999998762 46887666899999998764110 01278999998753

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.83  E-value=5.9e-06  Score=42.28  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=27.6

Q ss_pred             CCCCCCeecc--C--CCCceeeeCCCCCccCCCccccc
Q psy4097          92 TCEHGGICAP--I--GDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        92 ~C~~~~~C~~--~--~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                      +|.+++.| +  .  ....|.|.|++||.|.+|+....
T Consensus        15 pC~NGGtC-~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~~   51 (58)
T 3ltf_D           15 YCLNDAHC-FAVKIADLPVYSCECAIGFMGQRCEYKEI   51 (58)
T ss_dssp             TSCSSCEE-EEEEETTEEEEEEEECTTEESSSSCEECC
T ss_pred             cCCCCCEE-eCCccCCCCCEEeECCCCCccCCCcccCC
Confidence            89999999 5  2  45679999999999999997543

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.81  E-value=2.4e-05  Score=38.64  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=28.3

Q ss_pred             CCCCCCCCeecc-CCCCceeeeCCCCCccCCCcccccc
Q psy4097          90 GVTCEHGGICAP-IGDRGYRCQCEPGFTGESELLVPLL  126 (129)
Q Consensus        90 ~~~C~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~~~~~  126 (129)
                      .+.|.++ .|.. ...+.+.|.|++||.|++|+...++
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~~dL~   49 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHADLL   49 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCcccCCCceeec
Confidence            4678887 8942 3557899999999999999976554

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.75  E-value=1.7e-05  Score=39.77  Aligned_cols=32  Identities=28%  Similarity=0.756  Sum_probs=27.5

Q ss_pred             ceeeeCCC-ceecccCCCCcc--cCCCCcccCCCCcc
Q psy4097           5 VECINTQG-YRKCGQCPHGWV--GDGTTCRQGTTGCS   38 (129)
Q Consensus         5 ~~C~~~~g-~~~C~~C~~g~~--~~~~~C~~~~~~C~   38 (129)
                      ..|+|+.+ +|.| .|.+||.  .|+.+|.++ ++|.
T Consensus        11 ~~C~n~~ggs~~C-~C~~Gy~L~~Dg~tC~d~-dec~   45 (53)
T 2bz6_L           11 QYCSDHTGTKRSC-RCHEGYSLLADGVSCTPT-VEYP   45 (53)
T ss_dssp             SEEEEETTTEEEE-ECCTTEEECTTSSCEEEC-SSSC
T ss_pred             CEeEcCCCCCEEe-eCCCCCEECCCCCcccCC-cccc
Confidence            46899998 7999 9999998  578899998 8873

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.68  E-value=5.8e-06  Score=55.24  Aligned_cols=43  Identities=26%  Similarity=0.594  Sum_probs=35.6

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGM   83 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~   83 (129)
                      ++ |||....++|..++.|.|+. ++   |.|.|.+||.++|.   .|. ++
T Consensus         4 Di-DEC~~~~~~C~~~a~C~Nt~-Gs---y~C~C~~Gy~GnG~---~C~-d~   46 (285)
T 1gl4_A            4 AQ-QTCANNRHQCSVHAECRDYA-TG---FCCRCVANYTGNGR---QCV-AE   46 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECS-SC---EEEEECTTEEECSS---SEE-ET
T ss_pred             cc-hhccCCCCCCCCCCEeEcCC-CC---eEEEcCCCCCCCCC---cCC-CC
Confidence            45 89987667899989999999 98   99999999998887   788 66

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.67  E-value=1.2e-05  Score=49.33  Aligned_cols=38  Identities=32%  Similarity=0.705  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      ++|...+|.+++.| .+..++|.|.|++||.|..|+.+.
T Consensus       120 ~~c~~~~C~~~g~C-~~~~~~~~c~C~~g~~G~~Ce~~~  157 (162)
T 1g1s_A          120 ASCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPECEYVR  157 (162)
T ss_dssp             CCCCTTGGGGSEEE-EECSSSEEEEECTTEESTTSCEEC
T ss_pred             CCCcCCCCCCCCEE-ecCCCCceEeCCCCCcCcccccCc
Confidence            57777889888899 899999999999999999999764

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.66  E-value=2.6e-05  Score=40.49  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CCccCCCCCCCCCCeeee-----CCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCC
Q psy4097          35 TGCSVQNGGCHPLATCRE-----TSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCG   89 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~-----~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~   89 (129)
                      ++|..+  +|.++++|.+     .. ++   |.|.|++||.|.     .|+.++  +++.
T Consensus         7 ~~C~~~--pC~ngG~C~~~~~~~~~-~~---y~C~C~~Gf~G~-----~Ce~~i--~~~~   53 (63)
T 1hae_A            7 AEKEKT--FCVNGGECFMVKDLSNP-SR---YLCKCQPGFTGA-----RCTENV--PMKV   53 (63)
T ss_dssp             CHHHHT--TSCTTCEEEEEESSSSS-CC---EEEECCTTEEST-----TSCEEC--CSSC
T ss_pred             CCCCCC--cCCCCcEEecCCccCCC-CC---EEEECCCCCcCC-----ccCcCc--Cccc
Confidence            567765  8999999986     44 44   999999999998     886233  5553

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.64  E-value=6.7e-05  Score=37.51  Aligned_cols=37  Identities=30%  Similarity=0.750  Sum_probs=29.6

Q ss_pred             CCccCC-CCCCCCCCeee--eCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQ-NGGCHPLATCR--ETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~-~~~C~~~~~C~--~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ++|.+. ..+|.++++|.  +.. ++   |.|.|++||.|.     .|+
T Consensus         4 ~~C~~~~~~pC~ngg~C~~~~~~-~~---~~C~C~~G~~G~-----~Ce   43 (53)
T 1egf_A            4 PGCPSSYDGYCLNGGVCMHIESL-DS---YTCNCVIGYSGD-----RCQ   43 (53)
T ss_dssp             CCCCTTSSCSSCSSCEEEEESSS-SC---EEEECCTTCCSS-----SSC
T ss_pred             ccCCCCCCCcCCCCcEEEeeCCC-CC---EEEECCCCCcCC-----cCC
Confidence            667642 24899999998  566 66   999999999988     887

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.62  E-value=0.00015  Score=41.06  Aligned_cols=63  Identities=19%  Similarity=0.390  Sum_probs=49.5

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCC-CCC--CCCCCCCeeccCC-CCceeeeCCCCC
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNP-CGG--VTCEHGGICAPIG-DRGYRCQCEPGF  115 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~-C~~--~~C~~~~~C~~~~-~~~~~C~C~~g~  115 (129)
                      .|..++.|....++.   ..|+|..+|.+.+.   .|. .+  ++ |..  .-|...|.| ... +....|.|..+|
T Consensus        17 ~Cp~NA~C~r~~~G~---e~CrCl~gY~~dg~---~Cv-~~--Np~C~~nNGGCd~nAeC-~~~~~~ki~C~C~~~~   83 (105)
T 1n1i_A           17 NVPENAACYRYLDGT---EEWRCLLGFKEVGG---KCV-PA--SITCEENNGGCAPEAEC-TMDDKKEVECKCTKEG   83 (105)
T ss_dssp             CCCTTEEEEECTTSC---EEEEECTTEEECSS---SEE-EC--CCCTTSGGGGSCTTSEE-EECTTSCEEEECCSTT
T ss_pred             CCCCCCCeEECCCCC---EeEEEECCeeccCC---EEE-EC--CcchhhcCCCcCCCcEe-EECCCCEEEeECCCCC
Confidence            677788999855366   89999999998877   788 66  66 763  459999999 544 478899999886

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.59  E-value=2.3e-05  Score=57.17  Aligned_cols=38  Identities=37%  Similarity=0.902  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCCeeccC-CCCceeeeCC-CCCccCCCcccc
Q psy4097          86 NPCGGVTCEHGGICAPI-GDRGYRCQCE-PGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~-~~~~~~C~C~-~g~~g~~c~~~~  124 (129)
                      ++|.++||.+++.| .+ ..++|.|.|+ .||.|..|+...
T Consensus         3 d~C~~~PC~ngG~C-~~~~~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            3 NPCCYYPCQHQGIC-VRFGLDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CGGGGCCCCTTCEE-EEETTTEEEEECTTSSEETTTTCEEC
T ss_pred             CcCCCCCCCCCCCc-CCCCCCceEeeCCCCCcCCCCCCCCc
Confidence            78888999999999 88 8899999999 999999998654

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.58  E-value=3.2e-05  Score=51.73  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=29.6

Q ss_pred             CCCceeeeCCCceecccCCCCcccCCCCcccCCCC
Q psy4097           2 TPYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTG   36 (129)
Q Consensus         2 ~~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~   36 (129)
                      +.++.|+|+.|+|.| .|.+||.+++..|.++ ++
T Consensus        16 ~~~a~C~Nt~Gsy~C-~C~~Gy~GnG~~C~d~-d~   48 (285)
T 1gl4_A           16 SVHAECRDYATGFCC-RCVANYTGNGRQCVAE-GS   48 (285)
T ss_dssp             CTTEEEEECSSCEEE-EECTTEEECSSSEEET-TC
T ss_pred             CCCCEeEcCCCCeEE-EcCCCCCCCCCcCCCC-CC
Confidence            357899999999999 9999999999999987 65

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.58  E-value=4.8e-05  Score=37.89  Aligned_cols=26  Identities=35%  Similarity=0.915  Sum_probs=21.9

Q ss_pred             CCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          91 VTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        91 ~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      .+|.+  .| ++..++|+|.|++||.+..
T Consensus        20 ~~C~~--~C-~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A           20 PQCQH--LC-HNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CTTSS--EE-EEETTEEEEECSTTCEECT
T ss_pred             CCCCC--Ee-ECCCCCeEEECCCCCeECC
Confidence            56864  89 9999999999999998643

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.53  E-value=4e-05  Score=56.21  Aligned_cols=38  Identities=37%  Similarity=0.823  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCeeccC-CCCceeeeCC-CCCccCCCcccc
Q psy4097          86 NPCGGVTCEHGGICAPI-GDRGYRCQCE-PGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~-~~~~~~C~C~-~g~~g~~c~~~~  124 (129)
                      ++|.++||.+++.| ++ ..++|.|.|+ +||.|..|+...
T Consensus         2 d~C~s~PC~ngG~C-~~~~~~~y~C~C~~~G~~G~~Ce~~~   41 (587)
T 3nt1_A            2 NPCCSNPCQNRGEC-MSTGFDQYKCDCTRTGFYGENCTTPE   41 (587)
T ss_dssp             CTTTTCCCCTTCEE-EEEETTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCCCCCEe-eCCCCCCeEEecCCCCccCCCCCCch
Confidence            78999999999999 64 4588999999 999999998753

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.53  E-value=7.5e-05  Score=52.68  Aligned_cols=94  Identities=21%  Similarity=0.495  Sum_probs=28.1

Q ss_pred             ceeeeCCCceecccCCCCcccCCCCcccCCCCccCCC--CCCCCCCeee-eCCCCCcceeeec-CCCCCcCCCCCcCCcc
Q psy4097           5 VECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQN--GGCHPLATCR-ETSDTVRSVISCT-CPPGMGGSGVGLMGCA   80 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~--~~C~~~~~C~-~~~~g~~~~~~c~-c~~g~~g~~~~~~~c~   80 (129)
                      +.|....+.+.| .|..++.  |..|+.    |...-  .++.+...+. ... ..   ..|. |.-++.+.     .|.
T Consensus       304 s~C~~~~g~~~C-~C~~~tt--G~~CE~----C~pgy~~~P~~~gt~~p~~~g-~~---~~C~pC~Cn~~g~-----~CD  367 (426)
T 3zyj_B          304 TVCVYDNSKLTC-ECEHNTT--GPDCGK----CKKNYQGRPWSPGSYLPIPKG-AA---NACIPSISSIGTN-----VCD  367 (426)
T ss_dssp             SCEEEETTEEEE-CCCTTEE--SSSSCE----ECTTCCSSCCCCCBCCSSSSC-BC---CCCCCCCC-------------
T ss_pred             hhcCCCCCCcee-eCCCCCc--CCCccc----cccccccCcccCCcccccCCC-CC---CcccCCCCCCCcC-----ccc
Confidence            467777777899 9999999  888853    44321  1343322111 111 11   3453 33333333     554


Q ss_pred             cCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccccc
Q psy4097          81 YGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        81 ~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                       ..      ..+|.+++.| ....   +|.|++||.|..|+...+
T Consensus       368 -~~------t~~C~ngg~C-~~~~---~C~C~~G~~G~~Ce~c~C  401 (426)
T 3zyj_B          368 -NE------LLHCQNGGTC-HNNV---RCLCPAAYTGILCEKLRC  401 (426)
T ss_dssp             ---------------------------------------------
T ss_pred             -cC------cccCCCCCCc-CCCC---CCcCCCCCcCCCCcCCCC
Confidence             32      2578888899 5444   899999999999876443

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.51  E-value=5.5e-05  Score=40.01  Aligned_cols=32  Identities=28%  Similarity=0.756  Sum_probs=27.5

Q ss_pred             ceeeeCCC-ceecccCCCCcc--cCCCCcccCCCCcc
Q psy4097           5 VECINTQG-YRKCGQCPHGWV--GDGTTCRQGTTGCS   38 (129)
Q Consensus         5 ~~C~~~~g-~~~C~~C~~g~~--~~~~~C~~~~~~C~   38 (129)
                      ..|+|++| +|.| .|.+||.  .++.+|.++ ++|.
T Consensus        17 h~C~n~~g~s~~C-~C~~Gy~L~~D~~tC~d~-dec~   51 (69)
T 1kli_L           17 QYCSDHTGTKRSC-RCHEGYSLLADGVSCTPT-VEYP   51 (69)
T ss_dssp             SEEEEETTTEEEE-ECCTTEEECTTSSCEEEC-SSSC
T ss_pred             CEeEcCCCCCEEE-eCCCCCeECCCCCcccCc-cccc
Confidence            46899998 8999 9999998  578899998 8764

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.48  E-value=4.7e-05  Score=41.08  Aligned_cols=37  Identities=35%  Similarity=0.691  Sum_probs=28.1

Q ss_pred             CCCC---CCCCCCCCeec-cCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCG---GVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~---~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      ++|.   .+.|.++ .|+ +...+.+.|.|++||.|++|+..
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccccccc
Confidence            5665   5789887 893 34446789999999999999864

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.43  E-value=0.00012  Score=41.14  Aligned_cols=66  Identities=18%  Similarity=0.445  Sum_probs=49.0

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCC-C----CceeeeCCCCC
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIG-D----RGYRCQCEPGF  115 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~-~----~~~~C~C~~g~  115 (129)
                      .|..++.|.+..++.   ..|+|.+||.+.+.   .|. .+....|..  .-|...|.| ... +    +...|.|.+||
T Consensus        11 ~C~~NA~C~r~~~g~---e~C~C~~gy~gdg~---~Cv-~~~~~sC~~nNGGCd~nA~C-~~~~~~~~~~ki~C~C~~g~   82 (99)
T 1ob1_C           11 QCPQNSGCFRHLDER---EECKCLLNYKQEGD---KCV-ENPNPTCNENNGGCDADAKC-TEEDSGSNGKKITCECTKPD   82 (99)
T ss_dssp             CCCTTEEEECCTTSC---CEEEECTTEEEETT---EEE-ECSCCCSTTGGGGCCTTEEE-ECCSCSSSSCCCEEEECSTT
T ss_pred             CCCCCCCeEEcCCCC---EEEEecCCeecCCC---eEe-eCCCCChhhcCCCcCCCcee-EecCCcccCCceEeEeCCCC
Confidence            677788898754365   89999999998876   787 541146864  459889999 544 3    67899999996


Q ss_pred             c
Q psy4097         116 T  116 (129)
Q Consensus       116 ~  116 (129)
                      .
T Consensus        83 ~   83 (99)
T 1ob1_C           83 S   83 (99)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=97.40  E-value=0.00012  Score=36.12  Aligned_cols=35  Identities=26%  Similarity=0.581  Sum_probs=27.7

Q ss_pred             CCCCCCCCeec-cCCCCceeeeCCCCCccCCCccccc
Q psy4097          90 GVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        90 ~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                      .+.|.+ +.|. +...+.+.|.|+.||.|++|+...+
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~~~l   48 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCERVDL   48 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCEECC
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCeecC
Confidence            367887 4783 4667789999999999999997643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=38.76  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeec-CCCCCcCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCT-CPPGMGGS   72 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~-c~~g~~g~   72 (129)
                      ++ +||....++|..++.|+|+. ++   |.|. +..||.+.
T Consensus         2 Di-dEC~~~~~~C~~~~~C~Nt~-Gs---y~C~~~~~g~~~~   38 (71)
T 2kl7_A            2 DV-NECLTIPEACKGEMKCINHY-GG---YLCLPRSAAVIND   38 (71)
T ss_dssp             CS-CCTTCCCCSCTTEEEEEETT-CC---EEEEETTSCCCSC
T ss_pred             cc-ccccCCCCCCCCCCEeECCC-CC---eEecccCCccccc
Confidence            45 89987667898888999999 98   9996 55577654

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.36  E-value=0.00024  Score=34.18  Aligned_cols=29  Identities=24%  Similarity=0.518  Sum_probs=24.6

Q ss_pred             CCCCCCeee--eCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCR--ETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~--~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|.++++|.  +.. ++   |.|.|++||.|.     .|+
T Consensus        10 pC~ngg~C~~~~~~-~~---~~C~C~~G~~G~-----~Ce   40 (45)
T 1a3p_A           10 YCLNGGVXMHIESL-DS---YTCNCVIGYSGD-----RCQ   40 (45)
T ss_dssp             CCSSSCEEEECTTT-SS---EEEECCTTEETT-----TTC
T ss_pred             CCCCCCEEEeecCC-CC---EEEEcCCCCcCC-----cCC
Confidence            899999998  455 55   999999999988     786

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.26  E-value=0.00012  Score=38.88  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             CCCCC--CCCCCCCeeccCCCCceeee
Q psy4097          86 NPCGG--VTCEHGGICAPIGDRGYRCQ  110 (129)
Q Consensus        86 ~~C~~--~~C~~~~~C~~~~~~~~~C~  110 (129)
                      ++|..  ++|..++.| +|+.++|+|.
T Consensus         4 dEC~~~~~~C~~~~~C-~Nt~Gsy~C~   29 (71)
T 2kl7_A            4 NECLTIPEACKGEMKC-INHYGGYLCL   29 (71)
T ss_dssp             CCTTCCCCSCTTEEEE-EETTCCEEEE
T ss_pred             ccccCCCCCCCCCCEe-ECCCCCeEec
Confidence            88873  679877899 9999999998

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.24  E-value=0.0002  Score=34.72  Aligned_cols=38  Identities=34%  Similarity=0.633  Sum_probs=27.0

Q ss_pred             CCccC-CCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSV-QNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~-~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ++|.. ...||.+ ++|.... +. ..|.|.|++||.|.     .|+
T Consensus         4 ~~C~~~~~~pC~n-G~C~~~~-~~-~~~~C~C~~GytG~-----~Ce   42 (46)
T 1k36_A            4 TKCSSDMNGYCLH-GQCIYLV-DM-SQNYCRCEVGYTGV-----RCE   42 (46)
T ss_dssp             ECCCTTCCSSCSS-EEEEEET-TT-TEEEEEECTTCSST-----TSC
T ss_pred             ccCCCCCCCCCCC-CEeeccC-CC-CCEEEECCCCCccC-----CCC
Confidence            56765 1138988 7998643 21 13999999999998     887

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.24  E-value=0.00017  Score=35.85  Aligned_cols=26  Identities=31%  Similarity=0.635  Sum_probs=21.7

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCR   31 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~   31 (129)
                      ..|+|++|+|.| .|.+||.  .++.+|.
T Consensus        24 ~~C~n~~Gsy~C-~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A           24 HLCHNYVGGYFC-SCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             SEEEEETTEEEE-ECSTTCEECTTSSCEE
T ss_pred             CEeECCCCCeEE-ECCCCCeECCCCCccC
Confidence            579999999999 9999998  3455664

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.22  E-value=0.00017  Score=36.30  Aligned_cols=42  Identities=31%  Similarity=0.802  Sum_probs=31.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc--CCCCCcCCcccCCCCCCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG--GSGVGLMGCAYGMSGNPC   88 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~--g~~~~~~~c~~~~~~~~C   88 (129)
                      |+|......|.  ..|+++. ++   |.|.|++||.  .++.   .|. ++  ++|
T Consensus         2 dEC~~~~~~C~--~~C~nt~-Gs---y~C~C~~Gy~L~~d~~---~C~-di--dec   45 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQ-NS---VVCSCARGYTLADNGK---ACI-PT--GPY   45 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEET-TE---EEEECCTTEEECTTSS---CEE-ES--SSS
T ss_pred             ccccCCCCCcC--cEeEcCC-CC---eEEeCCCCCEECCCCC---eec-cC--ccc
Confidence            66765555686  4799999 88   9999999997  3333   687 77  666

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.20  E-value=0.00041  Score=34.16  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=25.8

Q ss_pred             CCCCCCCeec-cCCCCceeeeCCCCCccCCCcc
Q psy4097          91 VTCEHGGICA-PIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        91 ~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      +.|.++ .|. +...+.+.|.|+.||.|++|+.
T Consensus        18 ~yC~nG-~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           18 NFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             GTCSSS-EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             CcCCCC-EEEEecCCCCeeEECCCCcccccccc
Confidence            678876 894 4667788999999999999985

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.10  E-value=0.0004  Score=35.48  Aligned_cols=28  Identities=21%  Similarity=0.599  Sum_probs=24.2

Q ss_pred             ceeeeCC-CceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQ-GYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~-g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|+|++ |+|.| .|.+||.  .|+.+|.++
T Consensus        11 ~~C~n~~~gs~~C-~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E           11 QFCKNSADNKVVC-SCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             SEEEECSTTCEEE-ECCTTEEECTTSSCEEES
T ss_pred             CEeEeCCCCCEEe-eCCCCcEECCCCCcccCC
Confidence            4689999 69999 9999998  577899876

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.89  E-value=0.00023  Score=43.31  Aligned_cols=37  Identities=30%  Similarity=0.766  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      .+|...||.+.+.| .+....|.|.|.+||.|+.|+++
T Consensus       120 ~~~~~~pc~~~g~C-~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          120 AACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             CCCCTTGGGGSEEE-EEETTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCCCCCEe-ecCCCCeeEECCCCccCcccccc
Confidence            56767889888899 88899999999999999999875

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=96.88  E-value=0.0016  Score=40.04  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             CCceeeeCC--CceecccCCCCcccCCCCcc
Q psy4097           3 PYVECINTQ--GYRKCGQCPHGWVGDGTTCR   31 (129)
Q Consensus         3 ~~~~C~~~~--g~~~C~~C~~g~~~~~~~C~   31 (129)
                      .+++|....  +.+.|..|+++|.  +..|+
T Consensus         5 ~~g~C~~~~~~g~~~C~~C~~g~~--G~~Ce   33 (162)
T 1klo_A            5 GGSSCAIVPKTKEVVCTHCPTGTA--GKRCE   33 (162)
T ss_dssp             TTCCEEECSSSCCEEECSCCTTEE--STTSC
T ss_pred             CcCcccccCCCCCEEeCCCCCCCc--CCCCc
Confidence            457787665  5678833888888  66665

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.80  E-value=0.00029  Score=43.12  Aligned_cols=45  Identities=27%  Similarity=0.617  Sum_probs=34.5

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCC
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCG   89 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~   89 (129)
                      .|+.  ++|...  +|.++++|.+.. ++   |.|.|++||.|.     .|+ .+  ++|.
T Consensus       116 ICe~--~~c~~~--~C~~~g~C~~~~-~~---~~c~C~~g~~G~-----~Ce-~~--~~c~  160 (162)
T 1g1s_A          116 LCYT--ASCQDM--SCSKQGECLETI-GN---YTCSCYPGFYGP-----ECE-YV--RDDD  160 (162)
T ss_dssp             EEEE--CCCCTT--GGGGSEEEEECS-SS---EEEEECTTEEST-----TSC-EE--CC--
T ss_pred             EEEe--CCCcCC--CCCCCCEEecCC-CC---ceEeCCCCCcCc-----ccc-cC--cccC
Confidence            4543  456654  888889999988 77   999999999998     898 66  6775

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.62  E-value=0.00065  Score=33.87  Aligned_cols=30  Identities=30%  Similarity=0.635  Sum_probs=24.7

Q ss_pred             CCCCCCCeee--eCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          42 GGCHPLATCR--ETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        42 ~~C~~~~~C~--~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .+|.++++|.  ... ++   |.|.|++||.|.     .|+
T Consensus        12 ~pC~nGG~C~~~~~~-~~---~~C~C~~GytG~-----~Ce   43 (53)
T 1nql_B           12 GYCLHDGVCMYIEAL-DK---YACNCVVGYIGE-----RCQ   43 (53)
T ss_dssp             CEECTTCEEEEETTT-TE---EEEEECTTEEST-----TSC
T ss_pred             CCCCCCeEEeeecCC-CC---EEEecCCCCcCC-----CCC
Confidence            3899999998  344 44   999999999999     886

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.52  E-value=0.0016  Score=34.27  Aligned_cols=44  Identities=30%  Similarity=0.639  Sum_probs=32.2

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCC-CcceeeecCCCCCcC--CCCCcCCcccCCCCCCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDT-VRSVISCTCPPGMGG--SGVGLMGCAYGMSGNPC   88 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g-~~~~~~c~c~~g~~g--~~~~~~~c~~~~~~~~C   88 (129)
                      ++ ++|......|.  ..|.++. + +   |.|.|+.||..  ++.   .|. ++  ++|
T Consensus         4 d~-~eC~~~nggC~--h~C~n~~-g~s---~~C~C~~Gy~L~~D~~---tC~-d~--dec   50 (69)
T 1kli_L            4 DQ-LICVNENGGCE--QYCSDHT-GTK---RSCRCHEGYSLLADGV---SCT-PT--VEY   50 (69)
T ss_dssp             CC-CCTTSGGGGCS--SEEEEET-TTE---EEEECCTTEEECTTSS---CEE-EC--SSS
T ss_pred             cc-ccccCCCCCcC--CEeEcCC-CCC---EEEeCCCCCeECCCCC---ccc-Cc--ccc
Confidence            44 78876555676  4699988 7 7   99999999963  333   687 76  666

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.48  E-value=0.0006  Score=48.79  Aligned_cols=53  Identities=34%  Similarity=0.832  Sum_probs=19.3

Q ss_pred             ceeeeCCCceecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097           5 VECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +.|++.   +.| .|.+||.  +..|+.  +.|..   +|.++++|...       +.|.|.+||.|.     .|+
T Consensus       402 G~C~~~---~~C-~C~~G~~--G~~C~~--~~C~~---~C~~~g~C~~~-------~~C~C~~G~~G~-----~C~  454 (463)
T 2wg3_C          402 GYCTPT---GKC-CCSPGWE--GDFCRT--AKCEP---ACRHGGVCVRP-------NKCLCKKGYLGP-----QCE  454 (463)
T ss_dssp             EEECTT---SCE-EECTTEE--STTSCE--ECC-------------------------------------------
T ss_pred             CccCCC---CeE-CCCCCcC--CCcCCc--CcCCC---CCCCCCEECCC-------CEEECCCCcccC-----CCC
Confidence            567543   489 9999999  889963  67875   89998899742       589999999998     887

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.38  E-value=0.005  Score=36.08  Aligned_cols=59  Identities=25%  Similarity=0.477  Sum_probs=37.9

Q ss_pred             CCCCCCeeeeCC--CCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCC
Q psy4097          43 GCHPLATCRETS--DTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESE  120 (129)
Q Consensus        43 ~C~~~~~C~~~~--~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c  120 (129)
                      ||.++++|.+..  .+.   +.|.|+++|.|.     .|+ ... +    .+|..      .....|++.+..++.|..|
T Consensus         2 pC~nggtC~~~~~~~~~---~~C~Cp~g~~G~-----~Ce-~~~-~----~~C~~------g~G~~YrG~~~~t~sG~~C   61 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNI---HWCNCPKKFGGQ-----HCE-IDK-S----KTCYE------GNGHFYRGKASTDTMGRPC   61 (122)
T ss_dssp             CCCSSCEEEECTTTTTC---EEEECCTTEEST-----TSC-EES-S----CCSBC------SSCTTCCSCCCBBTTSCBB
T ss_pred             CCCCcCCcCCCcccCCC---CCccCCCCCCCc-----ccc-ccC-c----CCCcc------cccccceeeccccccCCcc
Confidence            688889998752  031   489999999998     887 321 1    12221      1234577777777777776


Q ss_pred             c
Q psy4097         121 L  121 (129)
Q Consensus       121 ~  121 (129)
                      +
T Consensus        62 q   62 (122)
T 2fd6_A           62 L   62 (122)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=96.37  E-value=0.0022  Score=44.99  Aligned_cols=36  Identities=25%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCC-CCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~-g~~g~~c~~  122 (129)
                      +.|..+||.+++.| +.....|.|.|+. +|.|..|+.
T Consensus       186 ~~C~~~pC~n~g~C-~~~~~~~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          186 TTCQEDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             SCCCTTSSSTTCEE-EECSSSEEEECTTTSEESTTSCE
T ss_pred             CCcccccCCCCCEe-cCCCCCceEeccCCcccCCCCCC
Confidence            67888999999999 8888999999996 999999974

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.28  E-value=0.0021  Score=31.77  Aligned_cols=41  Identities=29%  Similarity=0.583  Sum_probs=30.8

Q ss_pred             eecccCCCCcccCCCCcccCCCCccCCCCCCCCCCeeeeC----CCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          14 RKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRET----SDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        14 ~~C~~C~~g~~~~~~~C~~~~~~C~~~~~~C~~~~~C~~~----~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ..| .|++||.                ..+|.++++|...    . ++   |.|.|++||.|.     .|+
T Consensus         3 ~~C-~C~~g~~----------------~~pC~NGGtC~~~~~~~~-~~---y~C~C~~Gf~G~-----~Ce   47 (52)
T 3ca7_A            3 PTY-KCPETFD----------------AWYCLNDAHCFAVKIADL-PV---YSCECAIGFMGQ-----RCE   47 (52)
T ss_dssp             CCB-CCCHHHH----------------HHTSCTTCEEEEEEETTE-EE---EEEECCTTEEST-----TSC
T ss_pred             eee-ECCCCCc----------------CCcCCCCCEEecCccCCC-CC---EEEECCCCCcCC-----CCc
Confidence            357 7777775                1278888999862    3 33   899999999998     786

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.25  E-value=0.0046  Score=44.89  Aligned_cols=49  Identities=20%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             cCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccC----CCCceeeeCCCCCccCCCc
Q psy4097          64 TCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPI----GDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        64 ~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~----~~~~~~C~C~~g~~g~~c~  121 (129)
                      .|.+||.+.     .|. ..  +.|...+|...+.| .+    ....+.|.|++||.|..|+
T Consensus       422 ~C~~Gy~G~-----~c~-~~--~~C~~C~C~~~gtc-~~~~~Cd~~tg~C~C~~g~~G~~Ce  474 (525)
T 4aqs_A          422 VCKEGFYDL-----SAE-DP--YGCKSCACNPLGTI-PGGNPCDSETGYCYCKRLVTGQRCD  474 (525)
T ss_dssp             EECTTEECC-----CTT-ST--TSSEECCCCTTTBC-CSSCCBCTTTCCBCBCTTCCSTTTC
T ss_pred             CCCCCCcCC-----CCC-CC--CCCccCCCCCCcee-cCCCcccCCCCEEECCCCCcCCCcc
Confidence            466666655     444 33  45554455544444 22    1245689999999999986

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.20  E-value=0.0034  Score=30.88  Aligned_cols=36  Identities=31%  Similarity=0.792  Sum_probs=26.0

Q ss_pred             CCCCCCCCeeeeCCCCCcceeeecCCCCCc--CCCCCcCCcccCCCCCCC
Q psy4097          41 NGGCHPLATCRETSDTVRSVISCTCPPGMG--GSGVGLMGCAYGMSGNPC   88 (129)
Q Consensus        41 ~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~--g~~~~~~~c~~~~~~~~C   88 (129)
                      ...|.  ..|+++. ++   |.|.|++||.  .++.   .|. ++  +++
T Consensus         5 ng~C~--~~C~n~~-gs---~~C~C~~Gy~L~~d~~---tC~-di--de~   42 (51)
T 1kig_L            5 NGGCD--QFCREER-SE---VRCSCAHGYVLGDDSK---SCV-ST--ERF   42 (51)
T ss_dssp             TTSSS--SCCCEET-TE---ECCCCCTTEEECTTSS---CEE-EC--SSS
T ss_pred             CCCcC--CEeEcCC-CC---eEEeCCCCcEECCCCC---ccc-cC--Ccc
Confidence            34565  3588988 88   9999999997  3333   687 76  665

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.80  E-value=0.0064  Score=44.53  Aligned_cols=35  Identities=23%  Similarity=0.664  Sum_probs=31.0

Q ss_pred             CCccCCCCCCCCCCeeee-CCCCCcceeeecCC-CCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRE-TSDTVRSVISCTCP-PGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~-~~~g~~~~~~c~c~-~g~~g~~~~~~~c~   80 (129)
                      ++|.++  ||.++++|.+ .. +.   |.|.|. .||.|.     .|+
T Consensus         3 d~C~~~--PC~ngG~C~~~~~-~~---y~C~C~~~G~~G~-----~Ce   39 (553)
T 1q4g_A            3 NPCCYY--PCQHQGICVRFGL-DR---YQCDCTRTGYSGP-----NCT   39 (553)
T ss_dssp             CGGGGC--CCCTTCEEEEETT-TE---EEEECTTSSEETT-----TTC
T ss_pred             CcCCCC--CCCCCCCcCCCCC-Cc---eEeeCCCCCcCCC-----CCC
Confidence            788877  9999999998 66 65   999999 999998     886

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=95.60  E-value=0.012  Score=36.95  Aligned_cols=33  Identities=30%  Similarity=0.679  Sum_probs=25.9

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      ..|. .+|.+++.| +.   .-.|.|+.||.|..|+..
T Consensus       149 ~~C~-~~C~ngG~C-v~---P~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          149 AECP-GGCRNGGFC-NE---RRICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCCT-TCCCTTCEE-CT---TSCEECCTTCBTTTTCBC
T ss_pred             CccC-CCCCCCCEe-CC---CCcccCcCCCCCCCCcCC
Confidence            3563 579999999 43   348999999999999864

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.52  E-value=0.0094  Score=36.00  Aligned_cols=32  Identities=25%  Similarity=0.555  Sum_probs=25.9

Q ss_pred             CCCCCCeeccCC--CCce-eeeCCCCCccCCCcccc
Q psy4097          92 TCEHGGICAPIG--DRGY-RCQCEPGFTGESELLVP  124 (129)
Q Consensus        92 ~C~~~~~C~~~~--~~~~-~C~C~~g~~g~~c~~~~  124 (129)
                      +|.+++.| +..  ...+ +|.|++||.|+.|++..
T Consensus        14 pC~NGGtC-~~~~~~s~~~~C~Cp~g~~G~~Cei~~   48 (145)
T 2i9a_A           14 DCLNGGTC-VSNKYFSNIHWCNCPKKFGGQHCEIDK   48 (145)
T ss_dssp             CCCTTCEE-EECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCCCCc-CCCccccCCccccCCCCCCCCceeccc
Confidence            89999999 554  3455 89999999999998653

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=95.44  E-value=0.029  Score=30.97  Aligned_cols=65  Identities=25%  Similarity=0.541  Sum_probs=49.3

Q ss_pred             CCCceeeeCC-CceecccCCCCcccCCCCcccCC-CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCc
Q psy4097           2 TPYVECINTQ-GYRKCGQCPHGWVGDGTTCRQGT-TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMG   70 (129)
Q Consensus         2 ~~~~~C~~~~-g~~~C~~C~~g~~~~~~~C~~~~-~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~   70 (129)
                      ..+|.|.... +.-.| +|..+|..++.+|.... ..|..+.+.|...+.|.... ..  ...|.|...+.
T Consensus        13 p~NA~Cyr~~dg~Eec-RCllnykk~~~kCV~~~~~~C~~NNGGCd~nA~C~~~~-~~--kIvC~C~~~~~   79 (95)
T 1b9w_A           13 PENAACYRYLDGTEEW-RCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMND-KN--EIVCKCTKEGS   79 (95)
T ss_dssp             CTTEEEEECTTSCEEE-EECTTEEEETTEEEECTTCCTTTGGGGSCTTSEEEECT-TS--CEEEECCSTTE
T ss_pred             CCCcCeEEEcCCCEEE-EEECCeEecCCEEEcCCCCCccccCCCcCCCcceeecC-CC--cEEEECCCCCC
Confidence            4578888865 67889 99999998788897651 26887777899999998765 21  27888887654

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=95.36  E-value=0.006  Score=30.89  Aligned_cols=29  Identities=34%  Similarity=0.651  Sum_probs=23.4

Q ss_pred             CCCCCCeeee----CCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCRE----TSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~~----~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|.++++|..    .. ..   +.|.|++||.|.     .|+
T Consensus        15 pC~NGGtC~~~~~~~~-~~---~~C~C~~Gf~G~-----~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADL-PV---YSCECAIGFMGQ-----RCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTE-EE---EEEEECTTEESS-----SSC
T ss_pred             cCCCCCEEeCCccCCC-CC---EEeECCCCCccC-----CCc
Confidence            7889999983    22 33   899999999998     887

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.31  E-value=0.012  Score=43.40  Aligned_cols=35  Identities=23%  Similarity=0.660  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCCCeeee-CCCCCcceeeecCC-CCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRE-TSDTVRSVISCTCP-PGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~-~~~g~~~~~~c~c~-~g~~g~~~~~~~c~   80 (129)
                      ++|.++  ||.++++|.. .. +.   |.|.|+ +||.|.     .|+
T Consensus         2 d~C~s~--PC~ngG~C~~~~~-~~---y~C~C~~~G~~G~-----~Ce   38 (587)
T 3nt1_A            2 NPCCSN--PCQNRGECMSTGF-DQ---YKCDCTRTGFYGE-----NCT   38 (587)
T ss_dssp             CTTTTC--CCCTTCEEEEEET-TE---EEEECTTSSEETT-----TTC
T ss_pred             CCCCCC--CCCCCCEeeCCCC-CC---eEEecCCCCccCC-----CCC
Confidence            788876  9999999995 44 44   999999 999988     776

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=95.15  E-value=0.013  Score=46.80  Aligned_cols=37  Identities=24%  Similarity=0.614  Sum_probs=32.7

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCC-CCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCE-PGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~~  123 (129)
                      +.|..+||.+++.| .....+|.|.|+ ++|.|..|+..
T Consensus      1018 ~~C~~~pC~ngG~C-~~~~~~~~C~C~~~g~~G~~C~~~ 1055 (1245)
T 3qcw_A         1018 TTCQEDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLCNDP 1055 (1245)
T ss_dssp             CCCCTTSSSSSCEE-EEETTEEEEECTTSSCBSTTSCBC
T ss_pred             CceECCcCCCCCEe-CCCCCCCEEECCCCCCCCCCccCC
Confidence            67888999999999 777889999999 69999999754

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.07  E-value=0.011  Score=29.20  Aligned_cols=35  Identities=31%  Similarity=0.774  Sum_probs=25.5

Q ss_pred             CCCCCCCeeeeCCCC-CcceeeecCCCCCc--CCCCCcCCcccCCCCCCC
Q psy4097          42 GGCHPLATCRETSDT-VRSVISCTCPPGMG--GSGVGLMGCAYGMSGNPC   88 (129)
Q Consensus        42 ~~C~~~~~C~~~~~g-~~~~~~c~c~~g~~--g~~~~~~~c~~~~~~~~C   88 (129)
                      ..|.  ..|.++. + +   |.|.|++||.  .++.   .|. ++  ++|
T Consensus         7 ggC~--~~C~n~~-ggs---~~C~C~~Gy~L~~Dg~---tC~-d~--dec   44 (53)
T 2bz6_L            7 GGCE--QYCSDHT-GTK---RSCRCHEGYSLLADGV---SCT-PT--VEY   44 (53)
T ss_dssp             GGCS--SEEEEET-TTE---EEEECCTTEEECTTSS---CEE-EC--SSS
T ss_pred             CCcC--CEeEcCC-CCC---EEeeCCCCCEECCCCC---ccc-CC--ccc
Confidence            3564  3599988 7 7   9999999997  3333   687 77  776

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.81  E-value=0.012  Score=36.24  Aligned_cols=30  Identities=27%  Similarity=0.848  Sum_probs=24.5

Q ss_pred             CCCCCCCCCCC-----CCCCCeeccCCCCceeeeCCCCCc
Q psy4097          82 GMSGNPCGGVT-----CEHGGICAPIGDRGYRCQCEPGFT  116 (129)
Q Consensus        82 ~~~~~~C~~~~-----C~~~~~C~~~~~~~~~C~C~~g~~  116 (129)
                      ++  ++|...+     |.+  .| .+..++|.|.|++||.
T Consensus       123 di--~eC~~~~~~~~~C~~--~C-~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          123 DI--DECQVAPGEAPTCDH--HC-HNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             EC--CTTCCCTTSCCSSSS--EE-EEETTEEEEECCTTEE
T ss_pred             cc--CcccCCCCCCCccCC--cc-ccCCCCEEEeCCCCcE
Confidence            55  7887432     876  69 8999999999999998

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=94.76  E-value=0.039  Score=33.81  Aligned_cols=69  Identities=22%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             CCCCCCeeeeCCCCCcceeee-cCCCCCcCCCCCcCCcccCC--------C-----CCCCCCCCCCCC------CeeccC
Q psy4097          43 GCHPLATCRETSDTVRSVISC-TCPPGMGGSGVGLMGCAYGM--------S-----GNPCGGVTCEHG------GICAPI  102 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c-~c~~g~~g~~~~~~~c~~~~--------~-----~~~C~~~~C~~~------~~C~~~  102 (129)
                      +|.++++|.... ++ ..+.| .|+++|.|.     .|+ .-        .     ...|..-.|..+      +.| ..
T Consensus         2 ~C~~~g~C~~~~-~~-g~~~C~~C~~g~~G~-----~Ce-~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C-~~   72 (162)
T 1klo_A            2 PCPGGSSCAIVP-KT-KEVVCTHCPTGTAGK-----RCE-LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNC-NR   72 (162)
T ss_dssp             CSCTTCCEEECS-SS-CCEEECSCCTTEEST-----TSC-EECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCB-CT
T ss_pred             cCcCcCcccccC-CC-CCEEeCCCCCCCcCC-----CCc-CCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcc-cC
Confidence            466677787543 21 12678 688888877     554 10        0     011221123332      346 32


Q ss_pred             CCCceeee-CCCCCccCCCcc
Q psy4097         103 GDRGYRCQ-CEPGFTGESELL  122 (129)
Q Consensus       103 ~~~~~~C~-C~~g~~g~~c~~  122 (129)
                        ....|. |.++|+|..|+.
T Consensus        73 --~tG~C~~C~~g~~G~~Ce~   91 (162)
T 1klo_A           73 --LTGECLKCIYNTAGFYCDR   91 (162)
T ss_dssp             --TTCCBCCBCTTEETTTTCE
T ss_pred             --CCCcccCCCCCCcCCCcCc
Confidence              234784 999999988864

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=94.42  E-value=0.021  Score=45.55  Aligned_cols=36  Identities=33%  Similarity=0.799  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCC-CCCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCE-PGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~-~g~~g~~c~~  122 (129)
                      +.|.++||.+++.| ......|.|.|+ .||.|..|+.
T Consensus       620 ~~C~~~pC~ngg~C-~~~~~~~~C~C~~~g~~G~~C~~  656 (1245)
T 3qcw_A          620 KPCLSNPCKNNGMC-RDGWNRYVCDCSGTGYLGRSCER  656 (1245)
T ss_dssp             CGGGSCCCCTTCEE-EECSSSEEEECTTTTEESTTSCE
T ss_pred             CCCCccCCCCCCEE-eCCCCCeEEECCCCCcccccCcc
Confidence            67888999999999 888889999999 7999999975

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=94.35  E-value=0.016  Score=37.32  Aligned_cols=62  Identities=23%  Similarity=0.468  Sum_probs=42.4

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCC-------CCCCC----CCCCCCCCeeccCCCCceeeeC
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMS-------GNPCG----GVTCEHGGICAPIGDRGYRCQC  111 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~-------~~~C~----~~~C~~~~~C~~~~~~~~~C~C  111 (129)
                      .|..+++|..        ..|.|.+||.|.     .|+....       ...|.    ..+|..++.| +.    ..|.|
T Consensus        97 ~Csg~G~C~~--------g~C~C~~G~~G~-----~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C-~~----g~C~C  158 (217)
T 2p28_B           97 LCHGKGFLEC--------GICRCDTGYIGK-----NCECQTQGRSSQELEGSCRKDNNSIICSGLGDC-VC----GQCLC  158 (217)
T ss_dssp             TTTTSEEEET--------TEEEECTTEEST-----TSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEE-ET----TEEEE
T ss_pred             ccCCCceEEC--------CEEECCCCccCC-----cccccCcccccccCCCcCCCCCCCCCCCCCCEE-eC----CceEC
Confidence            5777777752        269999999988     6652110       01243    2568777889 53    37999


Q ss_pred             CCC------CccCCCcc
Q psy4097         112 EPG------FTGESELL  122 (129)
Q Consensus       112 ~~g------~~g~~c~~  122 (129)
                      .+|      |.|..|+.
T Consensus       159 ~~gw~~~~~~~G~~Ce~  175 (217)
T 2p28_B          159 HTSDVPGKLIYGQYCEC  175 (217)
T ss_dssp             CCCCSTTCCEESTTSCE
T ss_pred             CCCCCCcccEECCCccc
Confidence            999      69999984

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=93.65  E-value=0.033  Score=28.15  Aligned_cols=23  Identities=26%  Similarity=0.756  Sum_probs=18.7

Q ss_pred             CCCCCCCeeccCCC-CceeeeCCCCCc
Q psy4097          91 VTCEHGGICAPIGD-RGYRCQCEPGFT  116 (129)
Q Consensus        91 ~~C~~~~~C~~~~~-~~~~C~C~~g~~  116 (129)
                      ..|.+  .| ++.. ++|.|.|++||.
T Consensus         7 ggC~~--~C-~n~~~gs~~C~C~~Gy~   30 (59)
T 2wph_E            7 GRCEQ--FC-KNSADNKVVCSCTEGYR   30 (59)
T ss_dssp             GGCSS--EE-EECSTTCEEEECCTTEE
T ss_pred             CCcCC--Ee-EeCCCCCEEeeCCCCcE
Confidence            34655  69 8888 699999999996

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=92.90  E-value=0.2  Score=29.13  Aligned_cols=28  Identities=21%  Similarity=0.593  Sum_probs=22.5

Q ss_pred             CCceeeeCC--Cce-ecccCCCCcccCCCCcccC
Q psy4097           3 PYVECINTQ--GYR-KCGQCPHGWVGDGTTCRQG   33 (129)
Q Consensus         3 ~~~~C~~~~--g~~-~C~~C~~g~~~~~~~C~~~   33 (129)
                      .+++|++..  .++ .| .|++||.  +..|+..
T Consensus         5 nggtC~~~~~~~~~~~C-~Cp~g~~--G~~Ce~~   35 (122)
T 2fd6_A            5 NGGTCVSNKYFSNIHWC-NCPKKFG--GQHCEID   35 (122)
T ss_dssp             SSCEEEECTTTTTCEEE-ECCTTEE--STTSCEE
T ss_pred             CcCCcCCCcccCCCCCc-cCCCCCC--Ccccccc
Confidence            568898874  445 99 9999999  8999754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.69  E-value=0.044  Score=37.49  Aligned_cols=28  Identities=29%  Similarity=0.851  Sum_probs=16.9

Q ss_pred             CCCC-CCCCCCCCeeccCCCCceeeeCCCCCc
Q psy4097          86 NPCG-GVTCEHGGICAPIGDRGYRCQCEPGFT  116 (129)
Q Consensus        86 ~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~  116 (129)
                      ++|. ...|.+  .| .+..++|+|.|++||.
T Consensus         2 ~ec~~~~~C~~--~C-~n~~g~~~C~C~~g~~   30 (349)
T 3v64_C            2 NECAEEGYCSQ--GC-TNSEGAFQCWCEAGYE   30 (349)
T ss_dssp             -------CCSS--EE-CCC---CCEECCTTEE
T ss_pred             cccCCCCCCcC--ee-ecCCCCeEEECCCCcc
Confidence            6775 356877  79 9999999999999996

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=92.28  E-value=0.025  Score=40.05  Aligned_cols=47  Identities=28%  Similarity=0.711  Sum_probs=0.0

Q ss_pred             ccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCC
Q psy4097          37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDR  105 (129)
Q Consensus        37 C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~  105 (129)
                      |.....+|.++++|...       ..|.|++||.|.     .|+ ..        .|.+++.| ....|
T Consensus       366 CD~~t~~C~ngg~C~~~-------~~C~C~~G~~G~-----~Ce-~c--------~C~~~g~C-~~~~G  412 (426)
T 3zyj_B          366 CDNELLHCQNGGTCHNN-------VRCLCPAAYTGI-----LCE-KL--------RCEEAGSC-GSDSG  412 (426)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccCcccCCCCCCcCCC-------CCCcCCCCCcCC-----CCc-CC--------CCCCCCcc-cCCCC
Confidence            33334467777778642       379999999998     776 32        45555567 44333

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=91.99  E-value=0.26  Score=27.21  Aligned_cols=65  Identities=17%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcccCCCCCCCCC--CCCCCCCeeccCCC-CceeeeCCCCC
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGG--VTCEHGGICAPIGD-RGYRCQCEPGF  115 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~~~~~~~~C~~--~~C~~~~~C~~~~~-~~~~C~C~~g~  115 (129)
                      .|..++.|....++.   -.|+|..+|.-.+.   .|. ......|..  ..|...+.| .... ....|.|...+
T Consensus        11 kcp~NA~Cyr~~dg~---EecRCllnykk~~~---kCV-~~~~~~C~~NNGGCd~nA~C-~~~~~~kIvC~C~~~~   78 (95)
T 1b9w_A           11 NVPENAACYRYLDGT---EEWRCLLYFKEDAG---KCV-PAPNMTCKDKNGGCAPEAEC-KMNDKNEIVCKCTKEG   78 (95)
T ss_dssp             CCCTTEEEEECTTSC---EEEEECTTEEEETT---EEE-ECTTCCTTTGGGGSCTTSEE-EECTTSCEEEECCSTT
T ss_pred             CCCCCcCeEEEcCCC---EEEEEECCeEecCC---EEE-cCCCCCccccCCCcCCCcce-eecCCCcEEEECCCCC
Confidence            677788998865354   78999999975543   676 431136763  458888899 5444 77889998764

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=91.88  E-value=0.19  Score=35.21  Aligned_cols=41  Identities=24%  Similarity=0.621  Sum_probs=31.4

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCC-CCcCCCCCcCCcc
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPP-GMGGSGVGLMGCA   80 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~-g~~g~~~~~~~c~   80 (129)
                      .|....+.|...  +|.++++|.... ..   |.|.|+. +|.|.     .|+
T Consensus       180 gC~~~~~~C~~~--pC~n~g~C~~~~-~~---~~C~C~~~~~~G~-----~C~  221 (410)
T 3asi_A          180 GCEGPSTTCQED--SCSNQGVCLQQW-DG---FSCDCSMTSFSGP-----LCN  221 (410)
T ss_dssp             SCCCCSSCCCTT--SSSTTCEEEECS-SS---EEEECTTTSEEST-----TSC
T ss_pred             CCCCCCCCcccc--cCCCCCEecCCC-CC---ceEeccCCcccCC-----CCC
Confidence            354322678765  999999999877 66   9999996 89887     776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.83  E-value=0.069  Score=36.52  Aligned_cols=28  Identities=29%  Similarity=0.704  Sum_probs=20.8

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|+|++|+|.| .|.+||.  .++.+|...
T Consensus        12 ~~C~n~~g~~~C-~C~~g~~l~~d~~~C~~~   41 (349)
T 3v64_C           12 QGCTNSEGAFQC-WCEAGYELRPDRRSCKAL   41 (349)
T ss_dssp             SEECCC---CCE-ECCTTEEECTTSSCEEES
T ss_pred             CeeecCCCCeEE-ECCCCccCCCCCCccccc
Confidence            469999999999 9999998  566788764

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.65  E-value=0.11  Score=31.24  Aligned_cols=29  Identities=38%  Similarity=0.839  Sum_probs=23.4

Q ss_pred             CCCCC---CCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          86 NPCGG---VTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        86 ~~C~~---~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      ++|..   .+|.+  .| .+..++|.|.|.+||..
T Consensus       118 ~eC~~~~~~~C~~--~C-~n~~g~~~C~C~~Gy~l  149 (159)
T 1nzi_A          118 NECTDFVDVPCSH--FC-NNFIGGYFCSCPPEYFL  149 (159)
T ss_dssp             CTTTC-CCCCSSS--EE-EEETTEEEEECCTTCEE
T ss_pred             cccCCCCCCCCCC--cc-cCcCCCEEEecCCCcEE
Confidence            78863   35754  79 88899999999999983

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=91.51  E-value=0.29  Score=29.42  Aligned_cols=30  Identities=33%  Similarity=0.771  Sum_probs=23.1

Q ss_pred             CCCCCCeeeeCCC-CCccee-eecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCRETSD-TVRSVI-SCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~~~~~-g~~~~~-~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|.++++|....- ..   + .|.|+++|.|.     .|+
T Consensus        14 pC~NGGtC~~~~~~s~---~~~C~Cp~g~~G~-----~Ce   45 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSN---IHWCNCPKKFGGQ-----HCE   45 (145)
T ss_dssp             CCCTTCEEEECSSSTT---CEEEECCTTEEST-----TSC
T ss_pred             CCCCCCCcCCCccccC---CccccCCCCCCCC-----cee
Confidence            7999999976410 11   4 79999999998     887

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=91.18  E-value=0.056  Score=32.48  Aligned_cols=35  Identities=31%  Similarity=0.827  Sum_probs=28.4

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .+|...  +|.+++.|.+.. ..   |.|.|.++|.|.     .|+
T Consensus       120 ~~~~~~--pc~~~g~C~~~~-~~---~~c~C~~g~~g~-----~Ce  154 (157)
T 1g1t_A          120 AACTNT--SCSGHGECVETI-NN---YTCKCDPGFSGL-----KCE  154 (157)
T ss_dssp             CCCCTT--GGGGSEEEEEET-TE---EEEEECTTEEST-----TSC
T ss_pred             CCCCCC--CCCCCCEeecCC-CC---eeEECCCCccCc-----ccc
Confidence            455544  788888999877 66   999999999998     886

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.02  E-value=0.15  Score=31.15  Aligned_cols=36  Identities=22%  Similarity=0.513  Sum_probs=27.0

Q ss_pred             CcccCCCCccCCCCC---CCCCCeeeeCCCCCcceeeecCCCCCcC
Q psy4097          29 TCRQGTTGCSVQNGG---CHPLATCRETSDTVRSVISCTCPPGMGG   71 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~---C~~~~~C~~~~~g~~~~~~c~c~~g~~g   71 (129)
                      .+.++ ++|......   |..  .|.++. ++   |.|.|.+||..
T Consensus       120 ~~~di-~eC~~~~~~~~~C~~--~C~n~~-g~---~~C~C~~Gy~l  158 (170)
T 1szb_A          120 AAEDI-DECQVAPGEAPTCDH--HCHNHL-GG---FYCSCRAGYVL  158 (170)
T ss_dssp             EEEEC-CTTCCCTTSCCSSSS--EEEEET-TE---EEEECCTTEEE
T ss_pred             ecccc-CcccCCCCCCCccCC--ccccCC-CC---EEEeCCCCcEE
Confidence            35566 888865332   764  699998 87   99999999973

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=90.58  E-value=0.13  Score=37.48  Aligned_cols=29  Identities=24%  Similarity=0.605  Sum_probs=24.5

Q ss_pred             CCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          91 VTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        91 ~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      ++|+.++.|+....+.|.|.|+.||.|..
T Consensus        27 ~~c~~~a~C~~~~~~~~~c~C~~G~ag~G   55 (551)
T 3fby_A           27 SECHEHADCVLERDGSRSCVCAVGWAGNG   55 (551)
T ss_dssp             CCCCTTEEEEECTTSCEEEEECTTEESSS
T ss_pred             CCCCCCCeeEeCCCCCEecCCCCCCCCCC
Confidence            68999999955567788999999998876

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=90.13  E-value=0.13  Score=34.15  Aligned_cols=31  Identities=26%  Similarity=0.636  Sum_probs=25.0

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccCCCCc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQGTTGC   37 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~~~C   37 (129)
                      ..|.++.++|.| .|..||.  .++.+|... ++|
T Consensus        15 ~~C~~~~~~~~C-~C~~G~~l~~d~~sC~p~-~~c   47 (283)
T 3f1s_B           15 HFCLPGQESYTC-SCAQGYRLGEDHKQCVPH-DQC   47 (283)
T ss_dssp             SBCCCCTTSCCC-BCCTTEEECTTSSCEEEC-STT
T ss_pred             CEeeCCCCCeEe-cCCCCcccCCCCCccccc-ccc
Confidence            358899999999 9999998  456788876 554

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=87.82  E-value=0.39  Score=30.14  Aligned_cols=26  Identities=38%  Similarity=0.979  Sum_probs=22.0

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|.+++.|.. +      ..|.|++||.|.     .|+
T Consensus       154 ~C~ngG~Cv~-P------~~C~C~~Gw~G~-----~C~  179 (188)
T 2ygo_A          154 GCRNGGFCNE-R------RICECPDGFHGP-----HCE  179 (188)
T ss_dssp             CCCTTCEECT-T------SCEECCTTCBTT-----TTC
T ss_pred             CCCCCCEeCC-C------CcccCcCCCCCC-----CCc
Confidence            7899999974 3      479999999999     887

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=85.36  E-value=0.5  Score=31.27  Aligned_cols=29  Identities=34%  Similarity=0.926  Sum_probs=23.3

Q ss_pred             CCCCC---CCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          86 NPCGG---VTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        86 ~~C~~---~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      |+|..   ..|.+  .| .+..++|+|.|..||..
T Consensus         3 ~eC~~~~~~~C~~--~C-~~~~~~~~C~C~~G~~l   34 (283)
T 3f1s_B            3 NECHPERTDGCQH--FC-LPGQESYTCSCAQGYRL   34 (283)
T ss_dssp             CCCCSSCSSSCSS--BC-CCCTTSCCCBCCTTEEE
T ss_pred             CccCCCCCCCCCC--Ee-eCCCCCeEecCCCCccc
Confidence            67763   46876  69 89999999999999963

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=85.09  E-value=0.75  Score=33.62  Aligned_cols=30  Identities=37%  Similarity=0.785  Sum_probs=25.3

Q ss_pred             CCCCCCCeeeeCCCCCcceeeecCCCCCcCCCC
Q psy4097          42 GGCHPLATCRETSDTVRSVISCTCPPGMGGSGV   74 (129)
Q Consensus        42 ~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~   74 (129)
                      ++|+.++.|+....++   |.|.|+.||.|.|.
T Consensus        27 ~~c~~~a~C~~~~~~~---~~c~C~~G~ag~G~   56 (551)
T 3fby_A           27 SECHEHADCVLERDGS---RSCVCAVGWAGNGI   56 (551)
T ss_dssp             CCCCTTEEEEECTTSC---EEEEECTTEESSSS
T ss_pred             CCCCCCCeeEeCCCCC---EecCCCCCCCCCCc
Confidence            4899999999875355   89999999998877

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=83.15  E-value=0.21  Score=37.67  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=33.9

Q ss_pred             cCCCCCcCCCCCcCCcccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          64 TCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        64 ~c~~g~~g~~~~~~~c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      .|.++|.+.     .|. ..  ..|. ..|..++.| ++.    +|.|.+||.|+.|...
T Consensus       521 ~C~~gw~g~-----dc~-i~--~~Cp-~~C~ghG~C-~~G----~C~Cd~G~~G~~C~~~  566 (725)
T 2e26_A          521 DKQQTWAID-----NVY-IG--DGCL-DMCSGHGRC-VQG----SCVCDEQWGGLYCDEP  566 (725)
T ss_dssp             CTTCCEEEE-----EEE-EE--SCSS-GGGGGSEEE-ETT----EEEECTTEESTTSCEE
T ss_pred             ccCCCcccc-----ccc-cc--CCCC-cccCCCcEE-CCC----CEeeCCCccCCCcCcc
Confidence            567777777     665 33  4564 478878899 553    7999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	0.003

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.3 bits (71), Expect = 0.003
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 85  GNPCGGVTCEHGGICAPIGDRGYRCQC-EPGFTGE 118
            NPC    C++ G C   G   Y+C C   GF GE
Sbjct: 1   ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.21
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.16
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.14
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.1
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.09
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.09
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.9
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.89
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.82
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.8
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.79
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.67
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.67
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.61
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.55
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.55
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.53
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.46
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.44
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.44
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.38
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.36
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	98.25
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.15
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.12
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1nt0a3	45	Mannose-binding protein associated serine protease	98.11
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.1
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.1
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1szba2	45	Mannose-binding protein associated serine protease	98.06
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.05
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.04
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	98.02
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.0
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.96
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.82
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.79
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.77
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.7
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.69
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.67
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.66
d1nt0a3	45	Mannose-binding protein associated serine protease	97.62
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.62
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.61
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.61
d1szba2	45	Mannose-binding protein associated serine protease	97.47
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.37
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	97.33
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.32
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.3
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.25
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.01
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	96.95
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.9
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	96.33
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.95
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	95.4
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	95.32
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	94.86
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	94.72
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	94.58
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	94.28
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	93.02
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	91.38
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	89.68
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	86.51

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7e-12  Score=58.07  Aligned_cols=37  Identities=24%  Similarity=0.597  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      |+|.++||.+++.| ++..++|.|.|++||.|..|+..
T Consensus         2 d~C~~~PC~n~g~C-~~~~~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           2 NECVSNPCQNDATC-LDQIGEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CTTTTCCCCSSCEE-EECSSCEEEECCTTEESSSSCEE
T ss_pred             cCCcCCCCCCCCEE-ECCCCCEEEeCCCCCccCcCeeC
Confidence            88999999999999 89999999999999999999875

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.6e-11  Score=56.87  Aligned_cols=36  Identities=33%  Similarity=0.750  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      |+|.++||.+++.| ++..++|.|.|++||.|+.|++
T Consensus         4 d~C~~~PC~ngg~C-~~~~~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           4 DQCESNPCLNGGSC-KDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CTTTTCCCCTTCEE-EEETTEEEEECCTTCCSTTSCC
T ss_pred             ccCCCCCCCCCcEE-EcCCCCEEEECCCCCCCCCCCC
Confidence            89999999999999 8899999999999999999974

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.4e-11  Score=56.24  Aligned_cols=37  Identities=32%  Similarity=0.759  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      |+|.++||.+++.| ++..++|.|.|++||.|+.|++.
T Consensus         1 D~C~~~PC~ngg~C-~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETSPCQNQGKC-KDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTCCCCSSCEE-CCCSSSCCEECCTTEETTTTCEE
T ss_pred             CcCCCCCCCCCcEE-ECCCCCEEEECCCCCCcCcCeEc
Confidence            57888999999999 88999999999999999999965

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.2e-11  Score=56.48  Aligned_cols=36  Identities=33%  Similarity=0.776  Sum_probs=33.4

Q ss_pred             CCCC--CCCCCCCCeeccCCCCceeeeCCCCCccCCCcc
Q psy4097          86 NPCG--GVTCEHGGICAPIGDRGYRCQCEPGFTGESELL  122 (129)
Q Consensus        86 ~~C~--~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~  122 (129)
                      ++|.  ++||.+++.| ++..++|+|.|++||.|..|+.
T Consensus         4 deC~~~~~pC~n~g~C-~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           4 DECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CTTTSSSCSSSTTCEE-EECSSSEEEECCTTEESTTSCE
T ss_pred             ccccCCCCCCCCCcEe-ECCCCCEEeECCCCCcCCCCcC
Confidence            8887  5899999999 9999999999999999999985

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=1.6e-11  Score=56.20  Aligned_cols=35  Identities=31%  Similarity=0.794  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      |+|.++||.+++.| ++..++|.|.|++||.|+.|+
T Consensus         3 d~C~~~PC~ngg~C-~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           3 DQCASSPCQNGGSC-KDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CGGGGCCCCTTCEE-EEETTEEEEECCTTEESTTSC
T ss_pred             ccCCCCCCCCCCEE-ECCCCCeEEECCCCCcCCCCC
Confidence            88989999999999 889999999999999999986

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.7e-11  Score=53.98  Aligned_cols=35  Identities=31%  Similarity=0.760  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      |+|.++||.+++.| ++..++|+|.|++||.|+.||
T Consensus         1 d~C~~~PC~ngg~C-~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRC-LDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEE-EECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEE-ECCCCCeEEECCCCCCCCCcC
Confidence            57888999999999 888899999999999999986

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.8e-10  Score=53.53  Aligned_cols=37  Identities=32%  Similarity=0.732  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      +.|.++||.+++.| +...+.|+|.|++||.|+.|+.+
T Consensus         2 ~~C~~~pC~ngg~C-~~~~~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGEC-LETIGNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEE-EECSSSEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEE-ECCCCCeEEeCCCCccCCCCCCC
Confidence            56878999999999 88899999999999999999865

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-10  Score=53.72  Aligned_cols=37  Identities=30%  Similarity=0.766  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      +.|.++||.+++.| ++..++|.|.|++||.|+.|+..
T Consensus         2 ~~C~~~pC~ngg~C-~~~~~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGEC-VETINNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEE-EEETTEEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEE-ECCCCCEEEeCCCCCcCcCcCcc
Confidence            57888999999999 88899999999999999999864

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.8e-09  Score=50.02  Aligned_cols=39  Identities=26%  Similarity=0.623  Sum_probs=34.3

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ++ ++|...+.+|.++++|+++. ++   |.|.|++||.|.     .|+
T Consensus         2 Di-deC~~~~~pC~n~g~C~n~~-g~---y~C~C~~G~~G~-----~Ce   40 (42)
T d2vj3a1           2 DV-DECSLGANPCEHAGKCINTL-GS---FECQCLQGYTGP-----RCE   40 (42)
T ss_dssp             CC-CTTTSSSCSSSTTCEEEECS-SS---EEEECCTTEEST-----TSC
T ss_pred             CC-ccccCCCCCCCCCcEeECCC-CC---EEeECCCCCcCC-----CCc
Confidence            45 88986667999999999999 87   999999999998     775

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.6e-09  Score=52.12  Aligned_cols=37  Identities=30%  Similarity=0.774  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      ++|.++||.+ +.| ++..++|.|.|++||.|+.|+...
T Consensus         9 ~~C~~~PC~n-G~C-~~~~~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1           9 HPCASLCCGH-GTC-IDGIGSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             CSSSSTTTTS-EEE-CCCSSCCCEEECTTEESTTSCEEC
T ss_pred             CcccCCCCCC-CEE-ECCCCCCeEeCCCCCcCCCccccc
Confidence            7899999988 599 889999999999999999998653

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.5e-09  Score=48.95  Aligned_cols=37  Identities=32%  Similarity=0.739  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCeecc-CCCCceeeeCCCCCccCCCcccc
Q psy4097          88 CGGVTCEHGGICAP-IGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        88 C~~~~C~~~~~C~~-~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      |.++||.+++.|+. .....|.|.|++||.|+.|+...
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            45689999999942 23568999999999999999764

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.67  E-value=4.9e-09  Score=49.07  Aligned_cols=36  Identities=39%  Similarity=0.964  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCeeccC-CCCceeeeCCC-CCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPI-GDRGYRCQCEP-GFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~-~~~~~~C~C~~-g~~g~~c~~  122 (129)
                      ++|..+||.+++.| +. ..++|.|.|+. ||.|+.|++
T Consensus         3 d~C~~nPC~ngG~C-~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           3 NPCCYYPCQHQGIC-VRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CGGGGCCCCTTCEE-EEETTTEEEEECTTSSEETTTTCE
T ss_pred             ccCcCCCCCCCCEe-eeCCCCCEEEECCCCCcCCcCcCc
Confidence            78888999999999 65 46789999986 899999986

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=7.3e-09  Score=48.20  Aligned_cols=36  Identities=36%  Similarity=0.819  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCCeeccCC-CCceeeeCC-CCCccCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIG-DRGYRCQCE-PGFTGESELL  122 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~-~~~~~C~C~-~g~~g~~c~~  122 (129)
                      |+|.++||.+++.| ++. .++|+|.|+ +||.|..|++
T Consensus         2 d~C~~~PC~ngG~C-~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGEC-MSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEE-EEEETTEEEEECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEE-EECCCCCEEEeCcCCCcCCcCcCc
Confidence            78989999999999 653 678999997 6999999986

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=9.7e-09  Score=47.39  Aligned_cols=30  Identities=23%  Similarity=0.558  Sum_probs=27.1

Q ss_pred             CCCceeeeCCCceecccCCCCcccCCCCccc
Q psy4097           2 TPYVECINTQGYRKCGQCPHGWVGDGTTCRQ   32 (129)
Q Consensus         2 ~~~~~C~~~~g~~~C~~C~~g~~~~~~~C~~   32 (129)
                      ++++.|+|++|+|.| .|.+||.++|..|..
T Consensus        10 ~~~A~C~Nt~Gsy~C-~C~~Gy~GdG~~C~~   39 (40)
T d1gl4a2          10 SVHAECRDYATGFCC-RCVANYTGNGRQCVA   39 (40)
T ss_dssp             CTTEEEEECSSCEEE-EECTTEEECSSSEEE
T ss_pred             CCCCEeecCCCCeEe-ECCCCCcCCCCEeeC
Confidence            468999999999999 999999999988864

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.2e-08  Score=47.06  Aligned_cols=36  Identities=28%  Similarity=0.594  Sum_probs=28.8

Q ss_pred             cccCCCCCCCCCCCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          79 CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        79 c~~~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      |. ++  |+|...++...+.| +|..|+|.|.|++||.++
T Consensus         2 Cv-Di--dEC~~~~~~~~~~C-~Nt~Gsy~C~C~~Gy~~~   37 (43)
T d1emoa1           2 AV-DM--DECKEPDVCKHGQC-INTDGSYRCECPFGYILA   37 (43)
T ss_dssp             CC-CC--CSSSSTTSCSSSCC-CCCSSCCCCCCCTTEEES
T ss_pred             Cc-ce--eccCCcCCCCCCEe-ECCCCCeEeECCCCcccC
Confidence            55 77  99985554445689 999999999999999754

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.1e-08  Score=44.71  Aligned_cols=35  Identities=31%  Similarity=0.746  Sum_probs=31.7

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      |+|.++  ||.++++|++.. ++   |.|.|++||.|.     .|+
T Consensus         2 d~C~~~--PC~n~g~C~~~~-~~---y~C~C~~G~~G~-----~Ce   36 (39)
T d2vj3a2           2 NECVSN--PCQNDATCLDQI-GE---FQCICMPGYEGV-----HCE   36 (39)
T ss_dssp             CTTTTC--CCCSSCEEEECS-SC---EEEECCTTEESS-----SSC
T ss_pred             cCCcCC--CCCCCCEEECCC-CC---EEEeCCCCCccC-----cCe
Confidence            789877  999999999988 76   999999999999     886

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.55  E-value=3.1e-08  Score=44.96  Aligned_cols=32  Identities=22%  Similarity=0.664  Sum_probs=29.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      |+|.++  ||.++++|++.. ++   |.|.|++||.|.
T Consensus         3 d~C~~~--PC~ngg~C~~~~-~~---y~C~C~~g~~G~   34 (37)
T d2c4fl1           3 DQCASS--PCQNGGSCKDQL-QS---YICFCLPAFEGR   34 (37)
T ss_dssp             CGGGGC--CCCTTCEEEEET-TE---EEEECCTTEEST
T ss_pred             ccCCCC--CCCCCCEEECCC-CC---eEEECCCCCcCC
Confidence            889877  999999999888 76   999999999988

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.6e-08  Score=44.61  Aligned_cols=35  Identities=26%  Similarity=0.748  Sum_probs=31.4

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      |+|.++  ||.++++|++.. ++   |.|.|++||.|.     .|+
T Consensus         4 d~C~~~--PC~ngg~C~~~~-~~---y~C~C~~g~~G~-----~Ce   38 (39)
T d1edmb_           4 DQCESN--PCLNGGSCKDDI-NS---YECWCPFGFEGK-----NCE   38 (39)
T ss_dssp             CTTTTC--CCCTTCEEEEET-TE---EEEECCTTCCST-----TSC
T ss_pred             ccCCCC--CCCCCcEEEcCC-CC---EEEECCCCCCCC-----CCC
Confidence            889877  999999999988 76   999999999998     775

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.8e-08  Score=46.19  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             CcccCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCC
Q psy4097          29 TCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGV   74 (129)
Q Consensus        29 ~C~~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~   74 (129)
                      +|.++ |||...  .+..+++|.|+. |+   |.|.|++||...+.
T Consensus         1 sCvDi-dEC~~~--~~~~~~~C~Nt~-Gs---y~C~C~~Gy~~~g~   39 (43)
T d1emoa1           1 SAVDM-DECKEP--DVCKHGQCINTD-GS---YRCECPFGYILAGN   39 (43)
T ss_dssp             CCCCC-CSSSST--TSCSSSCCCCCS-SC---CCCCCCTTEEESSS
T ss_pred             CCcce-eccCCc--CCCCCCEeECCC-CC---eEeECCCCcccCCC
Confidence            47788 999876  344467899999 98   99999999986543

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.4e-07  Score=46.25  Aligned_cols=39  Identities=23%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCeec-cCCCCceeeeCCCCCccCCCcccc
Q psy4097          86 NPCGGVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLVP  124 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~~  124 (129)
                      .+|..++|.++++|+ +.....|+|.|++||.|++|+...
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~~   46 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccCC
Confidence            345567899999994 245578999999999999999653

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.4e-07  Score=42.22  Aligned_cols=32  Identities=25%  Similarity=0.723  Sum_probs=28.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      |+|.++  ||.++++|++.. ++   |+|.|+++|.|.
T Consensus         1 d~C~~~--PC~ngg~C~~~~-~~---y~C~C~~g~~G~   32 (35)
T d2vj3a3           1 DECASS--PCLHNGRCLDKI-NE---FQCECPTGFTGH   32 (35)
T ss_dssp             CTTTTC--CSTTTCEEEECS-SC---EEEECCTTEESS
T ss_pred             CCCCCC--CCCCCcEEECCC-CC---eEEECCCCCCCC
Confidence            467766  999999999887 66   999999999988

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.7e-08  Score=46.65  Aligned_cols=40  Identities=28%  Similarity=0.505  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCeec-cCCCCceeeeCCCCCccCCCccccc
Q psy4097          86 NPCGGVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                      .+|..++|.+++.|+ +.....|.|.|+.||.|.+|+...+
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~dl   45 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL   45 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSCEECS
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcCcc
Confidence            345567899999994 2455789999999999999997643

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.3e-08  Score=49.94  Aligned_cols=42  Identities=29%  Similarity=0.545  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCeec----cCCCCceeeeCCCCCccCCCccccccc
Q psy4097          86 NPCGGVTCEHGGICA----PIGDRGYRCQCEPGFTGESELLVPLLS  127 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~----~~~~~~~~C~C~~g~~g~~c~~~~~~~  127 (129)
                      ++|..++|.+++.|.    ++..++|.|.|++||.|++|+......
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~   52 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMK   52 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSS
T ss_pred             CCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCcc
Confidence            456678999999993    245678999999999999999765443

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.5e-07  Score=43.12  Aligned_cols=35  Identities=26%  Similarity=0.765  Sum_probs=30.6

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      |+|.++  ||.++++|++.. +.   |.|.|++||.|.     .|+
T Consensus         1 D~C~~~--PC~ngg~C~~~~-~~---y~C~C~~G~~G~-----~Ce   35 (39)
T d1xkba1           1 DQCETS--PCQNQGKCKDGL-GE---YTCTCLEGFEGK-----NCE   35 (39)
T ss_dssp             CTTTTC--CCCSSCEECCCS-SS---CCEECCTTEETT-----TTC
T ss_pred             CcCCCC--CCCCCcEEECCC-CC---EEEECCCCCCcC-----cCe
Confidence            567776  999999999887 66   999999999999     886

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=44.59  Aligned_cols=32  Identities=22%  Similarity=0.670  Sum_probs=26.4

Q ss_pred             CCCCC--CCCCCCCeeccCCCCceeeeCCCCCccCC
Q psy4097          86 NPCGG--VTCEHGGICAPIGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        86 ~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~g~~  119 (129)
                      |+|..  ..|.+ +.| +|+.|+|+|.|++||.++.
T Consensus         4 dEC~~~~~~C~~-~~C-~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           4 DECRISPDLCGR-GQC-VNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CTTTTCSSTTTT-SCE-EEETTEEEECCCSSEEECT
T ss_pred             cccCCCCCCCCC-CEe-EcCCCCeEEeCCCCCccCC
Confidence            88973  45754 589 9999999999999998764

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3e-07  Score=43.12  Aligned_cols=35  Identities=20%  Similarity=0.498  Sum_probs=29.8

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++ |||......|. +++|.|+. |+   |.|.|++||.+.
T Consensus         2 Di-dEC~~~~~~C~-~~~C~Nt~-Gs---y~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DI-DECRISPDLCG-RGQCVNTP-GD---FECKCDEGYESG   36 (44)
T ss_dssp             CC-CTTTTCSSTTT-TSCEEEET-TE---EEECCCSSEEEC
T ss_pred             cc-cccCCCCCCCC-CCEeEcCC-CC---eEEeCCCCCccC
Confidence            45 99988777786 47899999 98   999999999865

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.7e-07  Score=44.00  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=31.3

Q ss_pred             CCCCCCCCeeccCCCCceeeeCCCCCccCCCcccccc
Q psy4097          90 GVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLL  126 (129)
Q Consensus        90 ~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~  126 (129)
                      .+.|.+++.|.+.....+.|.|+.||.|++|+...++
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe~~~l~   49 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERVDLF   49 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETTTTCEECCC
T ss_pred             CCCccCCeEEEeCCCCCcEeECCCCCeeCCCccceec
Confidence            4679998888556778899999999999999987765

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.6e-07  Score=41.60  Aligned_cols=26  Identities=42%  Similarity=0.917  Sum_probs=21.5

Q ss_pred             CceeeeCCCceecccCCCCcc--cCCCCc
Q psy4097           4 YVECINTQGYRKCGQCPHGWV--GDGTTC   30 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~--~~~~~C   30 (129)
                      ++.|+|++|+|.| .|.+||.  .++.+|
T Consensus        15 ~~~C~Nt~Gsy~C-~C~~Gy~l~~~~~~C   42 (43)
T d1uzka2          15 GGKCINTFGSFQC-RCPTGYYLNEDTRVC   42 (43)
T ss_dssp             TSEEEECSSCEEE-ECCTTCCBCTTTCBB
T ss_pred             CCEEECCCCCeEe-ECCCCCeECcCCCcc
Confidence            4689999999999 9999998  344455

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.2e-07  Score=41.24  Aligned_cols=30  Identities=40%  Similarity=0.976  Sum_probs=24.9

Q ss_pred             CCCC-CCCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          86 NPCG-GVTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        86 ~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      |+|. .++|.+  .| +++.++|+|.|++||...
T Consensus         2 dEC~~~~~C~~--~C-~n~~Gsy~C~C~~Gy~L~   32 (41)
T d1i0ua2           2 DECQDPDTCSQ--LC-VNLEGGYKCQCEEGFQLD   32 (41)
T ss_dssp             CTTTTTTSCSS--CE-ECSSSCCEECCCTTEEEC
T ss_pred             ccCCCCCCCCC--Ee-ECCCCCEEeECCCCCeEC
Confidence            7786 467866  69 999999999999999743

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.4e-07  Score=42.44  Aligned_cols=30  Identities=23%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CCCC-CCCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          86 NPCG-GVTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        86 ~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      |+|. .++|.+  .| +|+.++|+|.|++||...
T Consensus         3 dEC~~~~~C~~--~C-~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           3 DECENGGFCSG--VC-HNLPGTFECICGPDSALA   33 (40)
T ss_dssp             CHHHHCSSCSS--EE-EECSSSEEEEECSSSSCE
T ss_pred             cccCCCcCccC--Ee-eCCCCCeEeECCCCCeeC
Confidence            6675 467865  79 999999999999999754

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=9e-07  Score=41.12  Aligned_cols=21  Identities=38%  Similarity=0.767  Sum_probs=19.4

Q ss_pred             CCceeeeCCCceecccCCCCcc
Q psy4097           3 PYVECINTQGYRKCGQCPHGWV   24 (129)
Q Consensus         3 ~~~~C~~~~g~~~C~~C~~g~~   24 (129)
                      .++.|+|++|+|.| .|++||.
T Consensus        13 ~~~~C~Nt~Gsy~C-~C~~Gy~   33 (42)
T d1lmja2          13 RGGVCHNTEGSYRC-ECPPGHQ   33 (42)
T ss_dssp             TTSEEEEETTEEEE-ESCTTSC
T ss_pred             CCCEeECCCCCeEE-eCCCCCe
Confidence            35789999999999 9999998

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=6.8e-07  Score=42.22  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=24.0

Q ss_pred             CceeeeCCCceecccCCCCcc--cCCCCccc
Q psy4097           4 YVECINTQGYRKCGQCPHGWV--GDGTTCRQ   32 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~--~~~~~C~~   32 (129)
                      ...|+|++|+|.| .|++||.  .|+++|+.
T Consensus        15 ~~~C~Nt~gsy~C-~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3          15 DHYCHNYLGGYYC-SCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             SSEEEEETTEEEE-ECCTTEEECTTSSCEEE
T ss_pred             CCEeecCCCCEEE-eCCCCCEECCCCCcccc
Confidence            4689999999999 9999998  56777764

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.4e-07  Score=43.32  Aligned_cols=33  Identities=30%  Similarity=0.700  Sum_probs=28.6

Q ss_pred             CCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          41 NGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        41 ~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .+.|..++.|.+++ ++   |.|.|.+||.|+|.   .|.
T Consensus         6 ~~~C~~~A~C~Nt~-Gs---y~C~C~~Gy~GdG~---~C~   38 (40)
T d1gl4a2           6 RHQCSVHAECRDYA-TG---FCCRCVANYTGNGR---QCV   38 (40)
T ss_dssp             GGGSCTTEEEEECS-SC---EEEEECTTEEECSS---SEE
T ss_pred             CCCCCCCCEeecCC-CC---eEeECCCCCcCCCC---Eee
Confidence            45788889999999 88   99999999999977   565

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=7.9e-07  Score=41.10  Aligned_cols=28  Identities=32%  Similarity=0.737  Sum_probs=23.7

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|+|++|+|.| .|++||.  .++.+|+++
T Consensus        12 ~~C~n~~Gsy~C-~C~~Gy~L~~d~~~C~ai   41 (41)
T d1i0ua2          12 QLCVNLEGGYKC-QCEEGFQLDPHTKACKAV   41 (41)
T ss_dssp             SCEECSSSCCEE-CCCTTEEECTTTCCEEEC
T ss_pred             CEeECCCCCEEe-ECCCCCeECCCCCccccC
Confidence            579999999999 9999999  567788653

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.9e-07  Score=41.39  Aligned_cols=27  Identities=30%  Similarity=0.682  Sum_probs=22.3

Q ss_pred             CceeeeCCCceecccCCCCcc--cCCCCcc
Q psy4097           4 YVECINTQGYRKCGQCPHGWV--GDGTTCR   31 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~--~~~~~C~   31 (129)
                      ++.|+|++|+|.| .|++||.  .++..|.
T Consensus        14 ~~~C~Nt~G~y~C-~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1          14 SGNCVNTPGSYIC-DCPPDFELNPTRVGCV   42 (43)
T ss_dssp             TSEEEEETTEEEE-ECCTTCEECTTSSBEE
T ss_pred             CCEeECCCCCEEE-ecCCCCEECCCCCccc
Confidence            4689999999999 9999998  3455664

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7e-07  Score=41.50  Aligned_cols=33  Identities=30%  Similarity=0.619  Sum_probs=28.2

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      |||...+..|. ++.|+|+. |+   |.|.|++||...
T Consensus         3 dEC~~~~~~C~-~~~C~Nt~-Gs---y~C~C~~Gy~l~   35 (42)
T d1lmja2           3 DECQRDPLLCR-GGVCHNTE-GS---YRCECPPGHQLS   35 (42)
T ss_dssp             CHHHHCSSTTT-TSEEEEET-TE---EEEESCTTSCCC
T ss_pred             cccCCCCCCCC-CCEeECCC-CC---eEEeCCCCCeEC
Confidence            88888777786 57999999 98   999999999754

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.2e-07  Score=41.73  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=23.9

Q ss_pred             CceeeeCCCceecccCCCCcc--cCCCCccc
Q psy4097           4 YVECINTQGYRKCGQCPHGWV--GDGTTCRQ   32 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~--~~~~~C~~   32 (129)
                      ...|+|++|+|.| .|.+||.  .++++|++
T Consensus        15 ~~~C~Nt~Gsy~C-~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2          15 DHHCHNHLGGFYC-SCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             SSEEEEETTEEEE-ECCTTEEECTTSSCEEE
T ss_pred             CCCCccCCCCeEE-ECCCCCeECCCCCCccC
Confidence            4589999999999 9999998  56777864

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.9e-07  Score=41.68  Aligned_cols=35  Identities=31%  Similarity=0.827  Sum_probs=30.5

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +.|.++  ||.++++|++.. +.   |.|.|++||.|.     .|+
T Consensus         2 ~~C~~~--pC~ngg~C~~~~-~~---~~C~C~~g~~G~-----~Ce   36 (39)
T d1g1ta2           2 AACTNT--SCSGHGECVETI-NN---YTCKCDPGFSGL-----KCE   36 (39)
T ss_dssp             CCCCTT--GGGGSEEEEEET-TE---EEEEECTTEEST-----TSC
T ss_pred             CcccCC--cCCCCcEEECCC-CC---EEEeCCCCCcCc-----CcC
Confidence            567766  999999999887 76   999999999999     886

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.1e-06  Score=42.98  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=23.0

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCccc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQ   32 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~   32 (129)
                      ..|+|++|+|.| .|++||+  .++.+|+.
T Consensus        24 ~~C~Nt~GsY~C-~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          24 HLCHNYVGGYFC-SCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SEEEEETTEEEE-ECSTTCEECTTSSCEEC
T ss_pred             CEeEcCCCCeEe-ECCCCCeECCCCCceec
Confidence            479999999999 9999998  56667753

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-06  Score=42.00  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             CCCCCCCCeeccCCCCceeeeCCCCCccCCCcccccc
Q psy4097          90 GVTCEHGGICAPIGDRGYRCQCEPGFTGESELLVPLL  126 (129)
Q Consensus        90 ~~~C~~~~~C~~~~~~~~~C~C~~g~~g~~c~~~~~~  126 (129)
                      .+.|.+++.|.+.....+.|.|+.||.|++|+...++
T Consensus        12 ~~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe~~~L~   48 (49)
T d1moxc_          12 TQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLL   48 (49)
T ss_dssp             SCSSTTEEEEEETTTTEEEEEECTTEESTTSCEECSC
T ss_pred             CCEeeCCeEEecCCCCCcEeECCCCCEecCCcccccc
Confidence            3678888777456667899999999999999987664

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6.7e-07  Score=41.78  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=28.9

Q ss_pred             cCCCCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          32 QGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++ |||...+..|. +++|+|++ |+   |.|.|++||...
T Consensus         2 Di-nEC~~~~~~c~-~~~C~Nt~-Gs---y~C~C~~Gy~l~   36 (43)
T d1uzka2           2 DI-DECQELPGLCQ-GGKCINTF-GS---FQCRCPTGYYLN   36 (43)
T ss_dssp             EC-CHHHHCGGGGB-TSEEEECS-SC---EEEECCTTCCBC
T ss_pred             Cc-ccccCCCCCcC-CCEEECCC-CC---eEeECCCCCeEC
Confidence            56 89987766776 46899999 98   999999999744

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.3e-07  Score=40.77  Aligned_cols=35  Identities=31%  Similarity=0.768  Sum_probs=30.6

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +.|.++  ||.++++|+... +.   |.|.|+++|.|.     .|+
T Consensus         2 ~~C~~~--pC~ngg~C~~~~-~~---y~C~C~~g~~G~-----~Ce   36 (40)
T d1g1sa2           2 ASCQDM--SCSKQGECLETI-GN---YTCSCYPGFYGP-----ECE   36 (40)
T ss_dssp             CCCCTT--GGGGSEEEEECS-SS---EEEEECTTEEST-----TSC
T ss_pred             CcccCC--cCCCCcEEECCC-CC---eEEeCCCCccCC-----CCC
Confidence            467766  999999999888 76   999999999999     887

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.3e-06  Score=37.49  Aligned_cols=31  Identities=32%  Similarity=0.819  Sum_probs=25.4

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ||.++++|+... .. ..|.|.|++||.|.     .|+
T Consensus         5 PC~ngG~C~~~~-~~-~~y~C~C~~g~~G~-----~Ce   35 (41)
T d1tpga1           5 RCFNGGTCQQAL-YF-SDFVCQCPEGFAGK-----SCE   35 (41)
T ss_dssp             CSCTTCEEEEES-SS-SCEEEECCTTCBSS-----SCC
T ss_pred             CCCCCCEEecCC-CC-CCeEECCCCCCCCC-----CcC
Confidence            999999999753 21 23999999999999     887

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.6e-06  Score=40.44  Aligned_cols=31  Identities=35%  Similarity=0.757  Sum_probs=24.0

Q ss_pred             CCCCC-CCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          86 NPCGG-VTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        86 ~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      ++|.. +.+- .+.| +|..++|+|.|++||...
T Consensus         4 dEC~~~~~~c-~~~C-~Nt~G~y~C~C~~Gy~l~   35 (43)
T d1uzka1           4 NECLDPTTCI-SGNC-VNTPGSYICDCPPDFELN   35 (43)
T ss_dssp             CGGGSTTSSB-TSEE-EEETTEEEEECCTTCEEC
T ss_pred             cccCCCCcCc-CCEe-ECCCCCEEEecCCCCEEC
Confidence            78873 3332 3489 999999999999999754

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.82  E-value=7.6e-06  Score=37.82  Aligned_cols=35  Identities=23%  Similarity=0.644  Sum_probs=29.2

Q ss_pred             CCccCCCCCCCCCCeeeeC-CCCCcceeeecCCC-CCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRET-SDTVRSVISCTCPP-GMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~-~~g~~~~~~c~c~~-g~~g~~~~~~~c~   80 (129)
                      ++|.++  +|.++++|+.. . ++   |.|.|+. ||.|.     .|+
T Consensus         3 d~C~~n--PC~ngG~C~~~~~-~~---y~C~C~~~G~~G~-----~Ce   39 (42)
T d1q4ga2           3 NPCCYY--PCQHQGICVRFGL-DR---YQCDCTRTGYSGP-----NCT   39 (42)
T ss_dssp             CGGGGC--CCCTTCEEEEETT-TE---EEEECTTSSEETT-----TTC
T ss_pred             ccCcCC--CCCCCCEeeeCCC-CC---EEEECCCCCcCCc-----CcC
Confidence            788877  99999999864 4 44   9999986 89998     776

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=9.3e-06  Score=38.20  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=26.6

Q ss_pred             CCCCCCCCeec-cCCCCceeeeCCCCCccCCCccc
Q psy4097          90 GVTCEHGGICA-PIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        90 ~~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      .++|.++ .|. ......+.|.|++||.|++|+..
T Consensus        11 ~~yC~nG-~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_          11 NGYCLHG-QCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CSSCSSE-EEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CCcCcCC-EEEEeCCCCccEeECCCCceecCceee
Confidence            4688885 673 35667899999999999999865

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.6e-06  Score=38.00  Aligned_cols=26  Identities=31%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCR   31 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~   31 (129)
                      ..|+|++|+|.| .|+.||.  .|+.+|.
T Consensus        13 ~~C~n~~Gsy~C-~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2          13 HFCNNFIGGYFC-SCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             SEEEEETTEEEE-ECCTTCEECTTSSCEE
T ss_pred             CEeecCCCCEEE-eCCCCCEECCCCCeec
Confidence            479999999999 9999998  5667775

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7.5e-06  Score=38.90  Aligned_cols=34  Identities=29%  Similarity=0.666  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ++|.++  ||.+ ++|.+.. ++   |.|.|++||.|.     .|+
T Consensus         9 ~~C~~~--PC~n-G~C~~~~-~~---y~C~C~~G~~G~-----~Ce   42 (48)
T d1autl1           9 HPCASL--CCGH-GTCIDGI-GS---FSCDCRSGWEGR-----FCQ   42 (48)
T ss_dssp             CSSSST--TTTS-EEECCCS-SC---CCEEECTTEEST-----TSC
T ss_pred             CcccCC--CCCC-CEEECCC-CC---CeEeCCCCCcCC-----Ccc
Confidence            778876  9987 7999887 76   999999999999     887

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=1.9e-05  Score=36.23  Aligned_cols=35  Identities=26%  Similarity=0.694  Sum_probs=28.5

Q ss_pred             CCccCCCCCCCCCCeeeeC-CCCCcceeeecCC-CCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRET-SDTVRSVISCTCP-PGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~~-~~g~~~~~~c~c~-~g~~g~~~~~~~c~   80 (129)
                      |+|.++  ||.++++|+.. . ++   |+|.|+ ++|.|.     .|+
T Consensus         2 d~C~~~--PC~ngG~C~~~~~-~~---y~C~C~~~gy~G~-----~Ce   38 (41)
T d1cvua2           2 NPCCSN--PCQNRGECMSTGF-DQ---YKCDCTRTGFYGE-----NCT   38 (41)
T ss_dssp             CTTTTC--CCCTTCEEEEEET-TE---EEEECTTSSEETT-----TTC
T ss_pred             CcCcCC--CCCCCCEEEECCC-CC---EEEeCcCCCcCCc-----CcC
Confidence            678776  99999999864 4 44   999996 699998     776

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2e-05  Score=38.26  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             cCCCCccCCCCCCCC------CCeeeeCCCCCcceeeecCCCCCcCC
Q psy4097          32 QGTTGCSVQNGGCHP------LATCRETSDTVRSVISCTCPPGMGGS   72 (129)
Q Consensus        32 ~~~~~C~~~~~~C~~------~~~C~~~~~g~~~~~~c~c~~g~~g~   72 (129)
                      ++ |||......|..      ...|+|++ |+   |.|.|++||...
T Consensus         3 Di-dEC~~~~~~c~~~~~~~c~~~C~Nt~-Gs---Y~C~C~~Gy~l~   44 (53)
T d1apqa_           3 DL-DECASRSKSGEEDPQPQCQHLCHNYV-GG---YFCSCRPGYELQ   44 (53)
T ss_dssp             SC-CTTTCSTTTCCCSSSCTTSSEEEEET-TE---EEEECSTTCEEC
T ss_pred             ec-ccccCCCCCcccCCCCCccCEeEcCC-CC---eEeECCCCCeEC
Confidence            45 788765544432      34799999 98   999999999733

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.4e-05  Score=36.51  Aligned_cols=25  Identities=24%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             ceeeeCCCceecccCCCCcc-cCCCCc
Q psy4097           5 VECINTQGYRKCGQCPHGWV-GDGTTC   30 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~-~~~~~C   30 (129)
                      ..|+|++++|.| .|++||. .++.+|
T Consensus        14 h~C~n~~g~~~C-~C~~Gy~L~d~~tC   39 (40)
T d3bpse1          14 HVCNDLKIGYEC-LCPDGFQLVAQRRC   39 (40)
T ss_dssp             SEEEECSSSEEE-ECCTTCCEETTTEE
T ss_pred             CEEEcCCCCEEE-ECCCCCEECCCCcC
Confidence            479999999999 9999998 445555

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=1.1e-05  Score=37.82  Aligned_cols=30  Identities=33%  Similarity=0.824  Sum_probs=22.4

Q ss_pred             CCCCC-----CCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          86 NPCGG-----VTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        86 ~~C~~-----~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      |+|..     .+|.+  .| +|+.++|+|.|++||+..
T Consensus         2 dEC~~~~~~~~~C~~--~C-~Nt~gsy~C~C~~Gy~L~   36 (45)
T d1nt0a3           2 DECRTSLGDSVPCDH--YC-HNYLGGYYCSCRVGYILH   36 (45)
T ss_dssp             CTTC-------CCSS--EE-EEETTEEEEECCTTEEEC
T ss_pred             cCCccCCCCcCCCCC--Ee-ecCCCCEEEeCCCCCEEC
Confidence            67752     23544  79 999999999999999733

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9.3e-06  Score=37.09  Aligned_cols=29  Identities=38%  Similarity=0.823  Sum_probs=24.0

Q ss_pred             CCCCC--CCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          86 NPCGG--VTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        86 ~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      |+|..  ..|.+  .| ++.+++|+|.|++||..
T Consensus         3 neC~~~nggC~h--~C-~n~~g~~~C~C~~Gy~L   33 (40)
T d3bpse1           3 NECLDNNGGCSH--VC-NDLKIGYECLCPDGFQL   33 (40)
T ss_dssp             CGGGTGGGGCSS--EE-EECSSSEEEECCTTCCE
T ss_pred             ccCCCCCCCCcC--EE-EcCCCCEEEECCCCCEE
Confidence            67763  55876  79 99999999999999974

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.9e-05  Score=36.44  Aligned_cols=25  Identities=36%  Similarity=0.794  Sum_probs=21.3

Q ss_pred             CCCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          91 VTCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        91 ~~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      .+|.+  .| ++..++|+|.|++||...
T Consensus         9 ~~C~~--~C-~n~~Gsy~C~C~~Gy~L~   33 (42)
T d1nzia2           9 VPCSH--FC-NNFIGGYFCSCPPEYFLH   33 (42)
T ss_dssp             CCSSS--EE-EEETTEEEEECCTTCEEC
T ss_pred             cCCCC--Ee-ecCCCCEEEeCCCCCEEC
Confidence            46866  79 999999999999999744

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.4e-05  Score=36.38  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             ceeeeCCCceecccCCCCcccC
Q psy4097           5 VECINTQGYRKCGQCPHGWVGD   26 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~~~   26 (129)
                      ..|+|++|+|.| .|++||...
T Consensus        13 ~~C~N~~Gsy~C-~C~~Gy~l~   33 (40)
T d1dx5i3          13 GVCHNLPGTFEC-ICGPDSALA   33 (40)
T ss_dssp             SEEEECSSSEEE-EECSSSSCE
T ss_pred             CEeeCCCCCeEe-ECCCCCeeC
Confidence            579999999999 999999843

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.5e-05  Score=36.07  Aligned_cols=21  Identities=24%  Similarity=0.621  Sum_probs=18.5

Q ss_pred             CeeccCCCCceeeeCCCCCccC
Q psy4097          97 GICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        97 ~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      ..| +|+.++|+|.|++||...
T Consensus        16 ~~C-~Nt~Gsy~C~C~~Gy~l~   36 (45)
T d1szba2          16 HHC-HNHLGGFYCSCRAGYVLH   36 (45)
T ss_dssp             SEE-EEETTEEEEECCTTEEEC
T ss_pred             CCC-ccCCCCeEEECCCCCeEC
Confidence            379 999999999999999743

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.8e-05  Score=35.81  Aligned_cols=28  Identities=29%  Similarity=0.832  Sum_probs=24.6

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|++++++|.| .|..||.  .|+.+|+.+
T Consensus        11 ~~C~~~~g~~~C-~C~~Gy~L~~D~~tC~~~   40 (50)
T d1autl2          11 HYCLEEVGWRRC-SCAPGYKLGDDLLQCHPA   40 (50)
T ss_dssp             SEEEECSSSEEE-ECCTTEEECTTSSCEEEC
T ss_pred             cEeecCCCCeEE-ECCCCCEECCCCCccccC
Confidence            478999999999 9999999  578899876

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.2e-05  Score=34.58  Aligned_cols=32  Identities=34%  Similarity=0.635  Sum_probs=24.7

Q ss_pred             CCCCCCCeec-cCCCCceeeeCCCCCccCCCccc
Q psy4097          91 VTCEHGGICA-PIGDRGYRCQCEPGFTGESELLV  123 (129)
Q Consensus        91 ~~C~~~~~C~-~~~~~~~~C~C~~g~~g~~c~~~  123 (129)
                      +.|.+ +.|. +.....+.|.|+.||.|++|+..
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq~~   40 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCICHPGYHGERCHGL   40 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             CEeEC-cEEeecCcCCCceeECCCCCeecCcccC
Confidence            45776 5884 34556788999999999999864

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=6.7e-05  Score=36.01  Aligned_cols=28  Identities=25%  Similarity=0.648  Sum_probs=24.6

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|++++++|.| .|..||.  .|+.+|...
T Consensus        12 h~C~n~~g~~~C-~C~~Gy~L~~D~~tC~~~   41 (51)
T d2p3ua1          12 QFCHEEQNSVVC-SCARGYTLADNGKACIPT   41 (51)
T ss_dssp             SEEEEETTEEEE-ECCTTEEECTTSSCEEES
T ss_pred             cEeecCCCCeEe-EcCCCCEECCCCCccccC
Confidence            468999999999 9999999  577899876

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=4.3e-05  Score=36.73  Aligned_cols=31  Identities=26%  Similarity=0.662  Sum_probs=25.9

Q ss_pred             ceeeeCCCceecccCCCCcc--cCCCCcccCCCCc
Q psy4097           5 VECINTQGYRKCGQCPHGWV--GDGTTCRQGTTGC   37 (129)
Q Consensus         5 ~~C~~~~g~~~C~~C~~g~~--~~~~~C~~~~~~C   37 (129)
                      ..|++++++|.| .|..||.  .|+.+|.++ +++
T Consensus        10 h~C~~~~~~~~C-~C~~Gy~L~~D~~tC~~~-~~~   42 (51)
T d1kigl_          10 QFCREERSEVRC-SCAHGYVLGDDSKSCVST-ERF   42 (51)
T ss_dssp             SCCCEETTEECC-CCCTTEEECTTSSCEEEC-SSS
T ss_pred             cEeEcCCCcEEe-EcCCCCEECCCCCccccC-Ccc
Confidence            358899999999 9999998  577899887 554

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00023  Score=34.36  Aligned_cols=36  Identities=19%  Similarity=0.484  Sum_probs=27.2

Q ss_pred             CccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          36 GCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        36 ~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|..+  +|.++++|.... +. ..|+|.|+++|.|.     .|+
T Consensus         8 ~c~~~--~C~NgG~C~~~~-~~-~~~~C~C~~gy~G~-----~Ce   43 (53)
T d3egfa_           8 SSYDG--YCLNGGVCMHIE-SL-DSYTCNCVIGYSGD-----RCQ   43 (53)
T ss_dssp             TTSSC--CSCSSCEEEEES-SS-SCEEEECCTTCCSS-----SSC
T ss_pred             CCCCC--CCCCCcEeeccC-CC-CCeEeECCCCCcCC-----CCc
Confidence            34444  899999998543 21 23999999999999     887

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.7e-05  Score=32.38  Aligned_cols=29  Identities=38%  Similarity=1.007  Sum_probs=24.5

Q ss_pred             CCCC-CCCCCCCCeeccCCCCceeeeCCCCCc
Q psy4097          86 NPCG-GVTCEHGGICAPIGDRGYRCQCEPGFT  116 (129)
Q Consensus        86 ~~C~-~~~C~~~~~C~~~~~~~~~C~C~~g~~  116 (129)
                      |+|+ .++|.++ .| .|..++|.|.|..||.
T Consensus         2 dECsignpCGnG-TC-tNviGgFec~C~~GFe   31 (39)
T d1emoa2           2 DECSVGNPCGNG-TC-KNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CGGGTTCSSSSS-CE-EECSSSEEECCSSSSC
T ss_pred             CccccCCccCCc-ee-eecccceEEeecCCcC
Confidence            5665 5788876 89 9999999999999995

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00012  Score=36.73  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=27.8

Q ss_pred             CCccCCCCCCCCCCeeee-----CCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          35 TGCSVQNGGCHPLATCRE-----TSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        35 ~~C~~~~~~C~~~~~C~~-----~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      ++|..+  +|.++++|..     .. +.   |.|.|++||.|.     .|+
T Consensus         7 ~ec~~~--~C~NgG~C~~~~~~~~~-~~---y~C~C~~gy~G~-----~Ce   46 (63)
T d1haea_           7 AEKEKT--FCVNGGECFMVKDLSNP-SR---YLCKCQPGFTGA-----RCT   46 (63)
T ss_dssp             CHHHHT--TSCTTCEEEEEESSSSS-CC---EEEECCTTEEST-----TSC
T ss_pred             CCCcCC--cCCCCCEEeecccccCC-CC---EEeECCCCCCCC-----CcC
Confidence            566665  9999999963     22 33   999999999999     887

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00052  Score=29.93  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=25.0

Q ss_pred             CCCCCCeeccC--CCCceeeeCCCCCccCCCccccc
Q psy4097          92 TCEHGGICAPI--GDRGYRCQCEPGFTGESELLVPL  125 (129)
Q Consensus        92 ~C~~~~~C~~~--~~~~~~C~C~~g~~g~~c~~~~~  125 (129)
                      .|.+++.|+..  -.+-.+|.||.+|.|+.|+++..
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt~   38 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS   38 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESS
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEeccc
Confidence            46788888411  23446799999999999998753

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00027  Score=33.38  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             CccCCCCCCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          36 GCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        36 ~C~~~~~~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      +|..+  +|.++++|.... .. ..+.|.|+++|.|.     .|+
T Consensus         6 ~c~~~--~C~ngG~C~~~~-~~-~~~~C~C~~gy~G~-----~Ce   41 (48)
T d1nqlb_           6 LSHDG--YCLHDGVCMYIE-AL-DKYACNCVVGYIGE-----RCQ   41 (48)
T ss_dssp             STTCC--EECTTCEEEEET-TT-TEEEEEECTTEEST-----TSC
T ss_pred             CCCCC--CCCCCcEEeeeC-CC-CCeEEeCCCCcccC-----CCC
Confidence            34444  899999998643 21 23999999999998     887

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0012  Score=28.51  Aligned_cols=20  Identities=30%  Similarity=0.639  Sum_probs=18.8

Q ss_pred             CceeeeCCCceecccCCCCcc
Q psy4097           4 YVECINTQGYRKCGQCPHGWV   24 (129)
Q Consensus         4 ~~~C~~~~g~~~C~~C~~g~~   24 (129)
                      +++|.|..|+|.| .|..||.
T Consensus        12 nGTCtNviGgFec-~C~~GFe   31 (39)
T d1emoa2          12 NGTCKNVIGGFEC-TCEEGFE   31 (39)
T ss_dssp             SSCEEECSSSEEE-CCSSSSC
T ss_pred             CceeeecccceEE-eecCCcC
Confidence            5789999999999 9999998

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=29.54  Aligned_cols=30  Identities=37%  Similarity=0.986  Sum_probs=24.0

Q ss_pred             CCCCCCCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        86 ~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      |+|...+|..  .|.....+.|+|.|..||..
T Consensus         5 DPCf~~~CE~--qCqP~~~~~Y~CiCaeGFaP   34 (43)
T d1dx5i1           5 DPCFRANCEY--QCQPLDQTSYLCVCAEGFAP   34 (43)
T ss_dssp             CGGGGCCCSS--EEEECSSSCEEEECCTTEEE
T ss_pred             ccccCCCcce--eeeeCCCCcceEEecccccc
Confidence            7887778887  58455677999999999964

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0034  Score=30.51  Aligned_cols=28  Identities=21%  Similarity=0.599  Sum_probs=23.1

Q ss_pred             ceeeeCC-CceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQ-GYRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~-g~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|++++ +++.| .|..||.  .|+.+|+.+
T Consensus        12 h~C~~~~~~~~~C-~C~~Gy~L~~D~~tC~~~   42 (57)
T d1rfnb_          12 QFCKNSADNKVVC-SCTEGYRLAENQKSCEPA   42 (57)
T ss_dssp             SEEEECTTSCEEE-ECCTTEEECTTSSSEEEC
T ss_pred             cEeeeCCCCCeEe-ECCCCCEECCCCCccccC
Confidence            4688887 47999 9999999  567899876

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0051  Score=28.99  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=16.7

Q ss_pred             eCCCceecccCCCCcc--cCCCCcc
Q psy4097           9 NTQGYRKCGQCPHGWV--GDGTTCR   31 (129)
Q Consensus         9 ~~~g~~~C~~C~~g~~--~~~~~C~   31 (129)
                      ++.++|.| .|+.||.  .|+++|.
T Consensus        26 n~~~~y~C-~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2          26 PHSPKFTC-ACPDGMLLARDMRSCL   49 (50)
T ss_dssp             TTCCSEEE-ECCTTCEECTTSSCEE
T ss_pred             cCCCCEEE-eCCCCCEECCCCCccc
Confidence            34478999 9999998  4566663

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0039  Score=29.43  Aligned_cols=24  Identities=33%  Similarity=0.746  Sum_probs=19.9

Q ss_pred             CCCCCCeeccCCCCceeeeCCCCCccC
Q psy4097          92 TCEHGGICAPIGDRGYRCQCEPGFTGE  118 (129)
Q Consensus        92 ~C~~~~~C~~~~~~~~~C~C~~g~~g~  118 (129)
                      .|.+  .| +++.++|+|.|+.||...
T Consensus         8 gC~~--~C-~~~~g~~~C~C~~Gy~L~   31 (50)
T d1autl2           8 GCTH--YC-LEEVGWRRCSCAPGYKLG   31 (50)
T ss_dssp             GCSS--EE-EECSSSEEEECCTTEEEC
T ss_pred             Cccc--Ee-ecCCCCeEEECCCCCEEC
Confidence            4665  79 899999999999999743

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.004  Score=29.49  Aligned_cols=23  Identities=26%  Similarity=0.781  Sum_probs=19.6

Q ss_pred             CCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          92 TCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        92 ~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      .|.+  .| ++..++|+|.|+.||..
T Consensus         9 gC~h--~C-~n~~g~~~C~C~~Gy~L   31 (51)
T d2p3ua1           9 DCDQ--FC-HEEQNSVVCSCARGYTL   31 (51)
T ss_dssp             GCSS--EE-EEETTEEEEECCTTEEE
T ss_pred             Cccc--Ee-ecCCCCeEeEcCCCCEE
Confidence            4665  79 89999999999999973

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.72  E-value=0.0047  Score=29.24  Aligned_cols=24  Identities=25%  Similarity=0.706  Sum_probs=19.5

Q ss_pred             CCCCCCCeeccCCCCceeeeCCCCCcc
Q psy4097          91 VTCEHGGICAPIGDRGYRCQCEPGFTG  117 (129)
Q Consensus        91 ~~C~~~~~C~~~~~~~~~C~C~~g~~g  117 (129)
                      ..|.+  .| ++..++|+|.|++||..
T Consensus         6 GgC~h--~C-~~~~~~~~C~C~~Gy~L   29 (51)
T d1kigl_           6 GGCDQ--FC-REERSEVRCSCAHGYVL   29 (51)
T ss_dssp             TSSSS--CC-CEETTEECCCCCTTEEE
T ss_pred             CCccc--Ee-EcCCCcEEeEcCCCCEE
Confidence            34665  58 88899999999999963

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0097  Score=28.34  Aligned_cols=28  Identities=32%  Similarity=0.875  Sum_probs=22.3

Q ss_pred             ceeeeCCC-ceecccCCCCcc--cCCCCcccC
Q psy4097           5 VECINTQG-YRKCGQCPHGWV--GDGTTCRQG   33 (129)
Q Consensus         5 ~~C~~~~g-~~~C~~C~~g~~--~~~~~C~~~   33 (129)
                      ..|+++++ .|.| .|..||.  .|+.+|...
T Consensus        11 h~C~~~~~~~~~C-~C~~Gy~L~~D~~tC~~~   41 (53)
T d2bz6l1          11 QYCSDHTGTKRSC-RCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             SEEEEETTTEEEE-ECCTTEEECTTSSCEEEC
T ss_pred             CEeeeCCCCCEEe-ECCCCCEECCCCCcccCC
Confidence            46888875 5889 9999998  567788765

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.016  Score=27.16  Aligned_cols=26  Identities=19%  Similarity=0.538  Sum_probs=18.9

Q ss_pred             CCCCCCCeecc------CCCCceeeeCCCCCccCC
Q psy4097          91 VTCEHGGICAP------IGDRGYRCQCEPGFTGES  119 (129)
Q Consensus        91 ~~C~~~~~C~~------~~~~~~~C~C~~g~~g~~  119 (129)
                      ..|.+  .| +      +..++|+|.|+.||....
T Consensus        12 GGC~h--~C-l~~p~~~n~~~~y~C~C~~G~~L~~   43 (50)
T d1ijqa2          12 GGCQY--LC-LPAPQINPHSPKFTCACPDGMLLAR   43 (50)
T ss_dssp             GGCSS--EE-EECCCCSTTCCSEEEECCTTCEECT
T ss_pred             CCCcC--cc-CCCcCcccCCCCEEEeCCCCCEECC
Confidence            34766  57 4      455799999999997543

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.072  Score=24.82  Aligned_cols=30  Identities=23%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CCCCCCeeeeCCCCCcceeeecCCCCCcCCCCCcCCcc
Q psy4097          43 GCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCA   80 (129)
Q Consensus        43 ~C~~~~~C~~~~~g~~~~~~c~c~~g~~g~~~~~~~c~   80 (129)
                      .|.+++.|......   .+.|+|+.+|.|.     .|+
T Consensus        15 yC~nGgcc~~~~~~---~~~C~C~~gy~G~-----rCe   44 (50)
T d1ioxa_          15 YCIKGRCRFVVAEQ---TPSCVCDEGYIGA-----RCE   44 (50)
T ss_dssp             SCTTCCEEEETTTT---EEEECCCTTEETT-----TTC
T ss_pred             CccCCeEEEeCCCC---CcEeECCCCCeeC-----CCc
Confidence            78887878644313   3899999999999     887

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.38  E-value=0.094  Score=24.87  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=16.1

Q ss_pred             CCCceee-eCCCCCccCCCccc
Q psy4097         103 GDRGYRC-QCEPGFTGESELLV  123 (129)
Q Consensus       103 ~~~~~~C-~C~~g~~g~~c~~~  123 (129)
                      ..+...| .|+++|.|..|+.-
T Consensus        14 ~~~~~vC~~C~~~~~G~~Ce~C   35 (55)
T d1kloa1          14 KTKEVVCTHCPTGTAGKRCELC   35 (55)
T ss_dssp             SSCCEEECSCCTTEESTTSCEE
T ss_pred             CCCCEEcCCCCCCCccCccccc
Confidence            3455677 59999999999853

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.075  Score=23.66  Aligned_cols=21  Identities=38%  Similarity=1.047  Sum_probs=16.4

Q ss_pred             CCeeccCCCCceeeeCCCCCccCCCc
Q psy4097          96 GGICAPIGDRGYRCQCEPGFTGESEL  121 (129)
Q Consensus        96 ~~~C~~~~~~~~~C~C~~g~~g~~c~  121 (129)
                      ++.| ..  +  .|.|.+||+|..|+
T Consensus        20 hG~C-~~--G--~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          20 RGLC-FC--G--KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HEEE-ET--T--EEEECTTCCTTTTC
T ss_pred             CCeE-EC--C--EEEcCCCCcccCcc
Confidence            3477 43  2  69999999999987

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.1  Score=21.37  Aligned_cols=15  Identities=27%  Similarity=0.554  Sum_probs=12.7

Q ss_pred             eeeCCCCCccCCCcc
Q psy4097         108 RCQCEPGFTGESELL  122 (129)
Q Consensus       108 ~C~C~~g~~g~~c~~  122 (129)
                      .|+|..||.|+.|+-
T Consensus        15 ~C~C~~gw~G~~CNC   29 (31)
T d1jv2b4          15 DCLCDSDWTGYYCNC   29 (31)
T ss_dssp             TTCCCTTEESSSSCE
T ss_pred             ceEccCCcccccccc
Confidence            478999999999874