Psyllid ID: psy4105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MKDHKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEEcccHHHccccccEEEEEcccHHHHHHHHHHccccccEEEEEEccccccHHcHHHHHHHHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
mkdhkadeidpkgkeilkpltngvclkayvpIHSLlvnwgdfpvslgggsAGAVVASRLSEVAHWSVLLLeagpdenevtdvpSLAAWLQLSKFdwqykteptgkqc
Flexible Loop (DISEMBL)
mkdhkadeidpkgkeilkpltngVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC
Low Complexity Region (SEG)
MKDHKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPvslgggsagavvasRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC
Disordered region (IsUnstruct)
***************ILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQY*********
Disordered Region (DISOPRED)
*KDHKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPT****
Disordered Region (DISEMBL)
********IDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYK********
Disordered Region (DISPRO)
****KADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKDHKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.616	0.105	0.537	5e-11
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.616	0.105	0.537	5e-11
P64264	528	Uncharacterized GMC-type	yes	N/A	0.551	0.111	0.533	1e-07
P64263	528	Uncharacterized GMC-type	yes	N/A	0.551	0.111	0.533	1e-07
B2FQ89	560	Choline dehydrogenase OS=	yes	N/A	0.551	0.105	0.476	2e-06
B4SHV9	560	Choline dehydrogenase OS=	yes	N/A	0.551	0.105	0.476	2e-06
Q6FDF9	553	Choline dehydrogenase OS=	yes	N/A	0.551	0.106	0.460	3e-06
Q13NG7	561	Choline dehydrogenase OS=	yes	N/A	0.551	0.105	0.476	3e-06
B5Z1R0	562	Choline dehydrogenase OS=	yes	N/A	0.551	0.104	0.492	3e-06
Q8X6C6	562	Choline dehydrogenase OS=	N/A	N/A	0.551	0.104	0.492	3e-06

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 41  DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
           DF V +GGGSAG+VVASRLSEV  W VLL+EAG DE     +PS+      S  D++Y T
Sbjct: 66  DFIV-IGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 101 EPTGKQC 107
           EP    C
Sbjct: 125 EPEPMAC 131

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 41  DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
           DF V +GGGSAG+VVASRLSEV  W VLL+EAG DE     +PS+      S  D++Y T
Sbjct: 66  DFIV-IGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124

Query: 101 EPTGKQC 107
           EP    C
Sbjct: 125 EPERMAC 131

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           V +G GSAGAVVASRLS     +V+ LEAGP D+N    VP+  + L  S+ DW Y TEP
Sbjct: 8   VVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEP 67

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           V +G GSAGAVVASRLS     +V+ LEAGP D+N    VP+  + L  S+ DW Y TEP
Sbjct: 8   VVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEP 67

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betA PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
           + +G GSAG V+A+RL+E A  SVLLLEAG  +  +   T +P +LA  LQ  +++W YK
Sbjct: 10  IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYK 69

Query: 100 TEP 102
           T+P
Sbjct: 70  TDP 72

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Stenotrophomonas maltophilia (strain K279a) (taxid: 522373)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betA PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
           + +G GSAG V+A+RL+E A  SVLLLEAG  +  +   T +P +LA  LQ  +++W YK
Sbjct: 10  IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYK 69

Query: 100 TEP 102
           T+P
Sbjct: 70  TDP 72

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Stenotrophomonas maltophilia (strain R551-3) (taxid: 391008)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
           + +G GSAG V+A+RL+E A  SVLLLEAG  +  +   T +P+  A+ LQ  +++W Y 
Sbjct: 9   IIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNWAYL 68

Query: 100 TEP 102
           TEP
Sbjct: 69  TEP 71

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
           + +G GSAG V+ASRL+E A  +VLLLEA GPD   +  T +P+  A+ LQ  +++W Y+
Sbjct: 9   IIVGAGSAGNVLASRLAEDADVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAYE 68

Query: 100 TEP 102
           T+P
Sbjct: 69  TDP 71

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
           + +G GSAG V+A+RL+E  + SVLLLEA GPD   +  T +P +LA  LQ  +++W Y+
Sbjct: 6   IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65

Query: 100 TEP 102
           TEP
Sbjct: 66  TEP 68

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Escherichia coli O157:H7 (strain EC4115 / EHEC) (taxid: 444450)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
           + +G GSAG V+A+RL+E  + SVLLLEA GPD   +  T +P +LA  LQ  +++W Y+
Sbjct: 6   IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65

Query: 100 TEP 102
           TEP
Sbjct: 66  TEP 68

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Escherichia coli O157:H7 (taxid: 83334)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
193664531	628	PREDICTED: glucose dehydrogenase [accept	0.616	0.105	0.835	9e-26
307172021	630	Glucose dehydrogenase [acceptor] [Campon	0.794	0.134	0.603	2e-24
156551708	624	PREDICTED: glucose dehydrogenase [accept	0.616	0.105	0.791	2e-24
383860470	624	PREDICTED: glucose dehydrogenase [accept	0.822	0.141	0.557	3e-24
322796401	624	hypothetical protein SINV_00375 [Solenop	0.822	0.141	0.576	3e-24
340720647	626	PREDICTED: glucose dehydrogenase [accept	0.822	0.140	0.567	4e-24
307206069	618	Glucose dehydrogenase [acceptor] [Harpeg	0.822	0.142	0.548	8e-24
91085217	617	PREDICTED: similar to CG9518 CG9518-PA [	0.616	0.106	0.791	1e-23
350401264	627	PREDICTED: glucose dehydrogenase [accept	0.822	0.140	0.557	1e-23
328785230	625	PREDICTED: glucose dehydrogenase [accept	0.813	0.139	0.552	1e-23

>gi|193664531|ref|XP_001948787.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/67 (83%), Positives = 62/67 (92%), Gaps = 1/67 (1%)

Query: 41  DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
           DF V +GGGSAGAVVASRLSE+ HWSVLLLEAGPDENE++DVPSLAA+LQLS+ DWQYKT
Sbjct: 58  DFIV-IGGGSAGAVVASRLSEIGHWSVLLLEAGPDENELSDVPSLAAYLQLSRLDWQYKT 116

Query: 101 EPTGKQC 107
           EPTGK C
Sbjct: 117 EPTGKAC 123

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|307172021|gb|EFN63615.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 76/101 (75%), Gaps = 16/101 (15%)

Query: 7   DEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWS 66
           D++DP+ + I +            P++S   N+ DF V +GGGSAGAVVASRLSE+  W+
Sbjct: 39  DQLDPESRPIDR-----------YPLYS---NY-DFIV-VGGGSAGAVVASRLSEIPDWN 82

Query: 67  VLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
           VLLLEAGPDENE+TDVPSLAA+LQL+K DW+YKTEPTGK C
Sbjct: 83  VLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKTEPTGKAC 123

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/67 (79%), Positives = 60/67 (89%), Gaps = 1/67 (1%)

Query: 41  DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
           DF V +GGGSAGAVVASRLSE+ HW VLLLEAGPDENE+TDVPSLAA+LQL+K DW+YKT
Sbjct: 58  DF-VVIGGGSAGAVVASRLSEIMHWKVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKT 116

Query: 101 EPTGKQC 107
           EP G+ C
Sbjct: 117 EPNGRSC 123

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383860470|ref|XP_003705712.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 77/104 (74%), Gaps = 16/104 (15%)

Query: 4   HKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVA 63
           ++ D++DP+ + I +            P+++      DF V +GGGSAGAVVASRLSE+ 
Sbjct: 36  YRYDQLDPESRPIDR-----------YPLYAEY----DF-VVVGGGSAGAVVASRLSEIP 79

Query: 64  HWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
           +W+VLLLEAGPDENE+TDVPSLAA+LQL+K DW+YKTEPTG+ C
Sbjct: 80  NWNVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKTEPTGRAC 123

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|322796401|gb|EFZ18935.1| hypothetical protein SINV_00375 [Solenopsis invicta]

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 16/104 (15%)

Query: 4   HKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVA 63
           ++ D++DP+ + I K              H L   + DF V +GGGSAGAV+ASRLSE+ 
Sbjct: 36  YRYDQLDPESRPIDK--------------HPLYFEY-DFIV-IGGGSAGAVIASRLSEIP 79

Query: 64  HWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
            W+VLLLEAGPDENE+TDVPSLAA+LQLSK DW+YKTE TGK C
Sbjct: 80  DWNVLLLEAGPDENEITDVPSLAAYLQLSKLDWKYKTEATGKAC 123

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720647|ref|XP_003398745.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 76/104 (73%), Gaps = 16/104 (15%)

Query: 4   HKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVA 63
           ++ D++DP+ + I K            P+++      DF V +G GSAGAVVA+RLSE+A
Sbjct: 36  YRYDQLDPESRPIDK-----------YPLYAEY----DF-VVVGAGSAGAVVANRLSEIA 79

Query: 64  HWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
            W+VLLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG+ C
Sbjct: 80  KWNVLLLEAGPDENEVTDVPSLAAYLQLTKLDWKYKTEPTGRAC 123

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307206069|gb|EFN84162.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator]

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 76/104 (73%), Gaps = 16/104 (15%)

Query: 4   HKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVA 63
           ++ D++DP+ + I +            P+++      DF V +GGGSAGAVVASRLSE+ 
Sbjct: 36  YRYDQLDPESRPINR-----------YPLYAEY----DF-VVVGGGSAGAVVASRLSEIP 79

Query: 64  HWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
            W+VLLLEAGPDENE++DVPSLAA+LQL+K DW+YKTEPTG+ C
Sbjct: 80  EWNVLLLEAGPDENEISDVPSLAAYLQLTKLDWKYKTEPTGRAC 123

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|91085217|ref|XP_972484.1| PREDICTED: similar to CG9518 CG9518-PA [Tribolium castaneum] gi|270009083|gb|EFA05531.1| hypothetical protein TcasGA2_TC015718 [Tribolium castaneum]

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/67 (79%), Positives = 60/67 (89%), Gaps = 1/67 (1%)

Query: 41  DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
           DF V +GGGSAGAVVASRLSE+  W+VLLLEAGPDENE++DVPSLAA+LQLSK DW YKT
Sbjct: 57  DF-VVVGGGSAGAVVASRLSEIPSWNVLLLEAGPDENEISDVPSLAAYLQLSKLDWTYKT 115

Query: 101 EPTGKQC 107
           EPTG+ C
Sbjct: 116 EPTGRAC 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401264|ref|XP_003486103.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 16/104 (15%)

Query: 4   HKADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVA 63
           ++ D++DP+ + I K            P+++      DF V +G GSAGAVVA+RLSE++
Sbjct: 36  YRYDQLDPESRPIDK-----------YPLYAEY----DF-VIVGAGSAGAVVANRLSEIS 79

Query: 64  HWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
            W+VLLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG+ C
Sbjct: 80  KWNVLLLEAGPDENEVTDVPSLAAYLQLTKLDWKYKTEPTGRAC 123

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|328785230|ref|XP_003250566.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Apis mellifera] gi|328785232|ref|XP_003250567.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Apis mellifera] gi|328785234|ref|XP_003250568.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 3 [Apis mellifera]

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 18/105 (17%)

Query: 4   HKADEIDPKGKEILK-PLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASRLSEV 62
           ++ D++DP+ + I + PL          P +  +V        +GGGSAGAVVA+RLSE+
Sbjct: 36  YRYDQLDPESRPIDRYPL---------YPEYDFIV--------VGGGSAGAVVANRLSEI 78

Query: 63  AHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             W+VLLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG+ C
Sbjct: 79  PKWNVLLLEAGPDENEVTDVPSLAAYLQLTKIDWKYKTEPTGRAC 123

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.467	0.071	0.76	1.1e-15
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.467	0.079	0.7	2.8e-14
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.429	0.053	0.630	5.9e-11
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.467	0.068	0.54	2.6e-10
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.467	0.080	0.54	1.4e-08
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.467	0.081	0.52	6.1e-08
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.467	0.080	0.52	7.8e-08
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.467	0.078	0.54	8.1e-08
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.467	0.080	0.46	4.1e-06
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.467	0.081	0.5	1.4e-05

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSEV  W VLL+EAGPDENE++DVPSLAA+LQLSK DW YKTEP+ K C
Sbjct:    74 RLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKTEPSTKAC 123

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 35/50 (70%), Positives = 42/50 (84%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RL+EV +W+VLLLEAG DE E+TDVP +A +LQLSK DWQYKTEP+G  C
Sbjct:    77 RLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKTEPSGTSC 126

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 29/46 (63%), Positives = 40/46 (86%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPT 103
             RLSEV +W+VLLLEAG DE E++DVP+LA +LQL++ DW+Y+T P+
Sbjct:   313 RLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDWKYQTTPS 358

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE+ HW +LLLEAG  E E++DVP L+ +L  SK DW+Y+T+P    C
Sbjct:   112 RLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTAC 161

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE   W VLLLEAG  EN   D+P +A  LQL + +W+YKTEP+   C
Sbjct:    79 RLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYKTEPSNSYC 128

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE++  SVLLLEAG  E  ++DVP  AA  Q+++++W YK EPT   C
Sbjct:    65 RLSEISSASVLLLEAGDQETFISDVPLTAALTQMTRYNWGYKAEPTEHAC 114

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE   W VLLLEAG  E  V DVP +A +LQL + +W+Y+T+P+   C
Sbjct:    77 RLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNWKYRTQPSDHAC 126

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 27/50 (54%), Positives = 33/50 (66%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE   WSVLLLEAG DE  + D+P L    Q S +DW+Y TEP+ + C
Sbjct:    74 RLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLTEPSDRYC 123

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 117 (46.2 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RL+EV +W VLLLEAG D    T+  +     Q S++DWQY ++P G+ C
Sbjct:    75 RLAEVKNWKVLLLEAGGDPPIETEFVAWHMATQFSEWDWQYHSKPNGRAC 124

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 25/50 (50%), Positives = 30/50 (60%)

Query:    58 RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107
             RLSE  +WSV L+EAG  EN V  VP LAA LQ +  +W Y + P    C
Sbjct:    68 RLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQSTASNWGYNSTPQRHAC 117

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P64263	Y1279_MYCTU	1, ., 1, ., -, ., -	0.5333	0.5514	0.1117	yes	N/A
P64264	Y1310_MYCBO	1, ., 1, ., -, ., -	0.5333	0.5514	0.1117	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	4e-12
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	1e-09
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	8e-09
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	7e-08

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAG-PDENE--VTDVPS-LAAWLQLSKFDWQYKTEP 102
           G GSAG V+A+RLSE    SVLLLEAG PD        +P+ LA  LQ  +++W Y+TEP
Sbjct: 12  GAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEP 71

Length = 560

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 44  VSLGGGSAGAVVASRLSEVAHWSVLLLEAG-PD--ENEVTDVPSLAAW-LQLSKFDWQYK 99
           + +GGGSAG+V+A RLSE    SVL+LEAG  D   + +  +P+  A+     +++W Y+
Sbjct: 3   IIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYE 62

Query: 100 TEP 102
           TEP
Sbjct: 63  TEP 65

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQLSKF-DWQYKTEPT 103
           G GSAG+V+A+RLS+    SVL+LEAG  D   +  +P+  A+L      DW ++TEP 
Sbjct: 14  GSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPE 71

Length = 542

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPS-LAAWLQL-----SKFDWQYKT 100
           GGGSAG VVA+RLSE    +V +LEAGP   + + +P+ L   L+L     S   W+Y  
Sbjct: 7   GGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVVWRYGV 66

Query: 101 EPT 103
           E T
Sbjct: 67  ELT 69

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG1238|consensus	623		99.67
PRK02106	560	choline dehydrogenase; Validated	99.33
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.29
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.26
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.2
PLN02785	587	Protein HOTHEAD	99.02
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.29
PRK10015	429	oxidoreductase; Provisional	98.16
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.15
PRK10157	428	putative oxidoreductase FixC; Provisional	98.15
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.09
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.09
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.03
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.99
PRK09126	392	hypothetical protein; Provisional	97.97
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.97
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.97
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.96
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.95
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.94
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.94
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.93
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.92
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.92
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.91
PLN02463	447	lycopene beta cyclase	97.91
PRK08013	400	oxidoreductase; Provisional	97.91
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.91
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.9
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.89
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.89
PRK07045	388	putative monooxygenase; Reviewed	97.88
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.88
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.88
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.87
PLN02697	529	lycopene epsilon cyclase	97.87
PRK08274	466	tricarballylate dehydrogenase; Validated	97.87
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.87
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.86
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.86
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.85
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.84
PRK06370	463	mercuric reductase; Validated	97.83
COG2081	408	Predicted flavoproteins [General function predicti	97.83
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.82
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.82
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.82
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.82
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.82
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.81
PRK06116	450	glutathione reductase; Validated	97.81
PRK06185	407	hypothetical protein; Provisional	97.81
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.8
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.79
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.78
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.78
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.78
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.77
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.76
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.76
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.76
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.76
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.75
PRK11445	351	putative oxidoreductase; Provisional	97.75
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.74
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.73
PRK05257	494	malate:quinone oxidoreductase; Validated	97.73
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.73
PRK07121	492	hypothetical protein; Validated	97.72
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.72
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.72
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.72
PRK07208	479	hypothetical protein; Provisional	97.71
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.7
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.7
PRK06996	398	hypothetical protein; Provisional	97.69
PLN02268	435	probable polyamine oxidase	97.69
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.69
PRK06184	502	hypothetical protein; Provisional	97.69
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.68
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.68
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.68
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.68
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.68
KOG0029|consensus	501		97.67
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.67
PLN02985	514	squalene monooxygenase	97.66
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.66
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.66
TIGR02053	463	MerA mercuric reductase. This model represents the	97.64
PRK08244	493	hypothetical protein; Provisional	97.64
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.64
PRK06847	375	hypothetical protein; Provisional	97.63
PRK07236	386	hypothetical protein; Provisional	97.63
PRK06753	373	hypothetical protein; Provisional	97.63
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.63
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.63
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.62
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.62
PRK07190	487	hypothetical protein; Provisional	97.62
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.62
PLN02661	357	Putative thiazole synthesis	97.62
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.61
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.61
PLN02576	496	protoporphyrinogen oxidase	97.6
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.6
PRK14694	468	putative mercuric reductase; Provisional	97.59
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.59
PRK08163	396	salicylate hydroxylase; Provisional	97.59
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.58
PRK06126	545	hypothetical protein; Provisional	97.58
PRK07588	391	hypothetical protein; Provisional	97.58
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.58
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.58
PTZ00367	567	squalene epoxidase; Provisional	97.56
PRK13748	561	putative mercuric reductase; Provisional	97.55
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.55
PTZ00058	561	glutathione reductase; Provisional	97.55
PRK06834	488	hypothetical protein; Provisional	97.55
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.55
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.54
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.54
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.54
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.53
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.53
PRK07233	434	hypothetical protein; Provisional	97.52
PTZ00052	499	thioredoxin reductase; Provisional	97.52
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.51
COG0579	429	Predicted dehydrogenase [General function predicti	97.5
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.5
PRK07804	541	L-aspartate oxidase; Provisional	97.5
PRK08275	554	putative oxidoreductase; Provisional	97.49
PRK08401	466	L-aspartate oxidase; Provisional	97.49
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.48
PLN02815	594	L-aspartate oxidase	97.47
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.47
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.47
PRK07538	413	hypothetical protein; Provisional	97.46
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.46
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.45
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.45
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.45
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.45
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.44
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.43
PRK10262	321	thioredoxin reductase; Provisional	97.42
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.41
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.41
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.4
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.4
PRK06175	433	L-aspartate oxidase; Provisional	97.4
PLN02507	499	glutathione reductase	97.4
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.39
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.39
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.38
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.38
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.37
PRK08294	634	phenol 2-monooxygenase; Provisional	97.36
PRK05868	372	hypothetical protein; Validated	97.35
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.34
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.33
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.33
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.32
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.32
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.32
PRK07395	553	L-aspartate oxidase; Provisional	97.29
PLN02546	558	glutathione reductase	97.28
KOG1298|consensus	509		97.28
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.28
PRK06475	400	salicylate hydroxylase; Provisional	97.27
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.27
PRK14727	479	putative mercuric reductase; Provisional	97.26
PLN02568	539	polyamine oxidase	97.25
KOG2415|consensus	621		97.23
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.22
PRK08071	510	L-aspartate oxidase; Provisional	97.22
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.21
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.21
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.19
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.19
PRK09077	536	L-aspartate oxidase; Provisional	97.18
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.18
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.18
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.17
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.17
PRK12839	572	hypothetical protein; Provisional	97.14
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.13
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.13
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.11
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.07
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.07
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.06
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.06
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.05
PLN02676	487	polyamine oxidase	97.05
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.03
COG3573	552	Predicted oxidoreductase [General function predict	97.01
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.0
PRK12831	464	putative oxidoreductase; Provisional	96.99
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.99
PRK07846	451	mycothione reductase; Reviewed	96.98
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.96
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.89
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.88
PRK07512	513	L-aspartate oxidase; Provisional	96.86
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.85
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.84
KOG0685|consensus	498		96.83
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.82
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.82
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.81
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.8
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.79
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.78
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.78
PLN02852	491	ferredoxin-NADP+ reductase	96.78
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.72
KOG2614|consensus	420		96.7
KOG2665|consensus	453		96.69
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.67
KOG2960|consensus	328		96.61
KOG0405|consensus	478		96.6
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.6
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.55
PLN02612	567	phytoene desaturase	96.53
KOG3855|consensus	481		96.53
COG3349	485	Uncharacterized conserved protein [Function unknow	96.53
KOG1399|consensus	448		96.51
KOG2820|consensus	399		96.5
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.49
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.48
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.47
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.46
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.46
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.45
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.35
PLN02529	738	lysine-specific histone demethylase 1	96.34
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.33
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.33
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.32
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.26
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.21
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.19
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.16
KOG4716|consensus	503		96.16
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.09
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.04
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.03
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.02
PLN02487	569	zeta-carotene desaturase	96.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.99
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.92
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.91
PTZ00188	506	adrenodoxin reductase; Provisional	95.86
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.84
PLN03000	881	amine oxidase	95.78
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	95.75
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.72
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.69
PRK09897	534	hypothetical protein; Provisional	95.67
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.66
KOG2853|consensus	509		95.65
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.63
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.53
KOG1276|consensus	491		95.52
PRK13984	604	putative oxidoreductase; Provisional	95.47
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.43
KOG0042|consensus	680		95.41
PLN02976	1713	amine oxidase	95.24
KOG3851|consensus	446		94.94
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	94.87
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	94.51
KOG1335|consensus	506		94.13
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.95
KOG2755|consensus	334		93.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.4
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.37
KOG2311|consensus	679		93.24
COG2907	447	Predicted NAD/FAD-binding protein [General functio	93.08
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.05
KOG4254|consensus	561		93.02
KOG1800|consensus	468		92.79
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.44
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	92.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.3
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.18
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	91.97
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	91.93
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	91.88
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	91.62
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	91.58
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.44
KOG2404|consensus	477		91.4
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	91.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	91.07
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	90.97
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	90.6
KOG4405|consensus	547		90.56
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.44
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	90.17
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	89.84
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.82
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	89.76
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	89.51
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.42
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	89.22
TIGR02053	463	MerA mercuric reductase. This model represents the	89.08
PRK07846	451	mycothione reductase; Reviewed	89.06
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	88.68
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.65
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	88.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.5
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	88.36
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	88.34
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	88.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	88.26
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.24
KOG2844|consensus	856		88.14
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	88.03
PRK13512	438	coenzyme A disulfide reductase; Provisional	87.98
PRK06370	463	mercuric reductase; Validated	87.96
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	87.86
KOG0399|consensus	2142		87.7
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	87.42
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.41
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	87.23
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	86.99
KOG2495|consensus	491		86.91
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.86
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.58
PRK06719	157	precorrin-2 dehydrogenase; Validated	86.46
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	86.41
PRK09564	444	coenzyme A disulfide reductase; Reviewed	86.22
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	86.08
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	86.0
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	86.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	85.98
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	85.84
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	85.79
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.6
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.4
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	85.11
KOG1439|consensus	440		84.9
KOG3923|consensus	342		84.88
PRK07845	466	flavoprotein disulfide reductase; Reviewed	84.86
PRK10669	558	putative cation:proton antiport protein; Provision	84.82
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	84.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	84.74
PRK13748	561	putative mercuric reductase; Provisional	84.66
PRK06116	450	glutathione reductase; Validated	84.6
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	83.99
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	83.97
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	83.88
KOG2852|consensus	380		83.65
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.64
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.51
PLN02507	499	glutathione reductase	83.5
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	83.44
PRK14694	468	putative mercuric reductase; Provisional	83.36
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	83.34
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.32
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	83.13
PRK10262	321	thioredoxin reductase; Provisional	82.9
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.56
PRK09496	453	trkA potassium transporter peripheral membrane com	82.4
PTZ00153	659	lipoamide dehydrogenase; Provisional	82.39
PRK14727	479	putative mercuric reductase; Provisional	82.34
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.05
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	81.96
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.85
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.8
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	81.64
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	81.51
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	81.45
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	81.44
PRK09496	453	trkA potassium transporter peripheral membrane com	81.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	80.79
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.74
PLN02546	558	glutathione reductase	80.74
PRK14989	847	nitrite reductase subunit NirD; Provisional	80.68
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	80.66
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	80.23

>KOG1238|consensus

Probab=99.67  E-value=3.4e-17  Score=138.97  Aligned_cols=71  Identities=55%  Similarity=0.858  Sum_probs=65.6

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhhccCCCccceeeeeeCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC  107 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~l~~s~~dW~y~T~PQ~~~c  107 (107)
                      ....|||| |||||+|||++|++|+|++.++|||||+|+.++...++|..+..++.+.+||.|.|+||+++|
T Consensus        54 ~~~~yDyI-VVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac  124 (623)
T KOG1238|consen   54 LDSSYDYI-VVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHAC  124 (623)
T ss_pred             cccCCCEE-EECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhh
Confidence            55689999 999999999999999999999999999999887778889777778899999999999999988

>PRK02106 choline dehydrogenase; Validated

Probab=99.33  E-value=2.8e-12  Score=106.76  Aligned_cols=69  Identities=41%  Similarity=0.605  Sum_probs=54.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC---CCcccchhhhhhc-cCCCccceeeeeeCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE---NEVTDVPSLAAWL-QLSKFDWQYKTEPTGKQ  106 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~---~~~~~iP~~~~~l-~~s~~dW~y~T~PQ~~~  106 (107)
                      ...|||| |||+|++|+++|.+|+++++.+|||||+|+..   .....+|...... ....++|+|.++||+++
T Consensus         3 ~~~~D~i-IVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~   75 (560)
T PRK02106          3 TMEYDYI-IIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHM   75 (560)
T ss_pred             CCcCcEE-EECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCC
Confidence            4569999 99999999999999999779999999999754   2345566544332 34678999999999864

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.29  E-value=5.8e-12  Score=95.75  Aligned_cols=65  Identities=38%  Similarity=0.573  Sum_probs=48.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhh-ccCCCccceeeeeeCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAW-LQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~-l~~s~~dW~y~T~PQ~~  105 (107)
                      |||| |||+|.+|+++|.+|++.++.+|||||+|+........+..... .....++|.|.+.|+..
T Consensus         1 yD~i-IVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (296)
T PF00732_consen    1 YDYI-IVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF   66 (296)
T ss_dssp             EEEE-EES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC
T ss_pred             CCEE-EECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc
Confidence            7999 99999999999999999767899999999876533322222222 23577999999998865

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01810 betA choline dehydrogenase

Probab=99.26  E-value=9e-12  Score=103.06  Aligned_cols=65  Identities=42%  Similarity=0.697  Sum_probs=51.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---Ccccchhhhhh-ccCCCccceeeeeeCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSLAAW-LQLSKFDWQYKTEPTGKQ  106 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~~~~-l~~s~~dW~y~T~PQ~~~  106 (107)
                      ||| |||+|++|+++|.||++++..+|||||+|+...   ....+|..+.. ...+.++|+|.++||+++
T Consensus         1 D~i-IVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   69 (532)
T TIGR01810         1 DYI-IIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHM   69 (532)
T ss_pred             CEE-EECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCC
Confidence            899 999999999999999997668999999997532   34556654433 235668999999999865

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.20  E-value=2.3e-11  Score=101.91  Aligned_cols=68  Identities=40%  Similarity=0.648  Sum_probs=58.2

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCC-cccchhhhhhccC-CCccceeeeeeCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENE-VTDVPSLAAWLQL-SKFDWQYKTEPTGK  105 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~-~~~iP~~~~~l~~-s~~dW~y~T~PQ~~  105 (107)
                      ...+|||| |||+|++|+++|.+|+ +++.+|+|||+|+.... .+++|..+..+.. +.++|.|.++|+++
T Consensus         4 ~~~~~D~v-IVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   73 (542)
T COG2303           4 MKMEYDYV-IVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH   73 (542)
T ss_pred             ccCCCCEE-EECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC
Confidence            34579999 9999999999999999 68999999999987653 6778887776654 48999999999874

>PLN02785 Protein HOTHEAD

Probab=99.02  E-value=4.6e-10  Score=95.11  Aligned_cols=65  Identities=29%  Similarity=0.335  Sum_probs=48.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhhccCCCccceeeeeeCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~l~~s~~dW~y~T~PQ~~  105 (107)
                      ...|||| |||+|+|||++|.+|++  +.+|+|||+|+.......+.... .+....+||.|.+.||.+
T Consensus        53 ~~~yD~I-IVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~  117 (587)
T PLN02785         53 DSAYDYI-VVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF  117 (587)
T ss_pred             cccCCEE-EECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc
Confidence            3469999 99999999999999998  58999999998542112222221 223456899999999864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.29  E-value=1e-06  Score=70.53  Aligned_cols=37  Identities=35%  Similarity=0.479  Sum_probs=33.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+||++ |||+|+||+++|++|++. +.+|+|+|++...
T Consensus         2 ~~~DVv-IVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVV-IVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEE-EECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            469999 999999999999999995 6999999998765

>PRK10015 oxidoreductase; Provisional

Probab=98.16  E-value=3.2e-06  Score=68.82  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=33.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+||+| |||+|+||+++|..|++ .+.+|+|||++...
T Consensus         4 ~~~DVi-IVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAI-VVGAGVAGSVAALVMAR-AGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            469999 99999999999999998 58999999998653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.15  E-value=4e-06  Score=66.35  Aligned_cols=42  Identities=31%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             ccCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +......+|++ |||||.+|+++|..|++ .+++|+|+|+.+..
T Consensus        12 ~~~~~~~~dV~-IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   53 (415)
T PRK07364         12 PSTRSLTYDVA-IVGGGIVGLTLAAALKD-SGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCccccCEE-EECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence            45555679999 99999999999999998 58999999998753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.15  E-value=3.4e-06  Score=68.43  Aligned_cols=37  Identities=32%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..||++ |||+|+||+++|..|++ .+.+|+|||++...
T Consensus         4 ~~~DVi-IVGaGpAG~~aA~~La~-~G~~V~llEr~~~~   40 (428)
T PRK10157          4 DIFDAI-IVGAGLAGSVAALVLAR-EGAQVLVIERGNSA   40 (428)
T ss_pred             ccCcEE-EECcCHHHHHHHHHHHh-CCCeEEEEEcCCCC
Confidence            469999 99999999999999998 58999999998653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.09  E-value=5.3e-06  Score=62.70  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=31.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ++|++ |||||++|+++|..|++ .+.+|+|||+.+...
T Consensus         1 ~~dV~-IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVA-IVGAGPAGLAAALALAR-AGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEE-EE--SHHHHHHHHHHHH-TTCEEEEEESSSSCC
T ss_pred             CceEE-EECCCHHHHHHHHHHHh-cccccccchhccccc
Confidence            37999 99999999999999998 589999999987653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.09  E-value=5.3e-06  Score=61.71  Aligned_cols=35  Identities=40%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ||++ |||+|++|+++|.+|++ .+.+|+|||++...
T Consensus         1 ~dv~-IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVV-VVGAGPAGASAAYRLAD-KGLRVLLLEKKSFP   35 (295)
T ss_pred             CCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            6999 99999999999999998 58999999998654

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.03  E-value=7.5e-06  Score=63.80  Aligned_cols=36  Identities=25%  Similarity=0.124  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++|++ |||||..|+++|..|++. +.+|+|||++..
T Consensus         2 ~~~dv~-IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVI-VIGLGSMGSAAGYYLARR-GLRVLGLDRFMP   37 (376)
T ss_pred             CcccEE-EECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            458999 999999999999999995 899999999753

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.00  E-value=9.2e-06  Score=61.43  Aligned_cols=33  Identities=39%  Similarity=0.443  Sum_probs=30.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         1 Dvv-IIGaGi~G~~~A~~La~-~G~~V~l~e~~~~   33 (358)
T PF01266_consen    1 DVV-IIGAGIAGLSTAYELAR-RGHSVTLLERGDI   33 (358)
T ss_dssp             EEE-EECTSHHHHHHHHHHHH-TTSEEEEEESSST
T ss_pred             CEE-EECcCHHHHHHHHHHHH-CCCeEEEEeeccc
Confidence            788 99999999999999999 6999999999943

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.99  E-value=1.3e-05  Score=66.02  Aligned_cols=38  Identities=29%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .....||++ |||||+||+++|..|++ .+.+|+|||+..
T Consensus        35 ~~~~~~DVi-IVGaGPAG~~aA~~LA~-~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVA-VIGGGPAGACAAETLAK-GGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence            445679999 99999999999999998 589999999875

>PRK09126 hypothetical protein; Provisional

Probab=97.97  E-value=1.1e-05  Score=63.42  Aligned_cols=36  Identities=31%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||++|+++|..|++ .+.+|+|+|+...
T Consensus         2 ~~~dvi-IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIV-VVGAGPAGLSFARSLAG-SGLKVTLIERQPL   37 (392)
T ss_pred             CcccEE-EECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence            358999 99999999999999998 5899999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.97  E-value=9.5e-06  Score=64.47  Aligned_cols=32  Identities=38%  Similarity=0.573  Sum_probs=30.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ||++ |||||+||+++|..|++ .+.+|+|||+.
T Consensus         1 yDVv-IVGaGpAG~~aA~~La~-~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVA-VIGGGPSGATAAETLAR-AGIETILLERA   32 (388)
T ss_pred             CeEE-EECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence            7999 99999999999999998 58999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.97  E-value=1.5e-05  Score=49.90  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=27.4

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |||+|.+|+++|.+|++. +.+|+|+|+.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCccc
Confidence            799999999999999985 8999999998764

...

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.96  E-value=1.2e-05  Score=63.32  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+.||++ |||||.+|+++|..|++ .+.+|+|||+..
T Consensus         3 ~~~~dVi-IvGgG~aGl~~A~~La~-~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIA-IVGGGMVGAALALGLAQ-HGFSVAVLEHAA   38 (391)
T ss_pred             cccccEE-EECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            4569999 99999999999999998 589999999975

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.95  E-value=1.6e-05  Score=63.14  Aligned_cols=41  Identities=27%  Similarity=0.191  Sum_probs=34.8

Q ss_pred             ccCCCCccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105          33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP   74 (107)
Q Consensus        33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~   74 (107)
                      .+.....+|++ |||||..|+++|..|++..+ .+|+|||++.
T Consensus        24 ~~~~~~~~dvv-IIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        24 SPEPKPTYDVI-IVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCCCCccCCEE-EECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            35566789999 99999999999999998435 5899999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.94  E-value=1.4e-05  Score=62.82  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=33.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..+|++ |||+|.+|+++|..|++ .+.+|+|||+.+.
T Consensus         5 ~~~~dVi-IVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIA-VIGGGPAGLAAAIALAR-AGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence            4568999 99999999999999998 5899999999754

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.94  E-value=1.2e-05  Score=62.64  Aligned_cols=34  Identities=29%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ||++ |||||.+|+++|+.|++. +.+|+|||++..
T Consensus         1 ~dvv-IIGaGi~G~s~A~~La~~-g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVI-VVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL   34 (380)
T ss_pred             CcEE-EECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            6899 999999999999999984 789999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.93  E-value=1.4e-05  Score=64.55  Aligned_cols=35  Identities=34%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +.||++ |||+|++|+.+|.+|++ .+.+|+|||+++
T Consensus         2 ~~yDvv-VIGgGpaGl~aA~~la~-~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAV-IIGFGKAGKTLAVTLAK-AGWRVALIEQSN   36 (441)
T ss_pred             CcCCEE-EECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence            469999 99999999999999998 589999999874

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.92  E-value=1.5e-05  Score=61.22  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|++|+++|.+|++ .+.+|+|||++..
T Consensus        20 ~~~DVv-IVGgGpAGL~aA~~la~-~G~~V~vlEk~~~   55 (254)
T TIGR00292        20 AESDVI-IVGAGPSGLTAAYYLAK-NGLKVCVLERSLA   55 (254)
T ss_pred             cCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            368999 99999999999999998 5899999999864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.92  E-value=1.6e-05  Score=61.04  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|+||+++|.+|++ .+.+|+|||+...
T Consensus        24 ~~~DVv-IVGgGpAGl~AA~~la~-~G~~V~liEk~~~   59 (257)
T PRK04176         24 LEVDVA-IVGAGPSGLTAAYYLAK-AGLKVAVFERKLS   59 (257)
T ss_pred             ccCCEE-EECccHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            358999 99999999999999998 6999999998754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.91  E-value=1.7e-05  Score=62.21  Aligned_cols=36  Identities=31%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+|++ |||||++|+++|..|++ .+.+|+|+|++...
T Consensus         5 ~~dv~-IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVV-VVGGGLVGASLALALAQ-SGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence            57999 99999999999999998 58999999998653

>PLN02463 lycopene beta cyclase

Probab=97.91  E-value=2.5e-05  Score=64.51  Aligned_cols=38  Identities=37%  Similarity=0.465  Sum_probs=33.4

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....||++ |||||+||+++|..|++ .+.+|+|||+.+.
T Consensus        25 ~~~~~DVv-IVGaGpAGLalA~~La~-~Gl~V~liE~~~~   62 (447)
T PLN02463         25 KSRVVDLV-VVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL   62 (447)
T ss_pred             cccCceEE-EECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence            44569999 99999999999999998 5999999999753

>PRK08013 oxidoreductase; Provisional

Probab=97.91  E-value=1.7e-05  Score=63.32  Aligned_cols=36  Identities=31%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 ~~~dV~-IvGaGpaGl~~A~~La~-~G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVV-IAGGGMVGLAVACGLQG-SGLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEE-EECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence            358999 99999999999999998 5899999999765

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.91  E-value=1.3e-05  Score=63.87  Aligned_cols=35  Identities=37%  Similarity=0.588  Sum_probs=30.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~   76 (107)
                      |++ |||+|+||+.+|.+|.+ .++.+|+|||+....
T Consensus         1 Dvi-IvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVI-IVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEE-EECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            789 99999999999999932 368999999997654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.90  E-value=1.8e-05  Score=63.97  Aligned_cols=35  Identities=31%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+||++ |||+|+||+.+|.+|++ .+.+|+|||++.
T Consensus         2 ~~~dvv-VIG~GpaG~~aA~~l~~-~g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLI-VIGFGKAGKTLAAKLAS-AGKKVALVEESK   36 (438)
T ss_pred             CccCEE-EECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence            469999 99999999999999998 589999999975

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.89  E-value=1.4e-05  Score=61.52  Aligned_cols=36  Identities=25%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|++|+++|+.|++. ++||+++|+...
T Consensus        16 ~~~DV~-IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVA-IVGAGPAGLTAAYYLAKA-GLKVAVIERKLS   51 (230)
T ss_dssp             TEESEE-EE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred             ccCCEE-EECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence            358999 999999999999999995 999999998654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.89  E-value=1.9e-05  Score=65.70  Aligned_cols=37  Identities=32%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...||++ |||||..|+.+|..|++ .+++|+|||+++.
T Consensus         4 ~~~~DVv-IIGGGi~G~~~A~~la~-rGl~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLL-VIGGGINGAGIARDAAG-RGLSVLLCEQDDL   40 (508)
T ss_pred             CCcCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            3469999 99999999999999998 5999999999754

>PRK07045 putative monooxygenase; Reviewed

Probab=97.88  E-value=2e-05  Score=62.20  Aligned_cols=38  Identities=29%  Similarity=0.245  Sum_probs=33.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +..+|++ |||||++|+++|..|++ .+++|+|+|+.+..
T Consensus         3 ~~~~~V~-IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVL-INGSGIAGVALAHLLGA-RGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEE-EECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence            3568999 99999999999999998 58999999998754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.88  E-value=1.6e-05  Score=65.07  Aligned_cols=35  Identities=34%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ||++ |||||+||+++|..+++ .+.+|+|+|++...
T Consensus         1 ydvi-IIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~   35 (409)
T PF03486_consen    1 YDVI-IIGGGAAGLMAAITAAE-KGARVLVLERNKRV   35 (409)
T ss_dssp             -SEE-EE--SHHHHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred             CcEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCccc
Confidence            7999 99999999999999988 59999999998654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.88  E-value=2e-05  Score=65.16  Aligned_cols=37  Identities=30%  Similarity=0.269  Sum_probs=33.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+||++ |||||..|+.+|..|++ .+.+|+|||+++.
T Consensus         4 ~~~~DVv-IIGGGi~G~~~A~~la~-rG~~V~LlEk~d~   40 (502)
T PRK13369          4 PETYDLF-VIGGGINGAGIARDAAG-RGLKVLLCEKDDL   40 (502)
T ss_pred             CcccCEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            4569999 99999999999999998 4899999999854

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.87  E-value=2.1e-05  Score=62.12  Aligned_cols=37  Identities=35%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||||++|+++|..|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dV~-IvGaG~aGl~~A~~La~-~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAV-IVGGGVVGAACALALAD-AGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence            3468999 99999999999999998 5899999999753

>PLN02697 lycopene epsilon cyclase

Probab=97.87  E-value=3e-05  Score=65.51  Aligned_cols=36  Identities=22%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...||++ |||+|+||+++|.+|++ .+++|+|||++.
T Consensus       106 ~~~~DVv-IVGaGPAGLalA~~Lak-~Gl~V~LIe~~~  141 (529)
T PLN02697        106 DGTLDLV-VIGCGPAGLALAAESAK-LGLNVGLIGPDL  141 (529)
T ss_pred             cCcccEE-EECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence            3469999 99999999999999998 599999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.87  E-value=2.1e-05  Score=63.84  Aligned_cols=35  Identities=46%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+++|.++++ .+.+|+|||+..
T Consensus         3 ~~~DVv-VVG~G~aGl~AA~~aa~-~G~~V~vlEk~~   37 (466)
T PRK08274          3 SMVDVL-VIGGGNAALCAALAARE-AGASVLLLEAAP   37 (466)
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            458999 99999999999999998 589999999975

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.87  E-value=2.2e-05  Score=62.24  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||||++|+++|..|++ .+.+|+|+|+.+
T Consensus         3 ~~dv~-IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIA-VVGGGMVGAATALGFAK-QGRSVAVIEGGE   36 (384)
T ss_pred             cccEE-EECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            48999 99999999999999998 589999999864

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.86  E-value=2e-05  Score=62.68  Aligned_cols=33  Identities=45%  Similarity=0.635  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|.||+++|.++++ .+.+|+|||++..
T Consensus         1 DVv-VIG~G~AGl~AA~~Aae-~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVV-VIGGGLAGLAAAIEAAE-AGAKVLLVEKGPR   33 (417)
T ss_dssp             SEE-EE-SSHHHHHHHHHHHH-TTT-EEEEESSSG
T ss_pred             CEE-EECCCHHHHHHHHHHhh-hcCeEEEEEeecc
Confidence            788 99999999999999999 5889999999876

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.86  E-value=1.9e-05  Score=62.13  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~   75 (107)
                      .||++ |||||++|+++|..|++.. +++|+|||+.+.
T Consensus         1 ~~dv~-IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVV-IAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEE-EECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            47999 9999999999999999852 599999999764

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.85  E-value=2.2e-05  Score=61.52  Aligned_cols=35  Identities=40%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag   73 (107)
                      ..+|++ |||+|++|+++|..|++.  .+.+|+|+|+.
T Consensus         2 ~~~dv~-IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVI-IVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEE-EECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            468999 999999999999999873  38999999994

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.84  E-value=2.4e-05  Score=62.20  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +|++ |||+|..|+++|.+|++. +.+|+|||++.
T Consensus         2 ~~vv-IIGaG~~G~~~A~~La~~-g~~V~vle~~~   34 (410)
T PRK12409          2 SHIA-VIGAGITGVTTAYALAQR-GYQVTVFDRHR   34 (410)
T ss_pred             CEEE-EECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            6999 999999999999999984 89999999986

>PRK06370 mercuric reductase; Validated

Probab=97.83  E-value=2.8e-05  Score=63.28  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +.+||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus         3 ~~~~Dvv-VIG~GpaG~~aA~~aa~-~G~~v~lie~~~~   39 (463)
T PRK06370          3 AQRYDAI-VIGAGQAGPPLAARAAG-LGMKVALIERGLL   39 (463)
T ss_pred             CccccEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCcc
Confidence            4569999 99999999999999998 5899999998643

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.83  E-value=2.5e-05  Score=64.34  Aligned_cols=36  Identities=36%  Similarity=0.546  Sum_probs=33.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +.+|++ |||||+||+++|..+++ .+.+|+|||+++.
T Consensus         2 ~~~dvi-IIGgGpAGlMaA~~aa~-~G~~V~lid~~~k   37 (408)
T COG2081           2 ERFDVI-IIGGGPAGLMAAISAAK-AGRRVLLIDKGPK   37 (408)
T ss_pred             CcceEE-EECCCHHHHHHHHHHhh-cCCEEEEEecCcc
Confidence            568999 99999999999999998 6999999999864

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.82  E-value=2.6e-05  Score=61.30  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|+||+.+|.+|++ .+.+|+|||+.+.
T Consensus         1 Dvi-IiGaG~AGl~~A~~la~-~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLA-VIGGGPAGLAIALELAR-PGLRVQLIEPHPP   33 (388)
T ss_pred             CEE-EECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence            788 99999999999999987 5999999998753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.82  E-value=2.6e-05  Score=61.93  Aligned_cols=35  Identities=31%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      ++|++ |||||.+|+++|++|++. ++.+|+|||++.
T Consensus         2 ~~dVv-IIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          2 MYDFV-IIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             CccEE-EECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            48999 999999999999999983 489999999975

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.82  E-value=2.5e-05  Score=64.71  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|+| |||+|..|+++|..|++ .+++|+|+|+...
T Consensus         2 ~~~dvv-VIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~   37 (487)
T COG1233           2 PMYDVV-VIGAGLNGLAAAALLAR-AGLKVTVLEKNDR   37 (487)
T ss_pred             CCccEE-EECCChhHHHHHHHHHh-CCCEEEEEEecCC
Confidence            468999 99999999999999998 5999999997543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.82  E-value=2.6e-05  Score=61.92  Aligned_cols=34  Identities=35%  Similarity=0.593  Sum_probs=31.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++|++ |||||++|+++|..|++ .+.+|+|||+.+
T Consensus         2 ~~dV~-IVGaG~aGl~~A~~L~~-~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLL-IVGAGMVGSALALALQG-SGLEVLLLDGGP   35 (405)
T ss_pred             CccEE-EECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            47999 99999999999999988 589999999875

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.82  E-value=3.1e-05  Score=62.72  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~yDvv-VIGaGpaG~~aA~~la~-~G~~v~liE~~~   38 (461)
T PRK05249          3 MYDYDLV-VIGSGPAGEGAAMQAAK-LGKRVAVIERYR   38 (461)
T ss_pred             CccccEE-EECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence            4569999 99999999999999998 589999999863

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.81  E-value=2.9e-05  Score=60.61  Aligned_cols=34  Identities=24%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.+|+++|.+|++. +.+|+|||++..
T Consensus         1 ~dv~-IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLI-IVGAGILGLAHAYAAARR-GLSVTVIERSSR   34 (365)
T ss_pred             CCEE-EECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            5899 999999999999999984 899999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06116 glutathione reductase; Validated

Probab=97.81  E-value=3e-05  Score=62.79  Aligned_cols=35  Identities=34%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~Dvv-VIG~GpaG~~aA~~~a~-~G~~V~liE~~~   37 (450)
T PRK06116          3 KDYDLI-VIGGGSGGIASANRAAM-YGAKVALIEAKR   37 (450)
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence            369999 99999999999999998 589999999863

>PRK06185 hypothetical protein; Provisional

Probab=97.81  E-value=3e-05  Score=61.35  Aligned_cols=36  Identities=33%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|||+.+.
T Consensus         5 ~~~dV~-IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCC-IVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            468999 99999999999999998 5899999999753

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.80  E-value=2.8e-05  Score=62.52  Aligned_cols=33  Identities=39%  Similarity=0.544  Sum_probs=30.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +|++ |||+|+||+++|..|++ .+.+|+|||+..
T Consensus         1 ~~Vv-IVGaGPAG~~aA~~la~-~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVA-VVGGGPAGASAAETLAS-AGIQTFLLERKP   33 (398)
T ss_pred             CeEE-EECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence            5889 99999999999999998 589999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.79  E-value=3.4e-05  Score=63.23  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .+||++ |||+|+||+.+|.++++ .+.+|+|||+
T Consensus         2 ~~~Dvv-VIG~GpaG~~AA~~aa~-~G~~V~liE~   34 (466)
T PRK06115          2 ASYDVV-IIGGGPGGYNAAIRAGQ-LGLKVACVEG   34 (466)
T ss_pred             CcccEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            359999 99999999999999998 5899999997

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.78  E-value=3.4e-05  Score=62.93  Aligned_cols=38  Identities=29%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..++|++ |||+|.+|+++|.+|++. ++.+|+|||++..
T Consensus        22 ~~~~DVv-IIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVC-IVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEE-EECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4468999 999999999999999984 4899999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.78  E-value=3.7e-05  Score=62.25  Aligned_cols=35  Identities=37%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|..+|.+|++ .+.+|+|||++.
T Consensus         2 ~~yDvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~   36 (460)
T PRK06292          2 EKYDVI-VIGAGPAGYVAARRAAK-LGKKVALIEKGP   36 (460)
T ss_pred             CcccEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence            459999 99999999999999998 589999999843

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.78  E-value=3.4e-05  Score=59.91  Aligned_cols=34  Identities=35%  Similarity=0.574  Sum_probs=30.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |++ |||+|++|+++|..|++ .+.+|+|+|+....
T Consensus         1 dVi-IvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIV-IVGGGMVGLALALALAR-SGLKIALIEATPAE   34 (385)
T ss_pred             CEE-EECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence            678 99999999999999998 58999999998753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.77  E-value=3.4e-05  Score=62.59  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||+|.+|+++|..+++ .+.+|||||+++.
T Consensus         1 ~fd~l-IVGaGlsG~V~A~~a~~-~gk~VLIvekR~H   35 (374)
T COG0562           1 MFDYL-IVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNH   35 (374)
T ss_pred             CCcEE-EECCchhHHHHHHHHHH-cCCEEEEEecccc
Confidence            48999 99999999999997777 5999999999764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.76  E-value=3.5e-05  Score=63.69  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ++.||+| |||+|.+|+++|..|++ .|.+|++||+....
T Consensus         2 ~~~~DVi-ViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVI-VCGTGLKECILSGLLSV-NGKKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEE-EECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence            4569999 99999999999999998 59999999997654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.76  E-value=3.8e-05  Score=62.45  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         1 ~~Dvv-IIGaG~aGlsaA~~La~-~G~~V~viEk~~~   35 (377)
T TIGR00031         1 MFDYI-IVGAGLSGIVLANILAQ-LNKRVLVVEKRNH   35 (377)
T ss_pred             CCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            37999 99999999999999997 5899999999653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.76  E-value=4.2e-05  Score=64.15  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||||..|+.+|+.|++ .+.+|+|||++..
T Consensus         5 ~~~DVv-IIGGGi~G~~iA~~La~-rG~~V~LlEk~d~   40 (546)
T PRK11101          5 QETDVI-IIGGGATGAGIARDCAL-RGLRCILVERHDI   40 (546)
T ss_pred             ccccEE-EECcCHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence            358999 99999999999999998 5899999999753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.76  E-value=3.5e-05  Score=62.96  Aligned_cols=35  Identities=37%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus         2 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~liE~~~~   36 (450)
T TIGR01421         2 HYDYL-VIGGGSGGIASARRAAE-HGAKALLVEAKKL   36 (450)
T ss_pred             CCCEE-EECcCHHHHHHHHHHHH-CCCcEEEeccccc
Confidence            58999 99999999999999998 5899999998643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.75  E-value=4.1e-05  Score=57.28  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ||++ |||+|.+|+.+|..|.+ .+.+|+|||++.
T Consensus         1 ~dvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVI-IIGAGPAGLTAAIYAAR-ANLKTLIIEGME   33 (300)
T ss_pred             CcEE-EECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence            6899 99999999999999988 589999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK11445 putative oxidoreductase; Provisional

Probab=97.75  E-value=3.5e-05  Score=60.63  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||+|+||+++|..|++ . .+|+|||+.+.
T Consensus         1 ~~dV~-IvGaGpaGl~~A~~La~-~-~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVA-IIGLGPAGSALARLLAG-K-MKVIAIDKKHQ   34 (351)
T ss_pred             CceEE-EECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence            47999 99999999999999998 4 89999998763

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.74  E-value=3.8e-05  Score=62.43  Aligned_cols=34  Identities=38%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |++ |||||++|+++|..+++ .+.+|+|||+.+.-
T Consensus         1 DVV-VvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVV-VVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEE-EE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred             CEE-EECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence            788 99999999999999998 59999999998753

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.73  E-value=4.2e-05  Score=61.25  Aligned_cols=33  Identities=36%  Similarity=0.651  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      |++ |||||.||+.+|.+|++. ++.+|+|||+++
T Consensus         1 Dvi-IvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCI-IVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEE-EECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            788 999999999999999973 589999999976

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.73  E-value=4.5e-05  Score=63.65  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=32.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      ..++|++ |||||..|+++|++|++. ++.+|+|||+..
T Consensus         3 ~~~~DVv-IIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          3 ESKTDVV-LIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             CccceEE-EECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            3468999 999999999999999984 688999999875

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.73  E-value=4.8e-05  Score=60.59  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..+|++ |||||++|+++|..|++ .+.+|.|||+.
T Consensus         3 ~~~dV~-IvGaG~~Gl~~A~~L~~-~G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVA-IIGGGMVGLALAAALKE-SDLRIAVIEGQ   36 (405)
T ss_pred             CcCCEE-EECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            358999 99999999999999988 58999999986

>PRK07121 hypothetical protein; Validated

Probab=97.72  E-value=6.1e-05  Score=61.95  Aligned_cols=36  Identities=33%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+++|.++++ .+.+|+|||+...
T Consensus        19 ~~~DVv-VVGaG~AGl~AA~~aae-~G~~VillEK~~~   54 (492)
T PRK07121         19 DEADVV-VVGFGAAGACAAIEAAA-AGARVLVLERAAG   54 (492)
T ss_pred             CccCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            468999 99999999999999998 5899999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.72  E-value=4e-05  Score=62.27  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=31.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .||++ |||+|+||..+|.++++ .+.+|+|||++.
T Consensus         2 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~lie~~~   35 (446)
T TIGR01424         2 DYDLF-VIGAGSGGVRAARLAAN-HGAKVAIAEEPR   35 (446)
T ss_pred             cccEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCc
Confidence            58999 99999999999999998 589999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.72  E-value=4.3e-05  Score=63.50  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      +|++ |||||.+|+++|.+|++. ++.+|+|+|+..
T Consensus         1 ~DVv-IIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         1 TDVV-LIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             CcEE-EECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            5899 999999999999999984 689999999965

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.72  E-value=5.8e-05  Score=58.80  Aligned_cols=37  Identities=35%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..++|++ |||+|.+|+++|+.|++. +.+|++||++..
T Consensus         2 ~~~~~vv-VIGgGi~Gls~A~~La~~-G~~V~vie~~~~   38 (387)
T COG0665           2 SMKMDVV-IIGGGIVGLSAAYYLAER-GADVTVLEAGEA   38 (387)
T ss_pred             CCcceEE-EECCcHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence            3468999 999999999999999994 779999999764

>PRK07208 hypothetical protein; Provisional

Probab=97.71  E-value=5.4e-05  Score=61.40  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +...|++ |||||.+|+++|.+|.+ .+.+|+|+|+.+.
T Consensus         2 ~~~~~vv-IiGaGisGL~aA~~L~~-~g~~v~v~E~~~~   38 (479)
T PRK07208          2 TNKKSVV-IIGAGPAGLTAAYELLK-RGYPVTVLEADPV   38 (479)
T ss_pred             CCCCcEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            4567999 99999999999999998 4899999999654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.70  E-value=5e-05  Score=59.40  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~~   76 (107)
                      |++ |||||++|+++|..|++ .+ .+|+|+|+....
T Consensus         1 dv~-IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVI-IVGGGLVGLSLALALSR-LGKIKIALIEANSPS   35 (382)
T ss_pred             CEE-EECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence            678 99999999999999998 57 999999998654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=5.6e-05  Score=61.79  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|++|+.+|.+|++ .+.+|+|||++..
T Consensus         3 ~~ydvv-VIG~GpaG~~aA~~aa~-~G~~v~lie~~~~   38 (472)
T PRK05976          3 KEYDLV-IIGGGPGGYVAAIRAGQ-LGLKTALVEKGKL   38 (472)
T ss_pred             ccccEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccCC
Confidence            469999 99999999999999998 5899999998643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=5.6e-05  Score=61.68  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+||++ |||+|++|..+|.++++ .+.+|+|||++.
T Consensus         3 ~~~Dvv-IIG~GpaG~~AA~~aa~-~G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVV-VLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY   37 (466)
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            359999 99999999999999998 589999999864

>PRK06996 hypothetical protein; Provisional

Probab=97.69  E-value=5.8e-05  Score=60.17  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=34.2

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD   75 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~   75 (107)
                      ++....+|++ |||||++|+++|..|++..   +++|+|||+...
T Consensus         6 ~~~~~~~dv~-IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          6 SMAAPDFDIA-IVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             hccCCCCCEE-EECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4556678999 9999999999999999843   368999999753

>PLN02268 probable polyamine oxidase

Probab=97.69  E-value=5.7e-05  Score=60.56  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +++ |||+|.+|+++|++|.+ .+.+|+|+|+.+.-
T Consensus         2 ~Vv-VIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~   35 (435)
T PLN02268          2 SVI-VIGGGIAGIAAARALHD-ASFKVTLLESRDRI   35 (435)
T ss_pred             CEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            578 99999999999999998 58999999997643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.69  E-value=5.2e-05  Score=61.55  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|+||+.+|.++++ .+.+|+|||++.
T Consensus         3 ~~yDvv-VIGaGpaG~~aA~~aa~-~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVI-VIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK   37 (462)
T ss_pred             ccccEE-EECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence            459999 99999999999999998 489999999865

>PRK06184 hypothetical protein; Provisional

Probab=97.69  E-value=6.4e-05  Score=61.80  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +.+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         2 ~~~dVl-IVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVL-IVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            458999 99999999999999998 58999999997543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.68  E-value=4.2e-05  Score=59.47  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..|++ |||+|++|+++|++|++ .+++|+|+|+.-.
T Consensus        30 esDVi-IVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls   64 (262)
T COG1635          30 ESDVI-IVGAGPSGLTAAYYLAK-AGLKVAIFERKLS   64 (262)
T ss_pred             hccEE-EECcCcchHHHHHHHHh-CCceEEEEEeecc
Confidence            46999 99999999999999999 5999999999644

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.68  E-value=5.4e-05  Score=61.24  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         1 ~yDvv-VIG~G~aGl~aA~~la~-~G~~v~lie~~~   34 (461)
T TIGR01350         1 AYDVV-VIGGGPGGYVAAIRAAQ-LGLKVALVEKEY   34 (461)
T ss_pred             CccEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            48999 99999999999999998 589999999843

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.68  E-value=8.4e-05  Score=62.27  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      ....++|++ |||||..|+++|+.|++. +..+|+|||+..
T Consensus        41 ~~~~~~DVv-IIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         41 LGSDVYDVV-IVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             ccCCcccEE-EECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            344579999 999999999999999984 457999999974

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.68  E-value=5.7e-05  Score=61.16  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~   74 (107)
                      ||++ |||||++|+++|..|++.   .+.+|+|||+.+
T Consensus         1 ~DV~-IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVV-IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEE-EECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            6899 999999999999999973   489999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.68  E-value=6.6e-05  Score=62.34  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=33.4

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...++|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus        58 ~~~~~DVv-VVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~   95 (506)
T PRK06481         58 LKDKYDIV-IVGAGGAGMSAAIEAKD-AGMNPVILEKMPV   95 (506)
T ss_pred             ccccCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            34578999 99999999999999998 5899999999764

>KOG0029|consensus

Probab=97.67  E-value=6.3e-05  Score=63.24  Aligned_cols=39  Identities=28%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .....++| |||||.||+++|..|.+ .+.+|+|+||.+.-
T Consensus        12 ~~~~~~VI-VIGAGiaGLsAArqL~~-~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   12 AGKKKKVI-VIGAGLAGLSAARQLQD-FGFDVLVLEARDRV   50 (501)
T ss_pred             ccCCCcEE-EECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence            34567999 99999999999999998 59999999997643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.67  E-value=6.7e-05  Score=61.62  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+||++ |||+|++|..+|.++++ .+.+|+|||+.+
T Consensus         3 ~~~Dvv-VIG~GpaG~~aA~~aa~-~G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVV-VLGAGPAGYSAAFRAAD-LGLETVCVERYS   37 (471)
T ss_pred             ccceEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            469999 99999999999999998 589999999863

>PLN02985 squalene monooxygenase

Probab=97.66  E-value=7.5e-05  Score=62.51  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+|++ |||+|.+|+++|..|++ .+.+|+|||+...
T Consensus        40 ~~~~~DVi-IVGAG~aGlalA~aLa~-~G~~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVI-IVGAGVGGSALAYALAK-DGRRVHVIERDLR   77 (514)
T ss_pred             cCCCceEE-EECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence            45568999 99999999999999998 5899999999753

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.66  E-value=6.2e-05  Score=59.54  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||||++|+++|..|++ .+++|+|+|+.+
T Consensus         1 ~~dV~-IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTV-ILGCGLSGMLTALSFAQ-KGIKTTIFESKS   34 (374)
T ss_pred             CccEE-EECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence            37899 99999999999999988 589999999864

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.66  E-value=6.7e-05  Score=64.20  Aligned_cols=38  Identities=29%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...||++ |||||..|+.+|..|++ .+++|+|||+++..
T Consensus        69 ~~~~DVv-VIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d~a  106 (627)
T PLN02464         69 AEPLDVL-VVGGGATGAGVALDAAT-RGLRVGLVEREDFS  106 (627)
T ss_pred             CCccCEE-EECCCHHHHHHHHHHHh-CCCEEEEEeccccC
Confidence            4569999 99999999999999998 58999999998543

>TIGR02053 MerA mercuric reductase

Probab=97.64  E-value=6.9e-05  Score=60.93  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus         1 yDvv-VIGaGpaG~~aA~~aa~-~g~~v~lie~~~~   34 (463)
T TIGR02053         1 YDLV-IIGSGAAAFAAAIKAAE-LGASVAMVERGPL   34 (463)
T ss_pred             CCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCcc
Confidence            7999 99999999999999998 5899999998653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK08244 hypothetical protein; Provisional

Probab=97.64  E-value=7.9e-05  Score=61.03  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         2 ~~dVl-IVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVI-IIGGGPVGLMLASELAL-AGVKTCVIERLKET   37 (493)
T ss_pred             CCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            47999 99999999999999998 59999999997654

>TIGR02730 carot_isom carotene isomerase

Probab=97.64  E-value=6.9e-05  Score=61.55  Aligned_cols=35  Identities=31%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ||++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus         1 ~dvv-ViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAI-VIGSGIGGLVTATQLAV-KGAKVLVLERYLIP   35 (493)
T ss_pred             CcEE-EECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence            6899 99999999999999998 59999999997653

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06847 hypothetical protein; Provisional

Probab=97.63  E-value=8.9e-05  Score=57.84  Aligned_cols=35  Identities=31%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..|++ |||||.+|+++|..|++ .+.+|+|+|+...
T Consensus         4 ~~~V~-IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVL-IVGGGIGGLSAAIALRR-AGIAVDLVEIDPE   38 (375)
T ss_pred             cceEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            46899 99999999999999998 5899999998764

>PRK07236 hypothetical protein; Provisional

Probab=97.63  E-value=8.2e-05  Score=58.89  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||||.+|+++|..|++ .+.+|+|+|+.+.
T Consensus         5 ~~~~Vi-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAV-VIGGSLGGLFAALLLRR-AGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            357899 99999999999999998 5899999999763

>PRK06753 hypothetical protein; Provisional

Probab=97.63  E-value=7.7e-05  Score=58.26  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +++ |||||.+|+++|..|++ .+.+|.|+|+.+..
T Consensus         2 ~V~-IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIA-IIGAGIGGLTAAALLQE-QGHEVKVFEKNESV   35 (373)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence            688 99999999999999998 58999999998753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.63  E-value=7.9e-05  Score=62.58  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||||+||+.+|..|++ .+.+|+|||++..
T Consensus         3 ~~yDVv-IIGgGpAGL~AA~~lar-~g~~V~liE~~~~   38 (555)
T TIGR03143         3 EIYDLI-IIGGGPAGLSAGIYAGR-AKLDTLIIEKDDF   38 (555)
T ss_pred             CcCcEE-EECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            359999 99999999999999998 5899999998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.63  E-value=7.4e-05  Score=60.06  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~   75 (107)
                      .|++ |||||.+|+++|.+|.+..   +.+|+|+|+.+.
T Consensus         3 ~~v~-VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r   40 (462)
T TIGR00562         3 KHVV-IIGGGISGLCAAYYLEKEIPELPVELTLVEASDR   40 (462)
T ss_pred             ceEE-EECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence            5889 9999999999999999842   799999999764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.62  E-value=8.2e-05  Score=63.51  Aligned_cols=39  Identities=21%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus        26 ~~~~~DVl-VIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~   64 (617)
T PTZ00139         26 IDHTYDAV-VVGAGGAGLRAALGLVE-LGYKTACISKLFPT   64 (617)
T ss_pred             cccccCEE-EECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence            33568999 99999999999999988 58999999998653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.62  E-value=7.5e-05  Score=59.49  Aligned_cols=33  Identities=36%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .+|++ |||||.+|+++|..|++ .+++|.|||+.
T Consensus         2 ~~dV~-IvGaG~aGl~lA~~L~~-~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVA-IVGAGPAGLALALALAR-AGLDVTLLERA   34 (387)
T ss_pred             CCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence            47999 99999999999999998 58999999998

>PRK07190 hypothetical protein; Provisional

Probab=97.62  E-value=9.1e-05  Score=61.44  Aligned_cols=38  Identities=13%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         3 ~~~~dVl-IVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVV-IIGAGPVGLMCAYLGQL-CGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEE-EECCCHHHHHHHHHHHH-cCCCEEEEeCCCcc
Confidence            3458999 99999999999999987 58999999998643

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.62  E-value=7.9e-05  Score=59.28  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~   75 (107)
                      +++ |||||.+|+++|.+|.+.+ +.+|+|+|+.+.
T Consensus         2 ~v~-IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~   36 (451)
T PRK11883          2 KVA-IIGGGITGLSAAYRLHKKGPDADITLLEASDR   36 (451)
T ss_pred             eEE-EECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence            467 9999999999999999852 389999999653

>PLN02661 Putative thiazole synthesis

Probab=97.62  E-value=7.4e-05  Score=60.71  Aligned_cols=36  Identities=31%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|..|++.++.+|+|||++..
T Consensus        92 ~~DVl-IVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         92 DTDVV-IVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             cCCEE-EECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            57999 9999999999999999766899999999754

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.61  E-value=8.9e-05  Score=59.21  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||||++|+++|..|++ .+++|+|||+.+.
T Consensus         2 ~~dV~-IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVA-IIGAGPSGLLLGQLLHK-AGIDNVILERQSR   36 (390)
T ss_pred             CceEE-EECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            37899 99999999999999998 5999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.61  E-value=8.8e-05  Score=58.91  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus         2 ~~dV~-IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVA-IIGAGPAGLLLGQLLHL-AGIDSVVLERRSR   36 (392)
T ss_pred             cceEE-EECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence            47899 99999999999999998 5999999999874

>PLN02576 protoporphyrinogen oxidase

Probab=97.60  E-value=9.6e-05  Score=60.23  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|++|.+..+.+|.|+|+.+.
T Consensus        11 ~~~~v~-IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r   47 (496)
T PLN02576         11 SSKDVA-VVGAGVSGLAAAYALASKHGVNVLVTEARDR   47 (496)
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence            347899 9999999999999999832789999999764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.60  E-value=8.5e-05  Score=61.79  Aligned_cols=35  Identities=29%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++|++ |||+| +|+++|.++++ .+.+|+|||+...
T Consensus         6 ~~~DVv-VVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVL-VAGSG-GGVAGAYTAAR-EGLSVALVEATDK   40 (513)
T ss_pred             CccCEE-EECch-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence            468999 99999 99999999998 5899999998754

>PRK14694 putative mercuric reductase; Provisional

Probab=97.59  E-value=0.0001  Score=60.31  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...||++ |||+|++|..+|.+|++ .+.+|+|||++..
T Consensus         4 ~~~~dvi-VIGaG~aG~~aA~~l~~-~g~~v~lie~~~~   40 (468)
T PRK14694          4 DNNLHIA-VIGSGGSAMAAALKATE-RGARVTLIERGTI   40 (468)
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEEcccc
Confidence            3579999 99999999999999998 4889999998753

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.59  E-value=9.6e-05  Score=62.70  Aligned_cols=40  Identities=28%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++....+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         7 ~~~~~~~DVl-VIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~   46 (591)
T PRK07057          7 SLPRRKFDVV-IVGAGGSGMRASLQLAR-AGLSVAVLSKVFP   46 (591)
T ss_pred             CcccccCCEE-EECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            4445578999 99999999999999988 5889999999753

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.59  E-value=0.0001  Score=57.97  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..|++ |||||.+|+++|..|++ .+.+|.|+|+.+.
T Consensus         4 ~~~V~-IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVL-IVGGGIGGLAAALALAR-QGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEE-EECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence            47899 99999999999999998 5899999999764

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.58  E-value=8.6e-05  Score=64.02  Aligned_cols=35  Identities=29%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||||.||+.+|..+++ .+.+|++||...
T Consensus         3 ~~yDVI-VVGGGpAG~eAA~~aAR-~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVI-VVGGGHAGCEAALAAAR-MGAKTLLLTHNL   37 (618)
T ss_pred             ccceEE-EECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence            469999 99999999999999998 599999999874

>PRK06126 hypothetical protein; Provisional

Probab=97.58  E-value=0.00012  Score=60.75  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+|++ |||||++|+++|..|++ .+.+|+|||+.+.
T Consensus         4 ~~~~~~Vl-IVGaGpaGL~~Al~La~-~G~~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVL-IVGGGPVGLALALDLGR-RGVDSILVERKDG   41 (545)
T ss_pred             CCccCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            34568999 99999999999999998 5899999998754

>PRK07588 hypothetical protein; Provisional

Probab=97.58  E-value=0.0001  Score=58.29  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |++ |||||.+|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 ~V~-IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVA-ISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL   35 (391)
T ss_pred             eEE-EECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence            688 99999999999999998 58999999998643

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.58  E-value=0.00011  Score=61.57  Aligned_cols=35  Identities=37%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.||+++|..+++ .+.+|+|||++.
T Consensus         3 ~~~DVv-VVG~G~AGl~AAl~Aa~-~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVI-VVGAGLAGLVAAAELAD-AGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            468999 99999999999999988 589999999987

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.58  E-value=9.3e-05  Score=59.62  Aligned_cols=33  Identities=36%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~   75 (107)
                      |++ |||+|.+|+++|.++++ .+ .+|+|||+.+.
T Consensus         1 DVv-VVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~   34 (439)
T TIGR01813         1 DVV-VVGSGFAGLSAALSAKK-AGAANVVLLEKMPV   34 (439)
T ss_pred             CEE-EECCCHHHHHHHHHHHH-cCCccEEEEecCCC
Confidence            788 99999999999999998 47 89999999764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.56  E-value=0.00012  Score=62.22  Aligned_cols=37  Identities=35%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ....+|++ |||||.+|+++|..|++ .+.+|+|+|+..
T Consensus        30 ~~~~~dVi-IVGaGiaGlalA~aLar-~G~~V~VlEr~~   66 (567)
T PTZ00367         30 TNYDYDVI-IVGGSIAGPVLAKALSK-QGRKVLMLERDL   66 (567)
T ss_pred             cccCccEE-EECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            44579999 99999999999999998 589999999975

>PRK13748 putative mercuric reductase; Provisional

Probab=97.55  E-value=0.00011  Score=61.12  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|+.+|.++++ .+.+|+|||++.
T Consensus        97 ~~~Dvv-VIG~GpaG~~aA~~~~~-~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVA-VIGSGGAAMAAALKAVE-QGARVTLIERGT  131 (561)
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            469999 99999999999999998 589999999874

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.55  E-value=0.00016  Score=51.37  Aligned_cols=32  Identities=38%  Similarity=0.593  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      |++ |||||.||+.+|.+|.. .+.+|+++|+.+
T Consensus         1 ~vv-IIGgG~aGl~aA~~l~~-~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVV-IIGGGPAGLSAALELAR-PGAKVLIIEKSP   32 (201)
T ss_dssp             EEE-EESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred             CEE-EEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence            578 99999999999999996 799999997754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00058 glutathione reductase; Provisional

Probab=97.55  E-value=0.00014  Score=61.70  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus        47 ~~yDvv-VIG~G~aG~~aA~~aa~-~G~~ValIEk~~~   82 (561)
T PTZ00058         47 MVYDLI-VIGGGSGGMAAARRAAR-NKAKVALVEKDYL   82 (561)
T ss_pred             ccccEE-EECcCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            469999 99999999999999998 5899999998643

>PRK06834 hypothetical protein; Provisional

Probab=97.55  E-value=0.00012  Score=60.72  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 ~~~dVl-IVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVV-IAGGGPTGLMLAGELAL-AGVDVAIVERRPN   37 (488)
T ss_pred             CcceEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            358999 99999999999999998 5899999998764

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.55  E-value=0.00012  Score=58.08  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      |++ |||||.+|+++|.+|++ .+.+|+|||++.
T Consensus         2 ~v~-IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~   33 (416)
T PRK00711          2 RVV-VLGSGVIGVTSAWYLAQ-AGHEVTVIDRQP   33 (416)
T ss_pred             EEE-EECCcHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            788 99999999999999998 489999999975

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.54  E-value=0.00012  Score=52.24  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             EeCccHHHHHHHHHHHHhcCCe-EEEEcCCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWS-VLLLEAGPDE   76 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~~   76 (107)
                      |||||++|+++|.+|.+. +.+ |+|||++...
T Consensus         2 IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~   33 (203)
T PF13738_consen    2 IIGAGPAGLAAAAHLLER-GIDPVVVLERNDRP   33 (203)
T ss_dssp             EE--SHHHHHHHHHHHHT-T---EEEEESSSSS
T ss_pred             EECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Confidence            899999999999999985 777 9999998654

...

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.54  E-value=0.00011  Score=62.71  Aligned_cols=34  Identities=41%  Similarity=0.586  Sum_probs=31.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||||.+|+++|..|++ .+.+|+|||++.
T Consensus       260 ~~dVv-IIGaGIaG~s~A~~La~-~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAA-IIGGGIAGAALALALAR-RGWQVTLYEADE  293 (662)
T ss_pred             CCCEE-EECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            47999 99999999999999998 489999999974

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.54  E-value=0.00011  Score=61.74  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEa   72 (107)
                      ..+|++ |||||.+|+++|+.|++. ++++|+|+|+
T Consensus         5 ~~~Dvv-IIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          5 ESKDVV-LVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             ccCCEE-EECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            468999 999999999999999983 5799999999

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.53  E-value=0.00012  Score=62.26  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ||++ |||+|++|+++|+.|++ .+++|++||++....
T Consensus         1 ~dv~-ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVF-IAGSGPIGCTYARLCVD-AGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEE-EECCchHHHHHHHHHHH-CCCeEEEEeccCccC
Confidence            6999 99999999999999998 479999999987653

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.53  E-value=0.00012  Score=61.69  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         2 ~~~DVl-VIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVV-IVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEE-EECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            357999 999999999999999974 2589999999864

>PRK07233 hypothetical protein; Provisional

Probab=97.52  E-value=0.00013  Score=57.53  Aligned_cols=34  Identities=32%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus         1 ~vv-VIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIA-IVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL   34 (434)
T ss_pred             CEE-EECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence            367 99999999999999998 48999999997643

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.52  E-value=0.00014  Score=60.44  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus         5 ~yDvi-VIG~GpaG~~AA~~aa~-~G~~V~lie~   36 (499)
T PTZ00052          5 MYDLV-VIGGGSGGMAAAKEAAA-HGKKVALFDY   36 (499)
T ss_pred             ccCEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            58999 99999999999999998 5899999996

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.51  E-value=0.00014  Score=61.78  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=33.1

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         9 ~~~~~DVv-VIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~   46 (598)
T PRK09078          9 IDHKYDVV-VVGAGGAGLRATLGMAE-AGLKTACITKVFP   46 (598)
T ss_pred             cccccCEE-EECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            33568999 99999999999999998 5789999999754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.50  E-value=0.00014  Score=60.42  Aligned_cols=37  Identities=41%  Similarity=0.387  Sum_probs=32.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .+||++ |||||..|+++|..|++. |.++|+|||+-..
T Consensus         2 ~~~Dvv-IIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~   39 (429)
T COG0579           2 MDYDVV-IIGGGIMGAATAYELSEYEPDLSVALLEKEDG   39 (429)
T ss_pred             CceeEE-EECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            569999 999999999999999994 4599999999654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.50  E-value=0.00014  Score=59.47  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -|++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus         2 ~dvv-IIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVV-VIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            4788 99999999999999998 59999999997543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.50  E-value=0.00014  Score=60.94  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus        14 ~~~~DVl-VIG~G~AGl~AAi~aae-~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVV-VVGSGVAGLTAALAARR-AGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEE-EECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence            3468999 99999999999999998 58899999998653

>PRK08275 putative oxidoreductase; Provisional

Probab=97.49  E-value=0.00014  Score=60.95  Aligned_cols=37  Identities=35%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         8 ~~~DVl-VIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDIL-VIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEE-EECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            458999 999999999999999874 3689999999875

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.49  E-value=0.00015  Score=59.53  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         2 ~DVv-VVGaG~AGl~AAi~aae-~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVG-IVGGGLAGLTAAISLAK-KGFDVTIIGPGIK   35 (466)
T ss_pred             CeEE-EECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            6999 99999999999999998 5899999999753

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.48  E-value=0.00015  Score=61.49  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         2 ~~~DVl-VVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~   37 (589)
T PRK08641          2 AKGKVI-VVGGGLAGLMATIKAAE-AGVHVDLFSLVPV   37 (589)
T ss_pred             CCccEE-EECchHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            346999 99999999999999988 5899999998754

>PLN02815 L-aspartate oxidase

Probab=97.47  E-value=0.00021  Score=60.96  Aligned_cols=41  Identities=22%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             ccCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +......+|++ |||+|.||+.+|.++++. + +|+|||+....
T Consensus        23 ~~~~~~~~DVl-VVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~   63 (594)
T PLN02815         23 DDESTKYFDFL-VIGSGIAGLRYALEVAEY-G-TVAIITKDEPH   63 (594)
T ss_pred             ccCcccccCEE-EECccHHHHHHHHHHhhC-C-CEEEEECCCCC
Confidence            34455568999 999999999999999884 6 89999997653

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.47  E-value=0.00016  Score=61.78  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||+...
T Consensus         7 ~~~DVv-VIG~G~AGl~AAl~Aae-~G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVV-VIGAGGAGLRAAIEARE-RGLRVAVVCKSLF   42 (626)
T ss_pred             eeecEE-EECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence            468999 99999999999999988 5899999999754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.47  E-value=0.00018  Score=59.80  Aligned_cols=38  Identities=29%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||+|++|+++|..|.+ .+.+|+|||+....
T Consensus         8 ~~~~dV~-IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVV-IVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            4568999 99999999999999998 58999999998643

>PRK07538 hypothetical protein; Provisional

Probab=97.46  E-value=0.00016  Score=57.76  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||||.+|+++|..|++ .+.+|+|+|+.+.
T Consensus         2 dV~-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVL-IAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE   34 (413)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence            788 99999999999999998 5899999999764

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.46  E-value=0.00014  Score=59.45  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             EEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          43 PVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        43 i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      + |||+|.+|+++|.+|++ .+.+|+|+|+...
T Consensus         2 v-VIGaG~~GL~aA~~La~-~G~~V~VlE~~~~   32 (502)
T TIGR02734         2 V-VIGAGFGGLALAIRLAA-AGIPVTVVEQRDK   32 (502)
T ss_pred             E-EECcCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            5 99999999999999998 5899999999764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.45  E-value=0.00018  Score=59.03  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ..||++ |||+|++|+.+|.++++ .+.+|+|||+
T Consensus         3 ~~~Dvi-IIG~G~aG~~aA~~~~~-~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVV-VIGAGPGGYVAAIRAAQ-LGLKVACIEA   35 (475)
T ss_pred             cceeEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            359999 99999999999999998 5899999998

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.45  E-value=0.00018  Score=60.77  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         4 ~~~DVv-VVG~G~AGl~AAl~Aae-~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAV-VIGGGLAGLMSAHEIAS-AGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEE-EECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence            458999 99999999999999988 5899999999754

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.45  E-value=0.00023  Score=59.19  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|++|+++|..|++ .+.+|+|||+...
T Consensus        21 ~~~~dVl-IVGaGpaGl~lA~~L~~-~G~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVV-VVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            3568999 99999999999999998 5999999999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.45  E-value=0.00019  Score=60.45  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus         8 ~~~DVv-VVG~G~aGl~AA~~aa~-~G~~v~llEk~~~   43 (574)
T PRK12842          8 LTCDVL-VIGSGAGGLSAAITARK-LGLDVVVLEKEPV   43 (574)
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            368999 99999999999999998 5889999999764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.44  E-value=0.00019  Score=59.66  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..||++ |||+|++|..+|.++++..+.+|+|||++
T Consensus         2 ~~~Dvi-VIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLV-VIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEE-EECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            359999 99999999999999998437999999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.43  E-value=0.00021  Score=60.74  Aligned_cols=37  Identities=27%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus         6 ~~~DVl-VVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAV-VIGAGGAGMRAALQISQ-SGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEE-EECccHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence            358999 99999999999999988 58999999998543

>PRK10262 thioredoxin reductase; Provisional

Probab=97.42  E-value=0.00022  Score=55.13  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...+|++ |||+|+||+.+|..|.+ .+.+|++||..
T Consensus         4 ~~~~~vv-IIGgGpaGl~aA~~l~~-~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLL-ILGSGPAGYTAAVYAAR-ANLQPVLITGM   38 (321)
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence            4568999 99999999999999998 47889999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.41  E-value=0.00021  Score=60.64  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.++++ .+.+|+|||++..
T Consensus        10 ~~~DVv-VVG~G~AGl~AA~~aae-~G~~VivlEk~~~   45 (584)
T PRK12835         10 REVDVL-VVGSGGGGMTAALTAAA-RGLDTLVVEKSAH   45 (584)
T ss_pred             CcCCEE-EECccHHHHHHHHHHHH-CCCcEEEEEcCCC
Confidence            358999 99999999999999988 5899999998764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.41  E-value=0.00031  Score=60.84  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..||++ |||+|++|..+|.++++ .+.+|+|||.+
T Consensus       115 ~~yDvi-VIG~G~gG~~aA~~aa~-~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVG-IIGCGVGGHAAAINAME-RGLKVIIFTGD  148 (659)
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            368999 99999999999999998 59999999965

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00026  Score=56.09  Aligned_cols=36  Identities=36%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|..+.. .+++ ++|+|.+..
T Consensus         2 ~~~Dvi-IIG~GPAGl~AAiya~r-~~l~~~li~~~~~~   38 (305)
T COG0492           2 KIYDVI-IIGGGPAGLTAAIYAAR-AGLKVVLILEGGEP   38 (305)
T ss_pred             ceeeEE-EECCCHHHHHHHHHHHH-cCCCcEEEEecCCc
Confidence            469999 99999999999999997 5777 788887543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.40  E-value=0.00022  Score=59.43  Aligned_cols=47  Identities=32%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC-CCC---Ccccchhh
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DEN---EVTDVPSL   85 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~-~~~---~~~~iP~~   85 (107)
                      +..||++ |||+|++|..+|.++++. +.+|++||+++ ...   +.-.+|.-
T Consensus         2 ~~~yDvv-VIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK   52 (454)
T COG1249           2 MKEYDVV-VIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSK   52 (454)
T ss_pred             CccccEE-EECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccH
Confidence            3569999 999999999999999995 66699999995 432   33445553

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.40  E-value=0.00017  Score=58.85  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.||+.+|..+.  .+.+|+|||++...
T Consensus         3 ~~~DVv-VVG~G~AGl~AA~~a~--~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVL-IVGSGVAGLYSALNLR--KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEE-EECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence            358999 9999999999999974  48999999998653

>PLN02507 glutathione reductase

Probab=97.40  E-value=0.0002  Score=59.47  Aligned_cols=34  Identities=24%  Similarity=0.066  Sum_probs=30.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ..+||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus        23 ~~~yDvv-VIG~GpaG~~aA~~a~~-~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLF-VIGAGSGGVRAARFSAN-FGAKVGICEL   56 (499)
T ss_pred             ccccCEE-EECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            3469999 99999999999999998 5899999995

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.39  E-value=0.00021  Score=59.85  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|.||+.+|..+++ .+.+|+|||++..
T Consensus         1 DVl-VVG~G~AGl~AA~~aae-~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVV-IVGAGLAGLRAAVEAAK-AGLNTAVISKVYP   33 (566)
T ss_pred             CEE-EECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            788 99999999999999998 4899999999754

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.39  E-value=0.00021  Score=60.88  Aligned_cols=37  Identities=30%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus        10 ~~~DVl-VIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         10 VDTDIL-IIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eEeCEE-EECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            458999 999999999999999884 3889999999864

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.38  E-value=0.00029  Score=59.32  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=33.4

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus         4 ~~~~~Dvv-VvG~G~aG~~aA~~aa~-~G~~v~llEk~~~   41 (557)
T PRK07843          4 TVQEYDVV-VVGSGAAGMVAALTAAH-RGLSTVVVEKAPH   41 (557)
T ss_pred             CCCcCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            34578999 99999999999999998 5899999999653

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.38  E-value=0.00025  Score=57.43  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhc-----CCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVA-----HWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~-----~~~VlvIEag~~   75 (107)
                      +++ |||||.+|+++|++|.+..     +.+|+|+|+.+.
T Consensus         3 ~v~-VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          3 TVV-VIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             eEE-EECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            577 9999999999999999742     479999999754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.37  E-value=0.00024  Score=59.86  Aligned_cols=37  Identities=24%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++..  +.+|+|||++..
T Consensus         4 ~~~DVl-VVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          4 LKYDVV-IVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             eecCEE-EECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            358999 9999999999999999853  189999999764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.36  E-value=0.00028  Score=60.51  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=33.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||||++|+++|..|++..+.+|.|||+.+..
T Consensus        30 ~~~~dVl-IVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         30 PDEVDVL-IVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            4478999 99999999999999997338999999987643

>PRK05868 hypothetical protein; Validated

Probab=97.35  E-value=0.00031  Score=55.84  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .|++ |||||.+|+++|..|++ .+++|.|+|+.+..
T Consensus         2 ~~V~-IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVV-VSGASVAGTAAAYWLGR-HGYSVTMVERHPGL   36 (372)
T ss_pred             CeEE-EECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence            3788 99999999999999998 58999999997654

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.34  E-value=0.00026  Score=60.83  Aligned_cols=36  Identities=25%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus        49 ~~~DVl-VIG~G~AGl~AAl~Aae-~G~~VilveK~~~   84 (635)
T PLN00128         49 HTYDAV-VVGAGGAGLRAAIGLSE-HGFNTACITKLFP   84 (635)
T ss_pred             eecCEE-EECccHHHHHHHHHHHh-cCCcEEEEEcCCC
Confidence            358999 99999999999999988 5899999999864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.33  E-value=0.00025  Score=59.34  Aligned_cols=35  Identities=29%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++ + .+.+|+|||++..
T Consensus         6 ~~~DVl-VVG~G~AGl~AAi~A-~-~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVL-IIGSGGAGARAAIEA-E-RGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEE-EECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence            357999 999999999999999 6 5899999999754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.33  E-value=0.00031  Score=60.34  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.||+++|.++++ .+.+|+|||+..
T Consensus        34 ~~~DVl-VVG~G~AGl~AAi~Aae-~G~~VilieK~~   68 (640)
T PRK07573         34 RKFDVI-VVGTGLAGASAAATLGE-LGYNVKVFCYQD   68 (640)
T ss_pred             cccCEE-EECccHHHHHHHHHHHH-cCCcEEEEecCC
Confidence            368999 99999999999999988 589999999754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.32  E-value=0.00028  Score=60.76  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.||+.+|.++++ .+.+|+|||+....
T Consensus         4 ~~~DVl-VIG~G~AGl~AAi~Aae-~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDAL-VIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEE-EECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence            358999 99999999999999998 58999999987654

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.32  E-value=0.0003  Score=59.63  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         3 ~~~DVl-VVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~   40 (582)
T PRK09231          3 FQADLA-IIGAGGAGLRAAIAAAEANPNLKIALISKVYP   40 (582)
T ss_pred             eeeeEE-EECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            358999 999999999999999874 3579999999854

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.32  E-value=0.00033  Score=59.07  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus         5 ~~~Dvv-IiG~G~aGl~aA~~~a~-~G~~v~liEk~~~   40 (557)
T PRK12844          5 ETYDVV-VVGSGGGGMCAALAAAD-SGLEPLIVEKQDK   40 (557)
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            368999 99999999999999998 4899999998643

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.29  E-value=0.00029  Score=59.53  Aligned_cols=36  Identities=28%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.||+++|.++.+  +.+|+|||++..
T Consensus         7 ~~e~DVl-VVG~G~AGl~AAi~A~~--G~~V~lieK~~~   42 (553)
T PRK07395          7 PSQFDVL-VVGSGAAGLYAALCLPS--HLRVGLITKDTL   42 (553)
T ss_pred             cccCCEE-EECccHHHHHHHHHhhc--CCCEEEEEccCC
Confidence            3458999 99999999999999864  789999999764

>PLN02546 glutathione reductase

Probab=97.28  E-value=0.00033  Score=59.45  Aligned_cols=32  Identities=25%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus        79 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~liE~  110 (558)
T PLN02546         79 DFDLF-TIGAGSGGVRASRFASN-FGASAAVCEL  110 (558)
T ss_pred             CCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            58999 99999999999999998 5999999995

>KOG1298|consensus

Probab=97.28  E-value=0.00031  Score=58.55  Aligned_cols=39  Identities=26%  Similarity=0.253  Sum_probs=34.0

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....+|+| |||+|.+|+++|+.|+++ +.+|+|||+.-.+
T Consensus        42 ~~~~~DvI-IVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E   80 (509)
T KOG1298|consen   42 NDGAADVI-IVGAGVAGSALAYALAKD-GRRVHVIERDLSE   80 (509)
T ss_pred             cCCcccEE-EECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence            44568999 999999999999999984 8999999997544

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.28  E-value=0.00034  Score=59.19  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ . .+|+|||++..
T Consensus         4 ~~~DVl-VIG~G~AGl~AAl~aa~-~-~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVV-IVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP   38 (583)
T ss_pred             eeccEE-EECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence            358999 99999999999999987 3 89999999754

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.27  E-value=0.0004  Score=55.33  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=30.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -+++ |||||.+|+++|..|++ .+++|.|+|+.+.
T Consensus         3 ~~V~-IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPL-IAGAGVAGLSAALELAA-RGWAVTIIEKAQE   36 (400)
T ss_pred             CcEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            3678 99999999999999998 6899999998764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.27  E-value=0.00039  Score=55.50  Aligned_cols=35  Identities=37%  Similarity=0.563  Sum_probs=29.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||.+|+++|..|++.++.+|.|+|+.+..
T Consensus         2 ~V~-IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVA-IIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEE-EECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            467 99999999999999998544799999997653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.26  E-value=0.00044  Score=56.87  Aligned_cols=35  Identities=23%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|..+|.+|++ .+.+|++||++.
T Consensus        15 ~~~dvv-vIG~G~aG~~~a~~~~~-~g~~v~~ie~~~   49 (479)
T PRK14727         15 LQLHVA-IIGSGSAAFAAAIKAAE-HGARVTIIEGAD   49 (479)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            468999 99999999999999998 588999999873

>PLN02568 polyamine oxidase

Probab=97.25  E-value=0.00051  Score=58.00  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhc----CCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVA----HWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~----~~~VlvIEag~~~   76 (107)
                      ...|++ |||+|.+|+++|.+|.+..    +.+|+|+|+....
T Consensus         4 ~~~~v~-iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIV-IIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            346899 9999999999999999743    3899999997643

>KOG2415|consensus

Probab=97.23  E-value=0.00034  Score=59.00  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-----cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-----AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-----~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|+||+++|.||.+-     ..++|+|+|++..
T Consensus        75 e~~Dv~-IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~  116 (621)
T KOG2415|consen   75 EEVDVV-IVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE  116 (621)
T ss_pred             ccccEE-EECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence            468999 999999999999999762     4689999999764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.22  E-value=0.0006  Score=56.46  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+++ |||||++|+++|.+|.+ .+.+|+|+|++..-
T Consensus         9 ~~~~Va-IIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v   45 (461)
T PLN02172          9 NSQHVA-VIGAGAAGLVAARELRR-EGHTVVVFEREKQV   45 (461)
T ss_pred             CCCCEE-EECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence            347899 99999999999999998 48999999997643

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.22  E-value=0.00041  Score=57.85  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ++|++ |||+|.||+.+|.++.+  +.+|+|||+....
T Consensus         3 ~~DVl-VVG~G~AGl~AAl~a~~--g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVI-IIGSGIAALTVAKELCH--EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEE-EECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence            57999 99999999999999875  6899999998653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.21  E-value=0.00048  Score=56.75  Aligned_cols=34  Identities=35%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .||++ |||+|.+|+.+|.++++ .+.+|+|||++.
T Consensus         2 ~~Dvi-IIG~G~aGl~aA~~la~-~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVL-VIGGGLAGLTAALAAAE-AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEE-EECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence            48999 99999999999999998 589999999874

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.21  E-value=0.00047  Score=55.65  Aligned_cols=31  Identities=32%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++ |||+|.+|+++|.+|.+ .+.+|+|+|+.+
T Consensus         2 v~-IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~   32 (453)
T TIGR02731         2 VA-IAGAGLAGLSCAKYLAD-AGHTPIVLEARD   32 (453)
T ss_pred             EE-EECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            56 99999999999999998 589999999975

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.19  E-value=0.00047  Score=58.57  Aligned_cols=37  Identities=27%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .+|++ |||+|.||+.+|..+++. ++.+|+|||++...
T Consensus         3 ~~DVl-VIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         3 QHDIA-VIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             ceeEE-EECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            57999 999999999999999874 36899999997643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.19  E-value=0.0005  Score=56.99  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .||++ |||+|++|..+|.++++ .+.+|++||+.
T Consensus         2 ~yDvv-VIG~G~aG~~aA~~aa~-~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLI-VIGGGSGGLAAAKEAAD-YGAKVMLLDFV   34 (484)
T ss_pred             ccCEE-EECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            48999 99999999999999998 58999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.18  E-value=0.00048  Score=57.69  Aligned_cols=35  Identities=37%  Similarity=0.500  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.++++ . .+|+|||++..
T Consensus         7 ~~~DVl-VVG~G~AGl~AA~~aa~-~-~~VilveK~~~   41 (536)
T PRK09077          7 HQCDVL-IIGSGAAGLSLALRLAE-H-RRVAVLSKGPL   41 (536)
T ss_pred             ccCCEE-EECchHHHHHHHHHHHH-C-CCEEEEeccCC
Confidence            458999 99999999999999987 3 79999999764

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.18  E-value=0.00055  Score=57.19  Aligned_cols=38  Identities=32%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....|+| |||+|.+|+++|+.|.+ .+++|+|+|+.+..
T Consensus         5 ~~~~~vi-ivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVI-IVGAGLAGLSAAYELKK-AGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEE-EECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence            4567999 99999999999999998 59999999997653

>TIGR00551 nadB L-aspartate oxidase

Probab=97.18  E-value=0.00052  Score=56.66  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.||+.+|..+++. +. |+|||+...
T Consensus         2 ~~DVl-VVG~G~AGl~AA~~aa~~-G~-V~lleK~~~   35 (488)
T TIGR00551         2 SCDVV-VIGSGAAGLSAALALADQ-GR-VIVLSKAPV   35 (488)
T ss_pred             CccEE-EECccHHHHHHHHHHHhC-CC-EEEEEccCC
Confidence            47999 999999999999999984 55 999999854

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.17  E-value=0.00077  Score=57.12  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...++|++ |||+| +|+++|...++ .+.+|+|||+.+.
T Consensus        13 ~d~e~Dvv-vvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~   49 (564)
T PRK12845         13 RDTTVDLL-VVGSG-TGMAAALAAHE-LGLSVLIVEKSSY   49 (564)
T ss_pred             CCceeCEE-EECCc-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence            44579999 99999 89999999887 5899999999743

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.00063  Score=56.04  Aligned_cols=39  Identities=21%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~~   76 (107)
                      ....+|++ |||||.+|+++|.+|.+. +.. ++|+|+....
T Consensus         5 ~~~~~~v~-IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~   44 (443)
T COG2072           5 VATHTDVA-IIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV   44 (443)
T ss_pred             cCCcccEE-EECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence            45578999 999999999999999984 555 9999998643

>PRK12839 hypothetical protein; Provisional

Probab=97.14  E-value=0.00072  Score=57.33  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|..+++ .+.+|+|||++..
T Consensus         7 ~~~dv~-ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~   42 (572)
T PRK12839          7 HTYDVV-VVGSGAGGLSAAVAAAY-GGAKVLVVEKAST   42 (572)
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            468999 99999999999999988 4899999998753

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.13  E-value=0.00066  Score=56.42  Aligned_cols=35  Identities=23%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...||++ |||||+||+.+|.++++ .+.+|+||+..
T Consensus       209 ~~~~dvv-IIGgGpaGl~aA~~la~-~G~~v~li~~~  243 (517)
T PRK15317        209 KDPYDVL-VVGGGPAGAAAAIYAAR-KGIRTGIVAER  243 (517)
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecC
Confidence            3469999 99999999999999998 58999999863

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.13  E-value=0.00059  Score=60.54  Aligned_cols=37  Identities=35%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus        11 ~~~~DVl-VVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVL-VIGGGTAGTMAALTAAE-HGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            3468999 99999999999999987 5899999999875

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.11  E-value=0.00063  Score=58.46  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHH---hcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSE---VAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~---~~~~~VlvIEag~~~   76 (107)
                      |++ |||+|.||+.+|.++++   ..+.+|+|||++...
T Consensus         1 DVl-VIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLL-IVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEE-EECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            788 99999999999999972   258899999998653

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.07  E-value=0.00079  Score=61.39  Aligned_cols=37  Identities=27%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..+|+| |||+|.||+++|.+.++ .+.+|+|||+++.
T Consensus       407 t~~~DVv-VVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~  443 (1167)
T PTZ00306        407 SLPARVI-VVGGGLAGCSAAIEAAS-CGAQVILLEKEAK  443 (1167)
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence            3458999 99999999999999988 5899999999764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.07  E-value=0.00079  Score=55.98  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ...||++ |||||+||+.+|.+|++ .+.+|+|||.
T Consensus       210 ~~~~dVv-IIGgGpAGl~AA~~la~-~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVL-VVGGGPAGAAAAIYAAR-KGLRTAMVAE  243 (515)
T ss_pred             cCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            4469999 99999999999999998 6899999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.06  E-value=0.00086  Score=53.67  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +++ |||+|.+|+++|+.|++ .+.+|.|+|+|.
T Consensus         3 sia-IVGaGiAGl~aA~~L~~-aG~~vtV~eKg~   34 (331)
T COG3380           3 SIA-IVGAGIAGLAAAYALRE-AGREVTVFEKGR   34 (331)
T ss_pred             cEE-EEccchHHHHHHHHHHh-cCcEEEEEEcCC
Confidence            577 99999999999999998 599999999975

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.06  E-value=0.00079  Score=56.08  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -|++ |||||.+|+.+|..|++ .+.+|.|+|..+..
T Consensus         3 ~dVv-VIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVN-VIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK   37 (436)
T ss_pred             CcEE-EECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence            4888 99999999999999998 58999999976543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.05  E-value=0.00086  Score=54.72  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +++ |||+|++|..+|.++++ .+.+|+|||++...
T Consensus         2 ~vv-VIG~G~aG~~aA~~~~~-~g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLV-VIGGGPAGYVAAITAAQ-NGKNVTLIDEADLG   35 (458)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCccc
Confidence            577 99999999999999998 58999999997543

>PLN02676 polyamine oxidase

Probab=97.05  E-value=0.001  Score=55.36  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|.+. +. +|+|+|++..
T Consensus        25 ~~~~v~-IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~   61 (487)
T PLN02676         25 PSPSVI-IVGAGMSGISAAKTLSEA-GIEDILILEATDR   61 (487)
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHHc-CCCcEEEecCCCC
Confidence            357999 999999999999999985 66 6999999764

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.03  E-value=0.0011  Score=56.39  Aligned_cols=40  Identities=28%  Similarity=0.290  Sum_probs=35.6

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      .+..+|++ |||||..|+-+|..++. .+++|+|+|+++...
T Consensus         9 ~~~~~Dvi-VIGGGitG~GiArDaA~-RGl~v~LvE~~D~As   48 (532)
T COG0578           9 RMEEFDVI-VIGGGITGAGIARDAAG-RGLKVALVEKGDLAS   48 (532)
T ss_pred             cccCCCEE-EECCchhhHHHHHHHHh-CCCeEEEEecCcccC
Confidence            34779999 99999999999999998 699999999998654

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.01  E-value=0.0011  Score=54.87  Aligned_cols=38  Identities=34%  Similarity=0.452  Sum_probs=33.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ..+|+| |||+|.||+++|.+|++ .+.+|+++|....++
T Consensus         4 ~~~dvi-vvgaglaglvaa~elA~-aG~~V~ildQEgeqn   41 (552)
T COG3573           4 LTADVI-VVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN   41 (552)
T ss_pred             ccccEE-EECccHHHHHHHHHHHh-cCceEEEEccccccc
Confidence            468999 99999999999999998 699999999876554

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.00  E-value=0.00092  Score=55.17  Aligned_cols=45  Identities=33%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCCCC---Ccccchhhh
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPDEN---EVTDVPSLA   86 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~~~---~~~~iP~~~   86 (107)
                      |++ |||||+||..+|..|++..  .++|.|||......   ....+|.+.
T Consensus         1 ~v~-IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~   50 (454)
T PF04820_consen    1 DVV-IVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLR   50 (454)
T ss_dssp             EEE-EE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHH
T ss_pred             CEE-EECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHH
Confidence            577 9999999999999999842  28999999987654   234455443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=96.99  E-value=0.0015  Score=53.87  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+++ |||+|+||+.+|..|++ .+.+|+|+|+...
T Consensus       138 ~~~~~V~-IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~  174 (464)
T PRK12831        138 KKGKKVA-VIGSGPAGLTCAGDLAK-MGYDVTIFEALHE  174 (464)
T ss_pred             CCCCEEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            3457999 99999999999999998 5899999998653

>TIGR00275 flavoprotein, HI0933 family

Probab=96.99  E-value=0.00064  Score=54.88  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=27.4

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |||+|.+|+++|.++++ .+.+|+|+|+.+.
T Consensus         2 IIGgG~aGl~aAi~aa~-~G~~V~llEk~~~   31 (400)
T TIGR00275         2 IIGGGAAGLMAAITAAR-EGLSVLLLEKNKK   31 (400)
T ss_pred             EEEEeHHHHHHHHHHHh-cCCcEEEEecCcc
Confidence            89999999999999998 5899999998764

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07846 mycothione reductase; Reviewed

Probab=96.98  E-value=0.00099  Score=54.55  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---Ccccchhh
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSL   85 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~   85 (107)
                      +||++ |||+|++|..+|.+.   .+.+|+|||++....   +.-.+|.-
T Consensus         1 ~yD~v-VIG~G~~g~~aa~~~---~G~~V~lie~~~~GGtC~n~GCiPsK   46 (451)
T PRK07846          1 HYDLI-IIGTGSGNSILDERF---ADKRIAIVEKGTFGGTCLNVGCIPTK   46 (451)
T ss_pred             CCCEE-EECCCHHHHHHHHHH---CCCeEEEEeCCCCCCcccCcCcchhH
Confidence            38999 999999999888763   389999999865442   23345653

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.96  E-value=0.0013  Score=55.73  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ....+|++ |||+|.+|+++|..+.+ .+.+|+|||+..
T Consensus         9 ~~~~~dvv-vvG~G~aG~~aa~~~~~-~g~~v~~iek~~   45 (581)
T PRK06134          9 PDLECDVL-VIGSGAAGLSAAVTAAW-HGLKVIVVEKDP   45 (581)
T ss_pred             CCCccCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            34468999 99999999999999998 589999999865

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.95  E-value=0.0012  Score=57.44  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...++++ |||||.+|+++|..|.+ .+.+|.|+|+..
T Consensus        79 ~~~~~Vl-IVGgGIaGLalAlaL~r-~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVL-VAGGGIGGLVFALAAKK-KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEE-EECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence            4568999 99999999999999998 589999999965

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.93  E-value=0.0011  Score=59.38  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|+||+.+|..+++ .+.+|+|+|++..
T Consensus       162 ~~~dVv-IIGaGPAGLaAA~~aar-~G~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVL-VVGAGPAGLAAALAAAR-AGARVILVDEQPE  197 (985)
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            358999 99999999999999988 6999999998754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.89  E-value=0.0014  Score=54.69  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .++ |||||.+|+++|++|.+. |+..|.|+|+++.-
T Consensus         2 ~i~-IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIA-IIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             eEE-EECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            356 999999999999999984 45899999998654

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.88  E-value=0.0014  Score=55.95  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=34.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ...+|++ |||+|.||+.+|.++++. +.+|+|||+.....
T Consensus         4 ~~~~Dvv-VIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~r   42 (562)
T COG1053           4 IHEFDVV-VIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKR   42 (562)
T ss_pred             cccCCEE-EECCcHHHHHHHHHHHhc-CCcEEEEEccccCC
Confidence            4568999 999999999999999984 69999999976543

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.86  E-value=0.0012  Score=55.00  Aligned_cols=34  Identities=32%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|.+++   +.+|+|||++..
T Consensus         8 ~~~DVl-VIG~G~AGl~AAl~Aa---~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPV-IVGGGLAGLMAALKLA---PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEE-EECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence            458999 9999999999999986   359999999875

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.85  E-value=0.0014  Score=53.82  Aligned_cols=28  Identities=36%  Similarity=0.464  Sum_probs=24.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEE
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLL   70 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvI   70 (107)
                      |++ |||||.|||.+|..+++ .+.+|+|+
T Consensus         1 DVi-VVGgG~AG~eAA~aaAr-~G~~V~Li   28 (392)
T PF01134_consen    1 DVI-VVGGGHAGCEAALAAAR-MGAKVLLI   28 (392)
T ss_dssp             EEE-EESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred             CEE-EECCCHHHHHHHHHHHH-CCCCEEEE
Confidence            788 99999999999999998 58999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.84  E-value=0.0024  Score=54.83  Aligned_cols=36  Identities=19%  Similarity=0.024  Sum_probs=31.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~   75 (107)
                      .-+++ |||+|.||+++|.+|.++   ++.+|.|+|+...
T Consensus        22 ~~~a~-IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~   60 (576)
T PRK13977         22 NKKAY-IIGSGLASLAAAVFLIRDGQMPGENITILEELDV   60 (576)
T ss_pred             CCeEE-EECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence            45778 999999999999999985   4789999999764

>KOG0685|consensus

Probab=96.83  E-value=0.0016  Score=54.89  Aligned_cols=37  Identities=35%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...++ |||+|.||+.+|.||-+.....|+|+|+.+.-
T Consensus        21 ~~kIv-IIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   21 NAKIV-IIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             CceEE-EECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            34788 99999999999999998778899999998654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.82  E-value=0.0017  Score=54.02  Aligned_cols=33  Identities=36%  Similarity=0.553  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +++ |||||.+|+.+|..|++ .+.+|.|+|..+.
T Consensus         2 ~Vv-VIGgGlAGleaA~~LAr-~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVH-VIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE   34 (433)
T ss_pred             CEE-EECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            677 99999999999999998 5899999997654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03452 mycothione_red mycothione reductase

Probab=96.82  E-value=0.0017  Score=53.19  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=28.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +||++ |||+|++|..+|.+.   .+.+|++||++...
T Consensus         2 ~yD~v-vIG~G~~g~~aa~~~---~g~~V~lie~~~~G   35 (452)
T TIGR03452         2 HYDLI-IIGTGSGNSIPDPRF---ADKRIAIVEKGTFG   35 (452)
T ss_pred             CcCEE-EECCCHHHHHHHHHH---CCCeEEEEeCCCCC
Confidence            58999 999999999886653   38999999986544

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.81  E-value=0.0019  Score=54.64  Aligned_cols=36  Identities=31%  Similarity=0.214  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++|++ |||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus        15 ~~~dvv-vvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~   50 (578)
T PRK12843         15 AEFDVI-VIGAGAAGMSAALFAAI-AGLKVLLVERTEY   50 (578)
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            368999 99999999999999998 5899999998653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.80  E-value=0.0018  Score=53.60  Aligned_cols=33  Identities=39%  Similarity=0.476  Sum_probs=30.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ||++ |||+|.+|+.+|.++.+ .+.+|+|||++.
T Consensus         1 ~Dv~-IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVI-IIGGGLAGLSCALRLAE-AGKKCAIIAAGQ   33 (419)
T ss_pred             CCEE-EECchHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            6899 99999999999999998 489999999985

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.79  E-value=0.0027  Score=52.03  Aligned_cols=37  Identities=32%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...++++ |||+|.+|+.+|..|++ .+.+|.|+|+.+.
T Consensus       131 ~~~~~V~-IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~  167 (449)
T TIGR01316       131 STHKKVA-VIGAGPAGLACASELAK-AGHSVTVFEALHK  167 (449)
T ss_pred             CCCCEEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            3457999 99999999999999998 5899999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.78  E-value=0.0026  Score=52.28  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+.+.
T Consensus       142 ~~~~Vv-IIGaGpAGl~aA~~l~~-~G~~V~vie~~~~  177 (471)
T PRK12810        142 TGKKVA-VVGSGPAGLAAADQLAR-AGHKVTVFERADR  177 (471)
T ss_pred             CCCEEE-EECcCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            446899 99999999999999998 5899999998754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.78  E-value=0.0015  Score=55.76  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=28.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++ |||+|.||+.+|.++++ .+.+|+|||++.
T Consensus         1 Vl-VVG~G~AGl~AAl~Aae-~G~~VilleK~~   31 (603)
T TIGR01811         1 VI-VVGTGLAGGMAAAKLAE-LGYHVKLFSYVD   31 (603)
T ss_pred             CE-EECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence            35 99999999999999988 588999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.78  E-value=0.0034  Score=52.80  Aligned_cols=38  Identities=24%  Similarity=0.188  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~   76 (107)
                      ....++ |||+|+||+.+|..|.+ ..+.+|.|+|+.+..
T Consensus        25 ~~~~Va-IVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVC-VVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEE-EECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            346799 99999999999999985 358999999998754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.77  E-value=0.002  Score=58.47  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||||+||+.+|..|++ .+.+|+|+|+.+.
T Consensus       536 ~~kkVa-IIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVA-VIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            457999 99999999999999998 5899999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.72  E-value=0.0023  Score=55.96  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      +++ |||||++|+++|..|++. ++.+|+|+|+...
T Consensus         2 ~V~-IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIV-CIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEE-EECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            577 999999999999999984 3899999999764

>KOG2614|consensus

Probab=96.70  E-value=0.0027  Score=52.69  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      -+++ |||||.+|++.|..|++ .+++|+|+|...+..
T Consensus         3 ~~Vv-IvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    3 PKVV-IVGGGIVGLATALALHR-KGIDVVVLESREDPR   38 (420)
T ss_pred             CcEE-EECCcHHHHHHHHHHHH-cCCeEEEEeeccccc
Confidence            4688 99999999999999998 699999999976553

>KOG2665|consensus

Probab=96.69  E-value=0.0016  Score=53.36  Aligned_cols=40  Identities=30%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGP   74 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~   74 (107)
                      +.....||.+ |||||..|++.|++|.- .|+++|+|||+..
T Consensus        43 s~s~~~~D~V-vvGgGiVGlAsARel~lrhp~l~V~vleke~   83 (453)
T KOG2665|consen   43 SISKERYDLV-VVGGGIVGLASARELSLRHPSLKVAVLEKEK   83 (453)
T ss_pred             ccccccccEE-EECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence            3345689999 99999999999999985 5799999999964

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.67  E-value=0.0025  Score=52.68  Aligned_cols=32  Identities=28%  Similarity=0.298  Sum_probs=28.6

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++ |||+|.+|+++|.+|++ .+.+|.|+|+...
T Consensus         2 v~-IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~   33 (474)
T TIGR02732         2 VA-IVGAGLAGLSTAVELVD-AGHEVDIYESRSF   33 (474)
T ss_pred             EE-EECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            56 99999999999999998 5899999999654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG2960|consensus

Probab=96.61  E-value=0.00042  Score=54.23  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~   76 (107)
                      ..|++ |||+|++|+.+|+.+++ +|+++|.+||+.-.+
T Consensus        76 esDvv-iVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVV-IVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceE-EECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            35999 99999999999999984 689999999996544

>KOG0405|consensus

Probab=96.60  E-value=0.003  Score=52.26  Aligned_cols=38  Identities=32%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      +.....|||+ +||+|+.|...|+|.++ .+.+|.|+|..
T Consensus        15 a~~~k~fDyl-vIGgGSGGvasARrAa~-~GAkv~l~E~~   52 (478)
T KOG0405|consen   15 AADVKDFDYL-VIGGGSGGVASARRAAS-HGAKVALCELP   52 (478)
T ss_pred             cccccccceE-EEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence            3445589999 99999999999999887 59999999998

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.60  E-value=0.0041  Score=50.75  Aligned_cols=36  Identities=28%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|++|+.+|..|.+ .+.+|.|+|+.+.
T Consensus       139 ~~~~Vv-IIGgGpaGl~aA~~l~~-~g~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVA-VIGAGPAGLTAAHRLAR-KGYDVTIFEARDK  174 (457)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence            346899 99999999999999998 5899999998754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.55  E-value=0.0022  Score=51.84  Aligned_cols=30  Identities=50%  Similarity=0.625  Sum_probs=27.2

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            69999999999999998 4899999999764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02612 phytoene desaturase

Probab=96.53  E-value=0.0044  Score=52.43  Aligned_cols=34  Identities=32%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+++ |||+|.+|+++|.+|.+ .+.+|+|+|+..
T Consensus        93 ~~~v~-iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~  126 (567)
T PLN02612         93 PLKVV-IAGAGLAGLSTAKYLAD-AGHKPILLEARD  126 (567)
T ss_pred             CCCEE-EECCCHHHHHHHHHHHh-cCCeEEEEecCC
Confidence            46889 99999999999999998 589999999964

>KOG3855|consensus

Probab=96.53  E-value=0.0037  Score=52.37  Aligned_cols=39  Identities=33%  Similarity=0.414  Sum_probs=33.6

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~   75 (107)
                      ....||++ |||||+.|..+|..|..++   .+||+++|++..
T Consensus        33 ~~~~~dVv-IvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   33 DTAKYDVV-IVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CcccCCEE-EECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            34579999 9999999999999998754   679999999954

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.0033  Score=53.06  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |+|+|.||+++|..|++ .+..|.|.|+++..
T Consensus         2 rVa-i~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~   35 (485)
T COG3349           2 RVA-IAGAGLAGLAAAYELAD-AGYDVTLYEARDRL   35 (485)
T ss_pred             eEE-EEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence            356 99999999999999998 58999999998754

>KOG1399|consensus

Probab=96.51  E-value=0.0032  Score=52.52  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .-+++ |||+|+||+++|+.|.+ .+..|.++|+...-
T Consensus         6 ~~~va-IIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVA-VIGAGPAGLAAARELLR-EGHEVVVFERTDDI   41 (448)
T ss_pred             CCceE-EECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence            35788 99999999999999998 59999999998754

>KOG2820|consensus

Probab=96.50  E-value=0.0036  Score=51.32  Aligned_cols=38  Identities=32%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....|++ |||+|..|+.+|.+|+++ +.++++||+-+..
T Consensus         5 ~~~~~vi-iVGAGVfG~stAyeLaK~-g~killLeqf~~p   42 (399)
T KOG2820|consen    5 VKSRDVI-IVGAGVFGLSTAYELAKR-GDKILLLEQFPLP   42 (399)
T ss_pred             ccceeEE-EEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence            3457999 999999999999999995 7999999996643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.49  E-value=0.0041  Score=50.99  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus         3 ~vv-viG~G~~G~~~a~~~~~-~g~~v~~~e~~~~   35 (466)
T PRK07845          3 RIV-IIGGGPGGYEAALVAAQ-LGADVTVIERDGL   35 (466)
T ss_pred             cEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccCC
Confidence            688 99999999999999998 5899999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.48  E-value=0.0041  Score=53.28  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|+||+.+|..|.+ .+.+|+|+|+.+.
T Consensus       326 ~~~~Va-IIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVA-IIGAGPAGLACADVLAR-NGVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            346899 99999999999999998 5899999998754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.47  E-value=0.0047  Score=54.91  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+++ |||+|.+|+.+|..|.+ .+.+|+|+|+...
T Consensus       236 ~~~~~v~-IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r  272 (808)
T PLN02328        236 VEPANVV-VVGAGLAGLVAARQLLS-MGFKVVVLEGRAR  272 (808)
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecccc
Confidence            3457899 99999999999999988 5899999999653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.46  E-value=0.0041  Score=53.86  Aligned_cols=33  Identities=30%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ||++ |||+|.+|+.+|..+++ .+.+|+|||...
T Consensus         1 yDVi-VIGaG~AGl~aA~ala~-~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVI-VIGGGHAGCEAALAAAR-MGAKTLLLTLNL   33 (617)
T ss_pred             CeEE-EECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            6999 99999999999999998 588999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.46  E-value=0.0086  Score=37.60  Aligned_cols=34  Identities=29%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ++ |||+|..|+-+|..|++ .+.+|.+|+.++...
T Consensus         2 vv-ViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VV-VIGGGFIGIELAEALAE-LGKEVTLIERSDRLL   35 (80)
T ss_dssp             EE-EESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred             EE-EECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence            45 99999999999999998 589999999987644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.45  E-value=0.0051  Score=53.49  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...+++ |||+|+||+.+|..|++ .+.+|+|+|+.+
T Consensus       430 ~~~~V~-IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVA-VIGSGPAGLSFAGDLAK-RGYDVTVFEALH  464 (752)
T ss_pred             CCCEEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            456899 99999999999999998 589999999854

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.35  E-value=0.006  Score=55.14  Aligned_cols=37  Identities=27%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+++ |||+|+||+++|..|++ .+.+|+|+|+.+..
T Consensus       429 ~~~kVa-IIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVA-ICGSGPAGLAAAADLVK-YGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            346899 99999999999999998 48999999997643

>PLN02529 lysine-specific histone demethylase 1

Probab=96.34  E-value=0.0057  Score=53.88  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+...
T Consensus       159 ~~~~v~-viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~  194 (738)
T PLN02529        159 TEGSVI-IVGAGLAGLAAARQLLS-FGFKVVVLEGRNR  194 (738)
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-cCCcEEEEecCcc
Confidence            457899 99999999999999998 5899999999653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.33  E-value=0.005  Score=55.37  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+++ |||+|+||+++|..|.+ .+.+|.|+|+.+.
T Consensus       306 gkkVa-VIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~  340 (944)
T PRK12779        306 KPPIA-VVGSGPSGLINAYLLAV-EGFPVTVFEAFHD  340 (944)
T ss_pred             CCeEE-EECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence            46889 99999999999999998 5899999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.33  E-value=0.006  Score=49.08  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||+|.+|+.+|..|.+. ++.+|.|||+.+.
T Consensus         2 ~vv-IIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KII-IIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEE-EECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            467 999999999999999874 3579999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.32  E-value=0.0063  Score=49.50  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||||.+|..+|.+|.+. ++.+|+|||+.+.
T Consensus         3 ~VV-IIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KII-VVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEE-EECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            577 999999999999999873 4789999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.26  E-value=0.006  Score=55.48  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|+||+.+|..|++ .+.+|.|+|+.+.
T Consensus       538 tgKkVa-IIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~  573 (1019)
T PRK09853        538 SRKKVA-VIGAGPAGLAAAYFLAR-AGHPVTVFEREEN  573 (1019)
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            346899 99999999999999998 5899999998754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.21  E-value=0.0083  Score=51.58  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|++|+.+|..|++ .+.+|.|+|+...
T Consensus       192 ~~k~Va-IIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVA-IIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            346899 99999999999999998 5899999998754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.19  E-value=0.0089  Score=47.77  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .+++ |||+|.||+.+|..|.+. ...+|.||++...
T Consensus         4 ~~vv-IIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~   39 (396)
T PRK09754          4 KTII-IVGGGQAAAMAAASLRQQGFTGELHLFSDERH   39 (396)
T ss_pred             CcEE-EECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            4688 999999999999999874 3458999998753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.16  E-value=0.0088  Score=47.07  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+++ |||+|.+|+.+|..|.+ .+.+|.++|+.+..
T Consensus        18 ~~~Vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVA-IIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            35888 99999999999999997 58999999997653

>KOG4716|consensus

Probab=96.16  E-value=0.0061  Score=50.50  Aligned_cols=38  Identities=24%  Similarity=0.189  Sum_probs=32.9

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ......||.| |||||++|+++|.+.+. -+.+|+++|.-
T Consensus        14 ~~~sydyDLI-viGgGSgGLacaKeAa~-~G~kV~~lDfV   51 (503)
T KOG4716|consen   14 LFSSYDYDLI-VIGGGSGGLACAKEAAD-LGAKVACLDFV   51 (503)
T ss_pred             hcccCCccEE-EEcCCcchhhHHHHHHh-cCCcEEEEeec
Confidence            4455679999 99999999999999887 58999999873

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.09  E-value=0.0073  Score=48.26  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .||+| .||.|++++++|..|.+.+..+++.+|+.+.-
T Consensus         2 ~~D~i-gIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLI-GIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEE-EE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEE-EEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            58999 99999999999999999778999999987643

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.04  E-value=0.016  Score=47.87  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|++|+.+|..|++ .+.+|.++|+.+.
T Consensus       140 ~~~~V~-IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVA-VIGAGPAGLACADILAR-AGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            446899 99999999999999998 5889999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.03  E-value=0.01  Score=48.07  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+.+++ |||||.||+.+|.+|.. .+.+|.|||..+..
T Consensus         8 ~~~~~vV-IvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVV-VLGTGWAGAYFVRNLDP-KKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEE-EECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence            3446899 99999999999999964 46899999987654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.02  E-value=0.01  Score=48.83  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||||.||+..+.+|.+ .+.++.||-.|..
T Consensus         2 ~fDv~-IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVA-IIGGGLAGLTCGLALQQ-AGKRCAIVNRGQS   36 (421)
T ss_pred             cccEE-EEcCcHHHHHHHHHHHh-cCCcEEEEeCChh
Confidence            58999 99999999999999998 5888888888754

>PLN02487 zeta-carotene desaturase

Probab=96.02  E-value=0.01  Score=50.67  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+++ |||+|.+|+++|.+|.+ .+.+|.|+|+.+..
T Consensus        75 ~~~v~-iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~  110 (569)
T PLN02487         75 KLKVA-IIGAGLAGMSTAVELLD-QGHEVDIYESRPFI  110 (569)
T ss_pred             CCeEE-EECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence            45888 99999999999999998 48999999996543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.99  E-value=0.014  Score=49.98  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|++|+.+|..|++ .+.+|.|+|+.+.
T Consensus       309 ~~kkVa-IIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVA-VIGAGPAGLGCADILAR-AGVQVDVFDRHPE  344 (639)
T ss_pred             CCCEEE-EECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence            356788 99999999999999998 5889999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.92  E-value=0.017  Score=47.96  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+++ |||+|.+|+.+|..|.+ .+.+|.|+|+.+.
T Consensus       143 ~~~V~-IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVA-VVGSGPAGLAAADQLNR-AGHTVTVFEREDR  177 (485)
T ss_pred             CCEEE-EECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            36889 99999999999999998 5899999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.91  E-value=0.012  Score=49.74  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||.+|+++|..|.+ .++.|.++|+.++-
T Consensus         3 rVa-VIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVA-VIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI   36 (531)
T ss_dssp             EEE-EE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred             EEE-EECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence            366 99999999999999998 58999999998764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.86  E-value=0.019  Score=48.82  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...++ |||+|+||+.+|.+|....+.+|.|+|+.+..
T Consensus        39 ~krVA-IVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVG-IIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEE-EECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            35688 99999999999998875568999999998765

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.84  E-value=0.015  Score=48.54  Aligned_cols=39  Identities=23%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ...||+| |+|.|..-+.+|..|+. .+.+||.||+.+...
T Consensus         2 ~~~yDvi-I~GTGl~esila~als~-~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVI-ILGTGLTESILAAALSR-SGKKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEE-EE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred             CccceEE-EECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence            4579999 99999999999999998 599999999987653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN03000 amine oxidase

Probab=95.78  E-value=0.014  Score=52.35  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+....
T Consensus       183 ~~~~Vv-IIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVV-IVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEE-EECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence            357899 99999999999999998 58899999997654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=95.75  E-value=0.015  Score=49.20  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~   75 (107)
                      ..+|++ +||||..|++++..|++ .|.++|.|+|+-+.
T Consensus         2 ~~~DVv-LIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~   39 (488)
T PF06039_consen    2 KEYDVV-LIGGGIMSATLGYLLKELEPDWSIAIFERLDS   39 (488)
T ss_pred             CceeEE-EECchHHHHHHHHHHHHhCCCCeEEEEEecCc
Confidence            468999 99999999999999998 68999999999654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.72  E-value=0.015  Score=45.43  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             eEEEeCccHHHHHHHHHHHH--hcCCeEEEEcCCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSE--VAHWSVLLLEAGPDE   76 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~--~~~~~VlvIEag~~~   76 (107)
                      ++ |||||.||..+|.+|.+  .++.+|+|||+....
T Consensus         2 vv-IiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         2 LV-LIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             EE-EECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            56 99999999999999964  357899999987653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.69  E-value=0.014  Score=53.10  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ....++ |||+|+||+.+|..|++ .+.+|.++|+.
T Consensus       382 tgKKVa-VVGaGPAGLsAA~~La~-~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNIL-VTGLGPAGFSLSYYLLR-SGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEE-EECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence            346788 99999999999999998 59999999985

>PRK09897 hypothetical protein; Provisional

Probab=95.67  E-value=0.017  Score=49.12  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      .+++ |||+|++|+.+|.+|.+. ...+|.|+|.+.
T Consensus         2 ~~IA-IIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIA-IVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEE-EECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            4678 999999999999999873 357999999954

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.66  E-value=0.018  Score=45.55  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~   75 (107)
                      .+++ |||+|.||..+|.+|.+ .++.+|.||++...
T Consensus         3 ~~vv-IiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIV-IIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEE-EECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4788 99999999999999987 45778999987653

>KOG2853|consensus

Probab=95.65  E-value=0.012  Score=48.76  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~   75 (107)
                      ...++|++ |||||..|+++|.-|.+.   .+++|+|+|....
T Consensus        83 f~~~~dVv-IIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   83 FPYHCDVV-IIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             cccccCEE-EECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            34578999 999999999999999873   4699999999764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.63  E-value=0.018  Score=49.37  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+ |||||.||..+|..|++ .+.+|.++|+.+.
T Consensus       126 svL-VIGGGvAGitAAl~La~-~G~~v~LVEKeps  158 (622)
T COG1148         126 SVL-VIGGGVAGITAALELAD-MGFKVYLVEKEPS  158 (622)
T ss_pred             ceE-EEcCcHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            577 99999999999999998 5999999999764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.53  E-value=0.021  Score=47.99  Aligned_cols=35  Identities=34%  Similarity=0.525  Sum_probs=30.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .-+++ |||+|++|+.+|..|.+ .+.+|.|+|+.+.
T Consensus       137 g~~V~-VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~  171 (564)
T PRK12771        137 GKRVA-VIGGGPAGLSAAYHLRR-MGHAVTIFEAGPK  171 (564)
T ss_pred             CCEEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            34788 99999999999999988 4789999998653

>KOG1276|consensus

Probab=95.52  E-value=0.023  Score=47.90  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCCCCc
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDENEV   79 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~~~~   79 (107)
                      ..+++ |+|||.+|+++|+.|+.. ++.+|.|.|+++.-..|
T Consensus        11 ~~~va-VvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen   11 GMTVA-VVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             cceEE-EECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence            35788 999999999999999984 56778999998765444

>PRK13984 putative oxidoreductase; Provisional

Probab=95.47  E-value=0.029  Score=47.46  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+++ |||+|.+|+.+|..|.+ .+.+|.|+|+.+.
T Consensus       282 ~~~~v~-IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVA-IVGSGPAGLSAAYFLAT-MGYEVTVYESLSK  317 (604)
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            345788 99999999999999998 5899999998764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.43  E-value=0.028  Score=39.68  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             EeCccHHHHHHHHHHHHh----cCCeEEEEcCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEV----AHWSVLLLEAGPD   75 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~----~~~~VlvIEag~~   75 (107)
                      |||+|++|+.++.+|.+.    ...+|.|+|+.+.
T Consensus         2 IIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    2 IIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             EECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            899999999999999986    3689999999554

>KOG0042|consensus

Probab=95.41  E-value=0.0075  Score=52.13  Aligned_cols=38  Identities=29%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ..||++ |||||..|.-+|.-.+. .+++|.++|+++..+
T Consensus        66 ~~fDVL-IIGGGAtGaGcALDA~T-RGLktaLVE~~DF~S  103 (680)
T KOG0042|consen   66 HEFDVL-IIGGGATGAGCALDAAT-RGLKTALVEAGDFAS  103 (680)
T ss_pred             CcccEE-EECCCccCcceeehhhc-ccceeEEEecccccC
Confidence            459999 99999998888877665 699999999998764

>PLN02976 amine oxidase

Probab=95.24  E-value=0.027  Score=53.36  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++++ |||+|.+|+.+|.+|.+ .+.+|+|+|+...
T Consensus       693 ~~dV~-IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~  727 (1713)
T PLN02976        693 RKKII-VVGAGPAGLTAARHLQR-QGFSVTVLEARSR  727 (1713)
T ss_pred             CCcEE-EECchHHHHHHHHHHHH-CCCcEEEEeeccC
Confidence            47899 99999999999999998 5889999998643

>KOG3851|consensus

Probab=94.94  E-value=0.026  Score=46.51  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      ...+|.++ |||||++|+.+|+++... +.-+|.|||..++.
T Consensus        36 ~~~h~kvL-VvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   36 ARKHFKVL-VVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             cccceEEE-EEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            34679999 999999999999999873 56789999997754

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=94.87  E-value=0.026  Score=48.78  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||+| |||||.||+-+|...++ -+.+++++=-..
T Consensus         3 ~~~DVI-VIGgGHAG~EAA~AaAR-mG~ktlLlT~~~   37 (621)
T COG0445           3 KEYDVI-VIGGGHAGVEAALAAAR-MGAKTLLLTLNL   37 (621)
T ss_pred             CCCceE-EECCCccchHHHHhhhc-cCCeEEEEEcCC
Confidence            349999 99999999999999887 488888876544

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=94.51  E-value=0.04  Score=46.92  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |++ |||+|.||+.+|..|.+  ..+|+||-++...
T Consensus         9 dV~-IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~   41 (518)
T COG0029           9 DVL-IIGSGLAGLTAALSLAP--SFRVTVLTKGPLG   41 (518)
T ss_pred             cEE-EECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence            889 99999999999999997  4999999998765

>KOG1335|consensus

Probab=94.13  E-value=0.061  Score=45.17  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+.|.++|.+.++ .+++...||....
T Consensus        38 ~d~Dvv-vIG~GpGGyvAAikAaQ-lGlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVV-VIGGGPGGYVAAIKAAQ-LGLKTACVEKRGT   73 (506)
T ss_pred             ccCCEE-EECCCCchHHHHHHHHH-hcceeEEEeccCc
Confidence            569999 99999999999999998 5999999999543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.95  E-value=0.086  Score=39.80  Aligned_cols=33  Identities=30%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |+|+|..|..+|..|++ .+..|++||..+.
T Consensus         2 ~ii-IiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KII-IIGAGRVGRSVARELSE-EGHNVVLIDRDEE   34 (225)
T ss_pred             EEE-EECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence            467 99999999999999998 4889999998654

>KOG2755|consensus

Probab=93.54  E-value=0.056  Score=43.36  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~   75 (107)
                      .|+ |||||.||.+.|..|++ .|...|++|-+.+.
T Consensus         1 kfi-vvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFI-VVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeE-EEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            378 99999999999999997 47789999988653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.40  E-value=0.19  Score=34.52  Aligned_cols=29  Identities=34%  Similarity=0.628  Sum_probs=26.7

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      |+|+|..|+..|.+|++ .+.+|.++-.+.
T Consensus         3 I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~   31 (151)
T PF02558_consen    3 IIGAGAIGSLYAARLAQ-AGHDVTLVSRSP   31 (151)
T ss_dssp             EESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred             EECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence            99999999999999998 689999998876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.37  E-value=0.15  Score=42.21  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPDEN   77 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~~~   77 (107)
                      ..++ |||||.+|+.+|.+|.+.+ +.+|.+||......
T Consensus         4 ~~iV-IlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           4 KRIV-ILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             ceEE-EECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            4577 9999999999999999853 58899999987653

>KOG2311|consensus

Probab=93.24  E-value=0.087  Score=45.41  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=27.4

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ....||+| |||||.|||-+|...+.. +.+.+++-.
T Consensus        25 ~~~~~dVv-VIGgGHAG~EAAaAaaR~-Ga~TlLlT~   59 (679)
T KOG2311|consen   25 STSTYDVV-VIGGGHAGCEAAAAAARL-GARTLLLTH   59 (679)
T ss_pred             CCCcccEE-EECCCccchHHHHHHHhc-CCceEEeec
Confidence            45679999 999999999999988874 555555543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=93.08  E-value=0.092  Score=43.62  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +.++. |||+|.+|+++|.-|+.  ..+|.+.|++..
T Consensus         8 r~~IA-VIGsGisGLSAA~~Ls~--rhdVTLfEA~~r   41 (447)
T COG2907           8 RRKIA-VIGSGISGLSAAWLLSR--RHDVTLFEADRR   41 (447)
T ss_pred             CcceE-EEcccchhhhhHHhhhc--ccceEEEecccc
Confidence            45788 99999999999999996  689999999764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.05  E-value=0.17  Score=39.03  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -+.+ |+|+|..|+.+|..+.+ .+.+|.++|..+..
T Consensus       137 ~~v~-vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~  171 (415)
T COG0446         137 KDVV-VVGAGPIGLEAAEAAAK-RGKKVTLIEAADRL  171 (415)
T ss_pred             CeEE-EECCcHHHHHHHHHHHH-cCCeEEEEEccccc
Confidence            4677 99999999999999998 58999999998754

>KOG4254|consensus

Probab=93.02  E-value=0.098  Score=44.62  Aligned_cols=37  Identities=30%  Similarity=0.231  Sum_probs=33.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...||.+ |||+|.-|+.+|..|++ .+.+|+++|....
T Consensus        12 ~~~ydav-vig~GhnGL~aaayl~r-~g~~V~vlerrhv   48 (561)
T KOG4254|consen   12 KPEYDAV-VIGGGHNGLTAAAYLAR-YGQSVAVLERRHV   48 (561)
T ss_pred             CcccceE-EecCCccchhHHHHHHh-cCcceEEEEEeee
Confidence            4579999 99999999999999998 6899999999743

>KOG1800|consensus

Probab=92.79  E-value=0.19  Score=42.07  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      ..+..+. |||+|+||+-+|..|-+. ++..|-|+|+.+.+
T Consensus        18 s~~p~vc-IVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   18 SSTPRVC-IVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             cCCceEE-EECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            3445777 999999999999999884 67999999998765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.55  E-value=0.24  Score=44.26  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~~   76 (107)
                      .++ |||+|.||..+|.+|.+.   .+.+|.||++.+..
T Consensus         5 kIV-IVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLA-IIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEE-EECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            688 999999999999999763   35899999988654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.44  E-value=0.34  Score=31.71  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++ |+|.|..|..++..|.+ .+.+|.+||..+
T Consensus         1 vv-I~G~g~~~~~i~~~L~~-~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VV-IIGYGRIGREIAEQLKE-GGIDVVVIDRDP   31 (116)
T ss_dssp             EE-EES-SHHHHHHHHHHHH-TTSEEEEEESSH
T ss_pred             eE-EEcCCHHHHHHHHHHHh-CCCEEEEEECCc
Confidence            46 99999999999999998 577999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=92.39  E-value=0.14  Score=43.57  Aligned_cols=31  Identities=23%  Similarity=0.116  Sum_probs=27.1

Q ss_pred             EeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD   75 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~   75 (107)
                      |||+|.|++++|..|.++   ++.+|.|+|+-..
T Consensus         7 ivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~   40 (500)
T PF06100_consen    7 IVGSGIASLAAAVFLIRDAKMPGENIHILEELDV   40 (500)
T ss_pred             EECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence            899999999999999875   5779999998553

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.30  E-value=0.2  Score=44.12  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          43 PVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        43 i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      + |||+|.||..+|.+|.+.  .+.+|.|||+.+..
T Consensus         2 V-IIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         2 V-LVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             E-EECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            5 999999999999998763  36799999988653

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.18  E-value=0.21  Score=41.29  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=33.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC-Ccccchhh
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN-EVTDVPSL   85 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~-~~~~iP~~   85 (107)
                      -+. |||+|.||+-+|.++++ .+.+|.+.|-.+... +....-.+
T Consensus         5 ~i~-VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k~TpaH~td~f   48 (439)
T COG1206           5 PIN-VIGAGLAGSEAAWQIAK-RGVPVILYEMRPVKGTPAHKTDNF   48 (439)
T ss_pred             ceE-EEcccccccHHHHHHHH-cCCcEEEEEcccccCCCcccccch
Confidence            355 89999999999999999 699999999987542 43333333

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=91.97  E-value=0.28  Score=41.05  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -.+. |||+|+||+.+|..|+. .+..|.+.|+-+..
T Consensus       124 ~~Va-viGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVA-VIGAGPAGLAAADDLSR-AGHDVTVFERVALD  158 (457)
T ss_pred             CEEE-EECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence            4566 99999999999999998 59999999997654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.93  E-value=0.25  Score=41.79  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~   75 (107)
                      +++++ |||+|..|.++|.+|.+.+  ...|.|+|..+.
T Consensus         1 ~~~VA-IIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           1 MFKVA-IIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             CceEE-EECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            36889 9999999999999998853  334999999654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=91.88  E-value=0.35  Score=34.16  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=26.8

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |+|+|..|.++|..|++ .+.+|.+.....
T Consensus         2 I~-ViGaG~~G~AlA~~la~-~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IA-VIGAGNWGTALAALLAD-NGHEVTLWGRDE   32 (157)
T ss_dssp             EE-EESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred             EE-EECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence            45 99999999999999998 478999988764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.62  E-value=0.3  Score=40.92  Aligned_cols=40  Identities=28%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      +..+|+| .||-|++-+.+|..|.+..+.+++.+|..+.-.
T Consensus         3 ~~~~Dli-GIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~   42 (436)
T COG3486           3 AEVLDLI-GIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS   42 (436)
T ss_pred             CcceeeE-EEccCchHHHHHHHhccccCcceEEEecCCCCC
Confidence            4568999 999999999999999997778999999987643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=91.58  E-value=0.35  Score=38.67  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus       146 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  178 (396)
T PRK09754        146 SVV-IVGAGTIGLELAASATQ-RRCKVTVIELAAT  178 (396)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            467 99999999999999987 5889999998764

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.44  E-value=0.22  Score=42.15  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHh----cCCeEEEEcCCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEV----AHWSVLLLEAGPDE   76 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~----~~~~VlvIEag~~~   76 (107)
                      ......+|.+ +||+|++|+-+|++++.+    +..+|++||.|.+.
T Consensus        13 ~~~~~~~~vv-ivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          13 ALMNAALDVV-IVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             HHhhhccceE-EECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            3455679999 999999999999999974    47899999999765

>KOG2404|consensus

Probab=91.40  E-value=0.24  Score=41.05  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -++ |||+|.||++++.++... +-.|+++|+...
T Consensus        11 pvv-VIGgGLAGLsasn~iin~-gg~V~llek~~s   43 (477)
T KOG2404|consen   11 PVV-VIGGGLAGLSASNDIINK-GGIVILLEKAGS   43 (477)
T ss_pred             cEE-EECCchhhhhhHHHHHhc-CCeEEEEeccCC
Confidence            467 999999999999999974 555999998543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=91.34  E-value=0.46  Score=37.01  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=28.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||+|..|+.+|.+|++ .+..|.++..+.
T Consensus         6 m~I~-IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIG-IIGTGAIGGFYGAMLAR-AGFDVHFLLRSD   38 (313)
T ss_pred             cEEE-EECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence            4577 99999999999999998 478998887765

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.07  E-value=0.41  Score=38.72  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       159 ~vv-IIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  191 (438)
T PRK07251        159 RLG-IIGGGNIGLEFAGLYNK-LGSKVTVLDAAST  191 (438)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            467 99999999999999987 5889999999764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=90.97  E-value=0.39  Score=39.31  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|.+|+-+|..|++ .+.+|.+||.++.
T Consensus       182 ~vv-IIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~  214 (472)
T PRK05976        182 SLV-IVGGGVIGLEWASMLAD-FGVEVTVVEAADR  214 (472)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-cCCeEEEEEecCc
Confidence            567 99999999999999998 5889999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=90.60  E-value=0.49  Score=37.42  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       143 ~vv-ViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~  175 (377)
T PRK04965        143 RVL-VVGGGLIGTELAMDLCR-AGKAVTLVDNAAS  175 (377)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCeEEEEecCCc
Confidence            467 99999999999999987 4889999998764

>KOG4405|consensus

Probab=90.56  E-value=0.35  Score=41.03  Aligned_cols=40  Identities=25%  Similarity=0.207  Sum_probs=34.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ....||+| |||.|..-+++|+.-++ .|.+||.||..++..
T Consensus         5 lP~~fDvV-ViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG   44 (547)
T KOG4405|consen    5 LPEEFDVV-VIGTGLPESILAAACSR-SGSSVLHLDSNEYYG   44 (547)
T ss_pred             CchhccEE-EEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence            34569999 99999999999998887 599999999987653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.44  E-value=0.62  Score=33.87  Aligned_cols=30  Identities=27%  Similarity=0.568  Sum_probs=25.3

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |||+|..|..+|..++. .+.+|.++|..+.
T Consensus         4 ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   33 (180)
T PF02737_consen    4 VIGAGTMGRGIAALFAR-AGYEVTLYDRSPE   33 (180)
T ss_dssp             EES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred             EEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            99999999999999998 5999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=90.17  E-value=0.5  Score=38.22  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       172 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  204 (461)
T TIGR01350       172 SLV-IIGGGVIGIEFASIFAS-LGSKVTVIEMLDR  204 (461)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCC
Confidence            577 99999999999999988 4889999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=89.84  E-value=0.45  Score=36.10  Aligned_cols=26  Identities=35%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          50 SAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        50 ~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .||+++|.+|++ .+.+|+|+|+.+..
T Consensus         1 iaGL~aA~~L~~-~G~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAK-AGYDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred             ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence            489999999998 48899999998654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.82  E-value=0.59  Score=36.48  Aligned_cols=33  Identities=33%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |+|+|..|..+|.+|++ .+..|.++.++.
T Consensus         3 m~I~-IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWH-ILGAGSLGSLWACRLAR-AGLPVRLILRDR   35 (305)
T ss_pred             ceEE-EECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence            3577 99999999999999998 478899998864

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=89.76  E-value=0.61  Score=38.09  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+.+ .+.+|.++|.++.
T Consensus       172 ~vv-IIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~  204 (458)
T PRK06912        172 SLL-IVGGGVIGCEFASIYSR-LGTKVTIVEMAPQ  204 (458)
T ss_pred             cEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            577 99999999999999987 5789999998764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.51  E-value=0.61  Score=38.38  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       176 ~vv-IiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~  208 (471)
T PRK06467        176 RLL-VMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQ  208 (471)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCCEEEEecCCC
Confidence            567 99999999999999987 5889999998864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.42  E-value=0.68  Score=37.93  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=27.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|.+|+.+|..|.+ .+.+|.++|..+
T Consensus        18 ~v~-viG~G~~G~~~A~~L~~-~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVV-VAGLGVSGFAAADALLE-LGARVTVVDDGD   49 (480)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            567 99999999999998887 588999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=89.22  E-value=0.71  Score=37.06  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+|+.+..
T Consensus       139 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  171 (427)
T TIGR03385       139 NVV-IIGGGYIGIEMAEALRE-RGKNVTLIHRSER  171 (427)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence            567 99999999999999987 5788999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR02053 MerA mercuric reductase

Probab=89.08  E-value=0.69  Score=37.66  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       168 ~vv-IIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  200 (463)
T TIGR02053       168 SLA-VIGGGAIGVELAQAFAR-LGSEVTILQRSDR  200 (463)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence            567 99999999999999987 4789999998854

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07846 mycothione reductase; Reviewed

Probab=89.06  E-value=0.73  Score=37.77  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       168 ~vv-IIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~  200 (451)
T PRK07846        168 SLV-IVGGGFIAAEFAHVFSA-LGVRVTVVNRSGR  200 (451)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence            577 99999999999999987 5889999998764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.68  E-value=0.84  Score=37.07  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++..
T Consensus       174 ~vv-VvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLV-VIGGGYIGVEFASAYAS-LGAEVTIVEALPRI  207 (462)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence            467 99999999999999987 58899999987643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.65  E-value=0.82  Score=34.67  Aligned_cols=30  Identities=27%  Similarity=0.460  Sum_probs=26.3

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      +. |+|+|..|..+|..|++ .+..|.++...
T Consensus         3 I~-IiG~G~~G~~~a~~L~~-~g~~V~~~~r~   32 (304)
T PRK06522          3 IA-ILGAGAIGGLFGAALAQ-AGHDVTLVARR   32 (304)
T ss_pred             EE-EECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            56 99999999999999998 47889999873

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=88.57  E-value=0.55  Score=38.97  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=29.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc------------CCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA------------HWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~------------~~~VlvIEag~~~   76 (107)
                      ..++ |+|||..|.=+|.+|.+..            ..+|.|||+++.-
T Consensus       156 lti~-IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         156 LTIV-IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eEEE-EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            4688 9999999999999987731            2499999999754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.50  E-value=0.86  Score=36.99  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=27.8

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +. |||.|.+|..+|..|.+ .+.+|.+.|.....
T Consensus         3 v~-viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~~   35 (459)
T PRK02705          3 AH-VIGLGRSGIAAARLLKA-QGWEVVVSDRNDSP   35 (459)
T ss_pred             EE-EEccCHHHHHHHHHHHH-CCCEEEEECCCCch
Confidence            55 99999999999888887 58999999987543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=88.36  E-value=0.82  Score=34.84  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=25.7

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      +. |+|+|..|+.+|..|++. +..|.++..
T Consensus         3 I~-IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          3 IA-VVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             EE-EECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            56 999999999999999984 788988877

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.34  E-value=0.29  Score=40.98  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeE-EEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSV-LLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~V-lvIEa   72 (107)
                      ..||++ |||+|+||.++|...++ .+.+. ++-|+
T Consensus       210 ~~yDVL-vVGgGPAgaaAAiYaAR-KGiRTGl~aer  243 (520)
T COG3634         210 DAYDVL-VVGGGPAGAAAAIYAAR-KGIRTGLVAER  243 (520)
T ss_pred             CCceEE-EEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence            469999 99999999999998887 45554 33343

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.31  E-value=0.94  Score=37.20  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+++ .+.+|.+||.++.
T Consensus       176 ~vv-IIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~  208 (466)
T PRK06115        176 HLV-VIGAGVIGLELGSVWRR-LGAQVTVVEYLDR  208 (466)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEeCCCC
Confidence            466 99999999999999987 5889999998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=88.26  E-value=0.88  Score=36.88  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       177 ~v~-IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  209 (461)
T PRK05249        177 SLI-IYGAGVIGCEYASIFAA-LGVKVTLINTRDR  209 (461)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            467 99999999999999998 5889999998764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.24  E-value=0.8  Score=35.63  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..|.+ .+.+|.+++..+
T Consensus         4 ~V~-VIG~G~mG~~iA~~la~-~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVA-IIGAGLIGRAWAIVFAR-AGHEVRLWDADP   35 (308)
T ss_pred             EEE-EECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence            456 99999999999999998 488999998864

>KOG2844|consensus

Probab=88.14  E-value=0.61  Score=41.63  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=26.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEa   72 (107)
                      ...|++ |||+|..|+.+|+.|++ .+.+ ++++|.
T Consensus        38 ~~A~vv-ViggG~~g~~~~yhlak-~g~k~avlle~   71 (856)
T KOG2844|consen   38 STADVV-VIGGGSLGCSTAYHLAK-RGMKGAVLLER   71 (856)
T ss_pred             CcccEE-EEcCCchhHHHHHHHHH-ccccceEEEee
Confidence            357999 99999999999999998 4666 444444

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.03  E-value=0.93  Score=37.05  Aligned_cols=33  Identities=21%  Similarity=0.156  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       174 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~  206 (466)
T PRK07818        174 SIV-IAGAGAIGMEFAYVLKN-YGVDVTIVEFLDR  206 (466)
T ss_pred             eEE-EECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            567 99999999999999987 4789999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=87.98  E-value=0.88  Score=37.00  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+++.++.
T Consensus       150 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KAL-VVGAGYISLEVLENLYE-RGLHPTLIHRSDK  182 (438)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            467 99999999999999987 5789999998763

>PRK06370 mercuric reductase; Validated

Probab=87.96  E-value=0.95  Score=36.89  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       173 ~vv-VIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~  205 (463)
T PRK06370        173 HLV-IIGGGYIGLEFAQMFRR-FGSEVTVIERGPR  205 (463)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCC
Confidence            467 99999999999999987 5889999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=87.86  E-value=0.97  Score=37.01  Aligned_cols=33  Identities=15%  Similarity=0.063  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       168 ~vv-IIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~  200 (450)
T TIGR01421       168 RVV-IVGAGYIAVELAGVLHG-LGSETHLVIRHER  200 (450)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            567 99999999999999997 4889999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0399|consensus

Probab=87.70  E-value=0.74  Score=43.67  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      +....-..+. |||.|+||+.+|..|.+ .+..|.|-|+.....
T Consensus      1780 p~~rtg~~va-iigsgpaglaaadqlnk-~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1780 PAFRTGKRVA-IIGSGPAGLAAADQLNK-AGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cccccCcEEE-EEccCchhhhHHHHHhh-cCcEEEEEEecCCcC
Confidence            3333446777 99999999999999998 589999999976543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=87.42  E-value=1.1  Score=36.21  Aligned_cols=34  Identities=35%  Similarity=0.657  Sum_probs=28.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|.-+|..|++.             .+.+|.+||.++.
T Consensus       175 ~vv-VvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFV-VVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEE-EECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            577 999999999999998762             3688999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.41  E-value=1  Score=34.62  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..+++ .+.+|.++|...
T Consensus         5 kIa-ViGaG~mG~~iA~~la~-~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVT-VAGAGVLGSQIAFQTAF-HGFDVTIYDISD   36 (287)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            356 99999999999999997 488999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=87.23  E-value=1.1  Score=36.30  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       171 ~v~-VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  203 (460)
T PRK06292        171 SLA-VIGGGVIGLELGQALSR-LGVKVTVFERGDR  203 (460)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            567 99999999999999987 4889999998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=86.99  E-value=1.1  Score=37.15  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +++ |||+|..|.++|..|+++...+|.+.++..
T Consensus         3 ~il-viGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KIL-VIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEE-EECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            577 999999999999999997668899988864

>KOG2495|consensus

Probab=86.91  E-value=0.15  Score=43.14  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~   75 (107)
                      ..++ |||||+.|.-.|.+|+..             ...+|.+|||.+.
T Consensus       219 Lh~V-VVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  219 LHFV-VVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             EEEE-EECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            5677 999999999999999752             2468999999974

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.86  E-value=1.2  Score=35.91  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=28.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+ .+.+|.++|...
T Consensus         7 ~v~-iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~   38 (450)
T PRK14106          7 KVL-VVGAGVSGLALAKFLKK-LGAKVILTDEKE   38 (450)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            467 99999999999999998 589999998864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.58  E-value=1.9  Score=29.38  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |+|+|.-|+.+|..|+..+-.++.|+|.....
T Consensus         4 ~v~-iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    4 RVL-IIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             EEE-EESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             EEE-EECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            467 99999999999999998645589999987654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=86.46  E-value=1.5  Score=31.33  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEc
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLE   71 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIE   71 (107)
                      .++ |||||..|...+..|.+ .+.+|.||.
T Consensus        15 ~vl-VvGGG~va~rka~~Ll~-~ga~V~VIs   43 (157)
T PRK06719         15 VVV-IIGGGKIAYRKASGLKD-TGAFVTVVS   43 (157)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence            567 99999999999999987 588999984

>TIGR03452 mycothione_red mycothione reductase

Probab=86.41  E-value=1.2  Score=36.39  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+||.++.
T Consensus       171 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  203 (452)
T TIGR03452       171 SLV-IVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK  203 (452)
T ss_pred             cEE-EECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence            567 99999999999999987 5789999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=86.22  E-value=1.3  Score=35.51  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=28.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       151 ~vv-VvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  183 (444)
T PRK09564        151 NIV-IIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR  183 (444)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence            467 99999999999999887 4788999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=86.08  E-value=1.4  Score=35.83  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+++ .+.+|.++|.++.
T Consensus       168 ~vv-VIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~  200 (446)
T TIGR01424       168 SIL-ILGGGYIAVEFAGIWRG-LGVQVTLIYRGEL  200 (446)
T ss_pred             eEE-EECCcHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence            467 99999999999999987 5789999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=86.00  E-value=1.4  Score=36.91  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ++ |||+|..|+-+|..++. -+.+|.|||.++.-.
T Consensus       176 lv-IiGgG~IGlE~a~~~~~-LG~~VTiie~~~~iL  209 (454)
T COG1249         176 LV-IVGGGYIGLEFASVFAA-LGSKVTVVERGDRIL  209 (454)
T ss_pred             EE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCCCC
Confidence            56 99999999999999998 599999999997653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=86.00  E-value=1.6  Score=32.46  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=26.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||||..|...+..|.+ .+.+|.||+..
T Consensus        12 ~vL-VIGgG~va~~ka~~Ll~-~ga~V~VIs~~   42 (202)
T PRK06718         12 RVV-IVGGGKVAGRRAITLLK-YGAHIVVISPE   42 (202)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence            577 99999999999999988 47899999753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=85.98  E-value=1.5  Score=30.98  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      -.++ |||+|..+.-+|..|.+. +.+|.++=+.+
T Consensus       168 k~V~-VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVV-VVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             SEEE-EE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CcEE-EEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            4677 999999999999999985 58888876553

...

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=85.84  E-value=1.5  Score=36.12  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       185 ~vv-VvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  217 (475)
T PRK06327        185 KLA-VIGAGVIGLELGSVWRR-LGAEVTILEALPA  217 (475)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEeCCCc
Confidence            567 99999999999999987 4889999998764

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=85.79  E-value=1.3  Score=36.97  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=32.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .||++ |+|.|.--|+++.+|+- .+.+|++||+.+..
T Consensus         6 ~yDvi-i~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y   41 (434)
T COG5044           6 LYDVI-ILGTGLRESILSAALSW-DGKNVLHIDKNDYY   41 (434)
T ss_pred             cccEE-EecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence            69999 99999999999999997 48999999997654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.60  E-value=1.5  Score=34.17  Aligned_cols=31  Identities=35%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||+|..|+.+|..|++ .+..|.++....
T Consensus         3 I~-IiGaGa~G~ala~~L~~-~g~~V~l~~r~~   33 (326)
T PRK14620          3 IS-ILGAGSFGTAIAIALSS-KKISVNLWGRNH   33 (326)
T ss_pred             EE-EECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence            55 99999999999999998 478898988743

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.40  E-value=1.3  Score=33.95  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||+|..|..+|..|++ .+.+|.+++..+
T Consensus         4 V~-VIG~G~mG~~iA~~la~-~G~~V~~~d~~~   34 (288)
T PRK09260          4 LV-VVGAGVMGRGIAYVFAV-SGFQTTLVDIKQ   34 (288)
T ss_pred             EE-EECccHHHHHHHHHHHh-CCCcEEEEeCCH
Confidence            45 99999999999999998 488999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=85.11  E-value=1.7  Score=35.08  Aligned_cols=33  Identities=33%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+||.++.
T Consensus       160 ~v~-ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  192 (441)
T PRK08010        160 HLG-ILGGGYIGVEFASMFAN-FGSKVTILEAASL  192 (441)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            467 99999999999999997 5889999998764

>KOG1439|consensus

Probab=84.90  E-value=0.53  Score=39.48  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +.||+| |+|-|..-|+++.+|+- .+.+|++||+.+..
T Consensus         3 eeyDvi-vlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    3 EEYDVI-VLGTGLTECILSGALSV-DGKKVLHIDRNDYY   39 (440)
T ss_pred             CceeEE-EEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence            459999 99999999999999997 48899999997654

>KOG3923|consensus

Probab=84.88  E-value=1.5  Score=35.70  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH------hcCCeEEEEcCCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE------VAHWSVLLLEAGPDEN   77 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~------~~~~~VlvIEag~~~~   77 (107)
                      ..+++ |||+|..|++.|..+.+      .+..+|.+++....+.
T Consensus         3 ~~~ia-ViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~   46 (342)
T KOG3923|consen    3 TPRIA-VIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED   46 (342)
T ss_pred             CccEE-EEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence            45788 99999999999977766      2567899998877653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=84.86  E-value=1.8  Score=35.58  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       179 ~vv-VIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~  211 (466)
T PRK07845        179 HLI-VVGSGVTGAEFASAYTE-LGVKVTLVSSRDR  211 (466)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence            467 99999999999999987 5889999998764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.82  E-value=1.3  Score=37.33  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=29.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -.++ |+|.|..|..+|.+|.+ .+..|++||..+.
T Consensus       418 ~hii-I~G~G~~G~~la~~L~~-~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHAL-LVGYGRVGSLLGEKLLA-AGIPLVVIETSRT  451 (558)
T ss_pred             CCEE-EECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            4678 99999999999999998 4789999998754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=84.74  E-value=2.3  Score=29.09  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=28.4

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ++ |||.|..|+.+|..|...+-.++.++|.....
T Consensus         2 Vl-iiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           2 VL-LVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             EE-EECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            46 99999999999999998544589999987644

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=84.74  E-value=1.8  Score=32.17  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       143 ~v~-ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~  175 (300)
T TIGR01292       143 EVA-VVGGGDSAIEEALYLTR-IAKKVTLVHRRDK  175 (300)
T ss_pred             EEE-EECCChHHHHHHHHHHh-hcCEEEEEEeCcc
Confidence            577 99999999999999987 4788999998753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13748 putative mercuric reductase; Provisional

Probab=84.66  E-value=1.8  Score=36.11  Aligned_cols=31  Identities=13%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+|+.+
T Consensus       272 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtli~~~  302 (561)
T PRK13748        272 RLA-VIGSSVVALELAQAFAR-LGSKVTILARS  302 (561)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEecC
Confidence            467 99999999999999987 58899999875

>PRK06116 glutathione reductase; Validated

Probab=84.60  E-value=1.8  Score=35.05  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+++.++.
T Consensus       169 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  201 (450)
T PRK06116        169 RVA-VVGAGYIAVEFAGVLNG-LGSETHLFVRGDA  201 (450)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            567 99999999999999987 4889999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=83.99  E-value=1.7  Score=36.73  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+|+.++.
T Consensus       145 ~Vv-VIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVF-VIGGGFAAAEEAVFLTR-YASKVTVIVREPD  177 (555)
T ss_pred             EEE-EECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence            467 99999999999999987 4889999998763

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=83.97  E-value=1.7  Score=36.19  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=28.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       354 ~Vv-ViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~  386 (515)
T TIGR03140       354 DVA-VIGGGNSGIEAAIDLAG-IVRHVTVLEFADE  386 (515)
T ss_pred             EEE-EECCcHHHHHHHHHHHh-cCcEEEEEEeCCc
Confidence            577 99999999999999987 4778999997653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=83.88  E-value=1.9  Score=38.15  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus       142 ~vv-VVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~  174 (785)
T TIGR02374       142 KAA-VIGGGLLGLEAAVGLQN-LGMDVSVIHHAPG  174 (785)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCeEEEEccCCc
Confidence            467 99999999999999998 4889999998764

>KOG2852|consensus

Probab=83.65  E-value=0.63  Score=37.99  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc-----CCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA-----HWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~-----~~~VlvIEag~   74 (107)
                      -.++ |||||..|+..|+.|++.+     ...|.++|...
T Consensus        11 k~I~-IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~   49 (380)
T KOG2852|consen   11 KKIV-IVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE   49 (380)
T ss_pred             eEEE-EECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence            4667 9999999999999999864     36899999854

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.64  E-value=2.8  Score=32.62  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=27.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|.+|.+ .+.+|.+.+...
T Consensus         5 m~I~-iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIA-ILGAGAWGSTLAGLASA-NGHRVRVWSRRS   37 (308)
T ss_pred             CEEE-EECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            3466 99999999999999998 478999988754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.51  E-value=2.6  Score=32.33  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..|.. .+..|.+.+...
T Consensus         6 kI~-vIGaG~mG~~iA~~la~-~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVG-VIGAGQMGNGIAHVCAL-AGYDVLLNDVSA   37 (292)
T ss_pred             EEE-EECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            356 99999999999999998 588999998754

>PLN02507 glutathione reductase

Probab=83.50  E-value=2  Score=35.85  Aligned_cols=33  Identities=24%  Similarity=0.064  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.|++.++.
T Consensus       205 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  237 (499)
T PLN02507        205 RAV-VLGGGYIAVEFASIWRG-MGATVDLFFRKEL  237 (499)
T ss_pred             eEE-EECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence            567 99999999999999987 4889999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=83.44  E-value=2  Score=33.41  Aligned_cols=32  Identities=31%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|.+|.+ .+.+|.+++...
T Consensus         4 kI~-IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~   35 (341)
T PRK08229          4 RIC-VLGAGSIGCYLGGRLAA-AGADVTLIGRAR   35 (341)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence            466 99999999999999998 478899998753

>PRK14694 putative mercuric reductase; Provisional

Probab=83.36  E-value=2.3  Score=34.88  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=27.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.+
T Consensus       180 ~vv-ViG~G~~G~E~A~~l~~-~g~~Vtlv~~~  210 (468)
T PRK14694        180 RLL-VIGASVVALELAQAFAR-LGSRVTVLARS  210 (468)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEECC
Confidence            467 99999999999999987 57899999864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=83.34  E-value=2.5  Score=32.37  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|.+|.+ .+..|.+++..+
T Consensus         3 kI~-iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIA-VLGAGSWGTALAIVLAR-NGHDVTLWARDP   34 (325)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            466 99999999999999998 478898888753

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.32  E-value=2.2  Score=32.77  Aligned_cols=31  Identities=16%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||+|..|..+|..++. .+..|.++|..+
T Consensus         6 I~-ViGaG~mG~~iA~~la~-~G~~V~l~d~~~   36 (291)
T PRK06035          6 IG-VVGSGVMGQGIAQVFAR-TGYDVTIVDVSE   36 (291)
T ss_pred             EE-EECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            55 99999999999999987 588999998754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.26  E-value=3.1  Score=28.64  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      -.++ |+|+|-+|..++..|.+..-.+|.|+.+.
T Consensus        13 ~~vl-viGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   13 KRVL-VIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             SEEE-EESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CEEE-EECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4677 99999999999999998633448888764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=83.13  E-value=2.2  Score=32.19  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=27.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC---eEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW---SVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~---~VlvIEag~   74 (107)
                      -.++ |+|+|.+|..+|..|.+. +.   +|.+++..+
T Consensus        26 ~rvl-vlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIV-INGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CEEE-EECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            3677 999999999999999874 44   699998874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK10262 thioredoxin reductase; Provisional

Probab=82.90  E-value=2.3  Score=32.75  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||+|..|+-+|..|++. +.+|.+++.++
T Consensus       148 ~vv-VvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~  179 (321)
T PRK10262        148 KVA-VIGGGNTAVEEALYLSNI-ASEVHLIHRRD  179 (321)
T ss_pred             EEE-EECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence            567 999999999999999974 78999999875

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.56  E-value=2.8  Score=30.99  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|.|..|..+|.+|.+ .+.+|++.|...
T Consensus        30 ~v~-I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~   61 (200)
T cd01075          30 TVA-VQGLGKVGYKLAEHLLE-EGAKLIVADINE   61 (200)
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence            577 99999999999999998 588999887653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.40  E-value=2.3  Score=34.20  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=29.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -.++ |+|+|..|..+|..|.+ .+..|+++|..+.
T Consensus       232 ~~ii-IiG~G~~g~~l~~~L~~-~~~~v~vid~~~~  265 (453)
T PRK09496        232 KRVM-IVGGGNIGYYLAKLLEK-EGYSVKLIERDPE  265 (453)
T ss_pred             CEEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            3578 99999999999999998 5889999987653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=82.39  E-value=2.3  Score=37.25  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       314 ~Vv-IVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~  346 (659)
T PTZ00153        314 YMG-IVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQ  346 (659)
T ss_pred             ceE-EECCCHHHHHHHHHHHh-CCCeEEEEeccCc
Confidence            467 99999999999999987 4789999999764

>PRK14727 putative mercuric reductase; Provisional

Probab=82.34  E-value=2.5  Score=34.85  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+|+..
T Consensus       190 ~vv-VIGgG~iG~E~A~~l~~-~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLT-VIGSSVVAAEIAQAYAR-LGSRVTILARS  220 (479)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence            467 99999999999999987 58899999875

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.05  E-value=2.4  Score=33.90  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|..++. .+..|.+.|..+
T Consensus         9 ~Va-VIGaG~MG~giA~~~a~-aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFA-AIGSGVIGSGWVARALA-HGLDVVAWDPAP   40 (321)
T ss_pred             EEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            355 99999999999999987 699999998864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=81.96  E-value=2.9  Score=31.10  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||||..|..-+..|.+ .+.+|.|+....
T Consensus        11 ~vl-VvGgG~va~rk~~~Ll~-~ga~VtVvsp~~   42 (205)
T TIGR01470        11 AVL-VVGGGDVALRKARLLLK-AGAQLRVIAEEL   42 (205)
T ss_pred             eEE-EECcCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            567 99999999999999988 588999997643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.85  E-value=2.3  Score=32.97  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+. |||+|.-|..+|..+.. .+..|.++|..+..
T Consensus         7 ~V~-ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVG-VVGAGQMGAGIAEVCAR-AGVDVLVFETTEEL   40 (286)
T ss_pred             EEE-EEcccHHHHHHHHHHHh-CCCEEEEEECCHHH
Confidence            355 99999999999999987 58999999887543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.80  E-value=2.7  Score=32.41  Aligned_cols=32  Identities=19%  Similarity=0.426  Sum_probs=27.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..|.+ .+..|.+++...
T Consensus         6 ~I~-vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLA-IIGAGTMGSGIAALFAR-KGLQVVLIDVME   37 (311)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            355 99999999999999987 578999998644

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=81.64  E-value=4  Score=25.80  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .++ |+|.|..|..++..|.+....+|.+.+.
T Consensus        25 ~v~-i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          25 TVV-VLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             EEE-EECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            577 9999999999999999854678888876

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=81.51  E-value=2.2  Score=28.11  Aligned_cols=32  Identities=28%  Similarity=0.274  Sum_probs=27.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      -.++ |||+|..|..-+..|.+ .+.+|.|+...
T Consensus         8 ~~vl-VvGgG~va~~k~~~Ll~-~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVL-VVGGGPVAARKARLLLE-AGAKVTVISPE   39 (103)
T ss_dssp             -EEE-EEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred             CEEE-EECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence            3567 99999999999999987 57899998776

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=81.45  E-value=2.5  Score=35.19  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +++ |||+|..|+-+|..|+. .+.+|.+++.++.
T Consensus       353 ~Vv-VVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~  385 (517)
T PRK15317        353 RVA-VIGGGNSGVEAAIDLAG-IVKHVTVLEFAPE  385 (517)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCEEEEEEECcc
Confidence            577 99999999999999987 4789999988754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=81.44  E-value=2.8  Score=32.68  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|.+|.+ .+..|.+++...
T Consensus         6 ~I~-iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVA-VLGAGAWGTALAVLAAS-KGVPVRLWARRP   37 (328)
T ss_pred             eEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            466 99999999999999998 478999998853

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.44  E-value=2.6  Score=33.90  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+ .+..|.++|..+
T Consensus         2 ~vi-IiG~G~ig~~~a~~L~~-~g~~v~vid~~~   33 (453)
T PRK09496          2 KII-IVGAGQVGYTLAENLSG-ENNDVTVIDTDE   33 (453)
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence            467 99999999999999998 478999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=80.79  E-value=2.4  Score=31.01  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |+|.|..|+.+|..|++ .+.+|..+|..+
T Consensus         3 I~-ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~   33 (185)
T PF03721_consen    3 IA-VIGLGYVGLPLAAALAE-KGHQVIGVDIDE   33 (185)
T ss_dssp             EE-EE--STTHHHHHHHHHH-TTSEEEEE-S-H
T ss_pred             EE-EECCCcchHHHHHHHHh-CCCEEEEEeCCh
Confidence            45 89999999999999998 589999998865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.74  E-value=3.2  Score=33.47  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++ |+|+|..|.++|..|.+ .+.+|.+.|...
T Consensus         8 v~-v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~   38 (447)
T PRK02472          8 VL-VLGLAKSGYAAAKLLHK-LGANVTVNDGKP   38 (447)
T ss_pred             EE-EEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            56 99999999999999987 589999998654

>PLN02546 glutathione reductase

Probab=80.74  E-value=2.9  Score=35.74  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       254 ~V~-VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~  286 (558)
T PLN02546        254 KIA-IVGGGYIALEFAGIFNG-LKSDVHVFIRQKK  286 (558)
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCeEEEEEeccc
Confidence            567 99999999999999987 4789999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=80.68  E-value=2.7  Score=37.70  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus       147 ~vv-VIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~  179 (847)
T PRK14989        147 RGA-VVGGGLLGLEAAGALKN-LGVETHVIEFAPM  179 (847)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            356 99999999999999998 4889999998764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=80.66  E-value=3.7  Score=32.92  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..++ |||+|..|+.+|..|+..+--++.|+|....+
T Consensus        25 ~~Vl-IiG~GglGs~va~~La~aGvg~i~lvD~D~ve   60 (338)
T PRK12475         25 KHVL-IVGAGALGAANAEALVRAGIGKLTIADRDYVE   60 (338)
T ss_pred             CcEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            4688 99999999999999998533489999987644

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=80.23  E-value=3.1  Score=34.07  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+.+ .+.+|.+++.+..
T Consensus       274 ~Vv-VIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVV-VIGGGNTAVDSARTALR-LGAEVHCLYRRTR  306 (449)
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence            577 99999999999999987 4778999988753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		3e-05
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		3e-05
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		3e-05

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 58  RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQL--SKFDWQYKTEP 102
           RLSE    SV L+EAGPD+  V +V  L  W++L  S +DW Y  EP
Sbjct: 31  RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEP 77

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 58  RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQL--SKFDWQYKTEP 102
           RLSE    SV L+EAGPD+  V +V  L  W++L  S +DW Y  EP
Sbjct: 31  RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEP 77

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 58  RLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQL--SKFDWQYKTEP 102
           RLSE    SV L+EAGPD+  V +V  L  W++L  S +DW Y  EP
Sbjct: 31  RLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	6e-25
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	5e-24
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	5e-23
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	9e-22
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	5e-21
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-17
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-16
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	3e-12
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	3e-06
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	8e-06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-05

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score = 96.1 bits (240), Expect = 6e-25
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           GGG  G  VA++L+E     VL++E G    ++  + + P+    +  +  D  Y T P
Sbjct: 31  GGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP 89

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score = 93.8 bits (234), Expect = 5e-24
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           GGG+AG  VA RL+E  + +VL++EAG    ++      PS A  L+ SK+DW YKT  
Sbjct: 13  GGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM 71

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score = 91.1 bits (227), Expect = 5e-23
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEPT 103
           GGG  G   A+RL+E  + SVL++E+G    D   + +  +    +  S  D  Y+T   
Sbjct: 26  GGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL 85

Query: 104 G 104
            
Sbjct: 86  A 86

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score = 87.2 bits (217), Expect = 9e-22
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV--TDVPSLAAWLQL-SKFDWQYKTEP 102
           G G+AG VVA+RL+E    SVL+LEAG  +  V   + P LA  L   S FDW Y T  
Sbjct: 9   GAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTA 67

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score = 84.9 bits (211), Expect = 5e-21
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           GGG++G  +A+ LSE   + VL+LE G       +V +   ++   + +   KT  
Sbjct: 33  GGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPV 86

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score = 74.1 bits (183), Expect = 4e-17
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQL--SKFDWQYKTEP 102
           GGGSAG+++A+RLSE     VLL+EAG    +     P  AAW  L    +DW Y+TE 
Sbjct: 24  GGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNP--AAWPALQGRSYDWDYRTEA 80

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPS-LAAWLQLSKFDWQYKTEP 102
           GGGSAGA VA+RLSE    SV L+EAGP D      +       L  S +DW Y  EP
Sbjct: 20  GGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEP 77

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQ--LSKF-----DWQY 98
           G G  G + A RLSE     VLLLE G     +              L+KF         
Sbjct: 14  GAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESL 72

Query: 99  KTEP 102
            T+ 
Sbjct: 73  FTDS 76

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
          G G   AV A RL E A    L+LE G  
Sbjct: 12 GTGYGAAVSALRLGE-AGVQTLMLEMGQL 39

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK 105
           G G  G   A  L   A + V + + G  ++ +         ++  K   ++     G+
Sbjct: 53  GSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 110

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAA--WLQLSKFDWQYKTEPTG 104
           G G  GAV A RL++ A     ++E G   +       +         +  W        
Sbjct: 18  GSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQP 76

Query: 105 KQ 106
             
Sbjct: 77  VS 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.63
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.52
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.5
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.44
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.1
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.07
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.97
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.77
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.72
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.66
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.53
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.38
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.38
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.32
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.32
3dme_A	369	Conserved exported protein; structural genomics, P	98.21
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.2
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.19
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.14
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.13
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.12
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.1
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.08
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.08
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.06
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.05
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.03
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.02
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.99
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.99
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.98
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.97
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.97
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.96
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.92
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.91
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.91
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.91
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.9
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.9
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.89
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.89
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.88
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.88
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.88
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.88
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.87
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.86
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.86
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.85
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.85
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.85
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.85
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.85
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.84
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.84
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.84
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.84
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.84
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.83
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.83
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.83
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.83
3atr_A	453	Conserved archaeal protein; saturating double bond	97.82
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.81
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.81
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.8
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.8
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.8
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.8
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.8
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.8
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.79
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.79
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.79
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.78
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.78
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.78
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.78
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.78
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.77
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.77
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.77
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.75
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.75
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.75
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.74
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.74
4dna_A	463	Probable glutathione reductase; structural genomic	97.74
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.74
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.73
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.73
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.73
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.73
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.72
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.71
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.71
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.71
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.71
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.71
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.71
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.7
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.69
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.69
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.67
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.67
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.66
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.65
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.65
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.65
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.65
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.64
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.64
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.63
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.63
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.63
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.63
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.63
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.62
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.62
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.62
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.61
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.61
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.61
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.6
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.6
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.6
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.6
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.6
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.59
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.59
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.59
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.58
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.58
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.58
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.57
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.57
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.57
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.57
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.57
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.57
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.56
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.56
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.55
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.54
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.54
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.54
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.54
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.52
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.52
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.52
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.51
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.5
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.49
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.49
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.48
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.48
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.46
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.43
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.42
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.4
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.4
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.36
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.36
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.36
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.35
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.34
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.32
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.32
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.31
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.3
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.26
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.24
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.24
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.24
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.22
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.21
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.21
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.2
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.2
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.2
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.19
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.19
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.18
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.17
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.15
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.15
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.1
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.09
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.08
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.06
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.03
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.94
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.92
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.78
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.76
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.72
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.71
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.71
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.65
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.56
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.39
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.36
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.25
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.29
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.08
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.82
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.8
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	93.75
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.62
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	92.83
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.78
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.53
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	92.44
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.21
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	92.14
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.99
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.99
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	91.9
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.8
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.74
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	91.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.59
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	91.25
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	91.13
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.94
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	90.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.59
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	90.2
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.17
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	89.9
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	89.81
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	89.74
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	89.7
1ojt_A	482	Surface protein; redox-active center, glycolysis,	89.44
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	89.41
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.39
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	89.09
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	88.93
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	88.89
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	88.87
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	88.6
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	88.57
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.55
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	88.52
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	88.5
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	88.49
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	88.38
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	88.28
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	88.28
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	87.99
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	87.98
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	87.87
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	87.87
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.82
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	87.76
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.56
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	87.48
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	87.42
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.41
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	87.41
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.32
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	87.21
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	87.16
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	86.98
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	86.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	86.96
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	86.93
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.89
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	86.78
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	86.76
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	86.73
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	86.67
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.35
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	86.18
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.18
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	86.12
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	85.99
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	85.86
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	85.82
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	85.63
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	85.62
1fec_A	490	Trypanothione reductase; redox-active center, oxid	85.57
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	85.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	85.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	85.42
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	85.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	84.99
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	84.92
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	84.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	84.67
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	84.59
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	84.46
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	84.37
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.35
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	84.26
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	84.2
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	84.19
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	84.17
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	83.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	83.75
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	83.75
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	83.56
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	83.42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	83.15
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	82.98
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	82.84
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.81
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.76
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	82.61
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	82.42
3r9u_A	315	Thioredoxin reductase; structural genomics, center	82.15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	82.11
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	81.89
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	81.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	81.66
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	81.63
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	81.63
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	81.4
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	81.31
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	81.24
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	81.22
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	81.16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	80.9
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	80.84
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	80.75
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	80.71
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	80.68
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	80.44
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	80.37
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	80.28
4dna_A	463	Probable glutathione reductase; structural genomic	80.28
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	80.15
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	80.06

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.63  E-value=2.1e-16  Score=126.44  Aligned_cols=68  Identities=38%  Similarity=0.525  Sum_probs=59.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC-CcccchhhhhhccCCCccceeeeeeCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN-EVTDVPSLAAWLQLSKFDWQYKTEPTGKQ  106 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~-~~~~iP~~~~~l~~s~~dW~y~T~PQ~~~  106 (107)
                      .+|||| |||+|++|+++|.||+|+++++|||||+|+... +.+..|..+..+.++.+||+|.|+||+++
T Consensus        16 ~~yD~I-IVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~~   84 (526)
T 3t37_A           16 PNCDIV-IVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAGT   84 (526)
T ss_dssp             -CEEEE-EECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGGG
T ss_pred             CCeeEE-EECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCCC
Confidence            479999 999999999999999998899999999998654 55677877777778999999999999864

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.52  E-value=9.8e-15  Score=121.62  Aligned_cols=69  Identities=28%  Similarity=0.294  Sum_probs=57.9

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC---CCcccchhhhhhccCCCccceeeeeeCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE---NEVTDVPSLAAWLQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~---~~~~~iP~~~~~l~~s~~dW~y~T~PQ~~  105 (107)
                      ....|||| |||+|+|||++|.||+|+++.+|||||+|++.   .+.+.+|..+..+.++.+||+|.|+||+.
T Consensus        16 ~~~~yDyI-IVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~~   87 (583)
T 3qvp_A           16 SGRTVDYI-IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELAT   87 (583)
T ss_dssp             TTCEEEEE-EECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCTT
T ss_pred             CCCCccEE-EECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccCC
Confidence            44579999 99999999999999999889999999999843   23456676666666788999999999964

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.50  E-value=1e-14  Score=120.97  Aligned_cols=67  Identities=42%  Similarity=0.539  Sum_probs=58.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC--CCcccchhhhhhcc-CCCccceeeeeeCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE--NEVTDVPSLAAWLQ-LSKFDWQYKTEPTGKQ  106 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~--~~~~~iP~~~~~l~-~s~~dW~y~T~PQ~~~  106 (107)
                      +|||| |||+|+|||++|.||+++++.+|+|||+|+..  .+...+|..+..+. ++.+||+|.|+||+++
T Consensus         2 ~yD~I-IVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~   71 (566)
T 3fim_B            2 DFDYV-VVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGY   71 (566)
T ss_dssp             CEEEE-ESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGG
T ss_pred             CcCEE-EECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCCC
Confidence            59999 99999999999999999889999999999876  35677888766555 4889999999999753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.44  E-value=6.8e-14  Score=116.24  Aligned_cols=64  Identities=44%  Similarity=0.608  Sum_probs=55.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC---CCcccchhhhhhccCCCccceeeeee
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE---NEVTDVPSLAAWLQLSKFDWQYKTEP  102 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~---~~~~~iP~~~~~l~~s~~dW~y~T~P  102 (107)
                      ..|||| |||+|+|||++|.||+|+++.+|||||+|+..   .+.+.+|..+..+.++.+||+|.|+.
T Consensus         5 ~~yDyI-VVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~   71 (577)
T 3q9t_A            5 SHFDFV-IVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM   71 (577)
T ss_dssp             CEEEEE-EESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEE
T ss_pred             CcccEE-EECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEE
Confidence            469999 99999999999999999877999999999873   24577888877777889999999974

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.10  E-value=9.9e-11  Score=95.88  Aligned_cols=67  Identities=43%  Similarity=0.542  Sum_probs=55.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC--CcccchhhhhhccCCCccceeeeeeCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN--EVTDVPSLAAWLQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~--~~~~iP~~~~~l~~s~~dW~y~T~PQ~~  105 (107)
                      ..||++ |||+|.+|+++|.+|++.++.+|+|||+|....  ....+|..+..+.++.++|.|.++||++
T Consensus        12 ~~~d~~-ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~   80 (546)
T 2jbv_A           12 REFDYI-VVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN   80 (546)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC
Confidence            469999 999999999999999996689999999997654  3355666554444678999999999874

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.07  E-value=2.5e-10  Score=94.42  Aligned_cols=65  Identities=29%  Similarity=0.321  Sum_probs=54.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC--Cccc-chhhhhhccCCCccceeeeee
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN--EVTD-VPSLAAWLQLSKFDWQYKTEP  102 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~--~~~~-iP~~~~~l~~s~~dW~y~T~P  102 (107)
                      ...||+| |||+|.+|+++|.+|+++++.+|+|||+|....  +... +|..+..+..+.++|+|.|+|
T Consensus        22 ~~~~d~i-ivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p   89 (587)
T 1gpe_A           22 GKTYDYI-IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP   89 (587)
T ss_dssp             TCEEEEE-EECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC
T ss_pred             cccCCEE-EECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc
Confidence            4679999 999999999999999997799999999998663  3445 776665555678999999987

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.97  E-value=1.5e-10  Score=94.62  Aligned_cols=63  Identities=30%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC--Ccccchhhhhh-ccCCCccceeeeeeCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN--EVTDVPSLAAW-LQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~--~~~~iP~~~~~-l~~s~~dW~y~T~PQ~~  105 (107)
                      ...|||| |||+|+||+++|.||++  +.+|+|||+|+...  +....|..+.. +..  .+| |.++||++
T Consensus        24 ~~~yD~I-IVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~--~~~-~~t~~q~~   89 (536)
T 1ju2_A           24 EGSYDYV-IVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQ--EDD-GKTPVERF   89 (536)
T ss_dssp             EEEEEEE-EECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHS--CCC-SSSSEEEE
T ss_pred             cCcccEE-EECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhccC--CCc-CcCCCccc
Confidence            3569999 99999999999999999  78999999998652  33444433322 222  245 67777754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.77  E-value=9.2e-09  Score=83.30  Aligned_cols=63  Identities=22%  Similarity=0.242  Sum_probs=48.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchh---hhhhc-cCCCccceeeeeeC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPS---LAAWL-QLSKFDWQYKTEPT  103 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~---~~~~l-~~s~~dW~y~T~PQ  103 (107)
                      ...||++ |||+|.+|+++|.+|++ .+.+|+|||+|....  ..+|.   +.... ..+.++|.|.++||
T Consensus         9 ~~~~d~~-iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~--~~~p~~~~~~~~~~~~~~~~w~~~~~pq   75 (507)
T 1coy_A            9 GDRVPAL-VIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWD--TPGSDGKIFCGMLNPDKRSMWLADKTDQ   75 (507)
T ss_dssp             TCEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCCSC--SCCTTSCSSCCSSSCCTTSBBSCSBCCC
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEECCCCCC--CCCCcccccccccccccccccccccccc
Confidence            3569999 99999999999999999 699999999997543  12332   11111 24568999999998

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.72  E-value=1.4e-08  Score=82.03  Aligned_cols=63  Identities=24%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---CcccchhhhhhccCCCccceeeeeeC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSLAAWLQLSKFDWQYKTEPT  103 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~~~~l~~s~~dW~y~T~PQ  103 (107)
                      ..||++ |||+|.+|+++|.+|++ .+.+|+|||++....   +...++... ....+.++|+|.++||
T Consensus         4 ~~~d~~-iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~   69 (504)
T 1n4w_A            4 GYVPAV-VIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEA   69 (504)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCC
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccc
Confidence            458999 99999999999999999 689999999997432   222333221 1224568999999987

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.66  E-value=2.4e-08  Score=67.77  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++|++ |||||++|+++|..|++ .+.+|+|+|+++.
T Consensus         2 t~dV~-IIGaGpaGL~aA~~La~-~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIA-IIGTGIAGLSAAQALTA-AGHQVHLFDKSRG   36 (336)
T ss_dssp             CCCEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            48999 99999999999999998 5899999999754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.53  E-value=5.7e-08  Score=72.87  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=33.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++.||++ |||||++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 Me~yDVi-IVGaGpaGl~~A~~La~-~G~~V~v~Er~~~   38 (397)
T 3oz2_A            2 METYDVL-VVGGGPGGSTAARYAAK-YGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            4569999 99999999999999998 5999999999754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.38  E-value=3.2e-07  Score=74.33  Aligned_cols=38  Identities=42%  Similarity=0.530  Sum_probs=33.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...||+| |||+|++|+++|.+|++ .+.+|+|||+|...
T Consensus         5 ~~~~D~i-IvG~G~aG~~~A~~L~~-~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYI-IVGAGPGGIIAADRLSE-AGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCCC
T ss_pred             CCceeEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            3569999 99999999999999999 48999999999753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.38  E-value=2.9e-07  Score=72.33  Aligned_cols=40  Identities=20%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +...+|++ |||||.+|+++|.+|++..+.+|+|+|+.+..
T Consensus         7 p~~~~DVv-IIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A            7 PDISVDVL-VIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             CSEEEEEE-EECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCCCCCEE-EECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            34468999 99999999999999998668999999997654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.32  E-value=5.2e-07  Score=68.32  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             ccccCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          31 PIHSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        31 ~~~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |..+.....+|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         9 ~~~~~~~~~~dvv-IIGgG~~Gl~~A~~La~-~G~~V~llE~~~~   51 (382)
T 1ryi_A            9 ARIRAMKRHYEAV-VIGGGIIGSAIAYYLAK-ENKNTALFESGTM   51 (382)
T ss_dssp             -----CCSEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             HHhhccCCCCCEE-EECcCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            4445555679999 99999999999999998 5899999999754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.32  E-value=5.6e-07  Score=67.03  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+.+||++ |||+|+||+.+|.+|++ .+.+|+|||++.
T Consensus         2 n~M~~yDVv-IIGaGpAGlsAA~~lar-~g~~v~lie~~~   39 (304)
T 4fk1_A            2 NAMKYIDCA-VIGAGPAGLNASLVLGR-ARKQIALFDNNT   39 (304)
T ss_dssp             ----CEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CCCCCcCEE-EECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            346789999 99999999999999987 589999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.21  E-value=1.3e-06  Score=65.08  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dvv-IIG~G~~Gl~~A~~La~-~G~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCI-VIGAGVVGLAIARALAA-GGHEVLVAEAAE   37 (369)
T ss_dssp             CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            358999 99999999999999998 589999999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.20  E-value=1.2e-06  Score=64.42  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +.||++ |||+|+||+.+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~yDvv-IIG~GpAGl~AA~~la~-~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVV-IIGSGPAAHTAAIYLGR-SSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEE-EECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            469999 99999999999999998 589999999865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.19  E-value=1.7e-06  Score=64.13  Aligned_cols=36  Identities=28%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|.+|++ .+.+|+|||++..
T Consensus         5 ~~yDvv-IIG~GpAGl~aA~~l~~-~g~~V~liE~~~~   40 (312)
T 4gcm_A            5 IDFDIA-IIGAGPAGMTAAVYASR-ANLKTVMIERGIP   40 (312)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            359999 99999999999999998 5899999998653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.14  E-value=2e-06  Score=64.98  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~   76 (107)
                      .+|++ |||+|+||+++|.+|++ +.+++|+|+|++...
T Consensus        65 ~~DV~-IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           65 VSDVI-IVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEE-EECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEE-EECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            57999 99999999999999986 468999999997643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.12  E-value=2.4e-06  Score=65.91  Aligned_cols=34  Identities=41%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++|++ |||+|.+|+++|.+|++ .+.+|+|||+.+
T Consensus         1 ~~dVv-VIGaG~aGl~aA~~L~~-~G~~V~vlE~~~   34 (431)
T 3k7m_X            1 MYDAI-VVGGGFSGLKAARDLTN-AGKKVLLLEGGE   34 (431)
T ss_dssp             CEEEE-EECCBHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CCCEE-EECCcHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            37999 99999999999999998 489999999964

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.10  E-value=2.7e-06  Score=65.10  Aligned_cols=35  Identities=31%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         4 ~~DVv-IIGaG~~Gl~~A~~La~-~G~~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVV-VVGGGPVGLATAWQVAE-RGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             cCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            58999 99999999999999998 5899999999754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.08  E-value=3.8e-06  Score=65.21  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+. +|+|||++...
T Consensus         5 ~~~dVv-IIGgG~aGlsaA~~La~-~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            5 KSSSLL-IVGAGTWGTSTALHLAR-RGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TTSCEE-EECCSHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-cCCCcEEEEeCCCCC
Confidence            458999 99999999999999998 478 99999997653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.08  E-value=4e-06  Score=64.60  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....+|++ |||||.+|+++|..|++ .+.+|+|||+....
T Consensus        20 ~~~~~dV~-IVGaG~aGl~~A~~La~-~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           20 FQGHMKAI-VIGAGIGGLSAAVALKQ-SGIDCDVYEAVKEI   58 (407)
T ss_dssp             ---CCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSCC
T ss_pred             CCCCCEEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            44569999 99999999999999998 48999999998654

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.07  E-value=4.8e-06  Score=63.29  Aligned_cols=40  Identities=28%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHH-hcC-CeEEEEcCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSE-VAH-WSVLLLEAGPD   75 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~-~~~-~~VlvIEag~~   75 (107)
                      +.....+|++ |||+|.+|+++|.+|++ . + .+|+|||++..
T Consensus        16 ~~~~~~~dVv-IIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~~   57 (405)
T 2gag_B           16 PEPKKSYDAI-IVGGGGHGLATAYFLAKNH-GITNVAVLEKGWL   57 (405)
T ss_dssp             CCCCSEEEEE-EECCSHHHHHHHHHHHHHH-CCCCEEEECSSST
T ss_pred             CCCCCcCCEE-EECcCHHHHHHHHHHHHhc-CCCcEEEEeCCCC
Confidence            3345679999 99999999999999998 6 6 89999999763

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.06  E-value=5e-06  Score=62.98  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++|++ |||+|.+|+++|.+|++ .+.+|+|||+..
T Consensus         5 ~~~dVv-VIG~Gi~Gls~A~~La~-~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVV-VLGSGVIGLSSALILAR-KGYSVHILARDL   39 (363)
T ss_dssp             CSCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHh-CCCEEEEEeccC
Confidence            468999 99999999999999998 589999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.06  E-value=3.4e-06  Score=64.75  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|||+...
T Consensus         4 ~~~dVv-IIGgG~aGl~~A~~La~-~G~~V~v~E~~~~   39 (421)
T 3nix_A            4 EKVDVL-VIGAGPAGTVAASLVNK-SGFKVKIVEKQKF   39 (421)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             ccCcEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            358999 99999999999999998 5899999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.05  E-value=4.6e-06  Score=63.08  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         3 ~~dvv-IIGaG~~Gl~~A~~La~-~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVI-VVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             cCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            58999 99999999999999998 4899999999754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.04  E-value=5.4e-06  Score=62.84  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         4 ~~~dVv-IIGgGi~Gl~~A~~La~-~G~~V~lle~~~~   39 (382)
T 1y56_B            4 EKSEIV-VIGGGIVGVTIAHELAK-RGEEVTVIEKRFI   39 (382)
T ss_dssp             SBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            468999 99999999999999998 4899999999753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.03  E-value=4.3e-06  Score=63.03  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         2 ~~dvv-IIG~Gi~Gl~~A~~La~-~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLI-IIGSGSVGAAAGYYATR-AGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEE-ESCTTHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            48999 99999999999999998 4899999999764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.99  E-value=6.3e-06  Score=63.32  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.+|+++|.+|++ .+.+|+|||+++.
T Consensus         1 ~dVv-VIGaGiaGLsaA~~La~-~G~~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTV-VIGAGLGGLLSAARLSK-AGHEVEVFERLPI   34 (425)
T ss_dssp             CEEE-EECCBHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CcEE-EECCCHHHHHHHHHHHh-CCCceEEEeCCCC
Confidence            4788 99999999999999998 4899999999754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.99  E-value=7.3e-06  Score=64.97  Aligned_cols=38  Identities=21%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|+|+.+...
T Consensus        10 ~~~dvv-VIGaG~~GL~aA~~La~-~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           10 TDYDVI-VLGTGITECILSGLLSV-DGKKVLHIDKQDHYG   47 (453)
T ss_dssp             CBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             ccCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCCCCC
Confidence            468999 99999999999999998 589999999987543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.98  E-value=6.2e-06  Score=65.53  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +....+|++ |||||.+|+++|..|++ .+.+|+|||+.+.
T Consensus        23 M~~~~~dVi-IIGgG~AGl~aA~~La~-~G~~V~llEk~~~   61 (417)
T 3v76_A           23 MVAEKQDVV-IIGAGAAGMMCAIEAGK-RGRRVLVIDHARA   61 (417)
T ss_dssp             -----CCEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             ccCCCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            345578999 99999999999999998 4899999999864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.97  E-value=8.3e-06  Score=63.79  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|.+|++.++.+|+|+|+++..
T Consensus         6 ~~~~v~-IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLF-VVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEE-EECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            368999 99999999999999998547899999998643

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.97  E-value=6.8e-06  Score=61.33  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+.+|..|++.++.+|+|||+....
T Consensus        38 ~~~dVv-IIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVV-VVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEE-EECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEE-EECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            458999 99999999999999998448999999998643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.96  E-value=6.1e-06  Score=66.34  Aligned_cols=38  Identities=26%  Similarity=0.165  Sum_probs=33.6

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||+|.+|+++|.+|++ .+.+|+|||++...
T Consensus        39 ~~~~DVv-VVGaG~AGl~AA~~aa~-~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVV-VAGYGIAGVAASIEAAR-AGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3469999 99999999999999998 48999999998653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.92  E-value=1.1e-05  Score=58.45  Aligned_cols=34  Identities=26%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..||++ |||+|.+|+.+|..|++ .+.+|+|||++
T Consensus         2 ~~~dVv-VVGgG~aGl~aA~~la~-~g~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVL-IVGAGFSGAETAFWLAQ-KGVRVGLLTQS   35 (232)
T ss_dssp             CCCSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEecC
Confidence            358999 99999999999999998 48999999997

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.91  E-value=1e-05  Score=64.95  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+.+|..|++ .+.+|+|||++..
T Consensus         2 ~~~DVv-IIGgGi~G~~~A~~La~-~G~~V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLI-VIGGGINGAGIAADAAG-RGLSVLMLEAQDL   37 (501)
T ss_dssp             -CBSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHh-CCCCEEEEECCCC
Confidence            458999 99999999999999998 4899999999753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.91  E-value=9.8e-06  Score=59.90  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++|++ |||+|.+|+.+|..|++ .+.+|+|||+.+.
T Consensus         2 ~~~~vv-IIG~G~aGl~~A~~l~~-~g~~v~vie~~~~   37 (357)
T 4a9w_A            2 DSVDVV-VIGGGQSGLSAGYFLRR-SGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-SSCCEEEECCSSS
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            358999 99999999999999998 4899999999854

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.91  E-value=1.1e-05  Score=61.77  Aligned_cols=37  Identities=30%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|..|++ .+.+|+|||+....
T Consensus         5 ~~~dVv-IVGaG~aGl~~A~~L~~-~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVL-INGCGIGGAMLAYLLGR-QGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCCC
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            358999 99999999999999998 58999999997643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.90  E-value=1.2e-05  Score=62.19  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      |++ |||+|.+|+++|.+|++ .+.+|+|+|+.+.
T Consensus         2 dVv-VIGaGiaGLsaA~~La~-~G~~V~vlE~~~~   34 (421)
T 3nrn_A            2 RAV-VVGAGLGGLLAGAFLAR-NGHEIIVLEKSAM   34 (421)
T ss_dssp             EEE-EESCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            788 99999999999999998 4899999999754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.90  E-value=8.7e-06  Score=64.09  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|||+++.
T Consensus         3 ~~~dVi-IIGgG~aGl~aA~~la~-~G~~V~vlEk~~~   38 (401)
T 2gqf_A            3 QYSENI-IIGAGAAGLFCAAQLAK-LGKSVTVFDNGKK   38 (401)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEE-EECCcHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            358999 99999999999999998 4899999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.89  E-value=7e-06  Score=63.44  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcC------CeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAH------WSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~------~~VlvIEag~   74 (107)
                      ++|++ |||||.+|+++|.+|++. +      .+|+|+|+.+
T Consensus         5 ~~dVv-IIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            5 KKHVV-IIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASP   44 (470)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSS
T ss_pred             CCcEE-EECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCC
Confidence            57999 999999999999999985 5      8999999974

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.89  E-value=1e-05  Score=63.70  Aligned_cols=34  Identities=35%  Similarity=0.426  Sum_probs=29.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+++ |||+|.+|+++|.+|++ .+.+|+|+|+.+.
T Consensus         2 k~Vv-VIGaG~~GL~aA~~La~-~G~~V~VlEa~~~   35 (501)
T 4dgk_A            2 KPTT-VIGAGFGGLALAIRLQA-AGIPVLLLEQRDK   35 (501)
T ss_dssp             CCEE-EECCHHHHHHHHHHHHH-TTCCEEEECCC--
T ss_pred             CCEE-EECCcHHHHHHHHHHHH-CCCcEEEEccCCC
Confidence            3678 99999999999999998 5899999999654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.88  E-value=1e-05  Score=60.74  Aligned_cols=34  Identities=35%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+++|.+|++  +.+|+|||+++
T Consensus         8 ~~~dv~-IIGaGi~Gls~A~~La~--G~~V~vlE~~~   41 (381)
T 3nyc_A            8 IEADYL-VIGAGIAGASTGYWLSA--HGRVVVLEREA   41 (381)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHTT--TSCEEEECSSS
T ss_pred             CcCCEE-EECCcHHHHHHHHHHhC--CCCEEEEECCC
Confidence            357999 99999999999999993  89999999985

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.88  E-value=1.5e-05  Score=66.03  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +..+|++ |||||++|+++|..|++ .+.+|+|||+....
T Consensus        21 M~~~DVv-IVGgG~AGl~aA~~Lar-~G~~V~LiEr~~~~   58 (591)
T 3i3l_A           21 MTRSKVA-IIGGGPAGSVAGLTLHK-LGHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCSS
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHc-CCCCEEEEcCCCCC
Confidence            4468999 99999999999999998 48999999998543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.88  E-value=1.5e-05  Score=66.13  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||||.+|+++|.+|++ .+.+|+|||++.
T Consensus       271 ~~~DVv-IIGgGiaGlsaA~~La~-~G~~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAA-IIGGGIASALLSLALLR-RGWQVTLYCADE  305 (676)
T ss_dssp             SCCEEE-EECCSHHHHHHHHHHHT-TTCEEEEEESSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            458999 99999999999999998 589999999953

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.88  E-value=1.2e-05  Score=65.98  Aligned_cols=37  Identities=24%  Similarity=0.168  Sum_probs=33.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...||++ |||||.+|+.+|..|++ .+.+|+|||+++.
T Consensus        16 ~~~~DVv-VIGgGi~Gl~~A~~La~-~G~~V~LlEk~d~   52 (561)
T 3da1_A           16 EKQLDLL-VIGGGITGAGIALDAQV-RGIQTGLVEMNDF   52 (561)
T ss_dssp             TSCEEEE-EECCSHHHHHHHHHHHT-TTCCEEEEESSST
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            4569999 99999999999999998 5999999999853

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.87  E-value=1.5e-05  Score=60.94  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+....
T Consensus        10 ~~~dVv-IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAE-VAGGGFAGLTAAIALKQ-NGWDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSC
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHH-CCCCEEEEecCCCC
Confidence            458999 99999999999999998 58999999997654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.86  E-value=1.8e-05  Score=61.00  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|+|+.+.
T Consensus         4 ~~~~V~-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIA-VVGGSISGLTAALMLRD-AGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            457999 99999999999999998 5899999999764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.86  E-value=1.4e-05  Score=61.84  Aligned_cols=37  Identities=30%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~~   76 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+ |+|||+....
T Consensus         3 ~~~dVv-IVGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDIL-IAGAGIGGLSCALALHQ-AGIGKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEE-EECCSHHHHHHHHHHHH-TTCSEEEEEESSSSC
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHh-CCCCeEEEEECCCCc
Confidence            358999 99999999999999998 4899 9999997643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.85  E-value=1.6e-05  Score=61.22  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|||+.+.
T Consensus        25 ~~~dV~-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVA-IIGGGPVGLTMAKLLQQ-NGIDVSVYERDND   60 (398)
T ss_dssp             TTCEEE-EECCSHHHHHHHHHHHT-TTCEEEEEECSSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            458999 99999999999999998 5899999999754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.85  E-value=1.4e-05  Score=60.98  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||||.+|+++|..|++ .+.+|+|||+...
T Consensus         2 ~~dV~-IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVA-IIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (394)
T ss_dssp             BCSEE-EECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CccEE-EECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            47999 99999999999999998 4899999999763

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.85  E-value=1.7e-05  Score=58.97  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|..|.+ .+.+|+|||+.+.
T Consensus         4 ~~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVL-IVGAGPTGLFAGFYVGM-RGLSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcCcEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            458999 99999999999999998 5899999999753

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.85  E-value=1e-05  Score=63.10  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEa   72 (107)
                      ..+|++ |||+|.+|+++|.+|++. + .+|+|||+
T Consensus        22 ~~~dVv-IIGgGiaGls~A~~La~~-G~~~V~vlE~   55 (448)
T 3axb_A           22 PRFDYV-VVGAGVVGLAAAYYLKVW-SGGSVLVVDA   55 (448)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHHH-HCSCEEEEES
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHhC-CCCcEEEEcc
Confidence            569999 999999999999999985 5 89999999

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.85  E-value=1.3e-05  Score=63.36  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+||++ |||+|++|+.+|.+|++. +.+|+|||++.
T Consensus         2 ~~~DVv-VIGgG~aGl~aA~~la~~-G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVI-VIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (476)
T ss_dssp             CCCSEE-EECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            469999 999999999999999984 89999999985

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.84  E-value=1.3e-05  Score=59.13  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...+|++ |||+|.+|+.+|..|++ .+.+|+|||+.+
T Consensus        20 ~~~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVT-IIGSGPAAHTAAIYLAR-AEIKPILYEGMM   55 (338)
T ss_dssp             -CEEEEE-EECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            3468999 99999999999999998 489999999954

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.84  E-value=1.9e-05  Score=63.72  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +.....+|++ |||+|++|+++|..|++ .+.+|+|||+....
T Consensus         6 ~~~~~~~dVl-IVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            6 HHHRSDAAVI-VVGAGPAGMMLAGELRL-AGVEVVVLERLVER   46 (500)
T ss_dssp             --CCSBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCCC-
T ss_pred             CCccCCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            4556679999 99999999999999998 58999999997643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.84  E-value=1.6e-05  Score=62.80  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|..|++ .+.+|+|||+.+.
T Consensus        25 ~~~dVv-IIGgG~aGl~aA~~la~-~G~~V~llEk~~~   60 (447)
T 2i0z_A           25 MHYDVI-VIGGGPSGLMAAIGAAE-EGANVLLLDKGNK   60 (447)
T ss_dssp             CCCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEE-EECCcHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            358999 99999999999999998 4899999999764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.84  E-value=1.9e-05  Score=57.14  Aligned_cols=34  Identities=35%  Similarity=0.435  Sum_probs=30.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++|++ |||+|.+|+.+|..|.+ .+.+|+|||++.
T Consensus         2 ~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVI-IIGGSYAGLSAALQLGR-ARKNILLVDAGE   35 (297)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             CCCEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            37999 99999999999999998 478999999864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.84  E-value=1.5e-05  Score=60.01  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=30.2

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc-----CCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA-----HWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~-----~~~VlvIEag~   74 (107)
                      .|++ |||+|.+|+++|..|++..     +.+|+|||++.
T Consensus         1 mdVv-IIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVV-VIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEE-EECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            3889 9999999999999999863     48999999975

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.83  E-value=1.3e-05  Score=64.39  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|||+....
T Consensus         6 ~~~dVv-IVGgG~aGl~aA~~La~-~G~~V~liE~~~~~   42 (512)
T 3e1t_A            6 EVFDLI-VIGGGPGGSTLASFVAM-RGHRVLLLEREAFP   42 (512)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECSSCSS
T ss_pred             ccCCEE-EECcCHHHHHHHHHHHh-CCCCEEEEccCCCC
Confidence            458999 99999999999999998 58999999998643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.83  E-value=1.4e-05  Score=62.06  Aligned_cols=37  Identities=32%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|..|++. ++.+|+|||++..
T Consensus        35 ~~~dVv-IIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIV-VIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEE-EECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            458999 999999999999999983 2899999999754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.83  E-value=1.6e-05  Score=61.62  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|.+|++. +.+|+|+|+++.
T Consensus         1 ~~~v~-iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~   35 (367)
T 1i8t_A            1 MYDYI-IVGSGLFGAVCANELKKL-NKKVLVIEKRNH   35 (367)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHGGG-TCCEEEECSSSS
T ss_pred             CCCEE-EECcCHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence            37899 999999999999999984 899999999754

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.83  E-value=1.4e-05  Score=63.92  Aligned_cols=36  Identities=31%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+++|.+|.+ .+ .+|+|+|+...
T Consensus         7 ~~~~Vv-IIGaG~aGL~AA~~L~~-~G~~~V~VlEa~~r   43 (516)
T 1rsg_A            7 AKKKVI-IIGAGIAGLKAASTLHQ-NGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEE-EECCBHHHHHHHHHHHH-TTCCSEEEECSSSS
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence            457999 99999999999999998 47 99999999764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.82  E-value=1.2e-05  Score=63.32  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||||++|+++|..|++ .+.+|+|||+...
T Consensus         6 ~~dVv-IVGaG~aGl~aA~~La~-~G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVL-IIGGGFAGSSAAYQLSR-RGLKILLVDSKPW   40 (453)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHSS-SSCCEEEECSSCG
T ss_pred             cCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            58999 99999999999999998 5899999999764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.81  E-value=2e-05  Score=62.13  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=33.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|.+|+.+|..|++. ++.+|+|||++..
T Consensus        78 ~~~DVv-IVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIV-IVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEE-EECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEE-EECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            358999 999999999999999985 5899999999764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.81  E-value=2.2e-05  Score=57.32  Aligned_cols=33  Identities=18%  Similarity=0.010  Sum_probs=30.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .+|++ |||+|.+|+.+|.+|.+ .+.+|+|||+.
T Consensus        15 ~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~   47 (323)
T 3f8d_A           15 KFDVI-IVGLGPAAYGAALYSAR-YMLKTLVIGET   47 (323)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             ccCEE-EECccHHHHHHHHHHHH-CCCcEEEEecc
Confidence            58999 99999999999999998 48999999996

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.80  E-value=2.1e-05  Score=62.76  Aligned_cols=36  Identities=33%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|.+ .+.+|+|+|+.+.
T Consensus         3 ~~~~vv-IIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~   38 (520)
T 1s3e_A            3 NKCDVV-VVGGGISGMAAAKLLHD-SGLNVVVLEARDR   38 (520)
T ss_dssp             CBCSEE-EECCBHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCceEE-EECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            357999 99999999999999998 4889999999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.80  E-value=2.1e-05  Score=59.00  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+.+|.+|.+ .+. +|+|||+..
T Consensus         3 ~~~~vv-IIGaG~aGl~aA~~l~~-~g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVA-IIGAGAAGIGMAITLKD-FGITDVIILEKGT   38 (369)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCCEEEECSSS
T ss_pred             ccCcEE-EECcCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            358999 99999999999999998 477 999999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.80  E-value=1.9e-05  Score=61.58  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~~   75 (107)
                      +|++ |||||.+|+++|.+|++. +.  +|+|+|+.+.
T Consensus         3 ~dVv-VIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~   38 (477)
T 3nks_A            3 RTVV-VLGGGISGLAASYHLSRA-PCPPKVVLVESSER   38 (477)
T ss_dssp             CEEE-EECCBHHHHHHHHHHHTS-SSCCEEEEECSSSS
T ss_pred             ceEE-EECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCC
Confidence            6899 999999999999999984 77  9999999653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.80  E-value=2.1e-05  Score=63.15  Aligned_cols=37  Identities=27%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||||.+|+++|..|++ .+.+|+|||+....
T Consensus         4 ~~~dVl-IVGaG~aGl~~A~~La~-~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVL-VVGAGLGGLSTAMFLAR-QGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECSSSSC
T ss_pred             ccCcEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            458999 99999999999999998 48999999998643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.80  E-value=2.1e-05  Score=65.53  Aligned_cols=36  Identities=28%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...+|++ |||||.+|+++|.+|++ .+.+|+|||++.
T Consensus       262 ~~~~DVv-IIGgGiaGlsaA~~La~-~G~~V~vlEk~~  297 (689)
T 3pvc_A          262 TRCDDIA-IIGGGIVSALTALALQR-RGAVVTLYCADA  297 (689)
T ss_dssp             SCCSSEE-EECCSHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred             CCCCCEE-EECCcHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            3458999 99999999999999998 589999999964

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.80  E-value=1.9e-05  Score=62.87  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..||++ |||+|++|+.+|.+|++ .+.+|+|||+.+.
T Consensus        23 m~~~dVv-VIGgG~aGl~aA~~la~-~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLI-VIGSGPGGYVCAIKAAQ-LGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             cccCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            3469999 99999999999999998 5899999998643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.79  E-value=2.2e-05  Score=62.45  Aligned_cols=35  Identities=23%  Similarity=0.076  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|+++|.+|++ .+.+|+|||++.
T Consensus        25 ~~~DVv-VIGgG~aGl~aA~~la~-~G~~V~liEk~~   59 (484)
T 3o0h_A           25 FDFDLF-VIGSGSGGVRAARLAGA-LGKRVAIAEEYR   59 (484)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHh-CcCEEEEEeCCC
Confidence            369999 99999999999999998 589999999953

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.79  E-value=2.5e-05  Score=58.95  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..+|++ |||+|.+|+.+|..|.+ .+.+|+|||+.+.
T Consensus        12 ~~~~dvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   48 (360)
T 3ab1_A           12 HDMRDLT-IIGGGPTGIFAAFQCGM-NNISCRIIESMPQ   48 (360)
T ss_dssp             -CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            3468999 99999999999999998 5899999999753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.79  E-value=2.2e-05  Score=57.67  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|..|.+ .+.+|+|||+.+.
T Consensus         7 ~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDIT-IIGGGPVGLFTAFYGGM-RQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cceEE-EECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            47999 99999999999999998 5899999999763

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.78  E-value=2.8e-05  Score=59.91  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|++. + .+|+|+|+.+.
T Consensus         5 ~~~~v~-IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~   41 (424)
T 2b9w_A            5 KDSRIA-IIGAGPAGLAAGMYLEQA-GFHDYTILERTDH   41 (424)
T ss_dssp             TTCCEE-EECCSHHHHHHHHHHHHT-TCCCEEEECSSSC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHhC-CCCcEEEEECCCC
Confidence            457999 999999999999999984 7 89999999654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.78  E-value=1.7e-05  Score=59.64  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.+|+++|..|++.  .+.+|+|+|++..
T Consensus         2 ~dV~-IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVL-IVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEE-EECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            5899 999999999999999872  4789999999753

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.78  E-value=1.9e-05  Score=61.40  Aligned_cols=36  Identities=31%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|.+ .+.+|+|+|+...
T Consensus         4 ~~~~v~-iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~   39 (453)
T 2yg5_A            4 LQRDVA-IVGAGPSGLAAATALRK-AGLSVAVIEARDR   39 (453)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEECCCC
Confidence            357999 99999999999999998 4899999999754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.78  E-value=1.8e-05  Score=65.13  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh---c--CCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV---A--HWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~---~--~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|.+|++.   +  +.+|+|||++..
T Consensus        35 ~~DVv-IVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~   75 (584)
T 2gmh_A           35 EADVV-IVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   75 (584)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CCCEE-EECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCC
Confidence            58999 999999999999999984   1  899999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.78  E-value=2.9e-05  Score=61.09  Aligned_cols=37  Identities=35%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus        10 ~~~~v~-IIGaG~aGl~aA~~L~~-~g~~v~v~E~~~~~   46 (489)
T 2jae_A           10 GSHSVV-VLGGGPAGLCSAFELQK-AGYKVTVLEARTRP   46 (489)
T ss_dssp             SCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCCEEEEeccCCC
Confidence            357999 99999999999999998 47899999997643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.77  E-value=2.1e-05  Score=64.01  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|..|++ .+.+|+|||+.+.
T Consensus       125 ~~~DVv-VVGaG~aGl~aA~~la~-~G~~V~vlEk~~~  160 (571)
T 1y0p_A          125 DTVDVV-VVGSGGAGFSAAISATD-SGAKVILIEKEPV  160 (571)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            368999 99999999999999998 4899999999764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.77  E-value=2.5e-05  Score=64.17  Aligned_cols=36  Identities=28%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+.+|..|++ .+.+|+|||++..
T Consensus        31 ~~~DVv-VIGgGi~G~~~A~~La~-rG~~V~LlE~~~~   66 (571)
T 2rgh_A           31 EELDLL-IIGGGITGAGVAVQAAA-SGIKTGLIEMQDF   66 (571)
T ss_dssp             SCBSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            469999 99999999999999998 4899999999753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.77  E-value=2.7e-05  Score=61.00  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC--CeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH--WSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~--~~VlvIEag~~   75 (107)
                      .++|++ |||+|.+|+++|.+|++. +  .+|+|+|+.+.
T Consensus         3 ~~~~v~-IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~   40 (475)
T 3lov_A            3 SSKRLV-IVGGGITGLAAAYYAERA-FPDLNITLLEAGER   40 (475)
T ss_dssp             CSCEEE-EECCBHHHHHHHHHHHHH-CTTSEEEEECSSSS
T ss_pred             CcccEE-EECCCHHHHHHHHHHHHh-CCCCCEEEEECCCC
Confidence            357999 999999999999999985 5  99999999643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.76  E-value=2.7e-05  Score=57.66  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+..
T Consensus        15 ~~~dvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~   49 (319)
T 3cty_A           15 RDFDVV-IVGAGAAGFSAAVYAAR-SGFSVAILDKAV   49 (319)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CCCcEE-EECcCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence            458999 99999999999999998 489999999953

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.75  E-value=3.5e-05  Score=58.09  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..++ |||||++|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 m~V~-IVGaGpaGl~~A~~L~~-~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVG-IIGAGIGGTCLAHGLRK-HGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCSS
T ss_pred             CEEE-EECcCHHHHHHHHHHHh-CCCCEEEEecCCCC
Confidence            3678 99999999999999998 58999999987643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.75  E-value=2.3e-05  Score=61.24  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+++|.+|++ .+.+|+|+|+...
T Consensus        14 ~~~~~v~-iiG~G~~Gl~aa~~l~~-~g~~v~v~E~~~~   50 (478)
T 2ivd_A           14 TTGMNVA-VVGGGISGLAVAHHLRS-RGTDAVLLESSAR   50 (478)
T ss_dssp             ---CCEE-EECCBHHHHHHHHHHHT-TTCCEEEECSSSS
T ss_pred             CCCCcEE-EECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            3468999 99999999999999998 4889999999764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.75  E-value=2.3e-05  Score=63.89  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=33.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...+|++ |||+|.+|+++|..|++. +.+|+|||+.+..
T Consensus       119 ~~~~DVv-VVG~G~aGl~aA~~la~~-G~~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVL-VVGAGSAGFNASLAAKKA-GANVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEE-EECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            3568999 999999999999999984 8999999997643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.74  E-value=4e-05  Score=60.43  Aligned_cols=35  Identities=34%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|.+|.+ .+.+|+|+|+.+.
T Consensus        39 ~~~v~-iiGaG~aGl~aA~~l~~-~g~~v~v~E~~~~   73 (495)
T 2vvm_A           39 PWDVI-VIGGGYCGLTATRDLTV-AGFKTLLLEARDR   73 (495)
T ss_dssp             CEEEE-EECCBHHHHHHHHHHHH-TTCCEEEECSSSB
T ss_pred             CCCEE-EECCcHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            38999 99999999999999998 4899999999753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.74  E-value=2.4e-05  Score=64.66  Aligned_cols=36  Identities=25%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+...
T Consensus         6 ~~~DVv-VVGaG~AGl~AA~~la~-~G~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAV-VIGAGGAGMRAALQISQ-SGQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             ccCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            468999 99999999999999998 4899999999753

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.74  E-value=2.9e-05  Score=61.42  Aligned_cols=35  Identities=23%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         4 ~~~DVv-VIGaG~aGl~aA~~la~-~G~~V~liEk~~   38 (463)
T 4dna_A            4 FDYDLF-VIGGGSGGVRSGRLAAA-LGKKVAIAEEFR   38 (463)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             CCCcEE-EECcCHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence            358999 99999999999999998 489999999943

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.74  E-value=3.2e-05  Score=62.38  Aligned_cols=40  Identities=25%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .....+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         8 ~~~~~~dVl-IVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   47 (499)
T 2qa2_A            8 HHRSDASVI-VVGAGPAGLMLAGELRL-GGVDVMVLEQLPQR   47 (499)
T ss_dssp             ---CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCSSC
T ss_pred             ccCCCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            344678999 99999999999999998 58999999997643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.73  E-value=3.5e-05  Score=61.35  Aligned_cols=37  Identities=32%  Similarity=0.476  Sum_probs=33.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+++|.+|++. +.+|+|||+++.
T Consensus        27 ~~~~dv~-IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~   63 (397)
T 3hdq_A           27 SKGFDYL-IVGAGFAGSVLAERLASS-GQRVLIVDRRPH   63 (397)
T ss_dssp             CCCEEEE-EECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEE-EECccHHHHHHHHHHHHC-CCceEEEeccCC
Confidence            4569999 999999999999999984 899999999754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.73  E-value=3.1e-05  Score=63.25  Aligned_cols=39  Identities=23%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ....||++ |||+|.+|+++|.+|++ .+.+|+|||+++..
T Consensus        17 ~~~~~dv~-iiG~G~~g~~~a~~l~~-~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVI-ILGTGLKECILSGLLSH-YGKKILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             ccccCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeccCCC
Confidence            34579999 99999999999999998 58999999998654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.73  E-value=3e-05  Score=64.13  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|++|+.+|..|++ .+.+|+|||++..
T Consensus       105 ~~~~DVV-IVGgGpaGL~aA~~La~-~G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPI-VIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCE-EECCSHHHHHHHHHHHH-TTCCCEEECSSCC
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEEccCc
Confidence            3458999 99999999999999998 5899999999853

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.73  E-value=3.7e-05  Score=61.94  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||||.+|+++|..|++.  .+.+|+|||+....
T Consensus         4 ~~~dVv-IVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            4 PIKNIV-IVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             BCCEEE-EECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            357999 999999999999999982  48999999996543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.72  E-value=4.2e-05  Score=60.76  Aligned_cols=34  Identities=29%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ...||++ |||+|++|+++|.+|++ .+.+|+|||+
T Consensus         7 ~~~~Dvv-VIGgG~aGl~aA~~la~-~G~~V~liEk   40 (483)
T 3dgh_A            7 SYDYDLI-VIGGGSAGLACAKEAVL-NGARVACLDF   40 (483)
T ss_dssp             CCSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCEEEEEEe
Confidence            3569999 99999999999999998 5899999995

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.71  E-value=4.1e-05  Score=52.57  Aligned_cols=33  Identities=36%  Similarity=0.505  Sum_probs=30.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ||++ |||+|.+|+.+|..|++ .+.+|.|||+++
T Consensus         2 ~~vv-IIGgG~~Gl~~A~~l~~-~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVI-VVGGGPSGLSAALFLAR-AGLKVLVLDGGR   34 (180)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CeEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            7899 99999999999999998 488999999976

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.71  E-value=3.4e-05  Score=57.28  Aligned_cols=35  Identities=37%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|..|.+ .+.+|+|||++.
T Consensus         7 ~~~dvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~   41 (325)
T 2q7v_A            7 HDYDVV-IIGGGPAGLTAAIYTGR-AQLSTLILEKGM   41 (325)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence            358999 99999999999999998 489999999983

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.71  E-value=2.8e-05  Score=61.60  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .||++ |||+|++|+.+|.+|++ .+.+|+|||+.+
T Consensus         4 ~~DVv-VIGgG~aGl~aA~~l~~-~G~~V~liEk~~   37 (466)
T 3l8k_A            4 KYDVV-VIGAGGAGYHGAFRLAK-AKYNVLMADPKG   37 (466)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred             cceEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCC
Confidence            58999 99999999999999998 589999999654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.71  E-value=3.4e-05  Score=56.68  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=30.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~   74 (107)
                      ||++ |||+|.+|+.+|..|.+ .+. +|+|||+..
T Consensus         2 ~dvv-IIG~G~aGl~aA~~l~~-~g~~~v~lie~~~   35 (311)
T 2q0l_A            2 IDCA-IIGGGPAGLSAGLYATR-GGVKNAVLFEKGM   35 (311)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHH-TTCSSEEEECSSS
T ss_pred             ceEE-EECccHHHHHHHHHHHH-CCCCcEEEEcCCC
Confidence            7999 99999999999999998 488 999999963

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.71  E-value=2.2e-05  Score=62.96  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .||++ |||+|++|+.+|.+|++ .+.+|+|||++..
T Consensus         8 ~~Dvv-VIGgG~aGl~aA~~la~-~G~~V~liE~~~~   42 (492)
T 3ic9_A            8 NVDVA-IIGTGTAGMGAYRAAKK-HTDKVVLIEGGAY   42 (492)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHT-TCSCEEEEESSCS
T ss_pred             CCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            58999 99999999999999998 5899999999753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.71  E-value=2.7e-05  Score=61.67  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus        18 ~~~~dVv-IIGgG~aGl~aA~~la~-~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYL-VIGGGSGGLASARRAAE-LGARAAVVESHK   53 (478)
T ss_dssp             EEECSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            3469999 99999999999999998 489999999764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.70  E-value=3.2e-05  Score=60.79  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||||++|+++|..|++ .+.+|+|||+..
T Consensus        22 ~~~Vi-IVGaGpaGl~~A~~La~-~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIG-IVGAGTAGLHLGLFLRQ-HDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEE-EECCHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred             CCCEE-EECCcHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence            47999 99999999999999998 589999999976

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=3.5e-05  Score=61.39  Aligned_cols=35  Identities=34%  Similarity=0.463  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus        10 ~~~dVv-VIGgG~aGl~aA~~l~~-~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYL-VIGGGSGGVASARRAAS-YGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TSCCEEEEESSC
T ss_pred             ccCCEE-EEcCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            468999 99999999999999998 589999999974

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.69  E-value=2.9e-05  Score=61.79  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~   75 (107)
                      .+|++ |||||.+|+++|..|++.  .+.+|+|||+...
T Consensus         2 ~~dVv-IVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVV-IVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEE-EECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEE-EECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            36899 999999999999999982  4789999999754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.67  E-value=4.4e-05  Score=62.81  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|..|++ .+.+|+|||+....
T Consensus        48 ~~~DVv-IVGaG~aGL~~A~~La~-~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           48 LTTDVV-VVGGGPVGLMLAGELRA-GGVGALVLEKLVEP   84 (570)
T ss_dssp             ---CEE-EECCSHHHHHHHHHHHH-TTCCEEEEBSCSSC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            458999 99999999999999998 58999999997654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.67  E-value=3.2e-05  Score=63.20  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|.+|++  +.+|+|||++..
T Consensus         7 ~~~DVv-VVG~G~AGl~aAl~la~--G~~V~vlEk~~~   41 (540)
T 1chu_A            7 HSCDVL-IIGSGAAGLSLALRLAD--QHQVIVLSKGPV   41 (540)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHTT--TSCEEEECSSCT
T ss_pred             CCCCEE-EECccHHHHHHHHHHhc--CCcEEEEECCCC
Confidence            458999 99999999999999997  899999999864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.66  E-value=4.5e-05  Score=60.12  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|+|+.+.
T Consensus        12 ~~~~v~-iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~   47 (504)
T 1sez_A           12 SAKRVA-VIGAGVSGLAAAYKLKI-HGLNVTVFEAEGK   47 (504)
T ss_dssp             -CCEEE-EECCSHHHHHHHHHHHT-TSCEEEEECSSSS
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHH-CCCcEEEEEeCCC
Confidence            358999 99999999999999998 4899999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.65  E-value=6.8e-05  Score=60.85  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||||++|+++|..|++.  .+.+|+|||+....
T Consensus        24 ~~~dVv-IVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   63 (550)
T 2e4g_A           24 KIDKIL-IVGGGTAGWMAASYLGKALQGTADITLLQAPDIP   63 (550)
T ss_dssp             CCCEEE-EECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Confidence            468999 999999999999999983  48999999997543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.65  E-value=5.9e-05  Score=60.88  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|+.+|.+|++ .+.+|+|||+.+
T Consensus        31 ~~~DVv-VIGgGpaGl~aA~~la~-~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLI-IIGGGSGGLAAAKEAAQ-YGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECCCC
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            469999 99999999999999998 489999999854

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.65  E-value=4.1e-05  Score=64.50  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-----cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-----AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-----~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.||+.+|.+|++.     ++.+|+|||++...
T Consensus        21 ~~~DVv-VVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLL-MVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEE-EECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            468999 999999999999999985     38999999997643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.65  E-value=4.8e-05  Score=58.34  Aligned_cols=35  Identities=29%  Similarity=0.602  Sum_probs=30.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      |++ |||||.+|+++|..|++. ++.+|+|+|+.+..
T Consensus         2 dV~-IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KIL-VIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEE-EECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            788 999999999999999984 38999999997643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.64  E-value=3.9e-05  Score=55.93  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEE-EcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLL-LEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~Vlv-IEag   73 (107)
                      .++|++ |||+|.+|+.+|..|.+. +.+|+| +|+.
T Consensus         3 ~~~~vv-IIG~G~aGl~aA~~l~~~-g~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVA-IIGGGPAGLSAGLYATRG-GLKNVVMFEKG   37 (315)
T ss_dssp             SCEEEE-EECCSHHHHHHHHHHHHH-TCSCEEEECSS
T ss_pred             CCceEE-EECCCHHHHHHHHHHHHC-CCCeEEEEeCC
Confidence            468999 999999999999999984 788888 9984

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.64  E-value=5.1e-05  Score=59.96  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=31.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||+|++|+.+|.+|++ .+.+|+|||+++.
T Consensus         2 ~~dvv-IIGgG~aGl~aA~~l~~-~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVV-VIGGGPGGYVASIKAAQ-LGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            48999 99999999999999998 4899999999853

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.63  E-value=5.2e-05  Score=60.24  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dVv-IIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLI-AIGGGSGGLAVAEKAAA-FGKRVALIESKA   37 (463)
T ss_dssp             CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCcEE-EECCCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            358999 99999999999999998 589999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.63  E-value=3e-05  Score=57.10  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..+|++ |||+|.+|+.+|..|.+ .+.+|+|||+.
T Consensus         4 ~~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLL-ILGSGPAGYTAAVYAAR-ANLQPVLITGM   37 (320)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHT-TTCCCEEECCS
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEccC
Confidence            458999 99999999999999998 48999999964

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.63  E-value=4.2e-05  Score=60.34  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||+|++|+.+|.+|++ .+.+|+|||+..
T Consensus         3 ~~dvv-IIGaG~aGl~aA~~l~~-~G~~V~liE~~~   36 (464)
T 2a8x_A            3 HYDVV-VLGAGPGGYVAAIRAAQ-LGLSTAIVEPKY   36 (464)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSC
T ss_pred             cCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            58999 99999999999999998 489999999973

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.63  E-value=5e-05  Score=63.22  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..||++ |||+|.+|+.+|..|++ .+.+|+|||++...
T Consensus        45 ~~~dvv-IIG~G~aGl~aA~~l~~-~G~~V~liE~~~~~   81 (623)
T 3pl8_A           45 IKYDVV-IVGSGPIGCTYARELVG-AGYKVAMFDIGEID   81 (623)
T ss_dssp             -CEEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCCC
T ss_pred             ccCCEE-EECCcHHHHHHHHHHHh-CCCcEEEEeccCCC
Confidence            468999 99999999999999998 58999999997643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.63  E-value=6e-05  Score=59.50  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|.+|+.+|.+|.+ .+.+|+|||++.
T Consensus         3 ~~~dvv-IIGgG~aGl~aA~~l~~-~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVA-VIGSGGAAMAAALKAVE-QGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            358999 99999999999999998 489999999874

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.62  E-value=5.5e-05  Score=62.72  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|++|+++|..|++..+.+|+|||+.+..
T Consensus        31 ~~~dVl-IVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVL-IVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEE-EECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCCcEE-EECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            468999 99999999999999997138999999997643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.62  E-value=6.5e-05  Score=59.27  Aligned_cols=37  Identities=22%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus         5 ~~~~v~-iiG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            5 EEYDVI-VLGTGLTECILSGIMSV-NGKKVLHMDRNPYY   41 (433)
T ss_dssp             SBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCCc
Confidence            458999 99999999999999998 58999999997654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.62  E-value=4.9e-05  Score=60.56  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..||++ |||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus         5 ~~~Dvv-VIG~G~aGl~aA~~la~-~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLL-VIGGGSGGLACAKEAAQ-LGKKVAVADYV   38 (488)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEEec
Confidence            469999 99999999999999998 48999999973

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.61  E-value=5.5e-05  Score=59.54  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +||++ |||+|++|+.+|.+|++ .+.+|+|||+++
T Consensus         1 ~~dvv-IIG~G~aGl~aA~~l~~-~g~~V~lie~~~   34 (455)
T 2yqu_A            1 MYDLL-VIGAGPGGYVAAIRAAQ-LGMKVGVVEKEK   34 (455)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CCCEE-EECCChhHHHHHHHHHH-CCCeEEEEeCCC
Confidence            37999 99999999999999998 489999999984

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.61  E-value=4.8e-05  Score=63.59  Aligned_cols=36  Identities=28%  Similarity=0.157  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|..|++ .+.+|+|||+...
T Consensus        17 ~~~DVv-VVG~G~AGl~AAl~aa~-~G~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAV-VVGAGGAGLRAAFGLSE-AGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             ccCCEE-EECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            458999 99999999999999998 4899999999753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.61  E-value=4.8e-05  Score=61.82  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|++|+++|..|++ .+.+|+|||+....
T Consensus        25 ~~~dVl-IVGaGpaGl~~A~~La~-~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVL-ILGGGPVGMALALDLAH-RQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCSC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            358999 99999999999999998 58999999997643

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.60  E-value=5.7e-05  Score=59.49  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|.+|++. +.+|+|||+.+
T Consensus         5 ~~~dvv-IIGaG~aGl~aA~~l~~~-g~~V~liE~~~   39 (470)
T 1dxl_A            5 DENDVV-IIGGGPGGYVAAIKAAQL-GFKTTCIEKRG   39 (470)
T ss_dssp             CCCCEE-EECCSHHHHHHHHHHHHH-TCCEEEEECSS
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            458999 999999999999999984 89999999985

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.60  E-value=5e-05  Score=60.01  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dvv-IIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYI-AIGGGSGGIASINRAAM-YGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            358999 99999999999999998 589999999974

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.60  E-value=6.2e-05  Score=62.01  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .||++ |||+|++|.++|.++++ .+.+|+|||...
T Consensus        42 dYDvi-VIG~GpaG~~aA~~aa~-~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYV-VIGGGPGGMASAKEAAA-HGARVLLFDYVK   75 (542)
T ss_dssp             SEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECCCC
T ss_pred             CCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence            38999 99999999999999998 589999999754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.60  E-value=7.2e-05  Score=60.19  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-----------cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-----------AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-----------~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||||++|+++|..|++.           .+.+|+|||+....
T Consensus         6 ~~~dVv-IVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEII-IVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEE-EECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            357999 999999999999999982           58999999986543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.60  E-value=7.6e-05  Score=60.22  Aligned_cols=37  Identities=24%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ....+|++ |||+|.+|+.+|.+|++. +.+|+|||++.
T Consensus        40 ~~~~~dVv-IIGgG~aGl~aA~~l~~~-G~~V~liE~~~   76 (523)
T 1mo9_A           40 DPREYDAI-FIGGGAAGRFGSAYLRAM-GGRQLIVDRWP   76 (523)
T ss_dssp             CCSCBSEE-EECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CCCcCCEE-EECCCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            34568999 999999999999999984 89999999986

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.59  E-value=7.5e-05  Score=60.15  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=33.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||||.+|+.+|..|++ .+.+|+|||+.+.
T Consensus        90 ~~~~dVv-IVGgG~aGl~aA~~La~-~G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCL-VVGAGPCGLRAAVELAL-LGARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCSS
T ss_pred             cCCCCEE-EECccHHHHHHHHHHHH-CCCeEEEEEeccc
Confidence            4468999 99999999999999998 4899999999754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.59  E-value=6.4e-05  Score=60.26  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         2 ~~dVv-IIGgG~aGl~aA~~l~~-~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLI-VIGGGSGGMAAARRAAR-HNAKVALVEKSR   35 (500)
T ss_dssp             CBSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ccCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            48999 99999999999999998 589999999985

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.59  E-value=5.8e-05  Score=59.70  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|.+|++. +.+|+|||+.+
T Consensus         5 ~~~dvv-IIGgG~aGl~aA~~l~~~-g~~V~liE~~~   39 (474)
T 1zmd_A            5 IDADVT-VIGSGPGGYVAAIKAAQL-GFKTVCIEKNE   39 (474)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHHT-TCCEEEEECSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence            358999 999999999999999984 89999999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.58  E-value=6e-05  Score=63.99  Aligned_cols=36  Identities=25%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      .++|++ |||+|.+|+++|.+|++. +. +|+|||++..
T Consensus         3 ~~~dVv-IIGgGi~Gls~A~~La~~-G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIV-IIGAGIVGTNLADELVTR-GWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEE-EECCSHHHHHHHHHHHHT-TCCCEEEECSSCT
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHhC-CCCcEEEEeCCCC
Confidence            358999 999999999999999984 76 8999999864

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.58  E-value=7.1e-05  Score=58.36  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|.+|++. +.+|+|+|+++.
T Consensus         3 ~~~v~-iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~   37 (384)
T 2bi7_A            3 SKKIL-IVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH   37 (384)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHTT-TCEEEEEESSSS
T ss_pred             cCCEE-EECcCHHHHHHHHHHHHC-CCcEEEEEecCC
Confidence            47899 999999999999999984 799999999754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.58  E-value=5.4e-05  Score=63.70  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+...
T Consensus         4 ~~~DVv-VIGgG~AGL~AAl~aae-~G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSL-VIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             ccccEE-EECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            358999 99999999999999998 4899999999753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.57  E-value=6.4e-05  Score=55.18  Aligned_cols=33  Identities=24%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .||++ |||+|++|+.+|.+|.+ .+.+|+|||..
T Consensus         1 ~~dvv-IIG~G~aGl~aA~~l~~-~g~~v~li~~~   33 (310)
T 1fl2_A            1 AYDVL-IVGSGPAGAAAAIYSAR-KGIRTGLMGER   33 (310)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECSS
T ss_pred             CCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            37999 99999999999999998 58899999863

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.57  E-value=6.2e-05  Score=59.88  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||+|.+|+.+|.+|++ .+.+|+|||+.+
T Consensus         6 ~~dVv-IIGaG~aGl~aA~~l~~-~G~~V~liE~~~   39 (482)
T 1ojt_A            6 EYDVV-VLGGGPGGYSAAFAAAD-EGLKVAIVERYK   39 (482)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             cCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            58999 99999999999999998 589999999954

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.57  E-value=6.8e-05  Score=63.60  Aligned_cols=35  Identities=29%  Similarity=0.265  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||||.||+.+|..|++ .+.+|+|||.+.
T Consensus        27 ~~yDVI-VIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVI-IIGGGHAGTEAAMAAAR-MGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEE-EECChHHHHHHHHHHHh-CCCCEEEEeecc
Confidence            469999 99999999999999998 589999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.57  E-value=8.3e-05  Score=60.22  Aligned_cols=37  Identities=30%  Similarity=0.318  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+.+|.+|.+. +.+|+|||+++.
T Consensus        14 ~~~~dVv-IIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   50 (542)
T 1w4x_A           14 PEEVDVL-VVGAGFSGLYALYRLREL-GRSVHVIETAGD   50 (542)
T ss_dssp             CSEEEEE-EECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEE-EECccHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3468999 999999999999999984 889999999764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.57  E-value=0.0001  Score=58.33  Aligned_cols=35  Identities=31%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...+|++ |||+|.+|+++|.+|.+ .+.+|+|+|+.
T Consensus        42 ~~~~~V~-IIGAGiaGL~aA~~L~~-~G~~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRIL-IVGAGIAGLVAGDLLTR-AGHDVTILEAN   76 (376)
T ss_dssp             CSCCEEE-EECCBHHHHHHHHHHHH-TSCEEEEECSC
T ss_pred             CCCceEE-EECCCHHHHHHHHHHHH-CCCcEEEEecc
Confidence            3457999 99999999999999998 48999999998

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.57  E-value=4.7e-05  Score=59.50  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-----CeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-----WSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-----~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|..|.+. +     .+|+|||+.+.
T Consensus        29 ~~~dVv-IIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLI-GVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEE-EECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSS
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCC
Confidence            468999 999999999999999984 5     89999999874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.56  E-value=5.9e-05  Score=62.80  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHH---HhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLS---EVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~---~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|..|+   +..+.+|+|||+...
T Consensus        21 ~~~DVv-VIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDIL-IIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEE-EECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            468999 9999999999999998   424789999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.56  E-value=6.9e-05  Score=59.24  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||+|++|+.+|.+|++. +.+|+|||+.+
T Consensus         5 ~~dVv-IIGgG~aGl~aA~~l~~~-G~~V~liE~~~   38 (478)
T 1v59_A            5 SHDVV-IIGGGPAGYVAAIKAAQL-GFNTACVEKRG   38 (478)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             cCCEE-EECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            58999 999999999999999984 89999999954

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.55  E-value=6.5e-05  Score=56.21  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...+|++ |||+|.+|+.+|..|.+ .+.+|+|||+.
T Consensus        12 ~~~~~vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVI-VIGSGPAGYTAALYAAR-AQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEE-EECCHHHHHHHHHHHHH-TTCCCEEECCS
T ss_pred             CCcCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            4568999 99999999999999998 48999999964

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.55  E-value=6.1e-05  Score=60.14  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-c-CCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-A-HWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~-~~~VlvIEag~   74 (107)
                      .||++ |||+|.+|+.+|.+|++. + +.+|+|||++.
T Consensus         2 ~~dVv-IIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIV-ILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEE-EECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999 999999999999999984 2 88999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.54  E-value=7.1e-05  Score=59.36  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+|++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         6 ~~dvv-IIG~G~aG~~aA~~l~~-~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLI-VIGTGPGGYHAAIRAAQ-LGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             cCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            58999 99999999999999998 489999999986

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.54  E-value=7.3e-05  Score=59.86  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      |++ |||+|.+|+.+|.+|++ .+.+|+|||++
T Consensus         1 DVv-VIG~G~AGl~aA~~la~-~G~~V~viek~   31 (472)
T 2e5v_A            1 MIY-IIGSGIAGLSAGVALRR-AGKKVTLISKR   31 (472)
T ss_dssp             CEE-EECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             CEE-EECCCHHHHHHHHHHHH-CCCCEEEEeCC
Confidence            788 99999999999999998 48999999998

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.54  E-value=9.8e-05  Score=57.98  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~   74 (107)
                      ..+|++ |||||++|+++|..|.+ .+.  +|+|+|+..
T Consensus         5 ~~~dV~-IIGaG~aGl~aA~~L~~-~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            5 TIRKIA-IIGAGPSGLVTAKALLA-EKAFDQVTLFERRG   41 (447)
T ss_dssp             SCCEEE-EECCSHHHHHHHHHHHT-TTCCSEEEEECSSS
T ss_pred             CCCEEE-EECccHHHHHHHHHHHh-cCCCCCeEEEecCC
Confidence            357999 99999999999999998 477  999999975

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.54  E-value=6e-05  Score=55.87  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+
T Consensus         7 ~~~~vv-IIG~G~aGl~~A~~l~~-~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLC-IVGSGPAAHTAAIYAAR-AELKPLLFEG   39 (333)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCCEEECC
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEec
Confidence            358999 99999999999999998 4899999998

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=7.9e-05  Score=58.64  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +||++ |||+|++|+.+|.+|++. +.+|+|||+..
T Consensus         3 ~~dvv-IIGgG~aGl~aA~~l~~~-g~~V~lie~~~   36 (455)
T 1ebd_A            3 ETETL-VVGAGPGGYVAAIRAAQL-GQKVTIVEKGN   36 (455)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEE-EECCCHHHHHHHHHHHhC-CCeEEEEECCC
Confidence            58999 999999999999999984 89999999973

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.52  E-value=9.5e-05  Score=59.27  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+++|.+|++....+|+|+|+.+..
T Consensus         8 ~~~~v~-iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIV-IIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEE-EECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEE-EECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            458999 99999999999999998533799999998643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.52  E-value=7e-05  Score=62.08  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcC--CeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAH--WSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~--~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|..|++. +  .+|+|||+...
T Consensus         5 ~~DVv-IVG~G~AGl~aAl~la~~-G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLA-IVGAGGAGLRAAIAAAQA-NPNAKIALISKVYP   41 (602)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHHH-CTTCCEEEEESSCG
T ss_pred             cCCEE-EECCCHHHHHHHHHHHhc-CCCCcEEEEeCCCC
Confidence            58999 999999999999999984 6  89999999753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.51  E-value=0.00012  Score=57.75  Aligned_cols=36  Identities=31%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|..|.+. +.+|+|+|+.+.
T Consensus        32 ~~~~v~-IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~   67 (498)
T 2iid_A           32 NPKHVV-IVGAGMAGLSAAYVLAGA-GHQVTVLEASER   67 (498)
T ss_dssp             SCCEEE-EECCBHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHhC-CCeEEEEECCCC
Confidence            357999 999999999999999984 899999999754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.50  E-value=8.9e-05  Score=62.76  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..||++ |||||.||+.+|..+++ .+.+|+|||.+.
T Consensus        26 ~~yDVI-VIGgG~AGl~AAlalAr-~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVV-VIGGGHAGIEAALAAAR-MGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCCEEEEEecc
Confidence            469999 99999999999999998 589999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.49  E-value=8.7e-05  Score=58.73  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+|++ |||+|++|+.+|.+|++. +.+|+|||++.
T Consensus         4 ~~~dvv-IIG~G~aGl~aA~~l~~~-g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLL-IIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (458)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHHC-CCEEEEEccCC
Confidence            358999 999999999999999984 89999999953

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.49  E-value=0.0001  Score=60.42  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=32.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+.+|.+|.+ .+.+|+|||+++.
T Consensus        19 ~~~~dVv-IIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVV-VVGAGIAGLYAIHRFRS-QGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEE-EECchHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            4568999 99999999999999998 6889999999653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.48  E-value=9.8e-05  Score=62.50  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...||++ |||||.||+.+|..|++ .+.+|+|||...
T Consensus        19 ~~~yDVI-VIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVI-VVGAGHAGCEAALAVAR-GGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             cCcCCEE-EECccHHHHHHHHHHHH-CCCcEEEEEecc
Confidence            4469999 99999999999999998 489999999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.48  E-value=0.00011  Score=58.71  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEc
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLE   71 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIE   71 (107)
                      ..||++ |||+|++|+.+|.+|++..+.+|+|||
T Consensus         2 ~~~dvv-VIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLV-VIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEE-EECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            358999 999999999999999872388999999

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.46  E-value=0.00011  Score=57.42  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+.+|..|++. ++.+|+|+|++...
T Consensus        64 ~~~dv~-IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVI-IVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEE-EECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CcCCEE-EECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            357999 999999999999999984 38999999997543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.43  E-value=0.00014  Score=59.45  Aligned_cols=37  Identities=32%  Similarity=0.312  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+.+|.+|.+ .+.+|+|||+++.
T Consensus         7 ~~~~dVv-IIGaG~aGl~aA~~L~~-~g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAV-VIGAGVTGIYQAFLINQ-AGMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEE-EECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            3468999 99999999999999998 6889999999754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.42  E-value=0.00013  Score=59.67  Aligned_cols=37  Identities=14%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||.+|+.+|.+|.+..+.+|+|||+.+.
T Consensus         7 ~~~dVv-IIGaG~aGl~aA~~L~~~~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAV-VIGAGFGGIYAVHKLHHELGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEE-EECcCHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence            458999 9999999999999999336889999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.00018  Score=56.47  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=32.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .+|++ |||+|.+|+.+|.+|.+. ++.+|+|||+++..
T Consensus         3 ~~~Vv-IIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVV-IIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEE-EECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47899 999999999999999984 47899999998743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.40  E-value=0.00015  Score=58.26  Aligned_cols=32  Identities=19%  Similarity=0.192  Sum_probs=29.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEc
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLE   71 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIE   71 (107)
                      .||++ |||+|++|+.+|.+|++..+.+|+|||
T Consensus         7 ~~dvv-VIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            7 AFDLV-VIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccCEE-EECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            58999 999999999999999872389999999

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.36  E-value=0.00017  Score=60.35  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh----cCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV----AHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~----~~~~VlvIEag~~~   76 (107)
                      .+|++ |||||++|+++|..|++.    .+.+|+|||+.+..
T Consensus         8 ~~dVl-IVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVL-IVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEE-EECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEE-EECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            58999 999999999999999982    48999999987543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.36  E-value=0.00017  Score=56.65  Aligned_cols=35  Identities=14%  Similarity=0.073  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.+|+.+|.+|++. ++.+|+|||+.+.
T Consensus         1 ~dvv-IIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVI-VVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEE-EECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5888 999999999999999984 4899999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.36  E-value=0.00019  Score=56.45  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+++|.+|.+. +. +|+|+|++..
T Consensus         4 ~~~~~-iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~   39 (472)
T 1b37_A            4 GPRVI-VVGAGMSGISAAKRLSEA-GITDLLILEATDH   39 (472)
T ss_dssp             -CCEE-EECCBHHHHHHHHHHHHT-TCCCEEEECSSSS
T ss_pred             CCeEE-EECCCHHHHHHHHHHHhc-CCCceEEEeCCCC
Confidence            57999 999999999999999984 77 8999999754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.35  E-value=0.00024  Score=59.27  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+.+|..|++. +.+|+|||+++.
T Consensus       389 ~~~~~Vv-IIGgG~AGl~aA~~La~~-G~~V~liE~~~~  425 (690)
T 3k30_A          389 ESDARVL-VVGAGPSGLEAARALGVR-GYDVVLAEAGRD  425 (690)
T ss_dssp             SSCCEEE-EECCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             cccceEE-EECCCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            3468999 999999999999999985 899999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.34  E-value=0.00022  Score=56.72  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|.+|.+. ++.+|+|||+...
T Consensus        36 ~~dvv-IIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYV-IIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEE-EECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEE-EECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            46999 999999999999999984 4899999999764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.32  E-value=0.00021  Score=58.23  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...||++ |||+|+||+.+|.+|++ .+.+|+|||+.
T Consensus       105 ~~~~dvv-VIG~GpAGl~aA~~l~~-~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLI-VIGGGSGGLAAGKEAAK-YGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             cccccEE-EECCCccHHHHHHHHHh-CCCeEEEEecc
Confidence            3468999 99999999999999998 48999999974

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.32  E-value=0.00017  Score=56.95  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      ..|++ |||+|.+|+.+|.+|.+. ++.+|+|||+.+.
T Consensus         3 ~~~Vv-IIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVV-VIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             -CEEE-EECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CCcEE-EECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            36899 999999999999999984 4899999999875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.31  E-value=0.00026  Score=55.56  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      +|++ |||+|.+|+.+|.+|++. ++.+|+|||+.+.
T Consensus         1 ~dvv-IIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVI-VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEE-EECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEE-EECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            3788 999999999999999984 4899999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.30  E-value=0.00033  Score=56.13  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...++++ |||+|+||+.+|..|.+. +.+|.|+|+.+.
T Consensus       120 ~~~~~V~-IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~  156 (456)
T 2vdc_G          120 ELGLSVG-VIGAGPAGLAAAEELRAK-GYEVHVYDRYDR  156 (456)
T ss_dssp             SCCCCEE-EECCSHHHHHHHHHHHHH-TCCEEEECSSSS
T ss_pred             CCCCEEE-EECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            3467999 999999999999999984 889999999764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.26  E-value=0.00027  Score=55.63  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=31.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .|++ |||+|.+|+.+|.+|.+. ++.+|+|||+++.
T Consensus         3 ~~Vv-IIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   38 (452)
T 3oc4_A            3 LKIV-IIGASFAGISAAIASRKKYPQAEISLIDKQAT   38 (452)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CCEE-EECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5899 999999999999999983 4899999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.24  E-value=0.00033  Score=56.12  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      +..+|++ |||+|.||+.+|..|.+. .+.+|+|||+.+.
T Consensus         9 ~~~~~vv-IIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~   47 (493)
T 1m6i_A            9 PSHVPFL-LIGGGTAAFAAARSIRARDPGARVLIVSEDPE   47 (493)
T ss_dssp             CSEEEEE-EESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCcCCEE-EECChHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4468999 999999999999998763 4789999999864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.24  E-value=0.00032  Score=54.40  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|.+|.+. +.  +|+|||+.+.
T Consensus         8 ~~~~vv-IIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~   45 (415)
T 3lxd_A            8 ERADVV-IVGAGHGGAQAAIALRQN-GFEGRVLVIGREPE   45 (415)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHHT-TCCSCEEEEESSSS
T ss_pred             CCCcEE-EECChHHHHHHHHHHHcc-CcCCCEEEEecCCC
Confidence            468999 999999999999999984 44  4999999764

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.24  E-value=0.00031  Score=57.43  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +|++ |||+|.||+.+|..|++ .+.+|+|||..+
T Consensus         2 ~dVi-VIGgG~AG~~AA~~la~-~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVN-VVGAGLAGSEAAWTLLR-LGVPVRLFEMRP   34 (443)
T ss_dssp             CCEE-EECCSHHHHHHHHHHHH-TTCCEEEECCTT
T ss_pred             CCEE-EECchHHHHHHHHHHHH-CCCcEEEEeccC
Confidence            6899 99999999999999998 589999999876

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.22  E-value=0.0003  Score=56.06  Aligned_cols=36  Identities=8%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|.+|.+.  ++.+|+|||+...
T Consensus        35 ~~dvv-IIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIV-VVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEE-EECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            48999 999999999999999984  3499999999764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.21  E-value=0.00042  Score=54.45  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=30.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~~   75 (107)
                      .+|++ |||+|.+|+.+|..|.+. +.  +|+|||+.+.
T Consensus         4 ~~~vv-IIGgG~aGl~aA~~l~~~-g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVV-IVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEE-EECCSHHHHHHHHHHHHT-TCCSEEEEECSCCS
T ss_pred             CCcEE-EEcCHHHHHHHHHHHHcc-CcCCCEEEEECCCC
Confidence            47999 999999999999999984 44  8999998753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.21  E-value=0.00038  Score=59.03  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=34.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      .+||++ |||.|..|+++|..|++ .+.+||+||++....
T Consensus         7 ~~~D~~-i~GtGl~~~~~a~~~~~-~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            7 SDFDVI-VIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   44 (650)
T ss_dssp             SBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CcCCEE-EECCcHHHHHHHHHHHh-CCCEEEEEcCCCccc
Confidence            469999 99999999999999998 599999999988654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.20  E-value=0.00035  Score=56.49  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=31.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ...+|++ |||||+||+.+|.+|++ .+.+|+|||..
T Consensus       210 ~~~~dVv-IIGgG~AGl~aA~~la~-~G~~v~lie~~  244 (521)
T 1hyu_A          210 RDAYDVL-IVGSGPAGAAAAVYSAR-KGIRTGLMGER  244 (521)
T ss_dssp             SCCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             cCcccEE-EECCcHHHHHHHHHHHh-CCCeEEEEECC
Confidence            3468999 99999999999999998 48999999863

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.20  E-value=0.00034  Score=53.94  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=30.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~   75 (107)
                      .+++ |||||.+|+.+|.+|.+.  .+.+|+|||+.+.
T Consensus         2 ~~Vv-IIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVL-VLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEE-EECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEE-EECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            3688 999999999999999971  4799999999863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.20  E-value=0.00044  Score=56.14  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      +...+++ |||+|.+|+.+|.+|.+. ++.+|+|||+++..
T Consensus        34 ~~~~~Vv-IIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIV-VVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEE-EECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEE-EECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3457899 999999999999999984 47999999998753

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.19  E-value=0.00021  Score=57.35  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+|++ |||+|.+|+.+|.+|.+.  .+|+|||+++..
T Consensus       108 ~~dVv-IIGgG~aGl~aA~~L~~~--~~V~vie~~~~~  142 (493)
T 1y56_A          108 VVDVA-IIGGGPAGIGAALELQQY--LTVALIEERGWL  142 (493)
T ss_dssp             EESCC-EECCSHHHHHHHHHHTTT--CCEEEECTTSSS
T ss_pred             cCCEE-EECccHHHHHHHHHHHhc--CCEEEEeCCCCC
Confidence            57999 999999999999999985  999999998643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.19  E-value=0.00037  Score=53.51  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~   74 (107)
                      .+|++ |||+|.+|+.+|.+|.+.. +.+|+++|+..
T Consensus         4 ~~dvv-IIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLV-IIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEE-EECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEE-EECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            58999 9999999999999999842 36799999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.18  E-value=0.00032  Score=54.13  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .|++ |||+|+||+.+|.+|.+. + +|+|||++..
T Consensus         9 ~~vv-IIGgG~AGl~aA~~l~~~-g-~V~lie~~~~   41 (367)
T 1xhc_A            9 SKVV-IVGNGPGGFELAKQLSQT-Y-EVTVIDKEPV   41 (367)
T ss_dssp             CEEE-EECCSHHHHHHHHHHTTT-S-EEEEECSSSS
T ss_pred             CcEE-EECCcHHHHHHHHHHhhc-C-CEEEEECCCC
Confidence            5899 999999999999999874 5 9999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.16  E-value=0.00041  Score=55.22  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh--cCCe---EEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV--AHWS---VLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~--~~~~---VlvIEag~~   75 (107)
                      +|++ |||||++|+++|..|.+.  .+.+   |+|||+.+.
T Consensus         3 ~~V~-IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIA-ILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEE-EECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            5899 999999999999999871  3778   999999754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.15  E-value=0.00033  Score=57.34  Aligned_cols=37  Identities=32%  Similarity=0.382  Sum_probs=32.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|.+|+.+|..|++ .+.+|+|||+.+..
T Consensus       125 ~~~~v~-viG~G~aG~~aa~~~~~-~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          125 ETTDVV-IIGSGGAGLAAAVSARD-AGAKVILLEKEPIP  161 (572)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHS-SSCCEEEECSSSSS
T ss_pred             CCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            367999 99999999999999998 48999999997643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.15  E-value=0.00042  Score=59.38  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...+|++ |||+|.+|+++|..|++. +.+|+|+|++..
T Consensus       334 ~~~~~v~-viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~  370 (776)
T 4gut_A          334 YHNKSVI-IIGAGPAGLAAARQLHNF-GIKVTVLEAKDR  370 (776)
T ss_dssp             GTSCEEE-EECCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCCCeEE-EECCCHHHHHHHHHHHHC-CCcEEEEecccc
Confidence            3458999 999999999999999984 889999999653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.10  E-value=0.00044  Score=54.15  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH--hcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE--VAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~--~~~~~VlvIEag~~   75 (107)
                      +.+++ |||||.+|+.+|.+|.+  ..+.+|.|||+.+.
T Consensus         4 m~~vv-IIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVV-ILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEE-EECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEE-EECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            36899 99999999999999997  25899999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.09  E-value=0.00059  Score=52.25  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||+|.||+.+|.+|.+. ++.+|.|||+.+.
T Consensus         4 kVv-IIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVV-VVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEE-EECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            467 999999999999999874 4679999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.08  E-value=0.00059  Score=56.65  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|..|.+ .+.+|+|||+.+.
T Consensus       372 ~~~~vv-IIGgG~AGl~aA~~l~~-~g~~V~lie~~~~  407 (671)
T 1ps9_A          372 QKKNLA-VVGAGPAGLAFAINAAA-RGHQVTLFDAHSE  407 (671)
T ss_dssp             SCCEEE-EECCSHHHHHHHHHHHT-TTCEEEEEESSSS
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            458999 99999999999999998 5899999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.06  E-value=0.00068  Score=52.82  Aligned_cols=37  Identities=14%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.+|+.+|.+|.+.. ..+|+|||+.+.
T Consensus         6 ~~~~vv-IIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            6 LKAPVV-VLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             CCSSEE-EECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCcEE-EECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            358999 9999999999999999842 236999999764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.05  E-value=0.0007  Score=54.30  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .+++ |||+|.||+.+|.+|.+. ++.+|+|||+.+..
T Consensus         2 ~~Vv-IIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKIL-IIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEE-EECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEE-EECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4788 999999999999999984 37899999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.03  E-value=0.00075  Score=56.83  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|.||+.+|..|.+ .+.+|+|||+.+.
T Consensus       388 ~~~~Vv-IIGgGpAGl~aA~~L~~-~G~~Vtlie~~~~  423 (729)
T 1o94_A          388 NKDSVL-IVGAGPSGSEAARVLME-SGYTVHLTDTAEK  423 (729)
T ss_dssp             SCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCceEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            457999 99999999999999998 4899999999764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.98  E-value=0.001  Score=55.43  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...++++ |||+|.+|+.+|..|.+ .+.+|+|+|+.+.
T Consensus       105 ~~~~~v~-viG~G~~gl~~a~~l~~-~g~~v~~~e~~~~  141 (662)
T 2z3y_A          105 KKTGKVI-IIGSGVSGLAAARQLQS-FGMDVTLLEARDR  141 (662)
T ss_dssp             SCCCEEE-EECCBHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cCCCeEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            4457999 99999999999999998 5899999999754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.97  E-value=0.00078  Score=52.13  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~~   75 (107)
                      .+++ |||+|.+|+.+|..|.+. +.  +|.|||+.+.
T Consensus         2 k~vv-IIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~   37 (404)
T 3fg2_P            2 DTVL-IAGAGHAGFQVAVSLRQA-KYPGRIALINDEKH   37 (404)
T ss_dssp             CCEE-EECCSHHHHHHHHHHHHT-TCCSCEEEECCSSS
T ss_pred             CCEE-EEcChHHHHHHHHHHHhh-CcCCCEEEEeCCCC
Confidence            3788 999999999999999984 44  8999999863

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.94  E-value=0.00073  Score=58.81  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|+||+.+|.+|.+ .+.+|+|||+.+.
T Consensus       127 ~~~dVv-VIGaGpAGl~AA~~la~-~G~~V~lie~~~~  162 (965)
T 2gag_A          127 VHTDVL-VVGAGPAGLAAAREASR-SGARVMLLDERAE  162 (965)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cCCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            358999 99999999999999998 4899999999754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.92  E-value=0.00082  Score=53.66  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH-h-c----CCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE-V-A----HWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~-~-~----~~~VlvIEag~~   75 (107)
                      .++++ |||+|++|+.+|..|.+ . +    +.+|.|||+.+.
T Consensus         3 ~~~Vv-IIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIA-IVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEE-EECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            57899 99999999999999987 4 2    799999999854

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.78  E-value=0.0013  Score=52.48  Aligned_cols=36  Identities=22%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++++ |||+|.+|+.+|..|.+. ++.+|.|||+.+.
T Consensus         6 ~~~vv-IIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            6 TPQIC-VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CceEE-EECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            47999 999999999999999985 2399999999764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.76  E-value=0.0015  Score=50.84  Aligned_cols=37  Identities=16%  Similarity=0.077  Sum_probs=31.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ++..++ |||+|.||+.+|..| ...+.+|.|||+.+..
T Consensus         8 ~~~~~v-IvGgG~AGl~aA~~L-~~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKIL-ILGAGPAGFSAAKAA-LGKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEE-EECCSHHHHHHHHHH-TTTCSCEEEECSSSSC
T ss_pred             CCCCEE-EEcCcHHHHHHHHHH-hCCCCEEEEEECCCCC
Confidence            346788 999999999999999 4478999999998653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.72  E-value=0.0017  Score=50.95  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||+|.||+.+|.+|.+. ++.+|.|||+.+.
T Consensus         4 ~Vv-IIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVV-VIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEE-EECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            477 999999999999999873 4689999998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.71  E-value=0.0013  Score=51.94  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||+|+||+.+|.+|++. ++.+|+|||+++.
T Consensus         2 KVv-IIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            2 KIV-VVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             CEE-EECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             eEE-EECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            467 999999999999999874 3478999999764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.71  E-value=0.0017  Score=50.43  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~   75 (107)
                      .+++ |||+|.||+.+|..|.+.. ..+|.|||+.+.
T Consensus         3 ~~vv-IIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            3 THVA-IIGNGVGGFTTAQALRAEGFEGRISLIGDEPH   38 (410)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHTTCCSEEEEEECSSS
T ss_pred             CCEE-EEcccHHHHHHHHHHHccCcCCeEEEEECCCC
Confidence            3788 9999999999999999842 235999999864

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.65  E-value=0.002  Score=55.83  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ....+++ |||+|.+|+.+|..|.+ .+.+|+|+|+...
T Consensus       276 ~~~~~v~-viG~G~aGl~~A~~l~~-~g~~v~v~E~~~~  312 (852)
T 2xag_A          276 KKTGKVI-IIGSGVSGLAAARQLQS-FGMDVTLLEARDR  312 (852)
T ss_dssp             SCCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCCeEE-EECCCHHHHHHHHHHHH-CCCcEEEEEecCc
Confidence            3457999 99999999999999998 5899999999754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.56  E-value=0.0021  Score=56.24  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      ..+|++ |||+|+||+.+|.+|++. +. +|+|+|+.+.
T Consensus       186 ~~~~Vv-VIGgGpAGl~aA~~L~~~-G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          186 YSAKIA-LLGAGPASISCASFLARL-GYSDITIFEKQEY  222 (1025)
T ss_dssp             GGCCEE-EECCSHHHHHHHHHHHHT-TCCCEEEEESSSS
T ss_pred             CCCEEE-EECccHHHHHHHHHHHhc-CCCcEEEEeCCCC
Confidence            357999 999999999999999984 77 7999999753

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.39  E-value=0.0029  Score=54.24  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-------CeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-------WSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-------~~VlvIEag~   74 (107)
                      ...+++ |||+|.+|+++|.+|.+..+       .+|.|+|+.+
T Consensus        55 ~~~~v~-IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIA-IVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEE-EECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            357899 99999999999999998421       8999999986

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.36  E-value=0.0031  Score=50.95  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+..++ |||+|.||+.+|.+|.+ .+.+|.|||+.+.
T Consensus        41 ~KprVV-IIGgG~AGl~~A~~L~~-~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVL-ILGSGWGAISFLKHIDT-KKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEE-EECSSHHHHHHHHHSCT-TTCEEEEEESSSE
T ss_pred             CCCCEE-EECCcHHHHHHHHHhhh-CCCcEEEECCCCC
Confidence            356788 99999999999999986 5889999998753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.25  E-value=0.0074  Score=48.49  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~   75 (107)
                      ....||+| |||+|++|+++|.+|.+.             ....++.+|+.+.
T Consensus        36 ~~~i~Dvi-~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~   87 (501)
T 4b63_A           36 QDELHDLL-CVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ   87 (501)
T ss_dssp             TTSCEEEE-EECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS
T ss_pred             CCCcCcEE-EEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC
Confidence            34569999 999999999999999763             2356788888654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.29  E-value=0.066  Score=35.50  Aligned_cols=32  Identities=16%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|.|..|..+|.+|.+ .+..|.++|..+
T Consensus         9 ~vi-IiG~G~~G~~la~~L~~-~g~~v~vid~~~   40 (140)
T 3fwz_A            9 HAL-LVGYGRVGSLLGEKLLA-SDIPLVVIETSR   40 (140)
T ss_dssp             CEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             CEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCH
Confidence            577 99999999999999998 488999999865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.08  E-value=0.072  Score=34.89  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+ .+.+|.++|..+
T Consensus         8 ~v~-I~G~G~iG~~la~~L~~-~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYI-VIGSEAAGVGLVRELTA-AGKKVLAVDKSK   39 (141)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            577 99999999999999998 488999999754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.82  E-value=0.098  Score=33.52  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+ .+.+|.++|..+
T Consensus         6 ~i~-IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YII-IAGIGRVGYTLAKSLSE-KGHDIVLIDIDK   37 (140)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            577 99999999999999998 478999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.80  E-value=0.089  Score=35.30  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=28.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      -.++ |+|+|..|..+|..|.+ .+.+|.+++..+
T Consensus        20 ~~v~-IiG~G~iG~~la~~L~~-~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIV-IFGCGRLGSLIANLASS-SGHSVVVVDKNE   52 (155)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCG
T ss_pred             CcEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            3577 99999999999999988 478999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=93.75  E-value=0.08  Score=41.25  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       149 ~~~vv-IiG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          149 VNNVV-VIGSGYIGIEAAEAFAK-AGKKVTVIDILDR  183 (447)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CCeEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCcc
Confidence            35788 99999999999999988 4889999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.62  E-value=0.11  Score=34.64  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=27.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |+|+|..|..++..|.+ .+..|.++|..
T Consensus         5 ~vl-I~G~G~vG~~la~~L~~-~g~~V~vid~~   35 (153)
T 1id1_A            5 HFI-VCGHSILAINTILQLNQ-RGQNVTVISNL   35 (153)
T ss_dssp             CEE-EECCSHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             cEE-EECCCHHHHHHHHHHHH-CCCCEEEEECC
Confidence            577 99999999999999988 47899999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=92.83  E-value=0.13  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.|||.++.-
T Consensus       147 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLF-VIGGGDSAVEEGTFLTK-FADKVTIVHRRDEL  180 (312)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCEEEEEeccccc
Confidence            467 99999999999999987 58899999998643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.78  E-value=0.15  Score=39.84  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       169 ~vv-IiGgG~~g~e~A~~l~~-~g~~V~lv~~~~~  201 (455)
T 2yqu_A          169 RLI-VVGGGVIGLELGVVWHR-LGAEVIVLEYMDR  201 (455)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEecCCc
Confidence            567 99999999999999998 4889999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.53  E-value=0.14  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++. +.+|.++|.++..
T Consensus       173 ~vv-ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          173 HLV-VVGGGYIGLELGIAYRKL-GAQVSVVEARERI  206 (458)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEE-EECcCHHHHHHHHHHHHC-CCeEEEEEcCCcc
Confidence            577 999999999999999984 8899999998653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=92.44  E-value=0.16  Score=39.89  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus       171 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  203 (464)
T 2eq6_A          171 RLL-VIGGGAVGLELGQVYRR-LGAEVTLIEYMPE  203 (464)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEEEcCCc
Confidence            577 99999999999999998 4889999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.21  E-value=0.18  Score=39.29  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -.++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       171 ~~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          171 KSLV-VIGGGYIGIELGTAYAN-FGTKVTILEGAGE  204 (455)
T ss_dssp             SEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CeEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence            3577 99999999999999998 4889999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=92.14  E-value=0.16  Score=39.31  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+. +.+|.++|..+..
T Consensus       148 ~vv-VIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  181 (385)
T 3klj_A          148 KAF-IIGGGILGIELAQAIIDS-GTPASIGIILEYP  181 (385)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHhC-CCeEEEEEcCCcc
Confidence            467 999999999999999984 8899999998654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.99  E-value=0.23  Score=30.74  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..++..|.+.+..+|.+++...
T Consensus         7 ~v~-I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NIC-VVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEE-EECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            577 999999999999999985338899988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.99  E-value=0.2  Score=34.20  Aligned_cols=33  Identities=21%  Similarity=0.082  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|.|..|..+|.+|.+..+.+|.++|..+
T Consensus        41 ~v~-IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVL-ILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEE-EECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEE-EECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            577 999999999999999873178999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=91.90  E-value=0.22  Score=37.91  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       147 ~v~-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          147 RVL-LLGAGLIGCEFANDLSS-GGYQLDVVAPCEQV  180 (384)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCcch
Confidence            567 99999999999999998 48899999997643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.80  E-value=0.21  Score=31.98  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..++.+|.+. +.+|.+++...
T Consensus         8 ~v~-I~G~G~iG~~~a~~l~~~-g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFA-VIGLGRFGGSIVKELHRM-GHEVLAVDINE   39 (144)
T ss_dssp             SEE-EECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             cEE-EECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            477 999999999999999984 68899988743

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.74  E-value=0.2  Score=35.35  Aligned_cols=32  Identities=13%  Similarity=0.318  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+ .+..|.++|..+
T Consensus         2 ~ii-IiG~G~~G~~la~~L~~-~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVI-IIGGETTAYYLARSMLS-RKYGVVIINKDR   33 (218)
T ss_dssp             CEE-EECCHHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            367 99999999999999998 488999999754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.69  E-value=0.21  Score=38.13  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       145 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          145 EAI-IIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF  178 (367)
T ss_dssp             EEE-EEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             cEE-EECCCHHHHHHHHHHHh-CCCEEEEEeCCCee
Confidence            467 99999999999999998 48899999998643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.59  E-value=0.24  Score=38.82  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus       185 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          185 RLT-IIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQI  218 (478)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEEeCCcc
Confidence            567 99999999999999998 48899999998643

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=91.25  E-value=0.26  Score=35.58  Aligned_cols=34  Identities=24%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.....
T Consensus       154 ~vv-ViGgG~ig~e~A~~l~~-~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          154 VLM-VVGGGDAAMEEALHLTK-YGSKVIILHRRDAF  187 (314)
T ss_dssp             EEE-EECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             eEE-EECCChHHHHHHHHHHH-hCCeeeeecccccc
Confidence            577 99999999999999997 48899999987543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=91.13  E-value=0.28  Score=38.37  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       169 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  201 (450)
T 1ges_A          169 RVA-VVGAGYIGVELGGVING-LGAKTHLFEMFDA  201 (450)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCEEEEEEeCCc
Confidence            577 99999999999999998 4889999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.94  E-value=0.3  Score=36.11  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       168 ~vv-VvG~G~~g~e~a~~l~~-~g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYV-VIGGNESGFDAAYQLAK-NGSDIALYTSTTG  200 (369)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECC---
T ss_pred             EEE-EECCCcCHHHHHHHHHh-cCCeEEEEecCCC
Confidence            577 99999999999999998 4789999998754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=90.68  E-value=0.33  Score=37.46  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       147 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          147 RLL-IVGGGVIGLELAATART-AGVHVSLVETQPRL  180 (408)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            567 99999999999999998 48899999998643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.59  E-value=0.18  Score=40.47  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..++ |+|+|..|..+|..|.+ .+..|.+||..+
T Consensus         4 M~ii-I~G~G~vG~~la~~L~~-~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKII-ILGAGQVGGTLAENLVG-ENNDITIVDKDG   36 (461)
T ss_dssp             EEEE-EECCSHHHHHHHHHTCS-TTEEEEEEESCH
T ss_pred             CEEE-EECCCHHHHHHHHHHHH-CCCCEEEEECCH
Confidence            4577 99999999999999987 489999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=90.20  E-value=0.26  Score=38.88  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=29.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -+++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       187 ~~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          187 EDVT-IIGGGAIGLEMAETFVE-LGKKVRMIERNDH  220 (480)
T ss_dssp             CEEE-EECCHHHHHHHHHHHHH-TTCEEEEECCGGG
T ss_pred             CeEE-EECCCHHHHHHHHHHHh-cCCeEEEEEeCCc
Confidence            3577 99999999999999998 4889999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.17  E-value=0.42  Score=35.84  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|+.+|.+|++ .+..|.++....
T Consensus         4 kI~-IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NIL-VIGTGAIGSFYGALLAK-TGHCVSVVSRSD   35 (320)
T ss_dssp             EEE-EESCCHHHHHHHHHHHH-TTCEEEEECSTT
T ss_pred             EEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCh
Confidence            466 99999999999999998 478999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=89.90  E-value=0.41  Score=37.85  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus       196 ~vv-VIGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          196 RVA-VVGAGYIGVELAEAFQR-KGKEVVLIDVVDT  228 (490)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-CCCeEEEEEcccc
Confidence            467 99999999999999998 4889999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=89.81  E-value=0.42  Score=37.54  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       168 ~vv-VvGgG~~g~e~A~~l~~-~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          168 RVA-IIGAGYIGIELAGLLRS-FGSEVTVVALEDR  200 (463)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCEEEEEEcCCc
Confidence            567 99999999999999998 4889999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.74  E-value=0.36  Score=37.60  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       179 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          179 KLV-VIGAGYIGLEMGSVWGR-IGSEVTVVEFASEI  212 (470)
T ss_dssp             EEE-ESCCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCcc
Confidence            567 99999999999999998 48899999998643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=89.70  E-value=0.44  Score=37.28  Aligned_cols=33  Identities=18%  Similarity=0.143  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       180 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  212 (474)
T 1zmd_A          180 KMV-VIGAGVIGVELGSVWQR-LGADVTAVEFLGH  212 (474)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEeccCc
Confidence            577 99999999999999988 4889999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=89.44  E-value=0.42  Score=37.64  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+||.++..
T Consensus       187 ~vv-ViGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          187 KLL-IIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL  220 (482)
T ss_dssp             EEE-EESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            567 99999999999999998 48899999998643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=89.41  E-value=0.48  Score=36.96  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       173 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          173 SII-IAGAGAIGMEFGYVLKN-YGVDVTIVEFLPR  205 (464)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCcHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence            567 99999999999999998 4889999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.39  E-value=0.59  Score=33.61  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=27.3

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +. |||+|..|..+|..|.+ .+.+|.+++....
T Consensus         3 i~-iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~   34 (291)
T 1ks9_A            3 IT-VLGCGALGQLWLTALCK-QGHEVQGWLRVPQ   34 (291)
T ss_dssp             EE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCC
T ss_pred             EE-EECcCHHHHHHHHHHHh-CCCCEEEEEcCcc
Confidence            55 99999999999999998 4789999987653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=89.09  E-value=0.39  Score=35.88  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=27.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|+.+|..|++ .+..|.++....
T Consensus         4 kI~-IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIA-IVGAGALGLYYGALLQR-SGEDVHFLLRRD   35 (312)
T ss_dssp             CEE-EECCSTTHHHHHHHHHH-TSCCEEEECSTT
T ss_pred             EEE-EECcCHHHHHHHHHHHH-CCCeEEEEEcCc
Confidence            466 99999999999999998 478999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=88.93  E-value=0.56  Score=33.83  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+. +.+|.+++.++.
T Consensus       145 ~v~-VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~  177 (311)
T 2q0l_A          145 EVA-VLGGGDTAVEEAIYLANI-CKKVYLIHRRDG  177 (311)
T ss_dssp             EEE-EECCSHHHHHHHHHHHTT-SSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHhc-CCEEEEEeeCCc
Confidence            567 999999999999999974 789999998754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=88.89  E-value=0.55  Score=35.41  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=26.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .+. |||+|..|..+|.+|++ .+..|.+++..
T Consensus         5 kI~-IiGaG~~G~~~a~~L~~-~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RIC-IVGAGAVGGYLGARLAL-AGEAINVLARG   35 (335)
T ss_dssp             CEE-EESCCHHHHHHHHHHHH-TTCCEEEECCH
T ss_pred             EEE-EECcCHHHHHHHHHHHH-CCCEEEEEECh
Confidence            567 99999999999999998 47889998863

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=88.87  E-value=0.52  Score=33.98  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=28.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+++..+.
T Consensus       146 ~v~-VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          146 RVA-VIGGGNSGVEAAIDLAG-IVEHVTLLEFAPE  178 (310)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TBSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHH-hCCEEEEEEeCcc
Confidence            467 99999999999999987 4789999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=88.60  E-value=0.59  Score=36.28  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       150 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVV-IIGGGYIGIEMAEAFAA-QGKNVTMIVRGERV  183 (449)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            577 99999999999999998 48899999998643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=88.57  E-value=0.61  Score=35.91  Aligned_cols=34  Identities=35%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|..+..
T Consensus       145 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          145 RLL-IVGGGLIGCEVATTARK-LGLSVTILEAGDEL  178 (410)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCCcc
Confidence            567 99999999999999998 58899999998643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.55  E-value=0.53  Score=37.28  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|.|..|..+|..|.+ .+..|++||..+
T Consensus         6 ~vi-IiG~Gr~G~~va~~L~~-~g~~vvvId~d~   37 (413)
T 3l9w_A            6 RVI-IAGFGRFGQITGRLLLS-SGVKMVVLDHDP   37 (413)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEECCH
T ss_pred             eEE-EECCCHHHHHHHHHHHH-CCCCEEEEECCH
Confidence            578 99999999999999998 589999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=88.52  E-value=0.64  Score=36.87  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       176 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          176 SVA-VFGPGVIGLELGQALSR-LGVIVKVFGRSGSV  209 (492)
T ss_dssp             EEE-EESSCHHHHHHHHHHHH-TTCEEEEECCTTCC
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            567 99999999999999998 48899999998653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=88.50  E-value=0.6  Score=36.78  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       187 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          187 KVV-VVGAGYIGIELAGVFHG-LGSETHLVIRGET  219 (479)
T ss_dssp             EEE-EECSSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCceEEEEeCCc
Confidence            467 99999999999999998 4889999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=88.49  E-value=0.61  Score=36.28  Aligned_cols=34  Identities=29%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       151 ~vv-ViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          151 RLV-VIGGGYIGLEVAATAIK-ANMHVTLLDTAARV  184 (431)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            466 99999999999999998 48899999987643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=88.38  E-value=0.58  Score=34.10  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       161 ~v~-VvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~  193 (333)
T 1vdc_A          161 PLA-VIGGGDSAMEEANFLTK-YGSKVYIIHRRDA  193 (333)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT-TSSEEEEECSSSS
T ss_pred             eEE-EECCChHHHHHHHHHHh-cCCeEEEEecCCc
Confidence            577 99999999999999987 4789999998764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=88.28  E-value=0.57  Score=36.16  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=30.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      -.++ |||+|..|+-+|..|.+. ++.+|.++++++.
T Consensus       228 ~~vv-VvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          228 MKIA-IIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CeEE-EECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            3577 999999999999999984 4789999998864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=88.28  E-value=0.96  Score=34.58  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|++. +. +|.++|...
T Consensus        10 ~kI~-VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVA-MIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEE-EECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            4677 999999999999999985 54 899998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.00  E-value=0.71  Score=33.52  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=26.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .+. |||+|..|..+|..|.+ .+.+|.+++..
T Consensus         5 ~i~-iiG~G~~G~~~a~~l~~-~g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIA-IAGAGAMGSRLGIMLHQ-GGNDVTLIDQW   35 (316)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred             eEE-EECcCHHHHHHHHHHHh-CCCcEEEEECC
Confidence            466 99999999999999998 47899998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.99  E-value=0.61  Score=36.98  Aligned_cols=33  Identities=9%  Similarity=0.178  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       178 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  210 (500)
T 1onf_A          178 KIG-IVGSGYIAVELINVIKR-LGIDSYIFARGNR  210 (500)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TTCEEEEECSSSS
T ss_pred             eEE-EECChHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            467 99999999999999987 4889999999764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=87.98  E-value=0.57  Score=36.34  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~   74 (107)
                      .++ |||+|..|+-+|..|++. +.+ |.+++.++
T Consensus       214 ~Vv-VvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~  246 (447)
T 2gv8_A          214 SVL-VVGGASSANDLVRHLTPV-AKHPIYQSLLGG  246 (447)
T ss_dssp             CEE-EECSSHHHHHHHHHHTTT-SCSSEEEECTTC
T ss_pred             EEE-EEccCcCHHHHHHHHHHH-hCCcEEEEeCCC
Confidence            577 999999999999999985 556 99998875

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=87.87  E-value=0.71  Score=36.00  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       178 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          178 RLA-VIGSSVVALELAQAFAR-LGSKVTVLARNTLF  211 (467)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             EEE-EECCCHHHHHHHHHHHH-cCCEEEEEEECCcc
Confidence            467 99999999999999998 48899999987643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=87.87  E-value=0.64  Score=36.10  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       151 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TIT-IIGSGYIGAELAEAYSN-QNYNVNLIDGHERV  184 (452)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TTCEEEEEESSSST
T ss_pred             eEE-EECcCHHHHHHHHHHHh-cCCEEEEEEcCCch
Confidence            467 99999999999999987 48899999987643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.82  E-value=0.66  Score=36.28  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=29.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..+.+ .+.+|.++|.++.-
T Consensus       149 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVL-VVGAGYVSLEVLENLYE-RGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-HTCEEEEEESSSCC
T ss_pred             EEE-EECCccchhhhHHHHHh-cCCcceeeeeeccc
Confidence            567 99999999999999998 48899999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=87.76  E-value=0.72  Score=35.99  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       176 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          176 TMV-VIGGGVIGLELGSVWAR-LGAEVTVVEFAPRC  209 (468)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-hCCEEEEEecCCcc
Confidence            567 99999999999999998 48899999998643

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.56  E-value=0.95  Score=31.96  Aligned_cols=33  Identities=15%  Similarity=0.239  Sum_probs=28.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|.+ .+.+|.+++...
T Consensus        20 ~~I~-iiG~G~mG~~la~~l~~-~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEIT-IFGKGNMGQAIGHNFEI-AGHEVTYYGSKD   52 (209)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECTTC
T ss_pred             CEEE-EECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence            4566 99999999999999998 478999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=87.48  E-value=0.79  Score=33.98  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|.+. +.  .|.+++...
T Consensus         8 mkI~-IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLA-VIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEE-EECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            3577 999999999999999984 56  899998754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=87.42  E-value=0.63  Score=34.04  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=26.7

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhc----C-CeEEEEcC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVA----H-WSVLLLEA   72 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~----~-~~VlvIEa   72 (107)
                      ..+. |||+|..|..+|.+|.+.+    + .+|.+++.
T Consensus         9 m~I~-iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIA-VFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEE-EECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3577 9999999999999999841    6 78998876

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.41  E-value=0.75  Score=37.03  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -.++ |+|+|..|..+|..|.+ .+..|.+||..+..
T Consensus       349 ~~vi-IiG~G~~G~~la~~L~~-~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIF-IIGHGRIGCAAAAFLDR-KPVPFILIDRQESP  383 (565)
T ss_dssp             CCEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCCS
T ss_pred             CCEE-EECCCHHHHHHHHHHHH-CCCCEEEEECChHH
Confidence            4578 99999999999999998 58999999987654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.41  E-value=0.53  Score=34.88  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|..|.+. +..|.+++...
T Consensus         4 kI~-iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVA-IIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             EEE-EECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            567 999999999999999984 67888887764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.32  E-value=0.84  Score=33.77  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=27.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|..|++ .+.+|.+++...
T Consensus        17 ~I~-VIG~G~mG~~iA~~la~-~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVT-VIGGGLMGAGIAQVAAA-TGHTVVLVDQTE   48 (302)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            366 99999999999999998 488999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=87.21  E-value=0.76  Score=33.18  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++..+.
T Consensus       147 ~v~-ViG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~  179 (320)
T 1trb_A          147 KVA-VIGGGNTAVEEALYLSN-IASEVHLIHRRDG  179 (320)
T ss_dssp             EEE-EECSSHHHHHHHHHHTT-TSSEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCeEEEEEeCCc
Confidence            567 99999999999999997 4789999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=87.16  E-value=0.77  Score=33.45  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       154 ~v~-VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          154 KVV-VIGGGDAAVEEGMFLTK-FADEVTVIHRRDT  186 (325)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT-TCSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCEEEEEeCCCc
Confidence            467 99999999999999987 4789999998753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=86.98  E-value=0.63  Score=33.93  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       154 ~v~-viG~G~~g~e~a~~l~~-~g~~V~~v~~~~~  186 (335)
T 2zbw_A          154 RVL-IVGGGDSAVDWALNLLD-TARRITLIHRRPQ  186 (335)
T ss_dssp             EEE-EECSSHHHHHHHHHTTT-TSSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-hCCEEEEEEcCCc
Confidence            567 99999999999999987 4789999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=86.97  E-value=0.79  Score=33.70  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       157 ~v~-ViG~G~~g~e~a~~l~~-~g~~V~l~~~~~~  189 (335)
T 2a87_A          157 DIA-VIGGGDSAMEEATFLTR-FARSVTLVHRRDE  189 (335)
T ss_dssp             EEE-EECSSHHHHHHHHHHTT-TCSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHH-hCCeEEEEEcCCc
Confidence            567 99999999999999987 4789999998754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=86.96  E-value=0.71  Score=35.65  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|..++. .+++|.++|..+
T Consensus         8 ~Va-ViGaG~MG~giA~~~a~-~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVL-IVGSGLVGRSWAMLFAS-GGFRVKLYDIEP   39 (319)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             eEE-EECCcHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            466 99999999999999997 599999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=86.93  E-value=0.89  Score=33.84  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=27.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..+. |||+|..|..+|..|.+ .+..|.+++..
T Consensus         5 mki~-iiG~G~~G~~~a~~L~~-~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYA-VLGLGNGGHAFAAYLAL-KGQSVLAWDID   36 (359)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred             CeEE-EECCCHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            3577 99999999999999998 47889999764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.89  E-value=0.86  Score=35.27  Aligned_cols=34  Identities=26%  Similarity=0.206  Sum_probs=28.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...+. |||+|.-|..+|..|++ .+..|.+.+..+
T Consensus        29 ~mkI~-VIGaG~mG~alA~~La~-~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIA-ILGAGSWGTALALVLAR-KGQKVRLWSYES   62 (356)
T ss_dssp             CSCEE-EECCSHHHHHHHHHHHT-TTCCEEEECSCH
T ss_pred             CCeEE-EECccHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            34677 99999999999999998 478899988753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=86.78  E-value=0.85  Score=36.24  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       153 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HAT-VVGGGFIGLEMMESLHH-LGIKTTLLELADQV  186 (565)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCcEEEEEcCCcc
Confidence            577 99999999999999988 48899999998643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=86.76  E-value=0.77  Score=36.11  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       200 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMI-VVGGGVIGLELGSVWAR-LGAKVTVVEFLDTI  233 (491)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEeccccc
Confidence            467 99999999999999998 48899999988643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=86.73  E-value=0.59  Score=36.83  Aligned_cols=33  Identities=9%  Similarity=-0.024  Sum_probs=28.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++. +.+|.+++.++.
T Consensus       199 ~Vv-VVG~G~sg~eiA~~l~~~-g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVL-LVGSSYSAEDIGSQCYKY-GAKKLISCYRTA  231 (464)
T ss_dssp             EEE-EECCSTTHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             EEE-EEcCCCCHHHHHHHHHHh-CCeEEEEEECCC
Confidence            467 999999999999999984 788999998653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=86.67  E-value=0.84  Score=32.94  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       175 ~v~-vvG~G~~g~e~a~~l~~-~g~~v~~v~~~~~  207 (338)
T 3itj_A          175 PLA-VIGGGDSACEEAQFLTK-YGSKVFMLVRKDH  207 (338)
T ss_dssp             EEE-EECSSHHHHHHHHHHTT-TSSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cCCEEEEEEcCCc
Confidence            467 99999999999999998 4789999998764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.35  E-value=0.9  Score=34.10  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..+. |||+|..|..+|..|++ .+..|.++ ..
T Consensus        20 ~kI~-IiGaGa~G~~~a~~L~~-~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVA-IMGAGAVGCYYGGMLAR-AGHEVILI-AR   50 (318)
T ss_dssp             CEEE-EESCSHHHHHHHHHHHH-TTCEEEEE-CC
T ss_pred             CcEE-EECcCHHHHHHHHHHHH-CCCeEEEE-Ec
Confidence            4567 99999999999999998 47889888 54

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=86.18  E-value=1  Score=33.65  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|+.+|..|+  .+..|.++....
T Consensus         4 kI~-IiGaGa~G~~~a~~L~--~g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIG-IIGGGSVGLLCAYYLS--LYHDVTVVTRRQ   34 (307)
T ss_dssp             EEE-EECCSHHHHHHHHHHH--TTSEEEEECSCH
T ss_pred             EEE-EECCCHHHHHHHHHHh--cCCceEEEECCH
Confidence            567 9999999999999999  478999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.18  E-value=0.99  Score=33.24  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|.-|..+|..+++ .+.+|.+.+...
T Consensus         6 kV~-VIGaG~mG~~iA~~la~-~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVT-VLGTGVLGSQIAFQTAF-HGFAVTAYDINT   37 (283)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            355 99999999999999998 488999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=86.12  E-value=1  Score=34.47  Aligned_cols=34  Identities=35%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|..+..
T Consensus       154 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          154 NAV-VIGGGYIGLEAAAVLTK-FGVNVTLLEALPRV  187 (415)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             eEE-EECCCHHHHHHHHHHHh-cCCeEEEEecCCch
Confidence            467 99999999999999998 58899999998654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=85.99  E-value=1.1  Score=34.33  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|..+..
T Consensus       144 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          144 HVV-VIGAGFIGLEFAATARA-KGLEVDVVELAPRV  177 (404)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCEEEEEeCCCcc
Confidence            467 99999999999999988 48899999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=85.86  E-value=1  Score=35.16  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++..
T Consensus       174 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          174 DMV-IIGAGYIGLEIASIFRL-MGVQTHIIEMLDRA  207 (466)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCEEEEEEeCCcC
Confidence            467 99999999999999998 58899999998643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=85.82  E-value=0.9  Score=33.00  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=28.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       157 ~v~-viG~G~~g~e~a~~l~~-~g~~V~~i~~~~~  189 (319)
T 3cty_A          157 RVV-TIGGGNSGAIAAISMSE-YVKNVTIIEYMPK  189 (319)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT-TBSEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-hCCcEEEEEcCCc
Confidence            467 99999999999999997 4789999998753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=85.63  E-value=1.1  Score=35.04  Aligned_cols=33  Identities=18%  Similarity=0.073  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       189 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          189 RSV-IVGAGYIAVEMAGILSA-LGSKTSLMIRHDK  221 (478)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cEE-EECCCHHHHHHHHHHHH-cCCeEEEEEeCCc
Confidence            467 99999999999999998 4889999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=85.62  E-value=1.2  Score=32.52  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..++ |||+|..|+.+|..|+..+-.++.|+|.....
T Consensus        32 ~~Vl-VvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~   67 (249)
T 1jw9_B           32 SRVL-IVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   67 (249)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             CeEE-EEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcc
Confidence            4678 99999999999999998533489999987643

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=85.57  E-value=0.95  Score=35.84  Aligned_cols=34  Identities=21%  Similarity=0.101  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+.  ++.+|.++|.++.
T Consensus       189 ~vv-ViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          189 RAL-CVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            567 999999999999999874  1789999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=85.51  E-value=1.3  Score=33.23  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..|.+. +. .|.++|...
T Consensus         6 kI~-VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIA-VIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            566 999999999999999985 55 899998864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=85.47  E-value=0.74  Score=36.95  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|.+.             ...+|.+||+++.-
T Consensus       219 ~vv-VvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          219 SIV-VVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             ceE-EECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            477 999999999999888752             24689999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=85.42  E-value=0.97  Score=35.89  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+..  +.+|.+||.++.
T Consensus       193 ~vv-ViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          193 RVL-TVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            567 9999999999999998741  789999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=85.00  E-value=0.89  Score=33.70  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       165 ~vv-VvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~  197 (360)
T 3ab1_A          165 RVV-IVGGGDSALDWTVGLIK-NAASVTLVHRGHE  197 (360)
T ss_dssp             EEE-EECSSHHHHHHHHHTTT-TSSEEEEECSSSS
T ss_pred             cEE-EECCCHHHHHHHHHHHh-cCCEEEEEEcCCC
Confidence            567 99999999999999987 4789999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=84.99  E-value=1.1  Score=36.31  Aligned_cols=31  Identities=13%  Similarity=0.049  Sum_probs=27.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+++.+
T Consensus       288 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTL-VIGASYVALECAGFLAS-LGGDVTVMVRS  318 (598)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             EEE-EECCCHHHHHHHHHHHH-cCCEEEEEECC
Confidence            577 99999999999999998 47899999987

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=84.92  E-value=1.1  Score=36.35  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+++..+.
T Consensus       180 rV~-VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          180 RVG-VIGTGSTGQQVITSLAP-EVEHLTVFVRTPQ  212 (540)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT-TCSEEEEEESSCC
T ss_pred             eEE-EECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            577 99999999999999998 4789999999875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=84.89  E-value=0.81  Score=34.68  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||+|..|...+..|.+ .+.+|.||+...
T Consensus        15 ~VL-VVGgG~va~rka~~Ll~-~Ga~VtViap~~   46 (274)
T 1kyq_A           15 RIL-LIGGGEVGLTRLYKLMP-TGCKLTLVSPDL   46 (274)
T ss_dssp             EEE-EEEESHHHHHHHHHHGG-GTCEEEEEEEEE
T ss_pred             EEE-EECCcHHHHHHHHHHHh-CCCEEEEEcCCC
Confidence            567 99999999999999998 589999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=84.67  E-value=1.3  Score=34.44  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       149 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          149 TVA-VIGAGPIGMEAIDFLVK-MKKTVHVFESLENL  182 (452)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccCcc
Confidence            467 99999999999999998 58899999998643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=84.59  E-value=1.2  Score=32.94  Aligned_cols=29  Identities=21%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      +. |||+|..|..+|..|.+. +..|.+++.
T Consensus         3 I~-iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            3 VS-ILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EE-EESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EE-EECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            55 999999999999999984 789999987

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=84.46  E-value=0.84  Score=35.09  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=25.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEc
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLE   71 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIE   71 (107)
                      .+. |||+|..|..+|..|++..+..|.+++
T Consensus         4 kI~-ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVC-VCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEE-EECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEE-EECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            466 999999999999999863478999987

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=84.37  E-value=1.6  Score=32.19  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|.+ .+.+|.+++...
T Consensus        31 ~~I~-iIG~G~mG~~~a~~l~~-~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIG-FLGLGLMGSGIVSNLLK-MGHTVTVWNRTA   63 (316)
T ss_dssp             SCEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSG
T ss_pred             CeEE-EEcccHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence            4577 99999999999999987 478899988754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=84.35  E-value=1.6  Score=32.85  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=27.4

Q ss_pred             eEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~   74 (107)
                      +. |||+|..|..+|..|++. .+..|.++|...
T Consensus         3 I~-VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            3 IT-VIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EE-EECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EE-EECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            55 999999999999999984 268899999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=84.26  E-value=1.4  Score=35.22  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=29.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -.++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       215 ~~vv-ViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVV-VVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             CeEE-EECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence            3567 99999999999999998 48899999998643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=84.20  E-value=1.4  Score=34.36  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++..
T Consensus       182 ~v~-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          182 KLG-VIGAGVIGLELGSVWAR-LGAEVTVLEAMDKF  215 (476)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence            467 99999999999999998 48899999998643

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=84.19  E-value=1.4  Score=32.97  Aligned_cols=32  Identities=38%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ..+. |||+|.-|+.+|.+|.+ .+..|.+++..
T Consensus        15 ~kI~-iIG~G~mG~ala~~L~~-~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFF-VLGAGSWGTVFAQMLHE-NGEEVILWARR   46 (335)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred             CcEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCC
Confidence            4567 99999999999999998 47899998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=84.17  E-value=1.3  Score=35.55  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       189 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          189 HAT-VIGGGFIGVEMVENLRE-RGIEVTLVEMANQV  222 (588)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCCcc
Confidence            467 99999999999999998 58899999987643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=83.76  E-value=1.3  Score=32.43  Aligned_cols=32  Identities=9%  Similarity=0.172  Sum_probs=27.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      -.++ |||+|..|...+..|.+ .+.+|.|++..
T Consensus        32 k~VL-VVGgG~va~~ka~~Ll~-~GA~VtVvap~   63 (223)
T 3dfz_A           32 RSVL-VVGGGTIATRRIKGFLQ-EGAAITVVAPT   63 (223)
T ss_dssp             CCEE-EECCSHHHHHHHHHHGG-GCCCEEEECSS
T ss_pred             CEEE-EECCCHHHHHHHHHHHH-CCCEEEEECCC
Confidence            3577 99999999999999998 48899999764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=83.75  E-value=1.1  Score=36.32  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++. +.+|.+++..+.
T Consensus       187 rV~-VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVG-VIGTGATGVQIIPIAAET-AKELYVFQRTPN  219 (545)
T ss_dssp             EEE-EECCSHHHHHHHHHHTTT-BSEEEEEESSCC
T ss_pred             eEE-EECCCccHHHHHHHHHhh-CCEEEEEEcCCC
Confidence            567 999999999999999984 789999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=83.75  E-value=1.6  Score=31.20  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+. +.+|.+++.++..
T Consensus       156 ~v~-vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~  189 (323)
T 3f8d_A          156 VVA-VIGGGDSALEGAEILSSY-STKVYLIHRRDTF  189 (323)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-SSEEEEECSSSSC
T ss_pred             EEE-EECCCHHHHHHHHHHHHh-CCeEEEEEeCCCC
Confidence            567 999999999999999984 8899999988643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=83.56  E-value=1.4  Score=34.68  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       184 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          184 HLI-VVGSGVTGAEFVDAYTE-LGVPVTVVASQDHV  217 (499)
T ss_dssp             SEE-EESCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            567 99999999999999998 48899999988643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=83.42  E-value=0.66  Score=32.85  Aligned_cols=31  Identities=13%  Similarity=0.009  Sum_probs=26.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|..|.+. +. |.++|..+
T Consensus        11 ~vi-I~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A           11 HVV-ICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             EEE-EESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             EEE-EECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            577 999999999999999874 66 99998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=83.15  E-value=1.5  Score=34.27  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+..+.+|.++|.++.
T Consensus       161 ~vv-ViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~  194 (472)
T 3iwa_A          161 KAV-IVGGGFIGLEMAVSLADMWGIDTTVVELADQ  194 (472)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHHCCEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHHhcCCcEEEEEccCc
Confidence            577 9999999999999998842789999999764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=82.98  E-value=1.3  Score=35.94  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++. +.+|.+++..+.
T Consensus       193 rV~-VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVG-VIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             EEE-EECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            567 999999999999999984 789999999874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=82.84  E-value=2  Score=32.01  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=28.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||.|..|..+|..|.+ .+.+|.+.+...
T Consensus        22 ~~I~-iIG~G~mG~~~A~~l~~-~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVG-FLGLGIMGKAMSMNLLK-NGFKVTVWNRTL   54 (310)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSG
T ss_pred             CEEE-EECccHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            4566 99999999999999998 478999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.81  E-value=1.3  Score=35.35  Aligned_cols=31  Identities=39%  Similarity=0.606  Sum_probs=27.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|||..|..+|..|.+  +.+|-+||...
T Consensus       237 ~v~-I~GgG~ig~~lA~~L~~--~~~v~iIE~d~  267 (461)
T 4g65_A          237 RIM-IVGGGNIGASLAKRLEQ--TYSVKLIERNL  267 (461)
T ss_dssp             EEE-EECCSHHHHHHHHHHTT--TSEEEEEESCH
T ss_pred             EEE-EEcchHHHHHHHHHhhh--cCceEEEecCH
Confidence            567 99999999999999965  58999999865

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.76  E-value=1.6  Score=32.79  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=26.1

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCC--eEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHW--SVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~--~VlvIEag~   74 (107)
                      +. |||+|..|..+|..|... +.  .|.++|...
T Consensus         3 I~-VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            3 VG-VVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EE-EECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EE-EECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            55 999999999999999874 56  899998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=82.61  E-value=1.9  Score=32.82  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~   74 (107)
                      .+. |||+|..|..+|..|+.. +. .|.++|...
T Consensus        16 kI~-ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           16 KIS-IIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             EEE-EECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            577 999999999999999984 55 899998864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=82.42  E-value=1.7  Score=34.13  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=28.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.+.
T Consensus       187 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTL-VVGASYVALECAGFLTG-IGLDTTVMMRSI  218 (488)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCceEEEEcCc
Confidence            467 99999999999999998 488999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=82.15  E-value=2  Score=30.61  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+. +.+|.+++.++.
T Consensus       149 ~v~-viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~  181 (315)
T 3r9u_A          149 EVA-VLGGGDTALEEALYLANI-CSKIYLIHRRDE  181 (315)
T ss_dssp             EEE-EECCBHHHHHHHHHHHTT-SSEEEEECSSSS
T ss_pred             EEE-EECCCHHHHHHHHHHHhh-CCEEEEEEeCCC
Confidence            567 999999999999999984 789999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=82.11  E-value=1.5  Score=35.11  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|++. +.+|.+++.++.
T Consensus       357 ~V~-ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~~  389 (521)
T 1hyu_A          357 RVA-VIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE  389 (521)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-BSEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHhh-CCEEEEEEeCcc
Confidence            567 999999999999999984 789999998754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=81.89  E-value=2.6  Score=30.14  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |.|+|..|..++.+|.+. +.+|.++.....
T Consensus         5 ~il-VtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KIL-IAGCGDLGLELARRLTAQ-GHEVTGLRRSAQ   37 (286)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHT-TCCEEEEECTTS
T ss_pred             cEE-EECCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            477 999999999999999984 788988877643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=81.72  E-value=1.8  Score=34.19  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHH-------------------hcCC-eEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSE-------------------VAHW-SVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~-------------------~~~~-~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+                   ..+. +|.||+.++.
T Consensus       147 ~vv-VIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          147 TAV-ILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             EEE-EESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             EEE-EECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            567 99999999999999983                   2355 7999998763

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=81.66  E-value=2  Score=33.73  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus       193 ~v~-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  225 (484)
T 3o0h_A          193 SIV-IVGGGYIGVEFANIFHG-LGVKTTLLHRGDL  225 (484)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cEE-EECcCHHHHHHHHHHHH-cCCeEEEEECCCc
Confidence            567 99999999999999987 4889999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=81.63  E-value=2.3  Score=31.94  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=27.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++ |+|||..|..++..+.+ -+++|.+++..++
T Consensus         4 I~-ilGgg~~g~~~~~~Ak~-~G~~vv~vd~~~~   35 (363)
T 4ffl_A            4 IC-LVGGKLQGFEAAYLSKK-AGMKVVLVDKNPQ   35 (363)
T ss_dssp             EE-EECCSHHHHHHHHHHHH-TTCEEEEEESCTT
T ss_pred             EE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence            55 99999999999888776 5999999987654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=81.63  E-value=1.8  Score=34.83  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=28.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||.|..|+.+|..|++ .+.+|.+++...
T Consensus         9 ~~I~-VIG~G~vG~~lA~~la~-~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLT-IIGSGSVGLVTGACLAD-IGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             ceEE-EECcCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            4667 99999999999999998 478999998743

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=81.40  E-value=2.1  Score=29.53  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             eEEEeC-ccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          42 FPVSLG-GGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        42 ~i~IvG-~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      +. |+| +|..|..+|.+|.+ .+.+|.+++..
T Consensus         3 i~-iiGa~G~~G~~ia~~l~~-~g~~V~~~~r~   33 (212)
T 1jay_A            3 VA-LLGGTGNLGKGLALRLAT-LGHEIVVGSRR   33 (212)
T ss_dssp             EE-EETTTSHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred             EE-EEcCCCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            55 899 99999999999997 47889998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=81.31  E-value=2.2  Score=30.08  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=27.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|.+. +.+|.+++...
T Consensus        29 ~~I~-iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVG-ILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEE-EECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEE-EEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3577 999999999999999874 67898887653

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=81.24  E-value=2.4  Score=31.35  Aligned_cols=33  Identities=24%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||.|..|..+|..|.+ .+.+|.+.+..+
T Consensus         8 ~~I~-iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVG-IVGLGSMGMGAARSCLR-AGLSTWGADLNP   40 (303)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CeEE-EECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            3566 99999999999999998 478999987653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=81.22  E-value=1.4  Score=31.14  Aligned_cols=34  Identities=21%  Similarity=0.541  Sum_probs=27.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEE-EcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLL-LEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~Vlv-IEag~   74 (107)
                      ...+. |||+|..|..+|..|.+. +.+|.+ .+...
T Consensus        23 mmkI~-IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYA-IIGAGAIGSALAERFTAA-QIPAIIANSRGP   57 (220)
T ss_dssp             SCCEE-EEECHHHHHHHHHHHHHT-TCCEEEECTTCG
T ss_pred             CCEEE-EECCCHHHHHHHHHHHhC-CCEEEEEECCCH
Confidence            34677 999999999999999984 778887 66543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=80.90  E-value=1.9  Score=30.94  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+. +.+|.+++.++.
T Consensus       156 ~v~-vvG~g~~~~e~a~~l~~~-~~~v~~~~~~~~  188 (332)
T 3lzw_A          156 RVA-ILGGGDSAVDWALMLEPI-AKEVSIIHRRDK  188 (332)
T ss_dssp             EEE-EECSSHHHHHHHHHHTTT-BSEEEEECSSSS
T ss_pred             EEE-EECCCHhHHHHHHHHHhh-CCeEEEEEecCc
Confidence            467 999999999999999874 789999998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=80.84  E-value=2.8  Score=33.93  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+. |||+|.-|..+|..+++ .+..|.++|....
T Consensus        56 kVa-VIGaG~MG~~IA~~la~-aG~~V~l~D~~~e   88 (460)
T 3k6j_A           56 SVA-IIGGGTMGKAMAICFGL-AGIETFLVVRNEQ   88 (460)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEEECcHH
Confidence            455 99999999999999998 5899999987643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=80.75  E-value=1.9  Score=34.33  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.+++.+
T Consensus       212 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTL-VVGASYVALECAGFLAG-IGLDVTVMVRS  242 (519)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEE-EECCcHHHHHHHHHHHH-cCCeEEEEecc
Confidence            467 99999999999999998 48899999985

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=80.71  E-value=2.3  Score=30.69  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||+|..|+-+|..|.+. + +|.+++.+.
T Consensus       165 ~v~-VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          165 RVA-IIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             EEE-EECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             EEE-EECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            567 999999999999999985 3 688888774

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=80.68  E-value=2.5  Score=30.45  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=25.6

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      +. |||+|..|..+|..|.+. +.+|.+++..
T Consensus         3 i~-iiG~G~~G~~~a~~l~~~-g~~V~~~~~~   32 (279)
T 2f1k_A            3 IG-VVGLGLIGASLAGDLRRR-GHYLIGVSRQ   32 (279)
T ss_dssp             EE-EECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EE-EEcCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            45 999999999999999984 6789988764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=80.44  E-value=2.4  Score=33.53  Aligned_cols=34  Identities=21%  Similarity=0.120  Sum_probs=27.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+.+....+|.+++.+..
T Consensus       266 ~Vv-VIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          266 HVV-VLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             EEE-EECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            577 9999999999998887743346999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=80.37  E-value=1.6  Score=30.84  Aligned_cols=32  Identities=9%  Similarity=0.042  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..|.+. + +|.+++.+..
T Consensus       143 ~v~-vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          143 KIG-VIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             EEE-EECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             EEE-EEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            567 999999999999999985 5 9999988764

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.30  E-value=3  Score=32.62  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...++ |||+|..|+.+|..|+..+--++.|+|.+...
T Consensus        34 ~~~Vl-IvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVL-LLGAGTLGCYVSRALIAWGVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEE-EECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCEEE-EECCCHHHHHHHHHHHHcCCCEEEEecCCEec
Confidence            35678 99999999999999998644578899887654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=80.28  E-value=2.6  Score=30.24  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ..+. |||.|..|..+|..|.+ .+.+|.+.+...
T Consensus        20 ~kIg-iIG~G~mG~alA~~L~~-~G~~V~~~~r~~   52 (245)
T 3dtt_A           20 MKIA-VLGTGTVGRTMAGALAD-LGHEVTIGTRDP   52 (245)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CeEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCh
Confidence            4566 99999999999999998 478999987754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=80.28  E-value=2.4  Score=32.99  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|..|+-+|..+.+ .+.+|.+++.++.
T Consensus       172 ~v~-ViGgG~~g~e~A~~l~~-~g~~Vt~v~~~~~  204 (463)
T 4dna_A          172 SIL-IAGGGYIAVEFANIFHG-LGVKTTLIYRGKE  204 (463)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence            567 99999999999999988 4889999998864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=80.15  E-value=2.7  Score=29.90  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcC----CeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAH----WSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~----~~VlvIEag~~   75 (107)
                      .+. |||.|.-|..+|..|.+. +    ..|.+.+....
T Consensus         6 ~i~-iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            6 KLG-FMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             EEE-EECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            466 999999999999999874 5    68999887643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=80.06  E-value=2.3  Score=34.85  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=29.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC---eEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW---SVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~---~VlvIEag~~   75 (107)
                      ..++ |||+|..|.++|..|.++++.   .|++++....
T Consensus        14 ~rVl-IIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           14 NRFV-ILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             SCEE-EECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             CCEE-EECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            3577 999999999999999997766   7999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	9e-21
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	3e-19
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	8e-18
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-15
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	1e-12
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-11
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	3e-11
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.004

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 83.0 bits (204), Expect = 9e-21
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           GGG  G  VA++L+E     VL++E G    ++  + + P+    +  +  D  Y T P
Sbjct: 31  GGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP 89

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 78.8 bits (193), Expect = 3e-19
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEPT 103
           GGG  G   A+RL+E  + SVL++E+G    D   + +  +    +  S  D  Y+T   
Sbjct: 24  GGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL 83

Query: 104 G 104
            
Sbjct: 84  A 84

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 74.5 bits (182), Expect = 8e-18
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEP 102
           GGG++G  +A+ LSE   + VL+LE G       +V +   ++   + +   KT  
Sbjct: 33  GGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPV 86

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 68.1 bits (165), Expect = 2e-15
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQ 106
           G G  G   A  L   A + V + + G  ++ +         ++  K   ++     G+ 
Sbjct: 11  GSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQL 69

Query: 107 C 107
            
Sbjct: 70  M 70

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 60.0 bits (144), Expect = 1e-12
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLS--------KFDWQY 98
           G G  G + A RLSE A   VLLLE G    + T    +A W   S              
Sbjct: 9   GAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESL 67

Query: 99  KTEP 102
            T+ 
Sbjct: 68  FTDS 71

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 56.9 bits (136), Expect = 1e-11
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAA--WLQLSKFDWQYKTEP 102
           G G  GAV A RL++ A     ++E G   +       +         +  W      
Sbjct: 14  GSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTD 70

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 56.1 bits (134), Expect = 3e-11
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 47  GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSL--AAWLQLSKFDWQYKTEPT 103
           G G   AV A RL E A    L+LE G   N+     ++         +  W       
Sbjct: 9   GTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 66

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.9 bits (73), Expect = 0.004
 Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
          LG G    +++  +S      VL ++  P
Sbjct: 12 LGTGLTECILSGIMSV-NGKKVLHMDRNP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.6
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.54
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.19
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.14
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.06
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.97
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.93
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.68
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.51
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.5
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.5
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.5
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.49
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.49
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.45
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.44
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.41
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.4
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.39
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.38
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.37
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.33
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.31
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.3
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.29
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.27
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.27
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.26
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.26
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.25
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.25
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.22
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.21
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.17
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.16
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.14
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.14
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.13
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.12
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.06
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.05
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.04
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.03
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.97
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.96
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.9
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.85
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.81
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.79
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.64
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.58
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.57
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.53
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.35
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.32
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.31
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.24
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.05
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.64
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.59
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.52
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.44
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.39
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.39
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.36
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.18
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.13
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.97
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.91
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.84
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.82
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.39
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.31
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.27
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.25
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.99
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.89
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.87
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.6
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.46
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.76
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.13
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.62
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.41
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.59
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.31
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.98
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.79
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	89.77
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.43
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.08
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.05
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	85.23
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.8
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	84.71
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.67
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	84.37
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.13
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	83.99
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	83.17
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	82.43
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	82.05
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.89
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	81.76
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.26
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	81.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	80.59
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.4
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	80.38
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.18
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	80.12
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	80.02

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.60  E-value=3.2e-16  Score=121.35  Aligned_cols=68  Identities=28%  Similarity=0.333  Sum_probs=58.1

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---CcccchhhhhhccCCCccceeeeeeCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSLAAWLQLSKFDWQYKTEPTGK  105 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~~~~l~~s~~dW~y~T~PQ~~  105 (107)
                      ..+|||| |||+|++|+++|.||+|+++.+|||||+|+...   ...++|..+..+.++.+||+|.|+||.+
T Consensus        22 ~~tyD~I-IVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~   92 (391)
T d1gpea1          22 GKTYDYI-IAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLIN   92 (391)
T ss_dssp             TCEEEEE-EECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCTT
T ss_pred             CCeeeEE-EECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecCC
Confidence            3579999 999999999999999998779999999998653   2456787777777889999999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.54  E-value=2.8e-15  Score=115.20  Aligned_cols=68  Identities=28%  Similarity=0.300  Sum_probs=56.1

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---CcccchhhhhhccCCCccceeeeeeCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSLAAWLQLSKFDWQYKTEPTG  104 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~~~~l~~s~~dW~y~T~PQ~  104 (107)
                      ..+.|||| |||+|++|+++|.||+|+++.+|||||+|+...   +....|..+..+..+.+||.|.++|+.
T Consensus        14 ~~~tyD~I-IVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~   84 (385)
T d1cf3a1          14 SGRTVDYI-IAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA   84 (385)
T ss_dssp             TTCEEEEE-EECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT
T ss_pred             cCCeEEEE-EECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC
Confidence            34579999 999999999999999998789999999997643   234566666666788999999998763

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.19  E-value=9.9e-13  Score=100.11  Aligned_cols=39  Identities=38%  Similarity=0.597  Sum_probs=34.2

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ....|||| |||+|+||+++|.||++  +.+|||||+|+...
T Consensus        23 ~~~~YD~I-IVGsG~aG~vlA~rLae--~~kVLvLEaG~~~~   61 (351)
T d1ju2a1          23 LEGSYDYV-IVGGGTSGCPLAATLSE--KYKVLVLERGSLPT   61 (351)
T ss_dssp             SEEEEEEE-EECCSTTHHHHHHHHTT--TSCEEEECSSBCGG
T ss_pred             ccCCccEE-EECccHHHHHHHHHhcC--CCCEEEEecCCCCc
Confidence            34569999 99999999999999998  38999999998643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.14  E-value=4.1e-11  Score=90.98  Aligned_cols=65  Identities=29%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCC---cc-cchhhhhh-cc---CCCccceeeeeeCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENE---VT-DVPSLAAW-LQ---LSKFDWQYKTEPTGK  105 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~---~~-~iP~~~~~-l~---~s~~dW~y~T~PQ~~  105 (107)
                      .|||| |||+|++|+++|.||++. +.+|+|||+|+....   .. ..+..... ..   .+..+|.+.+.||++
T Consensus         2 ~YD~I-IVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (360)
T d1kdga1           2 PYDYI-IVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF   74 (360)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT
T ss_pred             cCCEE-EECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc
Confidence            59999 999999999999999995 789999999975431   11 11211111 11   133567777777765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.06  E-value=1.7e-11  Score=90.08  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ..+|||| |||+|.+|+++|.+|++ .+.+|+|||+|+...
T Consensus         2 d~~yDvi-IVGsG~aG~v~A~~La~-~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           2 DIKYDVV-IVGSGPIGCTYARELVG-AGYKVAMFDIGEIDS   40 (379)
T ss_dssp             CSEEEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCCCS
T ss_pred             CCcccEE-EECcCHHHHHHHHHHhh-CCCeEEEEecCCCCC
Confidence            4579999 99999999999999999 689999999997653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=5.1e-10  Score=74.66  Aligned_cols=38  Identities=21%  Similarity=0.127  Sum_probs=34.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...||+| |||+|.+|+++|.+|++ .+.+|+|||+++..
T Consensus         3 ~~~yDvi-ViGaG~~Gl~~A~~La~-~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           3 DTDYDVI-VLGTGITECILSGLLSV-DGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            4579999 99999999999999998 58999999998643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.73  E-value=5.7e-09  Score=77.72  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..++|+| |||+|.+|+++|.+|++ .+++|+|||+|..
T Consensus         5 ~~~~dvI-VVGsG~aG~v~A~rLae-aG~~VlvLEaG~~   41 (370)
T d3coxa1           5 GDRVPAL-VIGSGYGGAVAALRLTQ-AGIPTQIVEMGRS   41 (370)
T ss_dssp             TCEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCC
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            3579999 99999999999999999 5899999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.68  E-value=1.1e-08  Score=75.96  Aligned_cols=35  Identities=37%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +|+| |||+|.+|+++|.||++ .+.+|+|||+|...
T Consensus         3 v~VI-VVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~   37 (367)
T d1n4wa1           3 VPAV-VIGTGYGAAVSALRLGE-AGVQTLMLEMGQLW   37 (367)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred             CeEE-EeCcCHHHHHHHHHHHH-CcCeEEEEecCCCC
Confidence            6899 99999999999999999 58999999999643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.55  E-value=3.6e-08  Score=70.41  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+||++ |||+|.+|+++|++|++ .+.+|+|||+...
T Consensus         2 ~~yDvv-IIGaGi~Gls~A~~La~-~G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVI-VVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            579999 99999999999999998 5899999999653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.51  E-value=5.1e-08  Score=69.11  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+||++ |||+|.+|+++|++|++ .+.+|+|||++..
T Consensus         3 ~~~Dvv-IIGaGi~Gls~A~~La~-~G~~V~vlE~~~~   38 (276)
T d1ryia1           3 RHYEAV-VIGGGIIGSAIAYYLAK-ENKNTALFESGTM   38 (276)
T ss_dssp             SEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             ccCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            469999 99999999999999998 4899999999753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.4e-08  Score=65.76  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+.+++ |||+|.+|+++|.+|++ .+.+|+|+|+.+.
T Consensus         3 ~~~~kVi-VIGaG~aGL~aA~~L~~-~G~~V~VlEa~~r   39 (449)
T d2dw4a2           3 KKTGKVI-IIGSGVSGLAAARQLQS-FGMDVTLLEARDR   39 (449)
T ss_dssp             SCCCEEE-EECCBHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCCcEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            3456789 99999999999999998 5899999999754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.50  E-value=5e-08  Score=66.91  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++||++ |||+|+||+.+|..+++ .+.+|+|||+...
T Consensus         2 ~kYDvi-IIGgGpAGl~aA~~aar-~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVI-VIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEE-EECCSHHHHHHHHHHHH-HTCCEEEEECCBC
T ss_pred             CcCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            579999 99999999999999998 5899999998653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.50  E-value=5.5e-08  Score=68.18  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +||++ |||+|++|+.+|..|++ .+.+|+|||++..
T Consensus         2 ~yDVi-IIGaG~aGl~aA~~la~-~G~~V~liEk~~~   36 (251)
T d2i0za1           2 HYDVI-VIGGGPSGLMAAIGAAE-EGANVLLLDKGNK   36 (251)
T ss_dssp             CCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            59999 99999999999999998 5899999999764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=4.7e-08  Score=72.22  Aligned_cols=36  Identities=31%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +||++ |||||.+|+++|.+|++ .+.+|+|||+.+.-
T Consensus         1 M~dv~-IIGaG~sGl~~A~~L~~-~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           1 MYDYI-IVGSGLFGAVCANELKK-LNKKVLVIEKRNHI   36 (298)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHGG-GTCCEEEECSSSSS
T ss_pred             CccEE-EECCcHHHHHHHHHHHh-CCCcEEEEECCCCc
Confidence            48999 99999999999999998 48999999997643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.49  E-value=5.2e-08  Score=74.73  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHH-----hcCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSE-----VAHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~-----~~~~~VlvIEag~~~   76 (107)
                      ..||+| |||||+||+++|.+|++     ..+++|+|||++...
T Consensus        31 ~e~DVi-IVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          31 EEADVV-IVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             ccCCEE-EECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            359999 99999999999999986     369999999998754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.45  E-value=8.2e-08  Score=69.62  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +.++||++ |||+|.+|+++|.+|++ .+.+|+|||+++..
T Consensus        13 p~e~~DVl-VIG~G~aGl~aA~~la~-~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          13 PHDTVDVV-VVGSGGAGFSAAISATD-SGAKVILIEKEPVI   51 (308)
T ss_dssp             CSEECSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            44579999 99999999999999998 58999999997643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.44  E-value=6.9e-08  Score=68.87  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +.+|+| |||+|+||+.+|..|++ .+.+|+|||+++.
T Consensus         3 ~~~DVi-IIGaG~aGl~aA~~la~-~G~~V~vlEk~~~   38 (253)
T d2gqfa1           3 QYSENI-IIGAGAAGLFCAAQLAK-LGKSVTVFDNGKK   38 (253)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCcEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            468999 99999999999999998 4899999999864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.41  E-value=1.3e-07  Score=62.20  Aligned_cols=34  Identities=35%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      .|++ |||||.+|+++|.+|++. +. +|+|+|+.+.
T Consensus         1 P~V~-IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVI-VVGAGMSGISAAKRLSEA-GITDLLILEATDH   35 (347)
T ss_dssp             CCEE-EECCBHHHHHHHHHHHHT-TCCCEEEECSSSS
T ss_pred             CCEE-EECCcHHHHHHHHHHHhC-CCCcEEEEECCCC
Confidence            3788 999999999999999984 65 6999999754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.40  E-value=1.2e-07  Score=64.72  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .|++ |||+|.+|+++|.+|++ .+.+|+|+|+.+.
T Consensus         1 m~V~-IIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVA-VVGGGISGLAVAHHLRS-RGTDAVLLESSAR   34 (347)
T ss_dssp             CCEE-EECCBHHHHHHHHHHHT-TTCCEEEECSSSS
T ss_pred             CeEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            3788 99999999999999998 4899999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.3e-07  Score=65.45  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+||++ |||+|+||+.+|.++++ .+.+|+|||++..
T Consensus         1 k~yDvv-VIG~G~aG~~aA~~a~~-~G~kV~iiE~~~~   36 (217)
T d1gesa1           1 KHYDYI-AIGGGSGGIASINRAAM-YGQKCALIEAKEL   36 (217)
T ss_dssp             CEEEEE-EECCSHHHHHHHHHHHT-TTCCEEEEESSCT
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCEEEEEeccCc
Confidence            369999 99999999999999998 5899999999753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1e-07  Score=65.98  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+||++ |||+|+||+.+|..+++ .+.+|+|||+.+.
T Consensus         3 ~~~yDvi-VIG~GpAGl~aA~~aa~-~G~kV~lie~~~~   39 (233)
T d1v59a1           3 NKSHDVV-IIGGGPAGYVAAIKAAQ-LGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcccCEE-EECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            3579999 99999999999999998 5899999998654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.37  E-value=1.8e-07  Score=64.42  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|..+++ .+.+|+|||+++.
T Consensus         2 ~~yDvv-VIGgGpaGl~aA~~aa~-~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVV-IIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEE-EECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             CcCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            469999 99999999999999998 5899999998654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.3e-07  Score=65.52  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=29.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      |++ |||+|.+|+++|.+|++ .+.+|+|||+..
T Consensus         1 DVi-VIGaG~aGL~aA~~L~~-~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVV-VVGGGISGMAAAKLLHD-SGLNVVVLEARD   32 (383)
T ss_dssp             SEE-EECCBHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence            788 99999999999999998 589999999865

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.31  E-value=2.7e-07  Score=62.54  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||+|.||+++|.+|++ .+.+|+|||+++.
T Consensus         3 kV~-IIGaG~aGL~aA~~La~-~G~~V~vlE~~~~   35 (373)
T d1seza1           3 RVA-VIGAGVSGLAAAYKLKI-HGLNVTVFEAEGK   35 (373)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TSCEEEEECSSSS
T ss_pred             EEE-EECcCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            367 99999999999999998 5899999999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=2.5e-07  Score=66.84  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||+|++|+.+|.+|++..+.+|+|||+++.
T Consensus        32 ~e~DVi-VIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVV-VVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEE-EECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEE-EECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            468999 9999999999999998756999999999764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=3e-07  Score=64.15  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=32.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .||++ |||+|+||+.+|.++++ .+.+|+|||++..
T Consensus         3 dYDvi-VIG~GpaGl~aA~~aa~-~G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLI-IIGGGSGGLAAAKEAAK-FDKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEE-EECCSHHHHHHHHHHGG-GCCCEEEECCCCC
T ss_pred             cCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            58999 99999999999999998 5999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.29  E-value=2.5e-07  Score=67.49  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|.||+++|.++++ .+.+|+|||++..
T Consensus         4 ~~~DVv-VIG~G~AGl~AAl~aa~-~G~~V~liEK~~~   39 (336)
T d2bs2a2           4 QYCDSL-VIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (336)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             eecCEE-EECcCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            458999 99999999999999998 5899999999754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.7e-07  Score=62.96  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+||++ |||+|++|+.+|.++++ .+.+|+|||++..
T Consensus         2 ~~yDvi-IIG~GpaG~~aA~~aar-~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYL-VIGGGSGGLASARRAAE-LGARAAVVESHKL   37 (221)
T ss_dssp             EECSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             CccCEE-EECCCHHHHHHHHHHHH-CCCEEEEEeccCC
Confidence            369999 99999999999999998 5899999998754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.27  E-value=4e-07  Score=62.45  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .||++ |||+|+||+.+|..+++ .+.+|+|||++...
T Consensus         3 ~~Dvi-VIG~GpaGl~aA~~aar-~G~kV~vIEk~~~G   38 (223)
T d1ebda1           3 ETETL-VVGAGPGGYVAAIRAAQ-LGQKVTIVEKGNLG   38 (223)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSCTT
T ss_pred             cCCEE-EECCCHHHHHHHHHHHH-CCCEEEEEecCCCC
Confidence            58999 99999999999999998 58999999998643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.26  E-value=4e-07  Score=63.74  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|..+++ .+.+|+|||+.+.
T Consensus         5 ~dyDvi-IIG~GPaGlsaA~~aa~-~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVV-VLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CccCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            469999 99999999999999998 5899999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.26  E-value=5.5e-07  Score=62.84  Aligned_cols=35  Identities=29%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+++ |||+|.+|+++|.+|++. +.+|+|+|+.+.
T Consensus        30 pkkV~-IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~   64 (370)
T d2iida1          30 PKHVV-IVGAGMAGLSAAYVLAGA-GHQVTVLEASER   64 (370)
T ss_dssp             CCEEE-EECCBHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             CCeEE-EECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            35899 999999999999999984 899999999753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.25  E-value=6.6e-07  Score=61.37  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+.+++ |||+|.+|+++|.+|++ .+.+|+|||++.
T Consensus         5 ~~~kVv-VIGaGiaGl~~A~~L~~-~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVV-VLGSGVIGLSSALILAR-KGYSVHILARDL   39 (268)
T ss_dssp             CSCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCcEE-EECccHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            345899 99999999999999998 588999999865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.25  E-value=4.1e-07  Score=66.58  Aligned_cols=38  Identities=32%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+++|++ |||+|.+|+.+|.+|++ .+.+|+|||+++.
T Consensus        20 ~~et~DVv-VIG~G~aGl~aA~~la~-~G~~V~llEk~~~   57 (322)
T d1d4ca2          20 VKETTDVV-IIGSGGAGLAAAVSARD-AGAKVILLEKEPI   57 (322)
T ss_dssp             CCEECSEE-EECSSHHHHHHHHHHHT-TTCCEEEECSSSS
T ss_pred             CCCcceEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            45578999 99999999999999998 5899999999764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.22  E-value=3.7e-07  Score=67.04  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=35.4

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +.+.+++|+| |||+|.+|+.+|.++++ .+.+|+|||+++..
T Consensus        14 ~~~~e~~DVv-VIGaG~aGl~AA~~aa~-~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          14 AGPSETTQVL-VVGAGSAGFNASLAAKK-AGANVILVDKAPFS   54 (317)
T ss_dssp             TCCSEEEEEE-EECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CCCCCccCEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3445679999 99999999999999998 48999999998654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=5.2e-07  Score=65.68  Aligned_cols=39  Identities=36%  Similarity=0.550  Sum_probs=33.0

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+..+||+| |||+|.||+++|..+++ .+ +|+|||+++..
T Consensus         3 ~p~~~~DVv-VVG~G~AGl~AA~~a~~-~g-~V~llEK~~~~   41 (305)
T d1chua2           3 LPEHSCDVL-IIGSGAAGLSLALRLAD-QH-QVIVLSKGPVT   41 (305)
T ss_dssp             CCSEECSEE-EECCSHHHHHHHHHHTT-TS-CEEEECSSCTT
T ss_pred             CCcccCCEE-EECccHHHHHHHHHhhc-CC-CEEEEECCCCC
Confidence            345679999 99999999999999887 35 99999998643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.19  E-value=9.1e-07  Score=61.01  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=31.9

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|.++++....+|+|+|....
T Consensus         2 ~~YDvi-IIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLV-VIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEE-EECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEE-EECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            479999 9999999999999999855568999998643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.18  E-value=7.8e-07  Score=63.68  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ||++ |||+|++|+.+|.++++ .+.+|+|||++..
T Consensus         2 yDvi-VIG~G~aG~~aA~~aa~-~G~~V~liE~~~~   35 (259)
T d1onfa1           2 YDLI-VIGGGSGGMAAARRAAR-HNAKVALVEKSRL   35 (259)
T ss_dssp             BSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSST
T ss_pred             ceEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            8999 99999999999999998 5899999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.17  E-value=5.9e-07  Score=64.67  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHH----hcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSE----VAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~----~~~~~VlvIEag~~~   76 (107)
                      ...||++ |||||++|+++|..|++    ..+++|+|||+.+..
T Consensus         5 ~~~yDV~-IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVL-IVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEE-EECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEE-EECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            3469999 99999999999999974    358999999997654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.16  E-value=7.8e-07  Score=61.75  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..||++ |||+|++|+.+|.++++ .+.+|+|||++..
T Consensus         3 ~~~~Dlv-VIG~GpaGl~aA~~aa~-~G~~V~liE~~~~   39 (220)
T d1lvla1           3 TIQTTLL-IIGGGPGGYVAAIRAGQ-LGIPTVLVEGQAL   39 (220)
T ss_dssp             CEECSEE-EECCSHHHHHHHHHHHH-HTCCEEEECSSCT
T ss_pred             ccccCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            3469999 99999999999999998 4899999998754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=1e-06  Score=59.09  Aligned_cols=33  Identities=24%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .||++ |||||++|+.+|..+++ .+.+|+|||..
T Consensus         1 ~yDVi-IIGgGpaGl~AAi~aar-~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVL-IVGSGPAGAAAAIYSAR-KGIRTGLMGER   33 (184)
T ss_dssp             CEEEE-EECCSHHHHHHHHHHHT-TTCCEEEECSS
T ss_pred             CCcEE-EECcCHHHHHHHHHHHH-cCCeEEEEEEe
Confidence            38999 99999999999999988 58999999974

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.4e-07  Score=66.22  Aligned_cols=38  Identities=26%  Similarity=0.183  Sum_probs=33.7

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +..+||+| |||+|.||+.+|.++++ .+.+|+|||+++.
T Consensus         4 ~~~~~DVl-VVG~G~AGl~AAl~aa~-~G~~V~lleK~~~   41 (330)
T d1neka2           4 PVREFDAV-VIGAGGAGMRAALQISQ-SGQTCALLSKVFP   41 (330)
T ss_dssp             CEEEESCE-EECCSHHHHHHHHHHHH-TTCCCEEECSSCG
T ss_pred             CcccCCEE-EECcCHHHHHHHHHHHH-cCCeEEEEeCCCC
Confidence            45579999 99999999999999998 4889999999754

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.13  E-value=1.1e-06  Score=64.31  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             ccceEEEeCccHHHHHHHHHHHH---hcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSE---VAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~---~~~~~VlvIEag~~~   76 (107)
                      .+|+| |||+|.||+++|.++++   ..+.+|+|||++...
T Consensus        21 e~DVl-IIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDIL-IIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEE-EECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            58999 99999999999999875   368999999997654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.12  E-value=1.3e-06  Score=62.75  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~   75 (107)
                      .|++ |||+|.+|+++|++|++. + .+|+|||++..
T Consensus         2 ~dVi-IIGaGi~G~s~A~~La~~-G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIV-IIGAGIVGTNLADELVTR-GWNNITVLDQGPL   36 (305)
T ss_dssp             CCEE-EECCSHHHHHHHHHHHHT-TCCCEEEECSSCT
T ss_pred             CCEE-EECcCHHHHHHHHHHHHc-CCCcEEEEeCCCC
Confidence            4899 999999999999999985 5 47999999753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=2.3e-06  Score=59.36  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~~   76 (107)
                      +|++ |||||++|+++|..|++. +. +|.|+|+.+..
T Consensus         2 ~~V~-IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDIL-IAGAGIGGLSCALALHQA-GIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHT-TCSEEEEEESSSSC
T ss_pred             CEEE-EECcCHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Confidence            6899 999999999999999984 64 99999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.05  E-value=2e-06  Score=61.23  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +++++ |||+|++|+++|..|++ .+.+|+|||+.+
T Consensus         2 k~~V~-IvGaGp~Gl~~A~~L~~-~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVA-IIGAGPSGLLLGQLLHK-AGIDNVILERQT   35 (292)
T ss_dssp             BCSEE-EECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            46899 99999999999999998 489999999975

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.04  E-value=2.4e-06  Score=59.81  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=32.0

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..||++ |||+|+||+.+|.++++....+|+|+|....
T Consensus         2 k~YDvv-VIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLV-VIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEE-EECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEE-EECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            579999 9999999999999998854567999998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.03  E-value=2.8e-06  Score=63.03  Aligned_cols=38  Identities=29%  Similarity=0.263  Sum_probs=33.9

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +...+|++ |||+|.+|+++|.+|.+ .+.+|+|+|+++.
T Consensus         4 p~~~~dV~-IIGAG~sGl~~a~~L~~-~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           4 PPEEVDVL-VVGAGFSGLYALYRLRE-LGRSVHVIETAGD   41 (298)
T ss_dssp             CCSEEEEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCCEE-EECccHHHHHHHHHHHh-CCCCEEEEEcCCC
Confidence            44679999 99999999999999988 5899999999764

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.97  E-value=5.2e-06  Score=57.66  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -.++ |||+|++|+++|..|++ .+++|.|+|+.+.
T Consensus         5 ~kV~-IiGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIA-VVGGSISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CcEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4678 99999999999999998 5899999998654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.96  E-value=3.3e-06  Score=62.67  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||.+|+++|.+|++ .+.+|+|+|+.+.-
T Consensus         4 KI~-IIGaG~sGL~aA~~L~k-~G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KIL-IVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHI   37 (314)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             EEE-EECCcHHHHHHHHHHHh-CCCCEEEEECCCCC
Confidence            577 99999999999999998 48999999997643

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=5.2e-06  Score=61.08  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         5 ~~DVl-VIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLA-IVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             ECSEE-EECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             ecCEE-EECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            58999 999999999999999884 5789999999753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.85  E-value=1.1e-05  Score=57.45  Aligned_cols=39  Identities=23%  Similarity=0.133  Sum_probs=33.8

Q ss_pred             CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .....||+| |||+|++|+.+|..+++ .+.+|++||..+.
T Consensus        38 ~~~k~yDvv-VIGgG~aG~~aA~~~a~-~G~kv~vve~~~~   76 (261)
T d1mo9a1          38 NDPREYDAI-FIGGGAAGRFGSAYLRA-MGGRQLIVDRWPF   76 (261)
T ss_dssp             TCCSCBSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCccCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccCc
Confidence            345679999 99999999999999998 5889999998654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=9.7e-06  Score=59.18  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      ..+|++ |||+|++|+.+|..|+++ ++.+|+|+|+....
T Consensus        49 ~~~~~~-~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVI-IVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEE-EECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEE-EECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            358999 999999999999999973 68999999998654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.2e-06  Score=56.04  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ...|++ |||||++|+.+|..+++ .+.+|+|||+...
T Consensus         4 k~~dVv-IIGGGpaGl~AA~~~ar-~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLL-ILGSGPAGYTAAVYAAR-ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHT-TTCCCEEECCSST
T ss_pred             CCCcEE-EECCCHHHHHHHHHHHH-cCCceEEEEeecc
Confidence            457999 99999999999999998 5899999997653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=1.1e-05  Score=58.94  Aligned_cols=33  Identities=27%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .||+| |||+|.||+.+|..+++ .+.+++||+..
T Consensus         2 ~YDVI-VIGgG~AG~eAA~~aAR-~G~ktllit~~   34 (230)
T d2cula1           2 AYQVL-IVGAGFSGAETAFWLAQ-KGVRVGLLTQS   34 (230)
T ss_dssp             CCSEE-EECCSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCcEE-EECcCHHHHHHHHHHHH-CCCcEEEEEec
Confidence            59999 99999999999999988 59999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.74  E-value=8.3e-06  Score=55.80  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ..+|++ |||||++|+.+|..|++ .+.+|+|+|....
T Consensus         4 ~~~~Vv-IIGgGpaGl~aA~~~ar-~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLC-IVGSGPAAHTAAIYAAR-AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEE-EECCSHHHHHHHHHHHH-TTCCCEEECCSSB
T ss_pred             ccceEE-EECCCHHHHHHHHHHHH-cCCcEEEEEeecc
Confidence            458999 99999999999999997 5899999997653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=4.6e-05  Score=53.40  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=32.9

Q ss_pred             CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...-+++ |||+|+||+.+|..|++ .+.+|.|+|+....
T Consensus        47 ~~~k~Vv-IIGaGpAGl~aA~~l~~-~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVL-IVGAGPSGSEAARVLME-SGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cCCceEE-EEcccHHHHHHHHHHHH-hccceeeEeecccc
Confidence            3456888 99999999999999998 58999999998654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.58  E-value=3.9e-05  Score=51.19  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~~   76 (107)
                      .++ |||||++|+.+|..|++. +. .|.|+|+++..
T Consensus         6 kVa-IIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~   40 (196)
T d1gtea4           6 KIA-LLGAGPASISCASFLARL-GYSDITIFEKQEYV   40 (196)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHT-TCCCEEEEESSSSC
T ss_pred             EEE-EECChHHHHHHHHHHHHC-CCCeEEEEEecCcc
Confidence            567 999999999999999984 66 59999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=4.7e-05  Score=53.07  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ...++ |||+|+||+.+|..|++ .+++|.|+|+.+..
T Consensus        43 ~k~V~-IIGaGPAGL~AA~~la~-~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          43 KKNLA-VVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI   78 (179)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CcEEE-EECccHHHHHHHHHHHh-hccceEEEeccCcc
Confidence            46788 99999999999999998 58999999997644

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.53  E-value=5.3e-05  Score=52.34  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .++ |||+|+||+.+|..|.+. .+.+|.|+|+.+..
T Consensus         3 kv~-iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QIC-VVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEE-EECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            577 999999999999999864 47899999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=6.5e-05  Score=51.32  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             cceEEEeCccHHHHHHHHHHHHh------cCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEV------AHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~------~~~~VlvIEag~~~   76 (107)
                      +.+. |||+|+||+++|..|.+.      .+.+|.|+|+.+..
T Consensus         3 ~~Va-VIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIA-IVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEE-EECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            5788 999999999999999884      23689999998654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.32  E-value=0.00011  Score=53.47  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~   75 (107)
                      .++ |||||.+|+++|..|.+.. ..+|.|+|++..
T Consensus         6 rVa-IIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           6 KIA-IIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             EEE-EECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             eEE-EECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            477 9999999999999998642 469999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.31  E-value=0.00016  Score=46.71  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .++ |||||.+|+.+|.+|.+. ++.+|.+||+.+.
T Consensus         4 riv-IvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVV-VVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEE-EECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            467 999999999999999884 4579999998764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=0.00015  Score=50.58  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      +++ |||+|+||+.+|.++++.  .+.+|++||++...
T Consensus         3 ~vi-VIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~G   39 (233)
T d1xdia1           3 RIV-ILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG   39 (233)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT
T ss_pred             EEE-EECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCC
Confidence            677 999999999999887763  35789999987543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00038  Score=48.30  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=30.8

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD   75 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~   75 (107)
                      .+++|+ |||+|.+|+.+|..|.+. +..+|++|++...
T Consensus         3 ~~~~~v-IvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           3 SHVPFL-LIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             SEEEEE-EESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCEE-EECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            468999 999999999999999873 4568999987543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=4.8e-05  Score=51.74  Aligned_cols=30  Identities=27%  Similarity=0.202  Sum_probs=22.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .++ |||+|.+|+++|.+|++. +.+|+++|+
T Consensus         2 kV~-VIGaGi~GlstA~~L~~~-G~~v~v~e~   31 (246)
T d1kifa1           2 RVV-VIGAGVIGLSTALCIHER-YHSVLQPLD   31 (246)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHH-HTTTSSSCE
T ss_pred             EEE-EECchHHHHHHHHHHHHC-CCCceEEee
Confidence            366 999999999999999985 444444433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.001  Score=42.07  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|.+ .+.+|.++|+++.-
T Consensus        24 ~v~-IiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~i   57 (117)
T d1ebda2          24 SLV-VIGGGYIGIELGTAYAN-FGTKVTILEGAGEI   57 (117)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEE-EECCCccceeeeeeecc-cccEEEEEEeccee
Confidence            577 99999999999999998 58999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.64  E-value=0.0013  Score=42.27  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=31.1

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -.++ |||+|..|+-+|..|++ .+.+|.+||.++..
T Consensus        31 ~~vv-IIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLL-IVGGGVIGLELAATART-AGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CeEE-EECcchhHHHHHHHhhc-ccceEEEEeecccc
Confidence            4678 99999999999999998 59999999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.59  E-value=0.0014  Score=41.90  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +++ |||||..|+-+|..|++ .+.+|.++|.++.-
T Consensus        34 ~vv-IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAI-IIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEE-EEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             cEE-EECCcHHHHHHHHHhhc-ccceEEEEeccccc
Confidence            578 99999999999999998 58999999998653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.52  E-value=0.0016  Score=41.04  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|++ .+.+|.++|.++.-
T Consensus        23 ~vv-IiGgG~~G~E~A~~l~~-~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLV-VVGGGYIGLELGIAYRK-LGAQVSVVEARERI   56 (115)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHHhh-cccceEEEeeeccc
Confidence            577 99999999999999998 48999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0022  Score=40.67  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|.+ .+.+|.|+|.++..
T Consensus        23 ~vv-IiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~~   56 (116)
T d1gesa2          23 RVA-VVGAGYIGVELGGVING-LGAKTHLFEMFDAP   56 (116)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEE-EECCChhhHHHHHHhhc-cccEEEEEeecchh
Confidence            467 99999999999999998 58999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.39  E-value=0.0032  Score=41.05  Aligned_cols=32  Identities=28%  Similarity=0.345  Sum_probs=24.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +++ |||+|.+|+-+|..|.+. +.+|.|++...
T Consensus         5 ~Vv-IIGgG~~G~e~A~~l~~~-g~~v~v~~~~~   36 (185)
T d1q1ra1           5 NVV-IVGTGLAGVEVAFGLRAS-GWEGNIRLVGD   36 (185)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHT-TCCSEEEEECS
T ss_pred             CEE-EECCcHHHHHHHHHHHHc-CCceEEEEecC
Confidence            577 999999999999999984 55555555444

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.39  E-value=0.0022  Score=43.04  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~   76 (107)
                      .++ |||||.+|+.+|..|.+. ++.+|.++|+++..
T Consensus         2 KVv-IIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVI-VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEE-EECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            356 999999999999999874 56789999987643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.36  E-value=0.0025  Score=40.81  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.+||+.+..
T Consensus        32 ~vv-ViGgG~iG~E~A~~l~~-~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          32 NVV-VIGSGYIGIEAAEAFAK-AGKKVTVIDILDRP   65 (123)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             EEE-EECChHHHHHHHHHhhc-cceEEEEEEecCcc
Confidence            577 99999999999999998 58999999998644

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.36  E-value=0.0025  Score=41.42  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      -.++ |||+|..|+-+|..|.+ .+.+|.+||.++..
T Consensus        36 k~v~-VIGgG~iG~E~A~~l~~-~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLV-VIGGGYIGLEVAATAIK-ANMHVTLLDTAARV   70 (133)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CEEE-EECCchHHHHHHHHHHh-hCcceeeeeecccc
Confidence            4677 99999999999999998 58999999998754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.18  E-value=0.0034  Score=40.00  Aligned_cols=34  Identities=9%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|++ .+.+|.|+|.++.-
T Consensus        24 ~v~-IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIG-IVGSGYIAVELINVIKR-LGIDSYIFARGNRI   57 (117)
T ss_dssp             EEE-EECCSHHHHHHHHHHHT-TTCEEEEECSSSSS
T ss_pred             EEE-EECCchHHHHHHHHHHh-ccccceeeehhccc
Confidence            467 99999999999999997 58999999998654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0034  Score=40.60  Aligned_cols=31  Identities=26%  Similarity=0.493  Sum_probs=26.9

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++ |||+|.+|+-+|..|++  +.+|.|+|+.+.
T Consensus         3 Vv-IIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~   33 (167)
T d1xhca1           3 VV-IVGNGPGGFELAKQLSQ--TYEVTVIDKEPV   33 (167)
T ss_dssp             EE-EECCSHHHHHHHHHHTT--TSEEEEECSSSS
T ss_pred             EE-EECCcHHHHHHHHHHHc--CCCEEEEecccc
Confidence            56 99999999999999975  679999998754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.97  E-value=0.0037  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .|+ |+|.|..|..+|.+|.+ .+..|++||..+
T Consensus         2 ~~i-IiG~G~~G~~la~~L~~-~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFA-VIGLGRFGGSIVKELHR-MGHEVLAVDINE   33 (134)
T ss_dssp             CEE-EECCSHHHHHHHHHHHH-TTCCCEEEESCH
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEecCcH
Confidence            478 99999999999999998 589999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.91  E-value=0.0061  Score=38.68  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=30.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ -+.+|.++|..+.-
T Consensus        24 ~i~-IiG~G~ig~E~A~~l~~-~G~~Vtiv~~~~~l   57 (119)
T d3lada2          24 KLG-VIGAGVIGLELGSVWAR-LGAEVTVLEAMDKF   57 (119)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEE-EECCChHHHHHHHHHHH-cCCceEEEEeeccc
Confidence            467 99999999999999998 59999999998654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0067  Score=38.71  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.|||.++...
T Consensus        25 ~~v-IiG~G~ig~E~A~~l~~-lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          25 RLT-IIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQIG   59 (122)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSSS
T ss_pred             eEE-EECCCchHHHHHHHHHh-hCcceeEEEeccccc
Confidence            567 99999999999999998 599999999987543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0066  Score=38.75  Aligned_cols=34  Identities=18%  Similarity=0.052  Sum_probs=30.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++.-
T Consensus        24 ~vv-IvGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSV-IVGAGYIAVEMAGILSA-LGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEE-EEcCCccHHHHHHHHhc-CCcEEEEEeecccc
Confidence            567 99999999999999998 58999999998754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0056  Score=48.51  Aligned_cols=40  Identities=20%  Similarity=0.166  Sum_probs=35.5

Q ss_pred             CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      ....||+| |+|-|..=+.+|..|+. .|.+||.||+..+..
T Consensus         3 lP~e~DVI-I~GTGL~ESILAaAlSr-~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           3 LPSDFDVI-VIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCSBCSEE-EECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCccCEE-EECCChHHHHHHHHHHh-cCCEEEEecCCCcCC
Confidence            34679999 99999999999999998 589999999987664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.59  E-value=0.01  Score=37.02  Aligned_cols=34  Identities=9%  Similarity=0.097  Sum_probs=30.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus        24 ~vv-VvGgG~ig~E~A~~l~~-~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          24 TVV-VVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL   57 (121)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             EEE-EECCCHHHHHHHHHHHh-cchhheEeeccchh
Confidence            567 99999999999999997 58999999998643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.53  E-value=0.0056  Score=39.45  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=27.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..+|.+|.+. +.+|.|++...
T Consensus         4 ~Il-iiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVL-MLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEE-EECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEE-EECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            356 999999999999999984 78999999754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.39  E-value=0.011  Score=37.70  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.2

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      ++ |+|+|..|..+|.+|.+ .+..|.+||..+.
T Consensus         3 Iv-I~G~G~~G~~la~~L~~-~g~~v~vid~d~~   34 (132)
T d1lssa_           3 II-IAGIGRVGYTLAKSLSE-KGHDIVLIDIDKD   34 (132)
T ss_dssp             EE-EECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EE-EECCCHHHHHHHHHHHH-CCCCcceecCChh
Confidence            45 99999999999999998 4899999998653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.31  E-value=0.012  Score=38.43  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .+. |||+|..|+.+|..|++ .+..|.+++..+
T Consensus         3 ~ia-IiGaG~~G~~~A~~l~~-~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYA-VLGLGNGGHAFAAYLAL-KGQSVLAWDIDA   34 (184)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEE-EECccHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            356 99999999999999998 489999999853

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.27  E-value=0.0067  Score=39.96  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=23.0

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEA   72 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEa   72 (107)
                      .++ |||+|.+|+-+|..|.+. ...++++++.
T Consensus         5 ~Vv-IIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVV-VLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEE-EECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEE-EECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            477 999999999999999884 2334444443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.25  E-value=0.013  Score=37.74  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=30.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |||+|..|+=+|..+++ .+.+|.++|.++.-
T Consensus        28 ~vv-IiGgG~IG~E~A~~~~~-~G~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLL-IIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL   61 (125)
T ss_dssp             EEE-EESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEE-EECCCHHHHHHHHHhhc-CCCEEEEEEeeccc
Confidence            466 99999999999999998 48999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.23  E-value=0.012  Score=37.43  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN   77 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~   77 (107)
                      .++ |||+|..|+-+|..+++ .+.+|.|+|.++...
T Consensus        27 ~~v-iiG~G~iglE~A~~~~~-~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLV-VIGAGYIGLEMGSVWGR-IGSEVTVVEFASEIV   61 (123)
T ss_dssp             EEE-ESCCSHHHHHHHHHHHH-HTCEEEEECSSSSSS
T ss_pred             eEE-EEccchHHHHHHHHHHh-cCCeEEEEEEccccC
Confidence            466 99999999999999998 489999999987653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.016  Score=37.17  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .+. |+|+|.-|+.+|.+|++ .+..|.++.+....
T Consensus         2 kI~-IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KIT-VLGCGALGQLWLTALCK-QGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEECSSCCS
T ss_pred             EEE-EECcCHHHHHHHHHHHH-CCCceEEEEcCHHH
Confidence            356 99999999999999998 58999999887643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.99  E-value=0.017  Score=36.74  Aligned_cols=31  Identities=13%  Similarity=0.067  Sum_probs=27.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      .++ |||+|..|+-+|..|++ -+.+|.||+..
T Consensus        22 ~vv-IIGgG~iG~E~A~~l~~-lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTL-VVGASYVALECAGFLAG-IGLDVTVMVRS   52 (122)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEE-EECCCccHHHHHHHHhh-cCCeEEEEEec
Confidence            467 99999999999999998 48899999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.89  E-value=0.02  Score=35.86  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..+.+-  .+..|.+||.++.-
T Consensus        22 ~v~-ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVL-TVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEE-EECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            577 999999999999877653  25689999998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.019  Score=36.97  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             ceEEEeCccHHHHHHHHHHHH---hcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSE---VAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~---~~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|++   ..+.+|.+||.++..
T Consensus        39 ~i~-IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          39 SIT-IIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             EEE-EECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            577 99999999999998864   247899999998654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.60  E-value=0.026  Score=35.08  Aligned_cols=35  Identities=20%  Similarity=0.073  Sum_probs=28.6

Q ss_pred             ceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~   76 (107)
                      .++ |||||..|+-+|..|++.  .+.+|.++|.++.-
T Consensus        20 ~v~-IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          20 RAL-CVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             eEE-EECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            577 999999999999877652  36799999998654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.027  Score=33.94  Aligned_cols=34  Identities=9%  Similarity=0.075  Sum_probs=29.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      .++ |+|.|..|.++|..|.+ .+.+|.+.|.....
T Consensus         7 ~v~-ViGlG~sG~s~a~~L~~-~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVV-IIGLGLTGLSCVDFFLA-RGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEE-EECCSHHHHHHHHHHHH-TTCCCEEEESSSSC
T ss_pred             EEE-EEeECHHHHHHHHHHHH-CCCEEEEeeCCcCc
Confidence            467 99999999999999998 48999999987654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.68  E-value=0.074  Score=35.16  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=32.0

Q ss_pred             cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++...+..+. |||+|..|..+|..|...+-..++++|..+
T Consensus         2 ~~~~k~~KI~-IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           2 ALVQRRKKVA-MIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCSCCCEEE-EECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccccCCCcEE-EECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4555667888 999999999999998886545789998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.76  E-value=0.054  Score=36.86  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      -.+. |+|+|..|.++|..|+++ +.+|.+....
T Consensus         8 ~KI~-ViGaG~wGtAlA~~La~~-g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAV-VFGSGAFGTALAMVLSKK-CREVCVWHMN   39 (189)
T ss_dssp             EEEE-EECCSHHHHHHHHHHHTT-EEEEEEECSC
T ss_pred             ceEE-EECCCHHHHHHHHHHHHc-CCeEEEEEec
Confidence            4577 999999999999999984 6789888753

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.096  Score=35.57  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +. |||+|.-|..+|..++. .++.|.++|..+.
T Consensus         7 va-ViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~   38 (192)
T d1f0ya2           7 VT-VIGGGLMGAGIAQVAAA-TGHTVVLVDQTED   38 (192)
T ss_dssp             EE-EECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EE-EECcCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            45 99999999999999987 5999999988653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.95  E-value=0.11  Score=34.66  Aligned_cols=29  Identities=21%  Similarity=0.317  Sum_probs=25.2

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      +. |||+|..|.++|..|+++ +.+|.+...
T Consensus         3 I~-ViGaG~~GtalA~~la~~-g~~V~l~~r   31 (180)
T d1txga2           3 VS-ILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (180)
T ss_dssp             EE-EESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EE-EECCCHHHHHHHHHHHHC-CCEEEEEEe
Confidence            45 999999999999999984 789998854

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.13  Score=32.86  Aligned_cols=31  Identities=16%  Similarity=0.144  Sum_probs=27.5

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +| |+|.|..|..++..|.+ .+..|.+||..+
T Consensus         6 iI-I~G~g~~g~~l~~~L~~-~~~~v~vId~d~   36 (153)
T d1id1a_           6 FI-VCGHSILAINTILQLNQ-RGQNVTVISNLP   36 (153)
T ss_dssp             EE-EECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             EE-EECCCHHHHHHHHHHHH-cCCCEEEEeccc
Confidence            67 99999999999999998 488999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.56  E-value=0.098  Score=35.21  Aligned_cols=31  Identities=19%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||+|..|..+|..++. .+++|.++|..+
T Consensus         7 va-ViGaG~mG~~iA~~~a~-~G~~V~l~D~~~   37 (186)
T d1wdka3           7 AA-VLGAGIMGGGIAYQSAS-KGTPILMKDINE   37 (186)
T ss_dssp             EE-EECCHHHHHHHHHHHHH-TTCCEEEECSSH
T ss_pred             EE-EECcCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            45 99999999999999887 589999998864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.41  E-value=0.16  Score=33.35  Aligned_cols=34  Identities=18%  Similarity=0.086  Sum_probs=27.8

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .++ |||||..|+-+|..+.+....+|.+++..+.
T Consensus        47 kVv-VIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVI-VLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEE-EECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEE-EECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            577 9999999999998887754567889987653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.59  E-value=0.19  Score=32.41  Aligned_cols=29  Identities=21%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             EeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      |||.|.-|..+|.+|.+ .+.+|.+.+...
T Consensus         5 iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~   33 (165)
T d2f1ka2           5 VVGLGLIGASLAGDLRR-RGHYLIGVSRQQ   33 (165)
T ss_dssp             EECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEeecHHHHHHHHHHHH-CCCEEEEEECCc
Confidence            99999999999999988 589999987753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.31  E-value=0.066  Score=34.20  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=27.6

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~   75 (107)
                      ++.++ |+|+|.+|..++..+....+++ |..+|..+.
T Consensus         3 ~~~v~-I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLC-IVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEE-EECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEE-EEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            46788 9999999999998876555655 577776554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.98  E-value=0.19  Score=32.05  Aligned_cols=29  Identities=14%  Similarity=0.035  Sum_probs=26.0

Q ss_pred             CccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        47 G~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      |+|..|+-+|..|++ .+.+|.+||..+..
T Consensus        48 ggg~ig~e~A~~la~-~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          48 DTYFMAPSLAEKLAT-AGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCSSHHHHHHHHHHH-TTCEEEEEESSCTT
T ss_pred             CCChHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            999999999999998 58999999997643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.79  E-value=0.23  Score=31.02  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             eEEEe-CccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSL-GGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~Iv-G~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. || |+|.-|..+|.+|++ .+.+|.+..+.+
T Consensus         3 i~-vigGaG~iG~alA~~la~-~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VA-LLGGTGNLGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EE-EETTTSHHHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EE-EEeCCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            45 77 679999999999998 589999997653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.77  E-value=0.3  Score=29.90  Aligned_cols=32  Identities=25%  Similarity=0.155  Sum_probs=27.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |||+|..|...|..|.+ .+.+|.++....
T Consensus        14 ~vl-VvG~G~va~~ka~~ll~-~ga~v~v~~~~~   45 (113)
T d1pjqa1          14 DCL-IVGGGDVAERKARLLLE-AGARLTVNALTF   45 (113)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTBEEEEEESSC
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccC
Confidence            577 99999999999999998 488998886543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.43  E-value=0.19  Score=30.67  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEE
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLL   69 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~Vlv   69 (107)
                      -+++ |||+|..|.-+|..|++.....+++
T Consensus        33 K~Vl-VVG~g~Sa~dia~~l~~~ak~v~~~   61 (107)
T d2gv8a2          33 ESVL-VVGGASSANDLVRHLTPVAKHPIYQ   61 (107)
T ss_dssp             CCEE-EECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred             CeEE-EECCCCCHHHHHHHHHHhcCEEEEE
Confidence            4788 9999999999999999854433433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.08  E-value=0.18  Score=33.90  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||.|..|+.+|..|++ .+.+|..+|...
T Consensus         3 I~-ViGlG~vGl~~a~~la~-~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 IS-IFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (202)
T ss_dssp             EE-EECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EE-EECCCHhHHHHHHHHHh-CCCcEEEEeCCH
Confidence            45 89999999999999998 589999999743

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.75  E-value=0.22  Score=31.89  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA   72 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa   72 (107)
                      .++ |||||..|..-|..|.+ .+.+|.||..
T Consensus        15 rvL-ViGgG~va~~ka~~Ll~-~GA~VtVvap   44 (150)
T d1kyqa1          15 RIL-LIGGGEVGLTRLYKLMP-TGCKLTLVSP   44 (150)
T ss_dssp             EEE-EEEESHHHHHHHHHHGG-GTCEEEEEEE
T ss_pred             EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeC
Confidence            567 99999999999999998 4899999944

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=88.05  E-value=0.35  Score=30.65  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             ceEEEeC-ccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          41 DFPVSLG-GGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG-~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .+. ||| .|.-|..+|.+|.+ .++.|.+.+....
T Consensus        11 kI~-iIGg~G~mG~~la~~L~~-~G~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIV-IVGGYGKLGGLFARYLRA-SGYPISILDREDW   44 (152)
T ss_dssp             CEE-EETTTSHHHHHHHHHHHT-TTCCEEEECTTCG
T ss_pred             eEE-EEcCCCHHHHHHHHHHHH-cCCCcEecccccc
Confidence            455 999 69999999999998 5899999988653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.46  E-value=0.61  Score=29.94  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      +. |||+|.-|..+|..|...+-..++++|..+.
T Consensus         4 I~-IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           4 IS-IIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EE-EECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             EE-EECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            45 8999999999999998865558999987543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.39  E-value=1.1  Score=27.80  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..+. |+|||.-|.++|....+ -+.+|.+++..++.
T Consensus        12 ~kig-IlGgGQL~rMla~aA~~-lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVM-LLGSGELGKEVAIECQR-LGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEE-EESCSHHHHHHHHHHHT-TTCEEEEEESSTTC
T ss_pred             CEEE-EEeCCHHHHHHHHHHHH-CCCEEEEEcCCCCC
Confidence            3566 99999999999998776 59999999988764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=0.57  Score=32.05  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      ..++ |||.|.-|+.+|..|+..+--++.++|....+
T Consensus        31 ~~Vl-iiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          31 SRVL-IVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             CCEE-EECCCHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence            4678 99999999999999999655688999877655

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.23  E-value=0.7  Score=31.68  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=29.0

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      .-.++ |+|+|.+|+.++.-... -+..|.++|....
T Consensus        29 pa~Vv-ViGaGvaG~~Aa~~A~~-lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVL-VFGVGVAGLQAIATAKR-LGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHH-TTCEEEEECSCST
T ss_pred             CcEEE-EEcCcHHHHHHHHHHHH-cCCEEEEEeccHH
Confidence            35788 99999999998887665 5899999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.80  E-value=0.69  Score=31.29  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=28.9

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...++ |+|+|.+|+.++.-... -+..|.++|...
T Consensus        32 pa~V~-ViGaGvaG~~A~~~A~~-lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVV-ILGGGVVGTEAAKMAVG-LGAQVQIFDINV   65 (168)
T ss_dssp             CCEEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CcEEE-EECCChHHHHHHHHHhh-CCCEEEEEeCcH
Confidence            46788 99999999999888776 589999999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=84.71  E-value=0.64  Score=30.31  Aligned_cols=32  Identities=13%  Similarity=0.189  Sum_probs=27.4

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++- +||-|.-|..+|.+|.+ .+++|.+.+..+
T Consensus         4 nIg-~IGlG~MG~~mA~~L~~-~G~~V~v~dr~~   35 (176)
T d2pgda2           4 DIA-LIGLAVMGQNLILNMND-HGFVVCAFNRTV   35 (176)
T ss_dssp             SEE-EECCSHHHHHHHHHHHH-TTCCEEEECSST
T ss_pred             cEE-EEeEhHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence            444 99999999999999998 589999997653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.67  E-value=0.74  Score=29.31  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             eEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~   74 (107)
                      +. |||.|.-|.++|..|.+.. ..+|..+|...
T Consensus         4 I~-IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           4 VL-IVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EE-EESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EE-EEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            55 9999999999999998842 35788887643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=84.37  E-value=0.86  Score=29.46  Aligned_cols=35  Identities=11%  Similarity=0.188  Sum_probs=28.1

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~   74 (107)
                      +..+. |||+|..|..+|..|...+- ..+.++|..+
T Consensus         5 ~~KI~-IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVV-LVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEE-EECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEE-EECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            34677 99999999999999998542 4799998643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.13  E-value=0.73  Score=29.21  Aligned_cols=30  Identities=27%  Similarity=0.232  Sum_probs=25.7

Q ss_pred             EEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +|||.|..|..+|.+|.+ .+..|.+.....
T Consensus         4 giIG~G~mG~~ia~~l~~-~g~~v~~~~~~~   33 (152)
T d1i36a2           4 GFIGFGEVAQTLASRLRS-RGVEVVTSLEGR   33 (152)
T ss_dssp             EEESCSHHHHHHHHHHHH-TTCEEEECCTTC
T ss_pred             EEEcHHHHHHHHHHHHHH-CCCeEEEEcCch
Confidence            389999999999999998 478888887554

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=0.77  Score=29.83  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=26.5

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      -.++ |+|+|-++.+++..|.+. +.+|.|+.+.
T Consensus        19 k~vl-IlGaGGaarai~~al~~~-g~~i~I~nRt   50 (170)
T d1nyta1          19 LRIL-LIGAGGASRGVLLPLLSL-DCAVTITNRT   50 (170)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CEEE-EECCcHHHHHHHHHhccc-ceEEEeccch
Confidence            3678 999999999999999984 6688888653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.74  E-value=0.88  Score=28.85  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. +||+|.-|..+|..|.+....+|.+.++..
T Consensus         3 I~-fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           3 VY-FLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EE-EECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EE-EEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            44 899999999999999886568999987764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=0.97  Score=28.97  Aligned_cols=33  Identities=15%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|+.++.-+......+|.++|..+
T Consensus        29 ~Vl-I~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVL-VCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEE-EECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            356 999999999998887765344799988654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.43  E-value=0.82  Score=29.54  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             EEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      +|||-|..|..+|.+|.+ .+++|.+.+..
T Consensus         5 GvIGlG~MG~~ma~~L~~-~G~~V~~~dr~   33 (178)
T d1pgja2           5 GVVGLGVMGANLALNIAE-KGFKVAVFNRT   33 (178)
T ss_dssp             EEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             EEEeehHHHHHHHHHHHH-CCCeEEEEECC
Confidence            389999999999999998 58999998753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.05  E-value=0.68  Score=29.82  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=25.7

Q ss_pred             EEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105          44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAG   73 (107)
Q Consensus        44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag   73 (107)
                      ++||-|.-|..+|.+|.+ .++.|.+.+..
T Consensus         5 g~IGlG~MG~~iA~~L~~-~g~~v~~~d~~   33 (162)
T d3cuma2           5 AFIGLGHMGAPMATNLLK-AGYLLNVFDLV   33 (162)
T ss_dssp             EEECCSTTHHHHHHHHHH-TTCEEEEECSS
T ss_pred             EEEEEHHHHHHHHHHHHH-CCCeEEEEECc
Confidence            389999999999999998 58999998765

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.89  E-value=0.78  Score=30.13  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      +. |||.|-.|+.+|..+++  +.+|..+|-..
T Consensus         3 I~-ViGlG~vGl~~a~~~a~--g~~V~g~Din~   32 (196)
T d1dlja2           3 IA-VAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (196)
T ss_dssp             EE-EECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EE-EECCChhHHHHHHHHHC--CCcEEEEECCH
Confidence            45 89999999999988863  78999998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=81.76  E-value=1.1  Score=28.38  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      .++ |+|+|..|..++..+.. .+.+|.++|..+
T Consensus        29 ~vl-V~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVL-VIGAGPIGLVSVLAAKA-YGAFVVCTARSP   60 (170)
T ss_dssp             EEE-EECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             EEE-EEcccccchhhHhhHhh-hcccccccchHH
Confidence            355 89999999998877665 578999998754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.26  E-value=1.1  Score=27.94  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=29.2

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD   75 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~   75 (107)
                      -+++ |||+|.+++-.|..|++. ..+|.+|-.++.
T Consensus        31 k~V~-VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~   64 (126)
T d1fl2a2          31 KRVA-VIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE   64 (126)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHTT-BSEEEEECSSSS
T ss_pred             ceEE-EEeCCHHHHHHHHhhhcc-CCceEEEecccc
Confidence            4788 999999999999999984 678999988754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.02  E-value=1.1  Score=26.44  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             EEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105          44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE   76 (107)
Q Consensus        44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~   76 (107)
                      +|+|+|.-|.+++..... -+.+|.+++...+.
T Consensus         5 gIlG~GQLgrMl~~Aa~~-LG~~v~vldp~~~~   36 (78)
T d3etja2           5 CVLGNGQLGRMLRQAGEP-LGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEBCSHHHHHHHHHHGG-GTEEEEEECTTSCG
T ss_pred             EEEcCCHHHHHHHHHHHH-cCCEEEEEcCCCCC
Confidence            499999999999998776 59999999986543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=80.59  E-value=1.7  Score=28.59  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             CccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105          38 NWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP   74 (107)
Q Consensus        38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~   74 (107)
                      ....+. |||+|..|..+|+.|...+- -.++++|...
T Consensus        19 ~~~KV~-IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKIT-VVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEE-EECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEE-EECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            345788 99999999999999998543 3688888653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.40  E-value=1.2  Score=28.66  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=25.3

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAG   73 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag   73 (107)
                      .+. |||+|..|..+|..|..++- ..+.++|..
T Consensus         2 KI~-IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLG-FVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEE-EECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEE-EECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            355 99999999999999987543 358888754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.38  E-value=0.84  Score=29.25  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             EEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ++||.|.-|..+|.+|.+ .+++|.+.+..+
T Consensus         4 giIGlG~MG~~~A~~L~~-~G~~V~~~d~~~   33 (161)
T d1vpda2           4 GFIGLGIMGKPMSKNLLK-AGYSLVVSDRNP   33 (161)
T ss_dssp             EEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEehhHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence            489999999999999998 589999987654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.18  E-value=1.2  Score=31.28  Aligned_cols=35  Identities=17%  Similarity=0.090  Sum_probs=29.5

Q ss_pred             ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105          39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP   74 (107)
Q Consensus        39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~   74 (107)
                      ...++ +.|+|+||+-+|..|.+....++.++|..+
T Consensus        26 d~riv-~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          26 EVKVV-VNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TCEEE-EECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hcEEE-EEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            35688 999999999999999876667898998864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=80.12  E-value=1.3  Score=28.30  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=25.9

Q ss_pred             ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105          41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD   75 (107)
Q Consensus        41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~   75 (107)
                      .+. |||+|..|..+|..|...+-. .+.++|....
T Consensus         3 KI~-IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVA-IIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEE-EECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEE-EECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            355 999999999999999885433 6999986554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.02  E-value=1.2  Score=28.68  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.9

Q ss_pred             cceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105          40 GDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP   74 (107)
Q Consensus        40 ~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~   74 (107)
                      ..+. |||+|..|..+|..|...+- ..+.++|..+
T Consensus         7 ~KI~-IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           7 ARVV-VIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             CEEE-EECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEE-EECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3567 99999999999999998543 3688888643