Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 93
TIGR01657 1054
TIGR01657, P-ATPase-V, P-type ATPase of unknown pu
4e-27 TIGR01494 543
TIGR01494, ATPase_P-type, ATPase, P-type (transpor
2e-13 COG0474 917
COG0474, MgtA, Cation transport ATPase [Inorganic
2e-12 COG2217 713
COG2217, ZntA, Cation transport ATPase [Inorganic
8e-04 TIGR01517 944
TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-
8e-04 TIGR01525 556
TIGR01525, ATPase-IB_hvy, heavy metal translocatin
0.004
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)
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Score = 102 bits (256), Expect = 4e-27
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKF 60
+++G + +RL+K I+C SP IN +G I+ CFDKTGTLTEDGLD+ GV + +
Sbjct: 418 LSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQE 477
Query: 61 LAPVKRPSSLPPTEPLLAAM 80
+ S A+
Sbjct: 478 FLKIVTEDSSLKPSITHKAL 497
These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC
Back Show alignment and domain information
Score = 63.5 bits (155), Expect = 2e-13
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54
+TV +RL K I + + G ++ +C DKTGTLT++ + + GV
Sbjct: 210 VTVALAVGDARLAKKGILVRNLNALEELGKVDYLCSDKTGTLTKNKMTLQGVYI 263
The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Score = 61.2 bits (149), Expect = 2e-12
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKF 60
+T+ R+ K+N S I GS++ +C DKTGTLT++ + + + K
Sbjct: 318 VTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKD 377
Query: 61 LAPVKRPSSLPPTEPLLAA 79
+ S LLAA
Sbjct: 378 IDDKDLKDSPALLRFLLAA 396
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Score = 36.4 bits (85), Expect = 8e-04
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 29 GSINCVCFDKTGTLTE 44
++ V FDKTGTLTE
Sbjct: 403 AKVDTVVFDKTGTLTE 418
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase
Back Show alignment and domain information
Score = 36.3 bits (84), Expect = 8e-04
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTED 45
T+ Y+ ++ K+N GS +C DKTGTLT++
Sbjct: 349 TIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQN 392
This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase
Back Show alignment and domain information
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 29 GSINCVCFDKTGTLTEDGLDMWGVVPVHD 57
+ V FDKTGTLT + + P+ D
Sbjct: 244 AKVKTVVFDKTGTLTTGKPTVVDIEPLDD 272
This model encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
93
COG2217 713
ZntA Cation transport ATPase [Inorganic ion transp
99.82 TIGR01511 562
ATPase-IB1_Cu copper-(or silver)-translocating P-t
99.8 TIGR01525 556
ATPase-IB_hvy heavy metal translocating P-type ATP
99.78 PRK11033 741
zntA zinc/cadmium/mercury/lead-transporting ATPase
99.77 TIGR01647 755
ATPase-IIIA_H plasma-membrane proton-efflux P-type
99.76 PRK01122 679
potassium-transporting ATPase subunit B; Provision
99.75 PRK10671 834
copA copper exporting ATPase; Provisional
99.74 TIGR01497 675
kdpB K+-transporting ATPase, B subunit. One sequen
99.74 TIGR01512 536
ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo
99.74 KOG0207|consensus 951
99.74 PRK14010 673
potassium-transporting ATPase subunit B; Provision
99.73 TIGR01494 499
ATPase_P-type ATPase, P-type (transporting), HAD s
99.71 PRK15122 903
magnesium-transporting ATPase; Provisional
99.71 TIGR01524 867
ATPase-IIIB_Mg magnesium-translocating P-type ATPa
99.7 PRK10517 902
magnesium-transporting ATPase MgtA; Provisional
99.67 TIGR01657 1054
P-ATPase-V P-type ATPase of unknown pump specifici
99.65 TIGR01522 884
ATPase-IIA2_Ca golgi membrane calcium-translocatin
99.65 TIGR01517 941
ATPase-IIB_Ca plasma-membrane calcium-translocatin
99.63 TIGR01523 1053
ATPase-IID_K-Na potassium and/or sodium efflux P-t
99.56 COG0474 917
MgtA Cation transport ATPase [Inorganic ion transp
99.56 TIGR01116 917
ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium
99.56 TIGR01106 997
ATPase-IIC_X-K sodium or proton efflux -- potassiu
99.53 KOG0208|consensus 1140
99.53 KOG0202|consensus 972
99.45 KOG0204|consensus 1034
99.33 KOG0205|consensus 942
99.29 KOG0209|consensus 1160
99.2 KOG0203|consensus 1019
99.02 TIGR01652 1057
ATPase-Plipid phospholipid-translocating P-type AT
99.02 COG2216 681
KdpB High-affinity K+ transport system, ATPase cha
98.92 PF00702 215
Hydrolase: haloacid dehalogenase-like hydrolase; I
98.74 PLN03190 1178
aminophospholipid translocase; Provisional
98.62 KOG0210|consensus 1051
97.89 KOG0206|consensus 1151
97.3 PF12710 192
HAD: haloacid dehalogenase-like hydrolase; PDB: 3P
88.98
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
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Probab=99.82 E-value=2.4e-20 Score=145.12 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC--hhhHHHHHHhhcCCCChHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH--DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
++++..|+++++|+|||+|++.++|.++++++++||||||||+|+|.|.++...+ +++.+ .+....|..++||+++|
T Consensus 376 P~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~~e~~~L-~laAalE~~S~HPiA~A 454 (713)
T COG2217 376 PTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDGDEDELL-ALAAALEQHSEHPLAKA 454 (713)
T ss_pred HHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCCCHHHHH-HHHHHHHhcCCChHHHH
Confidence 5788999999999999999999999999999999999999999999999999874 23332 22233333444558899
Q ss_pred HHHhhhhh
Q psy410 80 MEKRCKVH 87 (93)
Q Consensus 80 i~~~~~~~ 87 (93)
|+.+++..
T Consensus 455 Iv~~a~~~ 462 (713)
T COG2217 455 IVKAAAER 462 (713)
T ss_pred HHHHHHhc
Confidence 98876654
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.80 E-value=2.2e-19 Score=136.87 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++++++|+||++|++.++|.+++++++|||||||||+|+|+|.++.+.+ +++++... ...+..+.||+++
T Consensus 248 p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~l~~a-a~~e~~s~HPia~ 326 (562)
T TIGR01511 248 PTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVFGDRDRTELLALA-AALEAGSEHPLAK 326 (562)
T ss_pred HHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEecCCCCCHHHHHHHH-HHHhccCCChHHH
Confidence 5788999999999999999999999999999999999999999999999987653 23333322 2223334566888
Q ss_pred HHHHhhhh
Q psy410 79 AMEKRCKV 86 (93)
Q Consensus 79 ai~~~~~~ 86 (93)
|+..+++.
T Consensus 327 Ai~~~~~~ 334 (562)
T TIGR01511 327 AIVSYAKE 334 (562)
T ss_pred HHHHHHHh
Confidence 88887754
One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase
Back Show alignment and domain information
Probab=99.78 E-value=9.8e-19 Score=133.05 Aligned_cols=85 Identities=25% Similarity=0.308 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh-----hhHHHHHHhhcCCCChHH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD-----CKFLAPVKRPSSLPPTEP 75 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~~~~~~~~~s~~p~~~~ 75 (93)
+++++..++++++++|+++|+++++|.+++++++|||||||||+|+|+|.++...++ ++.+. +....+..+.||
T Consensus 216 ~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~-~a~~~e~~~~hp 294 (556)
T TIGR01525 216 TPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLA-LAAALEQSSSHP 294 (556)
T ss_pred hHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHH-HHHHHhccCCCh
Confidence 367889999999999999999999999999999999999999999999999876532 23332 223334456678
Q ss_pred HHHHHHHhhhh
Q psy410 76 LLAAMEKRCKV 86 (93)
Q Consensus 76 l~~ai~~~~~~ 86 (93)
++.||..+++.
T Consensus 295 ~~~Ai~~~~~~ 305 (556)
T TIGR01525 295 LARAIVRYAKK 305 (556)
T ss_pred HHHHHHHHHHh
Confidence 88999888764
This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=1.2e-18 Score=136.42 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++.+++|+||++|++.++|.+++++++|||||||||+|+|+|.+++..+ +++++. +....+..+.||+++
T Consensus 407 P~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~-~aa~~e~~s~hPia~ 485 (741)
T PRK11033 407 PAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLA-LAAAVEQGSTHPLAQ 485 (741)
T ss_pred HHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHHHH-HHHHHhcCCCCHHHH
Confidence 4677889999999999999999999999999999999999999999999998653 233333 233344556788999
Q ss_pred HHHHhhhhh
Q psy410 79 AMEKRCKVH 87 (93)
Q Consensus 79 ai~~~~~~~ 87 (93)
||..+++.+
T Consensus 486 Ai~~~a~~~ 494 (741)
T PRK11033 486 AIVREAQVR 494 (741)
T ss_pred HHHHHHHhc
Confidence 998887643
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase
Back Show alignment and domain information
Probab=99.76 E-value=3.1e-18 Score=134.25 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC----hhhHHHHHHhhcCCCChHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH----DCKFLAPVKRPSSLPPTEPLL 77 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~----~~~~~~~~~~~s~~p~~~~l~ 77 (93)
+++++.|+++++|+|+++|+++++|.+|.++++|||||||||+|+|+|.+++..+ .++.+......++..+.||+.
T Consensus 257 ~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~ 336 (755)
T TIGR01647 257 SVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAID 336 (755)
T ss_pred HHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHH
Confidence 6788899999999999999999999999999999999999999999999987653 223332222233455678888
Q ss_pred HHHHHhhh
Q psy410 78 AAMEKRCK 85 (93)
Q Consensus 78 ~ai~~~~~ 85 (93)
.|+..+++
T Consensus 337 ~Ai~~~~~ 344 (755)
T TIGR01647 337 TAVLGSAK 344 (755)
T ss_pred HHHHHHHH
Confidence 88887654
This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Back Show alignment and domain information
Probab=99.75 E-value=5.1e-18 Score=131.77 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHH
Q psy410 3 VGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 3 ia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
+....|+++++|+|+++|+++++|.+|+++++|||||||||+|++++.++++.. ++.++. ....++..+.||+++|
T Consensus 270 ~i~i~g~~r~ak~gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~-~a~~~s~~s~hP~~~A 348 (679)
T PRK01122 270 AIGIAGMDRVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELAD-AAQLSSLADETPEGRS 348 (679)
T ss_pred HHHHHHHHHHhcCCeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHH-HHHHhcCCCCCchHHH
Confidence 345679999999999999999999999999999999999999999999987653 222322 2222333344567778
Q ss_pred HHHhhhh
Q psy410 80 MEKRCKV 86 (93)
Q Consensus 80 i~~~~~~ 86 (93)
|..+++.
T Consensus 349 Iv~~a~~ 355 (679)
T PRK01122 349 IVVLAKQ 355 (679)
T ss_pred HHHHHHh
Confidence 8776654
>PRK10671 copA copper exporting ATPase; Provisional
Back Show alignment and domain information
Probab=99.74 E-value=5.8e-18 Score=133.71 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++++++|+||++|+++++|.+++++++|||||||||+|+|+|.++.... +.+.+.. ....+..+.||+++
T Consensus 488 p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~-a~~~e~~s~hp~a~ 566 (834)
T PRK10671 488 PMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRL-AAALEQGSSHPLAR 566 (834)
T ss_pred HHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEEEEccCCCCHHHHHHH-HHHHhCCCCCHHHH
Confidence 5788899999999999999999999999999999999999999999999887653 2333222 22223344566888
Q ss_pred HHHHhhh
Q psy410 79 AMEKRCK 85 (93)
Q Consensus 79 ai~~~~~ 85 (93)
||..+++
T Consensus 567 Ai~~~~~ 573 (834)
T PRK10671 567 AILDKAG 573 (834)
T ss_pred HHHHHHh
Confidence 8877654
>TIGR01497 kdpB K+-transporting ATPase, B subunit
Back Show alignment and domain information
Probab=99.74 E-value=6.3e-18 Score=131.19 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 5 RIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 5 ~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
...|++|++|+|+++|++.++|.+|+++++|||||||||+|+|++.++++.. .++++.. ....+..++||+++|+.
T Consensus 273 ~iag~~r~ar~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~-aa~~~~~s~hP~a~Aiv 351 (675)
T TIGR01497 273 GIAGMDRVLGFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADA-AQLASLADDTPEGKSIV 351 (675)
T ss_pred HHHHHHHHHHCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHH-HHHhcCCCCCcHHHHHH
Confidence 3568999999999999999999999999999999999999999999988653 2233322 22233344566777887
Q ss_pred Hhhhh
Q psy410 82 KRCKV 86 (93)
Q Consensus 82 ~~~~~ 86 (93)
.+++.
T Consensus 352 ~~a~~ 356 (675)
T TIGR01497 352 ILAKQ 356 (675)
T ss_pred HHHHH
Confidence 76653
One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.74 E-value=4.7e-18 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
++++..++++++|+||++|+++++|.+++++++|||||||||+|+|+|.++.+. +.+... ...+..+.||+++||.
T Consensus 217 ~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~---~~l~~a-~~~e~~~~hp~~~Ai~ 292 (536)
T TIGR01512 217 PAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA---EVLRLA-AAAEQASSHPLARAIV 292 (536)
T ss_pred HHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeHH---HHHHHH-HHHhccCCCcHHHHHH
Confidence 678889999999999999999999999999999999999999999999998653 222221 2233344566888888
Q ss_pred Hhhhhh
Q psy410 82 KRCKVH 87 (93)
Q Consensus 82 ~~~~~~ 87 (93)
.+++..
T Consensus 293 ~~~~~~ 298 (536)
T TIGR01512 293 DYARKR 298 (536)
T ss_pred HHHHhc
Confidence 776543
>KOG0207|consensus
Back Show alignment and domain information
Probab=99.74 E-value=1.1e-18 Score=136.82 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++|++.|.+..+++|+|+|+++.+|.+.++++++||||||||+|++.|.++....+ ......+....|..+.||+++
T Consensus 553 PtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~ 632 (951)
T KOG0207|consen 553 PTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGK 632 (951)
T ss_pred ceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHH
Confidence 35667788999999999999999999999999999999999999999999988754 222233445555566677999
Q ss_pred HHHHhhhhhc
Q psy410 79 AMEKRCKVHK 88 (93)
Q Consensus 79 ai~~~~~~~~ 88 (93)
||+.|++...
T Consensus 633 AIv~yak~~~ 642 (951)
T KOG0207|consen 633 AIVDYAKEKL 642 (951)
T ss_pred HHHHHHHhcc
Confidence 9999998765
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Back Show alignment and domain information
Probab=99.73 E-value=1.3e-17 Score=129.52 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ 78 (93)
+++...|++|++|+|+++|++.++|.+|+++++|||||||||+|++.+.++.+..+ ++++. ....++..+.||+++
T Consensus 269 ~~~~~~g~~r~ak~gvLvk~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~-~a~~~~~~s~~P~~~ 347 (673)
T PRK14010 269 SAIGIAGMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVK-AAYESSIADDTPEGR 347 (673)
T ss_pred HHHHHHHHHHHhhCCEEEeCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHH-HHHHhcCCCCChHHH
Confidence 45667899999999999999999999999999999999999999998888766532 22222 222333445678888
Q ss_pred HHHHhhhh
Q psy410 79 AMEKRCKV 86 (93)
Q Consensus 79 ai~~~~~~ 86 (93)
||..+++.
T Consensus 348 AIv~~a~~ 355 (673)
T PRK14010 348 SIVKLAYK 355 (673)
T ss_pred HHHHHHHH
Confidence 88877653
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC
Back Show alignment and domain information
Probab=99.71 E-value=2.8e-17 Score=123.56 Aligned_cols=73 Identities=27% Similarity=0.364 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
++++..+..+++++|+++|+++.+|.+++++++|||||||||+|+|++.++...+. +..+.||+..|+.
T Consensus 201 ~~~~~~~~~~~~~~gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----------~~~s~hp~~~ai~ 269 (499)
T TIGR01494 201 TIALAVGDARLAKKGIVVRSLNALEELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-----------EYLSGHPDERALV 269 (499)
T ss_pred HHHHHHHHHHHHHCCcEEechhhhhhccCCcEEEeeCCCccccCceEEEEEEecCC-----------CcCCCChHHHHHH
Confidence 56888999999999999999999999999999999999999999999999876432 1233456777777
Q ss_pred Hhhh
Q psy410 82 KRCK 85 (93)
Q Consensus 82 ~~~~ 85 (93)
.+++
T Consensus 270 ~~~~ 273 (499)
T TIGR01494 270 KSAK 273 (499)
T ss_pred HHhh
Confidence 7664
The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
>PRK15122 magnesium-transporting ATPase; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=3.6e-17 Score=130.31 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCC--CChHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSL--PPTEPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~--p~~~~l 76 (93)
+++++.|+++|+|+|+++|++.++|.+|+++++|||||||||+|+|.|.+++..+ +++.+......+.| .+.||+
T Consensus 340 t~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~~~~~~~~p~ 419 (903)
T PRK15122 340 SSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSFHQSGMKNLM 419 (903)
T ss_pred HHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCCCCCCCCChH
Confidence 5788899999999999999999999999999999999999999999999987543 22232211111222 346889
Q ss_pred HHHHHHhhhh
Q psy410 77 LAAMEKRCKV 86 (93)
Q Consensus 77 ~~ai~~~~~~ 86 (93)
..|+..++..
T Consensus 420 e~All~~a~~ 429 (903)
T PRK15122 420 DQAVVAFAEG 429 (903)
T ss_pred HHHHHHHHHH
Confidence 9999877653
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.70 E-value=4e-17 Score=129.60 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHH--HHHhhcCCCChHH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLA--PVKRPSSLPPTEP 75 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~--~~~~~s~~p~~~~ 75 (93)
++++++.|.++|+|+|+++|++.++|.+|+++++|||||||||+|+|+|.+++... .++++. .+.+..+..+.||
T Consensus 306 vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p 385 (867)
T TIGR01524 306 VSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNV 385 (867)
T ss_pred HHHHHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCCh
Confidence 36788999999999999999999999999999999999999999999999986543 222222 1212222334577
Q ss_pred HHHHHHHhhh
Q psy410 76 LLAAMEKRCK 85 (93)
Q Consensus 76 l~~ai~~~~~ 85 (93)
+..|+..++.
T Consensus 386 ~~~Al~~~~~ 395 (867)
T TIGR01524 386 LDHAVLAKLD 395 (867)
T ss_pred HHHHHHHHHH
Confidence 8888876654
The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Back Show alignment and domain information
Probab=99.67 E-value=1.8e-16 Score=126.27 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHH--HHhhcCCCChHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAP--VKRPSSLPPTEPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~--~~~~s~~p~~~~l 76 (93)
+++++.|+++|+|+|+++|+++++|.+|+++++|||||||||+|+|.|.++.... +++.+.. +....+....||+
T Consensus 342 t~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~ 421 (902)
T PRK10517 342 TSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLL 421 (902)
T ss_pred HHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHH
Confidence 6788899999999999999999999999999999999999999999999875432 2222221 1111123346778
Q ss_pred HHHHHHhhh
Q psy410 77 LAAMEKRCK 85 (93)
Q Consensus 77 ~~ai~~~~~ 85 (93)
..|+..+.+
T Consensus 422 d~All~~a~ 430 (902)
T PRK10517 422 DTAVLEGVD 430 (902)
T ss_pred HHHHHHHHH
Confidence 888877654
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)
Back Show alignment and domain information
Probab=99.65 E-value=1.8e-16 Score=127.85 Aligned_cols=56 Identities=50% Similarity=0.885 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+++++++|+.||+|+|++||++.++|.+|+++++|||||||||+++|+|.+++..+
T Consensus 418 ~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~ 473 (1054)
T TIGR01657 418 LSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLS 473 (1054)
T ss_pred HHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEeccc
Confidence 46889999999999999999999999999999999999999999999999987653
These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.65 E-value=5.2e-16 Score=123.45 Aligned_cols=54 Identities=28% Similarity=0.384 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
++++++|+++|+|+|+++|++.++|.+|+++++|||||||||+|+|+|.+++..
T Consensus 295 t~~l~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~ 348 (884)
T TIGR01522 295 TVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTS 348 (884)
T ss_pred HHHHHHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEec
Confidence 678999999999999999999999999999999999999999999999988653
The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.63 E-value=8.9e-16 Score=122.74 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++++++|+|+|+++|+++++|.+|+++++|||||||||+|+|.+.+++.
T Consensus 346 vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~ 399 (941)
T TIGR01517 346 VTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYI 399 (941)
T ss_pred HHHHHHHHHHHHHhCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEE
Confidence 367899999999999999999999999999999999999999999999998865
The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type
Back Show alignment and domain information
Probab=99.56 E-value=2.9e-15 Score=120.99 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+|++++.|.+||+++|+++|++.++|++|.+++||+|||||||+++|+|.+++.
T Consensus 329 vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~ 382 (1053)
T TIGR01523 329 LSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWI 382 (1053)
T ss_pred HHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEEE
Confidence 478999999999999999999999999999999999999999999999998753
The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.56 E-value=2.6e-15 Score=119.88 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|++++.+..+|+++++++|++.++|.+|++++||+||||||||++|+|.+++..
T Consensus 318 vti~la~g~~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~ 372 (917)
T COG0474 318 VTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYIN 372 (917)
T ss_pred HHHHHHHHHHHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeC
Confidence 4789999999999999999999999999999999999999999999999999887
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase
Back Show alignment and domain information
Probab=99.56 E-value=4e-15 Score=118.78 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+++++++++++|+++|+++|+++++|.+|+++++|||||||||+|+|++.+++..
T Consensus 259 vti~l~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~ 313 (917)
T TIGR01116 259 ITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVAL 313 (917)
T ss_pred HHHHHHHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEec
Confidence 3678899999999999999999999999999999999999999999999998653
The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit
Back Show alignment and domain information
Probab=99.53 E-value=9.8e-15 Score=117.39 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++.++|+++|+++|++.++|.+|+++++|||||||||+|+|+|.+++.
T Consensus 315 ~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~ 367 (997)
T TIGR01106 315 TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 367 (997)
T ss_pred HHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEE
Confidence 56888999999999999999999999999999999999999999999998763
Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
>KOG0208|consensus
Back Show alignment and domain information
Probab=99.53 E-value=1.5e-14 Score=114.74 Aligned_cols=56 Identities=73% Similarity=1.290 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+|+++.++.+|+.|+||+|.+|.++..+|+++++|||||||||+.++++..+.+.+
T Consensus 438 ltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~ 493 (1140)
T KOG0208|consen 438 LTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVE 493 (1140)
T ss_pred hhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999998863
>KOG0202|consensus
Back Show alignment and domain information
Probab=99.45 E-value=6.7e-14 Score=109.83 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|++++.|.+||+|++.++|...++|++|.+++||.|||||||+|+|.+.+++..
T Consensus 302 vT~tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~ 356 (972)
T KOG0202|consen 302 VTTTLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP 356 (972)
T ss_pred hhhhHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence 5789999999999999999999999999999999999999999999999998765
>KOG0204|consensus
Back Show alignment and domain information
Probab=99.33 E-value=6.6e-13 Score=104.50 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+|+++++++++|.+.+.|+|+.+++|++|+.++||.|||||||+++|.|++.+..+
T Consensus 405 VTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~ 460 (1034)
T KOG0204|consen 405 VTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGS 460 (1034)
T ss_pred HHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeecc
Confidence 47899999999999999999999999999999999999999999999999987653
>KOG0205|consensus
Back Show alignment and domain information
Probab=99.29 E-value=2.4e-12 Score=99.55 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=68.8
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEE--E--EeC--ChhhHHHHHHhhcCCCChH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWG--V--VPV--HDCKFLAPVKRPSSLPPTE 74 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~--~--~~~--~~~~~~~~~~~~s~~p~~~ 74 (93)
+|+.++.|.-|++++|.++|...++|.++.++++|.|||||||.++++|.+ + +.. +.+......+.+|.....+
T Consensus 297 lsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~D 376 (942)
T KOG0205|consen 297 LSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQD 376 (942)
T ss_pred eeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChh
Confidence 467899999999999999999999999999999999999999999999988 3 221 2334433334555666668
Q ss_pred HHHHHHHHhhhh
Q psy410 75 PLLAAMEKRCKV 86 (93)
Q Consensus 75 ~l~~ai~~~~~~ 86 (93)
+|..||+...+.
T Consensus 377 AID~A~v~~L~d 388 (942)
T KOG0205|consen 377 AIDAAIVGMLAD 388 (942)
T ss_pred hHHHHHHHhhcC
Confidence 888888877654
>KOG0209|consensus
Back Show alignment and domain information
Probab=99.20 E-value=2.7e-11 Score=95.60 Aligned_cols=55 Identities=38% Similarity=0.639 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|+|.-.++..++|.|++|..|-+|.-+|++|..|||||||||+..|.|.++-..
T Consensus 449 LSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~ 503 (1160)
T KOG0209|consen 449 LSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGL 503 (1160)
T ss_pred hhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccc
Confidence 4677788899999999999999999999999999999999999999999998764
>KOG0203|consensus
Back Show alignment and domain information
Probab=99.02 E-value=2.5e-10 Score=90.23 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|.++..-.+||+++++++|+.+++|++|...++|.|||||||+++|.|.+++..
T Consensus 336 vTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d 390 (1019)
T KOG0203|consen 336 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFD 390 (1019)
T ss_pred ehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccC
Confidence 4677888999999999999999999999999999999999999999999998765
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase
Back Show alignment and domain information
Probab=99.02 E-value=2.6e-10 Score=92.54 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHC----CeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 10 SRLQKN----NIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 10 ~~~~~~----gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
.+|.++ ++++|+.+..|.+|.++.||+|||||||+++|.+.++..
T Consensus 334 ~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i 382 (1057)
T TIGR01652 334 LQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSI 382 (1057)
T ss_pred hhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEE
Confidence 557653 599999999999999999999999999999999999864
This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.92 E-value=8.6e-10 Score=83.83 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=61.8
Q ss_pred HHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHHHHHHh
Q psy410 7 YAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLAAMEKR 83 (93)
Q Consensus 7 ~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ai~~~ 83 (93)
.|+.|+.+.|++-+++.++|.+|.+|+++.|||||+|.|+-.-.++++... +++.. .+..+....+.|-.++|+..
T Consensus 275 AGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~-aa~lsSl~DeTpEGrSIV~L 353 (681)
T COG2216 275 AGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELAD-AAQLASLADETPEGRSIVEL 353 (681)
T ss_pred hhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHH-HHHHhhhccCCCCcccHHHH
Confidence 578999999999999999999999999999999999999999999998752 33332 23333344445566677776
Q ss_pred hhhh
Q psy410 84 CKVH 87 (93)
Q Consensus 84 ~~~~ 87 (93)
+++.
T Consensus 354 A~~~ 357 (681)
T COG2216 354 AKKL 357 (681)
T ss_pred HHHh
Confidence 6543
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)
Back Show alignment and domain information
Probab=98.74 E-value=1.1e-08 Score=67.99 Aligned_cols=52 Identities=31% Similarity=0.441 Sum_probs=31.8
Q ss_pred ccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHHHhhhh
Q psy410 31 INCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAMEKRCKV 86 (93)
Q Consensus 31 v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~ 86 (93)
|++||||||||||++++.+ .+.....+...+.. .+..+.||+..++..+...
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~~~~~~~~~~~~~-~~~~s~~p~~~~~~~~~~~ 52 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---APPSNEAALAIAAA-LEQGSEHPIGKAIVEFAKN 52 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ESCSHHHHHHHHHH-HHCTSTSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEE---EeccHHHHHHHHHH-hhhcCCCcchhhhhhhhhh
Confidence 5899999999999999999 11333333332222 2223345566666665544
This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
>PLN03190 aminophospholipid translocase; Provisional
Back Show alignment and domain information
Probab=98.62 E-value=4.2e-08 Score=80.74 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=35.6
Q ss_pred eEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 17 IYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 17 il~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+.+|+.+..|.||.|+.||.|||||||+++|.+.++..
T Consensus 439 ~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i 476 (1178)
T PLN03190 439 FQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASI 476 (1178)
T ss_pred ceeccCcchhhhccceEEEEcCCCccccceEEEEEEEE
Confidence 67999999999999999999999999999999998754
>KOG0210|consensus
Back Show alignment and domain information
Probab=97.89 E-value=9.6e-06 Score=64.12 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 15 NNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 15 ~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
.|.++|+...=|.+|++..+..|||||||+++|...+++..
T Consensus 391 pgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLG 431 (1051)
T KOG0210|consen 391 PGTVVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLG 431 (1051)
T ss_pred CceeeecCCChHHhcceEEEEecCcCccccchheeeeeeee
Confidence 37899999999999999999999999999999999998764
>KOG0206|consensus
Back Show alignment and domain information
Probab=97.30 E-value=0.00015 Score=59.97 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred HCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 14 KNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 14 ~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
.....+|..+--|.+|+++.|..|||||||++.|...+...
T Consensus 370 d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi 410 (1151)
T KOG0206|consen 370 DTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSI 410 (1151)
T ss_pred CCccccccCCchhhhcceeEEEEcCcCccccceeeeecccc
Confidence 34677888889999999999999999999999999887654
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B
Back Show alignment and domain information
Probab=88.98 E-value=0.23 Score=32.18 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=12.2
Q ss_pred EEecCCCcCCCCC
Q psy410 34 VCFDKTGTLTEDG 46 (93)
Q Consensus 34 i~fDKTGTLT~~~ 46 (93)
+|||..||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999998
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 93
3rfu_A 736
Copper efflux ATPase; alpha helical, CPC, CXXC, AT
99.76 3j08_A 645
COPA, copper-exporting P-type ATPase A; copper tra
99.76 3j09_A 723
COPA, copper-exporting P-type ATPase A; copper tra
99.75 2yj3_A 263
Copper-transporting ATPase; hydrolase, P-type ATPa
99.55 1mhs_A 920
Proton pump, plasma membrane ATPase; ION transport
99.67 3b8c_A 885
ATPase 2, plasma membrane-type; P-type ATPase, pro
99.65 3ar4_A 995
Sarcoplasmic/endoplasmic reticulum calcium ATPase;
99.59 3ixz_A 1034
Potassium-transporting ATPase alpha; ION pump, H+,
99.58 2zxe_A 1028
Na, K-ATPase alpha subunit; membrane protein, ION
99.57 3a1c_A 287
Probable copper-exporting P-type ATPase A; ATP-bin
99.46 3skx_A 280
Copper-exporting P-type ATPase B; P1B-ATPase, ATP
98.87 2kmv_A 185
Copper-transporting ATPase 1; menkes, nucleotide b
98.32 1svj_A 156
Potassium-transporting ATPase B chain; alpha-beta
98.07 4fe3_A 297
Cytosolic 5'-nucleotidase 3; substrate complex, HA
97.63 2arf_A 165
Wilson disease ATPase; P-type ATPase,ATP7B, copper
97.46 3ewi_A 168
N-acylneuraminate cytidylyltransferase; beta barre
81.45
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Back Hide alignment and structure
Probab=99.76 E-value=7.1e-19 Score=136.46 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC--hhhHH---HHHHhhcCCCChHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH--DCKFL---APVKRPSSLPPTEPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~---~~~~~~s~~p~~~~l 76 (93)
++++.+++++++++|+++|+++++|.+++++++|||||||||+|+|+|.++.... +++.+ ..++..+ .||+
T Consensus 391 p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~l~~aa~le~~s----~hPl 466 (736)
T 3rfu_A 391 PMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNALALAAALEHQS----EHPL 466 (736)
T ss_dssp HHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEEESSSCHHHHHHHHHHHHHSS----CCHH
T ss_pred HHHHHHHHHHHhhcceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEEecCCCHHHHHHHHHHHhhcC----CChH
Confidence 5788999999999999999999999999999999999999999999999987432 23322 2334444 4568
Q ss_pred HHHHHHhhhh
Q psy410 77 LAAMEKRCKV 86 (93)
Q Consensus 77 ~~ai~~~~~~ 86 (93)
+.|+..+++.
T Consensus 467 a~Aiv~~a~~ 476 (736)
T 3rfu_A 467 ANAIVHAAKE 476 (736)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888887754
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Back Show alignment and structure
Probab=99.76 E-value=8.4e-19 Score=134.25 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC--hhhHHHHHHhhcCCCChHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH--DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
++++..++++++|+|+++|+++++|.+|+++++|||||||||+|+|++.++...+ +++++. +....+..+.||++.|
T Consensus 297 p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l~-~aa~~e~~s~hPla~A 375 (645)
T 3j08_A 297 PTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLR-LAAIAERRSEHPIAEA 375 (645)
T ss_dssp HHHHHHHHHHHHTTCCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEESSSCHHHHHH-HHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHCCeEecCchHHHHhhCCCEEEEcCcccccCCCeEEEEEEeCCCCHHHHHH-HHHHHhhcCCChhHHH
Confidence 5678899999999999999999999999999999999999999999999998864 233332 2222333445678888
Q ss_pred HHHhhhh
Q psy410 80 MEKRCKV 86 (93)
Q Consensus 80 i~~~~~~ 86 (93)
+..+++.
T Consensus 376 iv~~a~~ 382 (645)
T 3j08_A 376 IVKKALE 382 (645)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887654
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Back Show alignment and structure
Probab=99.75 E-value=9.8e-19 Score=135.22 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC--hhhHHHHHHhhcCCCChHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH--DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
++++..++++++|+|+++|+++++|.+|+++++|||||||||+|+|++.++...+ +++++. +....+..+.||++.|
T Consensus 375 p~a~~~~~~~~a~~gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~l~-~aa~~e~~s~hP~~~A 453 (723)
T 3j09_A 375 PTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLR-LAAIAERRSEHPIAEA 453 (723)
T ss_dssp HHHHHHHHHHHHTTTCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEESSSCHHHHHH-HHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHCCeEEeChHHHHHhhcCCEEEEcCCCccccCceEEEEEEeCCCCHHHHHH-HHHHHhccCCCchhHH
Confidence 5678899999999999999999999999999999999999999999999998864 233322 2222333445678888
Q ss_pred HHHhhhh
Q psy410 80 MEKRCKV 86 (93)
Q Consensus 80 i~~~~~~ 86 (93)
+..+++.
T Consensus 454 i~~~a~~ 460 (723)
T 3j09_A 454 IVKKALE 460 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887654
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Back Show alignment and structure
Probab=99.55 E-value=6.9e-19 Score=121.36 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=56.5
Q ss_pred HHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCChhhH---HHHHHhhcCCCChHHHHHHHHHh
Q psy410 7 YAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKF---LAPVKRPSSLPPTEPLLAAMEKR 83 (93)
Q Consensus 7 ~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~---~~~~~~~s~~p~~~~l~~ai~~~ 83 (93)
.++++++|+||++|+++++|.++++++||||||||||+|++.+.++. +++++ ...++..|+ ||+++++...
T Consensus 4 ~a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~--~~~~~l~~~~~~e~~s~----hp~a~ai~~~ 77 (263)
T 2yj3_A 4 SLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI--GDSLSLAYAASVEALSS----HPIAKAIVKY 77 (263)
Confidence 57889999999999999999999999999999999999999998874 22222 233334444 5566666665
Q ss_pred hh
Q psy410 84 CK 85 (93)
Q Consensus 84 ~~ 85 (93)
++
T Consensus 78 ~~ 79 (263)
T 2yj3_A 78 AK 79 (263)
Confidence 53
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Back Show alignment and structure
Probab=99.67 E-value=2.5e-17 Score=130.24 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCCh--HHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPT--EPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~--~~l 76 (93)
+++++.|+++++|+|+++|++.++|.+|++++||||||||||+|+|+|.+++... .++.+......++..+. ||+
T Consensus 343 ti~la~g~~~mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g~~~~~ll~~a~l~~~~~~~~~~P~ 422 (920)
T 1mhs_A 343 TTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKKKGIDAI 422 (920)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSCCCCTHHHHHHHHSCCCSSCSCCSH
T ss_pred HHHHHHHHHHHHhCCeEEecCchhhhhccCcEEEECCCCCccccceeEEEEeecCCCCHHHHHHHHHHhcCCcccCCChH
Confidence 6788899999999999999999999999999999999999999999999886542 22232211111121223 667
Q ss_pred HHHHHHhhh
Q psy410 77 LAAMEKRCK 85 (93)
Q Consensus 77 ~~ai~~~~~ 85 (93)
..|+..+++
T Consensus 423 e~Al~~~~~ 431 (920)
T 1mhs_A 423 DKAFLKSLK 431 (920)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Back Show alignment and structure
Probab=99.65 E-value=1.6e-17 Score=130.86 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEE--eC----ChhhHHHHHHhhcCCCChHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVV--PV----HDCKFLAPVKRPSSLPPTEP 75 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~--~~----~~~~~~~~~~~~s~~p~~~~ 75 (93)
++++++|+++++|+|+++|++.++|.+|+++++|||||||||+|+|+|.+.. .. +.++++......+...+.||
T Consensus 294 ti~la~g~~r~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~ll~~aa~~~~~~~~~p 373 (885)
T 3b8c_A 294 SVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDA 373 (885)
T ss_dssp HHTTTHHHHHHTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCCCSSCSSTTHHHHHHHHHHHCCSSSCCS
T ss_pred HHHHHHHHHHHHhCCeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEEEEeccCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5677889999999999999999999999999999999999999999997422 11 12233322222222335677
Q ss_pred HHHHHHHhhh
Q psy410 76 LLAAMEKRCK 85 (93)
Q Consensus 76 l~~ai~~~~~ 85 (93)
+..|+..++.
T Consensus 374 ~~~Al~~~~~ 383 (885)
T 3b8c_A 374 IDAAMVGMLA 383 (885)
T ss_dssp HHHHHHHTTC
T ss_pred hHHHHHHHhh
Confidence 8888888754
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Back Show alignment and structure
Probab=99.59 E-value=8.3e-16 Score=122.04 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++.++|+++|+++|+++++|.+|++++||||||||||+|+|+|.++..
T Consensus 317 t~~la~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~ 369 (995)
T 3ar4_A 317 TTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369 (995)
T ss_dssp HHHHHHHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEe
Confidence 57788999999999999999999999999999999999999999999998864
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Back Show alignment and structure
Probab=99.58 E-value=1.1e-15 Score=121.76 Aligned_cols=54 Identities=28% Similarity=0.355 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
++++++++.++|+++|++||++.++|.+|++++||||||||||+|+|+|.+++.
T Consensus 350 vti~la~~~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~ 403 (1034)
T 3ixz_A 350 VTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWF 403 (1034)
T ss_pred HHHHHHHHHHHHhhCCeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEEEE
Confidence 367899999999999999999999999999999999999999999999998764
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Back Show alignment and structure
Probab=99.57 E-value=8.6e-16 Score=122.43 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++.++|+|+|++||++.++|.+|++++||||||||||+|+|+|.+++.
T Consensus 346 ti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~ 398 (1028)
T 2zxe_A 346 TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 398 (1028)
T ss_dssp HHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEE
T ss_pred HHHHHHHHHHHhhCCceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEEEE
Confidence 67888999999999999999999999999999999999999999999999764
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Back Show alignment and structure
Probab=99.46 E-value=8.4e-14 Score=96.47 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=57.1
Q ss_pred HHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh--hhHHHHHHhhcCCCChHHHHHHHHHhh
Q psy410 7 YAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD--CKFLAPVKRPSSLPPTEPLLAAMEKRC 84 (93)
Q Consensus 7 ~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~--~~~~~~~~~~s~~p~~~~l~~ai~~~~ 84 (93)
-|.++++|+||++|++.++|.+++++.|+||||||||.+.+.+.++....+ ++++.. ....+..+.||++.++...+
T Consensus 8 ~~~~~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~~~~~~l~~-~~~~e~~s~hp~~~a~~~~~ 86 (287)
T 3a1c_A 8 HGSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRL-AAIAERRSEHPIAEAIVKKA 86 (287)
T ss_dssp ------CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSSCHHHHHHH-HHHHTTTCCSHHHHHHHHHH
T ss_pred hhHHHHHHCCEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEeCCCCHHHHHHH-HHHHhhcCCCHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999988776532 233322 22334456678888887766
Q ss_pred hh
Q psy410 85 KV 86 (93)
Q Consensus 85 ~~ 86 (93)
+.
T Consensus 87 ~~ 88 (287)
T 3a1c_A 87 LE 88 (287)
T ss_dssp HH
T ss_pred Hh
Confidence 53
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Back Show alignment and structure
Probab=98.87 E-value=2e-09 Score=72.53 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=45.2
Q ss_pred eeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh--hhHHHHHHhhcCCCChHHHHHHHHHhhhh
Q psy410 19 CISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD--CKFLAPVKRPSSLPPTEPLLAAMEKRCKV 86 (93)
Q Consensus 19 ~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~--~~~~~~~~~~s~~p~~~~l~~ai~~~~~~ 86 (93)
+|+++++|.+++++.|+||++|||+.|+++|..+...++ ..+...+ ...+..+.+++..++...++.
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~a~~~~~~~ 69 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSEDELLQIA-ASLEARSEHPIAAAIVEEAEK 69 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESSSCHHHHHHHH-HHHHTTCCSHHHHHHHHHHHH
T ss_pred CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecCCCHHHHHHHH-HHhhccCCCHHHHHHHHHHHh
Confidence 588999999999999999999999999999999988753 2233222 222223345566676666543
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*
Back Show alignment and structure
Probab=98.32 E-value=8.1e-07 Score=58.80 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=33.2
Q ss_pred CcCCCCCeEEEEEEeCC-----hhhHHHHHHhhcCCCChHHHHHHHHHhhhhh
Q psy410 40 GTLTEDGLDMWGVVPVH-----DCKFLAPVKRPSSLPPTEPLLAAMEKRCKVH 87 (93)
Q Consensus 40 GTLT~~~~~v~~~~~~~-----~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~~ 87 (93)
||||+|+|.|.++..+. +...+..+....+..+.|||++||+.+++..
T Consensus 1 GTLT~G~p~V~~v~~~~~~~~~~~~~lL~laaa~E~~SeHPlA~AIv~~a~~~ 53 (185)
T 2kmv_A 1 SFTMHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCKQE 53 (185)
T ss_dssp CCCCSCCCEEEEEEECSCTTTSCHHHHHHHHHHGGGSSSCHHHHHHHHHHHHH
T ss_pred CCCcCCcEEEEEEEecCCcCCCCHHHHHHHHHHHHccCCCHHHHHHHHHHHhh
Confidence 89999999999998762 2222222334445555677999999988654
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Back Show alignment and structure
Probab=98.07 E-value=8.4e-06 Score=52.61 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHHHHHhhhhh
Q psy410 38 KTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAAMEKRCKVH 87 (93)
Q Consensus 38 KTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~~ 87 (93)
..||||.|++++.++.+.. +++++ .++...+..+.||+++||+++++..
T Consensus 13 ~~~tit~gnr~vt~v~~~~g~~e~elL-~lAAs~E~~SeHPla~AIv~~A~~~ 64 (156)
T 1svj_A 13 SSGHGGRHNRQASEFIPAQGVDEKTLA-DAAQLASLADETPEGRSIVILAKQR 64 (156)
T ss_dssp --------CEEEEEEEECTTSCHHHHH-HHHHHTTSSCCSHHHHHHHHHHHHH
T ss_pred CCCceecCCCeEEEEEecCCCCHHHHH-HHHHHHhCcCCCHHHHHHHHHHHHh
Confidence 4799999999999998763 23333 3445556777888999999988765
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Back Show alignment and structure
Probab=97.63 E-value=8.2e-06 Score=56.33 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHCCeEeeCchhhhhc---------CCccEEEecCCCcCCCCCeEEEE
Q psy410 11 RLQKNNIYCISPRTINVS---------GSINCVCFDKTGTLTEDGLDMWG 51 (93)
Q Consensus 11 ~~~~~gil~k~~~~~e~~---------~~v~~i~fDKTGTLT~~~~~v~~ 51 (93)
.+.|.++++|+++.+|.. .++. ++||||||||++.+....
T Consensus 15 ~l~k~~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~g~~ 63 (297)
T 4fe3_A 15 EFQKSSVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYNGKR 63 (297)
T ss_dssp GGTSTTEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEETTEE
T ss_pred HHhcCCeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccCCeE
Confidence 356889999999999873 2233 688999999997665443
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A
Back Show alignment and structure
Probab=97.46 E-value=8.4e-05 Score=47.99 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCCCeEEEEEEeCC-----h-hhHH---HHHHhhcCCCChHHHHHHHHHhhhhh
Q psy410 42 LTEDGLDMWGVVPVH-----D-CKFL---APVKRPSSLPPTEPLLAAMEKRCKVH 87 (93)
Q Consensus 42 LT~~~~~v~~~~~~~-----~-~~~~---~~~~~~s~~p~~~~l~~ai~~~~~~~ 87 (93)
||+|+|.|.++..+. + .+++ ..++..|+|| |++||+.+++..
T Consensus 1 LT~G~p~V~~v~~~~~~~~~~~~~lL~laaslE~~SeHP----lA~AIv~~a~~~ 51 (165)
T 2arf_A 1 AGHMVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHP----LGVAVTKYCKEE 51 (165)
T ss_dssp CCCCCCCEEEEEECCCTTTSCHHHHHHHHHHHHTTSCST----THHHHHHHHHHH
T ss_pred CCCceeEEEEEEeeCCcCCCCHHHHHHHHHHHHccCCCh----HHHHHHHHHHHh
Confidence 799999999987652 2 3332 3455566655 777888777544
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Back Show alignment and structure
Probab=81.45 E-value=0.82 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.7
Q ss_pred hhcCCccEEEecCCCcCCCCCeEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDM 49 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v 49 (93)
|++.+++.|+||-=||||.+...+
T Consensus 4 ~~~~~ikliv~D~DGtL~d~~~~~ 27 (168)
T 3ewi_A 4 EKLKEIKLLVCNIDGCLTNGHIYV 27 (168)
T ss_dssp ---CCCCEEEEECCCCCSCSCCBC
T ss_pred hhHhcCcEEEEeCccceECCcEEE
Confidence 677889999999999999997644
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 93
d1wpga4 472
Calcium ATPase, transmembrane domain M {Rabbit (Or
97.86 d2a29a1 136
Potassium-transporting ATPase B chain, KdpB {Esche
95.58 d2b8ea2 113
Cation-transporting ATPase {Archaeon Archaeoglobus
95.15 d1wpga2 168
Calcium ATPase, catalytic domain P {Rabbit (Orycto
89.6 d1wr8a_ 230
Phosphoglycolate phosphatase, PGPase {Pyrococcus h
86.56 d2b8ea1 135
Cation-transporting ATPase {Archaeon Archaeoglobus
83.63
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Back Hide information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.86 E-value=1.3e-07 Score=68.03 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCC--CcCCCCCeEE
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKT--GTLTEDGLDM 49 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKT--GTLT~~~~~v 49 (93)
+|+++++|++||+|+|++||+..++|.+|+....|.||| ++|+.+-+.+
T Consensus 200 vti~La~~~~rmak~~~lVr~L~avE~~g~~~~~~~~k~i~~~l~~n~~~v 250 (472)
T d1wpga4 200 ITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEV 250 (472)
T ss_dssp HHHHHHHHHHHHHTTTEEESCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHhHHhhhhhhhhhHHHH
Confidence 478999999999999999999999999999999999998 7888776544
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B chain, KdpB {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Potassium-transporting ATPase B chain, KdpB
species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0066 Score=35.98 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred EEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHHHHHhhhhhc
Q psy410 48 DMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAAMEKRCKVHK 88 (93)
Q Consensus 48 ~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~~~ 88 (93)
++.++.+.+ +++++. ++...+..+.|||++||+++++...
T Consensus 3 q~td~ip~~G~~~~ell~-~AA~aE~~SeHPlakAIv~~Ak~~~ 45 (136)
T d2a29a1 3 QASEFIPAQGVDEKTLAD-AAQLASLADETPEGRSIVILAKQRF 45 (136)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred CcceEEeCCCCCHHHHHH-HHHHHhCCCCchHHHHHHHHHHHhc
Confidence 467888874 333332 3333344556779999999998653
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.15 E-value=0.019 Score=33.20 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=24.4
Q ss_pred EEEEEEeCC--hhhHHHHHHhhcCCCChHHHHHHHHHhhhhh
Q psy410 48 DMWGVVPVH--DCKFLAPVKRPSSLPPTEPLLAAMEKRCKVH 87 (93)
Q Consensus 48 ~v~~~~~~~--~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~~ 87 (93)
+|.++.+.+ +++++. +....+..+.|||++||+.+++.+
T Consensus 1 eVt~i~~~~~~e~elL~-~aaslE~~S~HPlA~AIv~~a~~~ 41 (113)
T d2b8ea2 1 EVTDLVPLNGDERELLR-LAAIAERRSEHPIAEAIVKKALEH 41 (113)
T ss_dssp EEEEEEESSSCHHHHHH-HHHHHTTTCCSHHHHHHHHHHHTT
T ss_pred CceEEEecCCCHHHHHH-HHHHHHCcCCCchHHHHHHHHHHh
Confidence 356666664 334433 334445566677999999988764
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.60 E-value=0.083 Score=32.36 Aligned_cols=16 Identities=56% Similarity=0.912 Sum_probs=14.4
Q ss_pred cEEEecCCCcCCCCCe
Q psy410 32 NCVCFDKTGTLTEDGL 47 (93)
Q Consensus 32 ~~i~fDKTGTLT~~~~ 47 (93)
.++|||+|||||.+..
T Consensus 3 ~~~~~d~~~~~~~~~~ 18 (168)
T d1wpga2 3 SVICSDKTGTLTTNQL 18 (168)
T ss_dssp CEEEECCTTTTBCCCE
T ss_pred EEEEECCccEEEEEec
Confidence 5789999999999986
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.56 E-value=0.16 Score=30.66 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.7
Q ss_pred CccEEEecCCCcCCCCCeE
Q psy410 30 SINCVCFDKTGTLTEDGLD 48 (93)
Q Consensus 30 ~v~~i~fDKTGTLT~~~~~ 48 (93)
+++.|+||.-|||+.++-.
T Consensus 1 kiK~i~~D~DGTL~~~~~~ 19 (230)
T d1wr8a_ 1 KIKAISIDIDGTITYPNRM 19 (230)
T ss_dssp CCCEEEEESTTTTBCTTSC
T ss_pred CceEEEEecCCCCcCCCCc
Confidence 5789999999999976543
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.63 E-value=0.24 Score=29.13 Aligned_cols=15 Identities=60% Similarity=0.904 Sum_probs=13.7
Q ss_pred ccEEEecCCCcCCCC
Q psy410 31 INCVCFDKTGTLTED 45 (93)
Q Consensus 31 v~~i~fDKTGTLT~~ 45 (93)
++.++||++|++|.|
T Consensus 3 ~~~~~~d~~~~~~~g 17 (135)
T d2b8ea1 3 VTAVIFDKTGTLTKG 17 (135)
T ss_dssp CCEEEEECCCCCBCS
T ss_pred EEEEEECCceEEEEe
Confidence 688999999999977
