Psyllid ID: psy4132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccEEEccccccccccccEEEEEEcEEEEEcccccccccccHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEEcccccccHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccEEEEEcccEEEEcccccccccccEEEEEcEEEEEccccEEEEEcEEEEEEEcccccccccccccEEEEEEccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcHHHccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHccccccEEcHHHHcccHHHHccccHHHHHHHHcccccccEEHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccEcHHHHHHHccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccEEcccHHccccc
Coil and Loop (DISEMBL)
mdrfeycsfelspdespvlkhsnvrlydgenksqfqrGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSkavpgknlgpsatsaYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINrqgeiteddsnkdrdgkinfQEFCSIVGNTDIHKKMVVDIRRLGKRfrkldldnsgalsidefmslpelqqnplvQRVIDIfdedrngevdfKEFIQGVSqfsvkgdresKLKFAFRIydidndddYYQALGNELIAALIEPltsaggtmllTDAYCRINRArglellspedLLNSClaldklpdspiylktyssgvkvlqlkscedasFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKlcrdqsieglRFYENKFLLEEN
Flexible Loop (DISEMBL)
mdrfeycsfelspdespvlkhSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSkavpgknlgpSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTvqnksaqqtklreiktrtgivgiernivekqketssninNAFKDLNQLMSMAKEMVEISKNISnkiinrqgeiteddsnkdrdgKINFQEfcsivgntdihkkMVVDIRRLGKRFRKLDLDNSGALSIDEFmslpelqqnpLVQRVIDIFDEDRNGEVDFKEFIqgvsqfsvkgdreskLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAEThgklcrdqsieglRFYENKFLLEEN
Low Complexity Region (SEG)
MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEisknisnkiinRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRiydidndddyyQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN
Disordered region (IsUnstruct)
*************************LY******QFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIV********************************************************KINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLL***
Disordered Region (DISOPRED)
MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNA*************************************DYVKLSFREGIQNEFLDALKSTVDAKIWT*****************************************FKDLNQLMSMAKEMVEISK************ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV**DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVS*NVF*TVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLE**
Disordered Region (DISEMBL)
MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQ********LREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN
Disordered Region (DISPRO)
*DRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTV***********EIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q6DDF4	388	Vacuolar protein-sorting-	N/A	N/A	0.431	0.525	0.429	2e-40
Q9VU87	399	Vacuolar protein-sorting-	yes	N/A	0.441	0.523	0.391	5e-40
Q24214	170	Calcineurin subunit B typ	no	N/A	0.181	0.505	0.906	4e-39
P48451	170	Calcineurin subunit B typ	no	N/A	0.181	0.505	0.906	7e-39
P0C0A2	386	Vacuolar protein-sorting-	yes	N/A	0.437	0.536	0.435	2e-37
Q86VN1	386	Vacuolar protein-sorting-	yes	N/A	0.429	0.525	0.422	3e-37
A5PK00	386	Vacuolar protein-sorting-	yes	N/A	0.429	0.525	0.418	9e-37
P63100	170	Calcineurin subunit B typ	no	N/A	0.181	0.505	0.837	1e-36
Q63810	170	Calcineurin subunit B typ	yes	N/A	0.181	0.505	0.837	1e-36
P63098	170	Calcineurin subunit B typ	no	N/A	0.181	0.505	0.837	1e-36

>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis GN=vps36 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 135/221 (61%), Gaps = 17/221 (7%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF +C+  L  DE+ V++   VRL DGE K++F  G L+LT+HRL W  QK+   C+A
Sbjct: 1   MDRFSWCTGLLDIDETLVIQQRGVRLSDGEEKTKFDSGTLLLTTHRLIWRDQKNHDFCIA 60

Query: 59  LSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFL 118
               Q    E ++   +    KI+++L  A P K  GP  TS Y YVKLSFRE  Q EF 
Sbjct: 61  FPLSQIVFTEEQA-GGIGKSAKIVVHLHPATPNKEPGPYQTSRYSYVKLSFREHGQIEFQ 119

Query: 119 DALKSTVDAKIW---------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSN 168
             L   +  + W         ++Q NK  Q  +++ +    GIVGIER + EK+KET  N
Sbjct: 120 RRLAEELTQRRWERLSASASPSMQMNKGPQTGRIKAV----GIVGIERKLEEKRKETDKN 175

Query: 169 INNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           I+ AF+DL++LM  AKEMVE+SK+I+ KI ++QG+I+ED++
Sbjct: 176 ISEAFEDLSKLMEKAKEMVELSKSIATKIKDKQGDISEDET 216

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Xenopus laevis (taxid: 8355)

>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila melanogaster GN=Vps36 PE=2 SV=2

 Score =  166 bits (419), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 136/230 (59%), Gaps = 21/230 (9%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKD-------I 53
           M+RF Y    LSP+ES V + + V++YDG+ K+ F+ GE++LT+HRLFW +        +
Sbjct: 1   MNRFAYVEARLSPNESFVSRDNRVKIYDGDQKTDFEDGEVVLTTHRLFWGRPGEIARAAV 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
           TLCL LSY+ +  EE  +        +II++L      K  GP  TS   ++KLS + G+
Sbjct: 61  TLCLPLSYVISVSEETTASNFFGRKTRIIMHLHPPTSDKGPGPLDTSRATHIKLSGKNGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKS--------------AQQTKLREIKTRTGIVGIERNIV 159
             EF  AL+ T++A++W +   S                  +L  I+ RTGI GIER++ 
Sbjct: 121 SVEFHSALRETLNARVWEILLTSEIIINGVASSPTLEPANDRLARIQKRTGIGGIERHLE 180

Query: 160 EKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
            K K T  NI  AF+DL+ LM+MAK+MV +SK IS+KI  ++GEI++D++
Sbjct: 181 AKAKATDENIALAFQDLSVLMAMAKDMVGVSKTISSKIRKQKGEISDDET 230

Component of the ESCRT-II complex (ensodomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex (By similarity). ESCRT-II interacts, through the Vps36 subunit, with bicoid mRNA. This interaction is required for the anterior localization of bicoid mRNA in the developing egg.

Drosophila melanogaster (taxid: 7227)

>sp|Q24214|CANB2_DROME Calcineurin subunit B type 2 OS=Drosophila melanogaster GN=CanB2 PE=1 SV=2

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +IRRLGKRFRKLDLDNSGALS+DEFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFIQG
Sbjct: 19  EIRRLGKRFRKLDLDNSGALSVDEFMSLPELQQNPLVQRVIDIFDADGNGEVDFKEFIQG 78

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDND 323
           VSQFSVKGD+ SKL+FAFRIYD+DND
Sbjct: 79  VSQFSVKGDKLSKLRFAFRIYDMDND 104

Calcineurin is a calcium-binding and calmodulin-binding protein found in all cells from yeast to mammals, and a calcium-dependent, calmodulin-stimulated protein phosphatase.

Drosophila melanogaster (taxid: 7227)

>sp|P48451|CANB1_DROME Calcineurin subunit B type 1 OS=Drosophila melanogaster GN=CanB PE=2 SV=1

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFIQG
Sbjct: 19  EIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDADGNGEVDFKEFIQG 78

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDND 323
           VSQFSV+GD+ SKL+FAFRIYD+DND
Sbjct: 79  VSQFSVRGDKLSKLRFAFRIYDMDND 104

Calcineurin is a calcium-binding and calmodulin-binding protein found in all cells from yeast to mammals, and a calcium-dependent, calmodulin-stimulated protein phosphatase.

Drosophila melanogaster (taxid: 7227)

>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus GN=Vps36 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 133/216 (61%), Gaps = 9/216 (4%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct: 1   MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA 60

Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct: 61  IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query: 118 LDALKSTVDAKIW-TVQNKSAQQTKLREIKTR---TGIVGIERNIVEKQKETSSNINNAF 173
              L   +  + W TV    + QTK      R    GIVGIER + EK+KET  NI+ AF
Sbjct: 119 YRRLSEEMTQRRWETVPVSQSLQTKKGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAF 178

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           +DL++LM  AKEMVE+SK+I+NKI  +QG++TED++
Sbjct: 179 EDLSKLMIQAKEMVELSKSIANKIKEKQGDVTEDET 214

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. Its ability to bind ubiquitin probably plays a role in endosomal sorting of ubiquitinated cargo proteins by ESCRT complexes. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. Binds phosphoinosides such as PtdIns(3,4,5)P3.

Rattus norvegicus (taxid: 10116)

>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 137/220 (62%), Gaps = 17/220 (7%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct: 1   MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 60

Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct: 61  ILLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query: 118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
              L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct: 119 YRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query: 170 NNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           + AF+DL++LM  AKEMVE+SK+I+NKI ++QG+ITED++
Sbjct: 175 SEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET 214

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. Its ability to bind ubiquitin probably plays a role in endosomal sorting of ubiquitinated cargo proteins by ESCRT complexes. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. Binds phosphoinosides such as PtdIns(3,4,5)P3.

Homo sapiens (taxid: 9606)

>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus GN=VPS36 PE=2 SV=1

 Score =  155 bits (391), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 136/220 (61%), Gaps = 17/220 (7%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct: 1   MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDPGTLLLSTHRLIWRDQKNHECCMA 60

Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y+KLSF+E  Q EF
Sbjct: 61  IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAASNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query: 118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
              L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct: 119 YRRLSEEMTQRRWENMPVPQSLQTNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query: 170 NNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           + AF+DL++LM  AKEMVE+SK+I+NKI ++QG+ITED++
Sbjct: 175 SEAFEDLSKLMVKAKEMVELSKSIANKIKDKQGDITEDET 214

Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. Its ability to bind ubiquitin probably plays a role in endosomal sorting of ubiquitinated cargo proteins by ESCRT complexes. The ESCRT-II complex may also play a role in transcription regulation, possibly via its interaction with ELL. Binds phosphoinosides such as PtdIns(3,4,5)P3.

Bos taurus (taxid: 9913)

>sp|P63100|CANB1_RAT Calcineurin subunit B type 1 OS=Rattus norvegicus GN=Ppp3r1 PE=1 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 82/86 (95%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 19  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 78

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDND 323
           VSQFSVKGD+E KL+FAFRIYD+D D
Sbjct: 79  VSQFSVKGDKEQKLRFAFRIYDMDKD 104

Regulatory subunit of calcineurin, a calcium-dependent, calmodulin stimulated protein phosphatase, AND MASS SPECTROMETRY. Confers calcium sensitivity.

Rattus norvegicus (taxid: 10116)

>sp|Q63810|CANB1_MOUSE Calcineurin subunit B type 1 OS=Mus musculus GN=Ppp3r1 PE=1 SV=3

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 82/86 (95%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 19  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 78

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDND 323
           VSQFSVKGD+E KL+FAFRIYD+D D
Sbjct: 79  VSQFSVKGDKEQKLRFAFRIYDMDKD 104

Regulatory subunit of calcineurin, a calcium-dependent, calmodulin stimulated protein phosphatase. Confers calcium sensitivity.

Mus musculus (taxid: 10090)

>sp|P63098|CANB1_HUMAN Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 82/86 (95%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 19  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 78

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDND 323
           VSQFSVKGD+E KL+FAFRIYD+D D
Sbjct: 79  VSQFSVKGDKEQKLRFAFRIYDMDKD 104

Regulatory subunit of calcineurin, a calcium-dependent, calmodulin stimulated protein phosphatase. Confers calcium sensitivity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
357622824	400	hypothetical protein KGM_19930 [Danaus p	0.824	0.975	0.315	8e-58
125977740	399	GA10514 [Drosophila pseudoobscura pseudo	0.822	0.974	0.319	2e-53
66559873	402	PREDICTED: vacuolar protein-sorting-asso	0.835	0.982	0.314	1e-51
380014718	402	PREDICTED: vacuolar protein-sorting-asso	0.835	0.982	0.312	2e-50
332026315	402	Vacuolar protein-sorting-associated prot	0.826	0.972	0.311	7e-50
340710112	402	PREDICTED: vacuolar protein-sorting-asso	0.832	0.980	0.302	4e-48
350413529	402	PREDICTED: vacuolar protein-sorting-asso	0.826	0.972	0.300	1e-47
170033357	391	conserved hypothetical protein [Culex qu	0.439	0.531	0.453	1e-43
307180441	402	Vacuolar protein-sorting-associated prot	0.441	0.519	0.436	2e-43
383853409	402	PREDICTED: vacuolar protein-sorting-asso	0.441	0.519	0.449	2e-42

>gi|357622824|gb|EHJ74203.1| hypothetical protein KGM_19930 [Danaus plexippus]

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 234/476 (49%), Gaps = 86/476 (18%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKD-------I 53
           MDRFEY    L   E+ + +  NV++YDGE+K+QF  GE+ILT+HR+ W K        +
Sbjct: 1   MDRFEYIEARLFEGETYLKRDKNVKIYDGEDKTQFVDGEIILTTHRILWGKPGDIPKGLV 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L L YI    EE+  +F L   ++IIL+L  A+PGK  GP+  S + ++K SF++GI
Sbjct: 61  CLSLHLYYIFCVEEESGGVFGLGGPKRIILHLGPALPGKRPGPAVVSPFHFIKFSFKDGI 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
            + F  AL   V AK W ++  +        + + T +           K ++S IN+  
Sbjct: 121 DSVFYKALNDAVAAKAWQIETPNNSN-----LTSPTSVT---------PKTSTSPINS-- 164

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
                              I + I+  +  I E     D+   I FQ+   ++      K
Sbjct: 165 ------------------KIRSGIVGIERSIEEQHKATDQSISIAFQDLTKLMEKA---K 203

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
           +MV   + +  + R                           ++  DI ++D    V FK 
Sbjct: 204 EMVTISKTISSKIR---------------------------EKQGDISEDD---TVRFKS 233

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + AFR     +D +YY  L +++   ++  L   GG M L D
Sbjct: 234 YLMSL------GIDDPVTRDAFR-----SDSEYYMGLSHQIADMIVAALVDCGGIMSLAD 282

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            +CR+NRARGLEL+SPEDLLN+C  L  + D+P+ L+ + SG  VLQL S  D    + T
Sbjct: 283 VWCRVNRARGLELISPEDLLNACKLLQTI-DAPMSLRKFPSGACVLQLNSHRDEEVAKTT 341

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFL 469
            E++  +  +T E+ S++A+VS+++A+ +L   E  G  CRD+SIEGL FY N FL
Sbjct: 342 SELLEASGLLTPEKLSQIANVSVLLAREQLFTTERMGLACRDESIEGLAFYPNLFL 397

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125977740|ref|XP_001352903.1| GA10514 [Drosophila pseudoobscura pseudoobscura] gi|195171580|ref|XP_002026583.1| GL21669 [Drosophila persimilis] gi|54641654|gb|EAL30404.1| GA10514 [Drosophila pseudoobscura pseudoobscura] gi|194111499|gb|EDW33542.1| GL21669 [Drosophila persimilis]

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 232/476 (48%), Gaps = 87/476 (18%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKD-------I 53
           M+RF Y    LS +E+ V + S V+++DG+ K+ F+ GE++LT+HRLFW +        +
Sbjct: 1   MNRFAYVEARLSSNETFVSRDSRVKIFDGDQKTDFEEGEVVLTTHRLFWGRPGEIARAAV 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
           TLCL LSY+ +  EE  +        +IIL+L    P K  GP  TS   ++KLS + G+
Sbjct: 61  TLCLPLSYVISLGEETTASNFFGRKTRIILHLRPPGPDKMPGPLDTSRATHIKLSGKNGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
             EF  AL+ T++A+IW +            + + T I G++R+       TS  +N+  
Sbjct: 121 SMEFHSALRETLNARIWEIS-----------LTSETIIKGVDRS------PTSDPVND-- 161

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
                       +  I K      I R  E     +  D +  + FQ+   ++    + K
Sbjct: 162 -----------RLARIQKRTGIGGIERHLEAKAKAT--DENIALAFQDLSVLM---TMAK 205

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  R R    +  G +S DE                           V FK 
Sbjct: 206 DMVGLSKTISGRIR----EQKGEISDDE--------------------------TVRFKS 235

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +       D  ++  F        ++  Y+ +L  ++   LI+P+   GG M L D
Sbjct: 236 YLMSLG----IDDPVTRDNFT-------SNSAYFSSLAQQICQMLIDPIEEHGGMMSLAD 284

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLL++C  L      PI L+++ SG +VLQL+S +D      T
Sbjct: 285 VYCRVNRARGLELLSPEDLLHACEQLR----GPIRLRSFPSGARVLQLESHDDDLIAIDT 340

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFL 469
            E V     + VE+ ++   +SL++AK RLL+ E  GK+CRD+SIEGLRFY N  L
Sbjct: 341 LEKVQAAESLAVEELAKQLGISLLLAKERLLVTERLGKVCRDESIEGLRFYPNLLL 396

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66559873|ref|XP_395542.2| PREDICTED: vacuolar protein-sorting-associated protein 36 [Apis mellifera]

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 85/480 (17%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK--DIT---- 54
           M+RFEY    L P+E  + +   + LYDG+ K+ F+ GEL+LTSHR  W +  DI+    
Sbjct: 1   MNRFEYADSRLFPNEIYIRRDFGICLYDGDVKTNFESGELVLTSHRFLWGRPGDISRGYT 60

Query: 55  -LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L L +I    EE    F+    +KII++LS+A   K  GP   S Y+Y+K+SF+EG+
Sbjct: 61  CLSLFLRHIVYFEEEIPGPFSFGRSKKIIIHLSEAPIDKMPGPLDNSIYNYIKISFKEGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F   L  T+                +R I   T I+ +            +NI N+ 
Sbjct: 121 DPNFHTHLSDTI----------------MRRIWELTPIMPL--------NHPDTNIKNS- 155

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
            D+N+ +   K            II  +  + E     D    + FQ+   ++   ++ K
Sbjct: 156 GDINKPLPQIK--------TRTGIIGIERSLQEQQKATDESISMAFQDLKKLM---EVAK 204

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  + R    +  G ++ DE                           V FK 
Sbjct: 205 DMVSISKTISTKIR----ERQGDITEDE--------------------------TVRFKS 234

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + A++     N ++Y++ L  +L   L EP+   GG M LTD
Sbjct: 235 YLMSL------GIDDPVTRDAYK-----NSNEYFKQLAKQLADILEEPIKEVGGMMTLTD 283

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLLN+   L  L D PI L+ + SGV VLQ +S +D + V+  
Sbjct: 284 VYCRVNRARGLELLSPEDLLNASRQLASL-DLPIVLRVFDSGVMVLQARSHDDNTIVDII 342

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN 473
            +++ +  F+T E+ ++   +S+++A+ RLL+ E  GK CRD +IE LRFY N FL ++N
Sbjct: 343 ADLIKKKGFLTAEELAQSEGISVLLARERLLVTEKKGKACRDDTIEALRFYPNLFLEKDN 402

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014718|ref|XP_003691367.1| PREDICTED: vacuolar protein-sorting-associated protein 36-like [Apis florea]

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 233/480 (48%), Gaps = 85/480 (17%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK--DIT---- 54
           M+RFEY    L P+E  + +   + LYDG+ K+ F+ GEL+LTSHR  W +  DI+    
Sbjct: 1   MNRFEYADSRLFPNEIYIRRDFGICLYDGDIKTNFESGELVLTSHRFLWGRPGDISRGYT 60

Query: 55  -LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L L +I    EE    F+    +KII++LS+A   K  GP   S Y+Y+K+SF+EG+
Sbjct: 61  CLSLFLRHIVYFEEEIPGPFSFGRSKKIIIHLSEAPIDKMPGPLDNSIYNYIKISFKEGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F   L  T+                +R I   T I+ +            +NI N+ 
Sbjct: 121 DPNFHTHLSDTI----------------MRRIWELTPIMPL--------NHPDTNIKNS- 155

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
            D+N+ +   K            II  +  + E     D    + FQ+   ++   ++ K
Sbjct: 156 GDINKPLPQIK--------TRTGIIGIERSLQEQQKATDESISMAFQDLKKLM---EVAK 204

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  + R    +  G ++ DE                           V FK 
Sbjct: 205 DMVSISKTISTKIR----ERQGDITEDE--------------------------TVRFKS 234

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + A++     N ++Y++ L  +L   L EP+   GG M LTD
Sbjct: 235 YLMSL------GIDDPVTRDAYK-----NSNEYFKQLAKQLADILEEPIKEVGGMMTLTD 283

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLLN+   L  L D PI L+ + SGV VLQ +S +D + V+  
Sbjct: 284 VYCRVNRARGLELLSPEDLLNASRQLASL-DLPIVLRVFDSGVMVLQARSHDDNTIVDII 342

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN 473
            +++ +   +T E+ ++   +S+++A+ RLL+ E  GK CRD +IE LRFY N FL ++N
Sbjct: 343 ADLIKKKGSLTAEELAQSEGISVLLARERLLVTEKKGKACRDDTIEALRFYPNLFLEKDN 402

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026315|gb|EGI66449.1| Vacuolar protein-sorting-associated protein 36 [Acromyrmex echinatior]

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 149/478 (31%), Positives = 230/478 (48%), Gaps = 87/478 (18%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK-------DI 53
           M+RFEY      P+E  V     VRLYDG+ K+ F+ GEL+LTSHR+ W +       + 
Sbjct: 1   MNRFEYADSRFMPNEIYVRCDMIVRLYDGDTKTNFENGELVLTSHRILWGRPGDVQRGNT 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L+L +I    EE    F+    +KI+L+LS+    K  GP+  S Y+YVKLSF+EG+
Sbjct: 61  CLSLSLRHIIFFEEENLRPFSFGRSKKIVLHLSEPAIDKMPGPADNSLYNYVKLSFKEGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F+  L         T+  ++ + T   E+        I  N+ + Q+ T        
Sbjct: 121 DPNFITQLSD-------TIMRRTWEFTPETEL--------IVSNVNDNQRNT-------- 157

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
               +L+   K            II  +  + E     D +  + FQ+   ++   D+ K
Sbjct: 158 ----KLLPHIK--------TRTGIIGIERSLQEKQKETDENISLAFQDLTKLM---DMAK 202

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  + R       G ++ DE                           V FK 
Sbjct: 203 DMVAISKTISVKIRA----RQGDITEDE--------------------------TVRFKA 232

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + A++     + ++Y++ L  +L   L EP+   GG M LTD
Sbjct: 233 YLMSL------GIDDPVTRDAYK-----SSNEYFKQLAKQLACILEEPIKEVGGMMTLTD 281

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLL++   L  L   PI L+++ SGV VLQ+ S  D + V++ 
Sbjct: 282 VYCRVNRARGLELLSPEDLLHASRQLAPL-GLPIVLRSFDSGVMVLQICSHNDNAVVDRI 340

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLE 471
            E++ +   +T E  ++   +S+++A+ RLL+ E +GK CRD SIE LRFY N FL E
Sbjct: 341 TELLKEKKSMTAEDLAQSEGISMLLARERLLVTEKYGKACRDDSIEALRFYPNLFLEE 398

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710112|ref|XP_003393640.1| PREDICTED: vacuolar protein-sorting-associated protein 36-like [Bombus terrestris]

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 231/480 (48%), Gaps = 86/480 (17%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK--DIT---- 54
           M+RFEY    L P+E  + +  ++ +YDG+ K+ F+ GEL+LTSHR  W +  DI+    
Sbjct: 1   MNRFEYADSRLLPNEIYIRRDVSICIYDGDIKTNFESGELVLTSHRFLWGRPGDISRGHT 60

Query: 55  -LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L+L +I    EE    F+    +K++++LS+A   K  GP   S  +Y+K SF+EG+
Sbjct: 61  CLSLSLRHIVFFEEEIPGPFSFGRSKKVVIHLSEAPIDKMPGPLDNSVCNYIKFSFKEGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F   L   +  +IW                  T IV +E           SN  N+ 
Sbjct: 121 DPNFHTHLSDAITRRIWEF----------------TPIVPLE--------HPDSNTKNS- 155

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
           +D+N+ +   K            II  +  + E     D    + FQ+   ++   ++ K
Sbjct: 156 RDINKPLPQIK--------TRTGIIGIERSLQEQQKATDESISMAFQDLKKLM---EVAK 204

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  + R    +  G ++ DE                           V FK 
Sbjct: 205 DMVSISKTISAKIR----ERQGDITEDE--------------------------TVRFKS 234

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + A++     + ++Y++ L  +L   L EP+   GG + LTD
Sbjct: 235 YLMSL------GIDDPVTRDAYK-----SSNEYFKQLAKQLANILEEPIKEVGGMITLTD 283

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLLN+   L  L   PI L+ + SGV VLQ +S +D   V+  
Sbjct: 284 VYCRVNRARGLELLSPEDLLNASRQLASL-GLPIVLRVFDSGVMVLQSRSHDDNVIVDII 342

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLEEN 473
            +++ +   +T E+ ++   +S+++A+ RLL+ E  GK CRD +IE LRFY N F LE+N
Sbjct: 343 ADLIRERGSLTAEELAQSEGISVLLARERLLVTEKRGKACRDDTIEALRFYPNLF-LEQN 401

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413529|ref|XP_003490018.1| PREDICTED: vacuolar protein-sorting-associated protein 36-like [Bombus impatiens]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 227/476 (47%), Gaps = 85/476 (17%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK--DIT---- 54
           M+RFEY    L P+E  + +  ++ +YDG+ K+ F+ GEL+LTSHR  W +  DI+    
Sbjct: 1   MNRFEYADSRLLPNEIYIRRDVSICIYDGDIKTNFESGELVLTSHRFLWGRPGDISRGHT 60

Query: 55  -LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L+L +I    EE    F+    +K++++LS+A   K  GP   S  +Y+K SF+EG+
Sbjct: 61  CLSLSLRHIVFFEEEIPGPFSFGRSKKVVIHLSEAPIDKMPGPLDNSVCNYIKFSFKEGL 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F   L   +  +IW                  T IV +E           SN  N+ 
Sbjct: 121 DPNFHTHLSDAITRRIWEF----------------TPIVPLE--------HPDSNTKNS- 155

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK 233
           +D+N+     K            II  +  + E     D    + FQ+   ++   ++ K
Sbjct: 156 RDINKPPPQIK--------TRTGIIGIERSLQEQQKATDESISMAFQDLKKLM---EVAK 204

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
            MV   + +  + R    +  G ++ DE                           V FK 
Sbjct: 205 DMVSISKTISAKIR----ERQGDITEDE--------------------------TVRFKS 234

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTD 353
           ++  +      G  +   + A++     + ++Y++ L  +L   L EP+   GG + LTD
Sbjct: 235 YLMSL------GIDDPVTRDAYK-----SSNEYFKQLAKQLANILEEPIKEVGGMITLTD 283

Query: 354 AYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT 413
            YCR+NRARGLELLSPEDLLN+   L  L   PI L+ + SGV VLQ +S +D   V+  
Sbjct: 284 VYCRVNRARGLELLSPEDLLNASRQLASL-GLPIVLRVFDSGVMVLQSRSHDDNVIVDVI 342

Query: 414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFL 469
            +++ +   +T E+ ++   +S+++A+ RLL+ E  GK CRD +IE LRFY N FL
Sbjct: 343 ADLIKERGSLTAEELAQSEGISVLLARERLLVTEKRGKACRDDTIEALRFYPNLFL 398

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033357|ref|XP_001844544.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167874282|gb|EDS37665.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 135/216 (62%), Gaps = 8/216 (3%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDI------- 53
           M+RFEYC   L+ +ES V K  NV+LYDG+ K+ +  GE++LTSHRL W ++        
Sbjct: 1   MNRFEYCQARLAENESFVAKDRNVKLYDGDEKTSYDDGEVVLTSHRLLWGRNGEIARGEN 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L L Y+Q+  EE  S       ++IIL L+  +P K  GP   S   +VKLS + G+
Sbjct: 61  ALSLRLRYVQSFGEEEASSMLFGRKKRIILRLAGPLPDKAPGPMDHSVAQFVKLSGKNGV 120

Query: 114 QNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAF 173
              F+ AL  TV AKIW V  +  +    + +  RTGI+GIERN+ +KQK+T  NI+ AF
Sbjct: 121 DAGFVQALHETVAAKIWAVSEEGEKSEPAKRV-LRTGIMGIERNMAQKQKQTDENISLAF 179

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           KDL +LM MAK+MV ISK +S KI  RQG+I+ED++
Sbjct: 180 KDLGKLMEMAKDMVAISKVVSTKIRERQGDISEDET 215

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180441|gb|EFN68467.1| Vacuolar protein-sorting-associated protein 36 [Camponotus floridanus]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 135/227 (59%), Gaps = 18/227 (7%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK-------DI 53
           M+RFEY    L P+E    +   VRLYDG+ K+ F+ GELILTSHR+ W +       + 
Sbjct: 1   MNRFEYADSRLMPNEVYARRDMAVRLYDGDTKTNFEGGELILTSHRILWGRPGDIPRGNT 60

Query: 54  TLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L+L Y+    EE    F+    +KIIL+LS+    K  GP+  S Y+YVKLSF+EG+
Sbjct: 61  CLSLSLRYVVFFEEENPGPFSFGRSKKIILHLSEPAVDKMPGPADNSLYNYVKLSFKEGL 120

Query: 114 QNEFLDALKSTVDAKIW-----------TVQNKSAQQTKLREIKTRTGIVGIERNIVEKQ 162
            + F+  L  T+  ++W              +       L +IK RTGI+GIER++  KQ
Sbjct: 121 DSHFITQLSDTIIKRVWETSTTGLIVLNNAHDNQGNSKLLPQIKPRTGIIGIERSLQAKQ 180

Query: 163 KETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           KET  NI+ AF+DL +LM MAK+MV ISK IS KI  RQG+ITED++
Sbjct: 181 KETDQNISLAFRDLTKLMDMAKDMVAISKTISAKIRERQGDITEDET 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853409|ref|XP_003702215.1| PREDICTED: vacuolar protein-sorting-associated protein 36-like [Megachile rotundata]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 137/229 (59%), Gaps = 20/229 (8%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK--DIT---- 54
           M+RFEY    LSP+E  + + + VRLYDG+ K+ F+ GEL+LTSHR  W K  DI+    
Sbjct: 1   MNRFEYADPRLSPNEIYIRRDTGVRLYDGDVKTTFEGGELVLTSHRFIWGKPGDISRGHT 60

Query: 55  -LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI 113
            L L L Y+   VEE    F+    +K++L LS+A   K  GP  +S Y+YVKLSF+EG+
Sbjct: 61  CLTLFLRYVVYFVEEVPGPFSFGRSKKVVLQLSEAPIDKMPGPLDSSIYNYVKLSFKEGL 120

Query: 114 QNEFLDALKSTVDAKIW-------------TVQNKSAQQTKLREIKTRTGIVGIERNIVE 160
              FL  L   +    W              V+N       L +IKTRTGI+GIER++ E
Sbjct: 121 DPNFLTQLSDAILKMAWEITPAVPLNQSNTNVRNSGDNVKPLPQIKTRTGIIGIERSLQE 180

Query: 161 KQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           +QK T  +I  AF+DL +LM MAK+MV ISK IS KI  RQG+ITED++
Sbjct: 181 QQKATDESILLAFQDLKKLMQMAKDMVAISKTISAKIRERQGDITEDET 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
UNIPROTKB|Q6DDF4	388	vps36 "Vacuolar protein-sortin	0.437	0.533	0.422	1.8e-68
RGD|1309754	386	Vps36 "vacuolar protein sortin	0.437	0.536	0.407	1.1e-66
UNIPROTKB|P0C0A2	386	Vps36 "Vacuolar protein-sortin	0.437	0.536	0.407	1.1e-66
UNIPROTKB|Q86VN1	386	VPS36 "Vacuolar protein-sortin	0.429	0.525	0.395	6.1e-66
UNIPROTKB|F1P5B8	380	VPS36 "Uncharacterized protein	0.399	0.497	0.407	2e-65
UNIPROTKB|F1MT69	386	VPS36 "Vacuolar protein-sortin	0.429	0.525	0.390	2e-65
UNIPROTKB|A5PK00	386	VPS36 "Vacuolar protein-sortin	0.429	0.525	0.390	2.6e-65
UNIPROTKB|F1RMD6	386	VPS36 "Uncharacterized protein	0.429	0.525	0.390	2.6e-65
MGI|MGI:1917410	386	Vps36 "vacuolar protein sortin	0.437	0.536	0.393	4.2e-65
UNIPROTKB|E2QV84	386	VPS36 "Uncharacterized protein	0.298	0.365	0.478	1.4e-64

UNIPROTKB|Q6DDF4 vps36 "Vacuolar protein-sorting-associated protein 36" [Xenopus laevis (taxid:8355)]

 Score = 378 (138.1 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 92/218 (42%), Positives = 123/218 (56%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF +C+  L  DE+ V++   VRL DGE K++F  G L+LT+HRL W  QK+   C+A
Sbjct:     1 MDRFSWCTGLLDIDETLVIQQRGVRLSDGEEKTKFDSGTLLLTTHRLIWRDQKNHDFCIA 60

Query:    59 LSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFL 118
                 Q    E ++   +    KI+++L  A P K  GP  TS Y YVKLSFRE  Q EF 
Sbjct:    61 FPLSQIVFTEEQAG-GIGKSAKIVVHLHPATPNKEPGPYQTSRYSYVKLSFREHGQIEFQ 119

Query:   119 DALKSTVDAKIWTVQNKSA----QQTK---LREIKTRTGIVGIERNIVEKQKETSSNINN 171
               L   +  + W   + SA    Q  K      IK   GIVGIER + EK+KET  NI+ 
Sbjct:   120 RRLAEELTQRRWERLSASASPSMQMNKGPQTGRIKA-VGIVGIERKLEEKRKETDKNISE 178

Query:   172 AFKDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             AF+DL++LM  AKEMVE           +QG+I+ED++
Sbjct:   179 AFEDLSKLMEKAKEMVELSKSIATKIKDKQGDISEDET 216

GO:0005768 "endosome" evidence=ISS

RGD|1309754 Vps36 "vacuolar protein sorting 36 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 88/216 (40%), Positives = 124/216 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-TVQNKSAQQTKLREIKTR---TGIVGIERNIVEKQKETSSNINNAF 173
                L   +  + W TV    + QTK      R    GIVGIER + EK+KET  NI+ AF
Sbjct:   119 YRRLSEEMTQRRWETVPVSQSLQTKKGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAF 178

Query:   174 KDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             +DL++LM  AKEMVE           +QG++TED++
Sbjct:   179 EDLSKLMIQAKEMVELSKSIANKIKEKQGDVTEDET 214

GO:0005634 "nucleus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA;ISO

GO:0005768 "endosome" evidence=ISO;ISS

GO:0005770 "late endosome" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA;ISO

UNIPROTKB|P0C0A2 Vps36 "Vacuolar protein-sorting-associated protein 36" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
 Identities = 88/216 (40%), Positives = 124/216 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-TVQNKSAQQTKLREIKTR---TGIVGIERNIVEKQKETSSNINNAF 173
                L   +  + W TV    + QTK      R    GIVGIER + EK+KET  NI+ AF
Sbjct:   119 YRRLSEEMTQRRWETVPVSQSLQTKKGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAF 178

Query:   174 KDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             +DL++LM  AKEMVE           +QG++TED++
Sbjct:   179 EDLSKLMIQAKEMVELSKSIANKIKEKQGDVTEDET 214

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

UNIPROTKB|Q86VN1 VPS36 "Vacuolar protein-sorting-associated protein 36" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 87/220 (39%), Positives = 127/220 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 ILLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
                L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct:   119 YRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query:   170 NNAFKDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             + AF+DL++LM  AKEMVE           +QG+ITED++
Sbjct:   175 SEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET 214

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

UNIPROTKB|F1P5B8 VPS36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 345 (126.5 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 84/206 (40%), Positives = 117/206 (56%)

Query:    15 ESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLALSYIQNA-VEEAKS 71
             E+ VL+   VRLYDGE K +F  G L+L++HRL W  QK+   C+A+   Q   +EE  +
Sbjct:     9 ETLVLQQRGVRLYDGEEKVKFDSGVLLLSTHRLIWRDQKNHECCIAIPLSQVVFIEEQAA 68

Query:    72 MFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIW- 130
                 +A  KI+ +L  A P K  GP  +S Y Y+KLSF+E  Q EF       +  + W 
Sbjct:    69 GIGKSA--KIVAHLHPASPNKEPGPFQSSKYSYIKLSFKEHGQIEFFRRFSEEITQRRWE 126

Query:   131 ------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMA 183
                   T+Q NK  Q  ++R +    GIVGIER +  K+KET  NI+ AF+DL++LM  A
Sbjct:   127 NMPAGQTIQVNKDPQAGRIRAV----GIVGIERKLEAKRKETDKNISEAFEDLSKLMEKA 182

Query:   184 KEMVEXXXXXXXXXXXRQGEITEDDS 209
             KEMVE           +QG+ITED++
Sbjct:   183 KEMVELSKSIANKIKEKQGDITEDET 208

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|F1MT69 VPS36 "Vacuolar protein-sorting-associated protein 36" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 86/220 (39%), Positives = 126/220 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDPGTLLLSTHRLIWRDQKNHECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAASNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
                L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct:   119 YRRLSEEMTQRRWENMPVPQSLQTNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query:   170 NNAFKDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             + AF+DL++LM  AKEMVE           +QG+ITED++
Sbjct:   175 SEAFEDLSKLMVKAKEMVELSKSIANKIKDKQGDITEDET 214

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

UNIPROTKB|A5PK00 VPS36 "Vacuolar protein-sorting-associated protein 36" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 86/220 (39%), Positives = 126/220 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDPGTLLLSTHRLIWRDQKNHECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAASNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
                L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct:   119 YRRLSEEMTQRRWENMPVPQSLQTNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query:   170 NNAFKDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             + AF+DL++LM  AKEMVE           +QG+ITED++
Sbjct:   175 SEAFEDLSKLMVKAKEMVELSKSIANKIKDKQGDITEDET 214

GO:0005768 "endosome" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

UNIPROTKB|F1RMD6 VPS36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 86/220 (39%), Positives = 126/220 (57%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y+KLSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPSNKEPGPFQSSKNSYIKLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-------TVQ-NKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNI 169
                L   +  + W       ++Q N+  Q  ++R +    GIVGIER + EK+KET  NI
Sbjct:   119 YRRLSEEMTQRRWENMPVSQSLQSNRGPQPGRIRAV----GIVGIERKLEEKRKETDKNI 174

Query:   170 NNAFKDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             + AF+DL++LM  AKEMVE           +QG+ITED++
Sbjct:   175 SEAFEDLSKLMVKAKEMVELSKSIANKIKDKQGDITEDET 214

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

MGI|MGI:1917410 Vps36 "vacuolar protein sorting 36 (yeast)" [Mus musculus (taxid:10090)]

 Score = 343 (125.8 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 85/216 (39%), Positives = 122/216 (56%)

Query:     1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
             MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct:     1 MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA 60

Query:    59 LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
             +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y++LSF+E  Q EF
Sbjct:    61 IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPSNKEPGPFQSSKNSYIRLSFKEHGQIEF 118

Query:   118 LDALKSTVDAKIW-TVQNKSAQQTKLREIKTRT---GIVGIERNIVEKQKETSSNINNAF 173
                L   +  + W TV    + QT       R    GIVGIER + EK+KET  NI+ AF
Sbjct:   119 YRRLSEEMTQRRWETVPVSQSLQTNKGPQPGRVRAVGIVGIERKLEEKRKETDKNISEAF 178

Query:   174 KDLNQLMSMAKEMVEXXXXXXXXXXXRQGEITEDDS 209
             +DL++LM  AKEMVE           +QG++TED++
Sbjct:   179 EDLSKLMIKAKEMVELSKSIANKIKEKQGDVTEDET 214

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=ISO

GO:0005770 "late endosome" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=IC

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IDA

UNIPROTKB|E2QV84 VPS36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 338 (124.0 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 68/142 (47%), Positives = 95/142 (66%)

Query:   330 LGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL 389
             L  +L   L  PL   GG M LT+ YC +NRARG+ELLSPEDL+N+C  L+ L   P+ L
Sbjct:   245 LAKQLAGILQGPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALK-LPLRL 303

Query:   390 KTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETH 449
             + + SGV V++L+S ++   V    E VS+   +T E+F++L  +S+++AK RLLLAE  
Sbjct:   304 RVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKM 363

Query:   450 GKLCRDQSIEGLRFYENKFLLE 471
             G LCRD S+EGLRFY N F+ +
Sbjct:   364 GHLCRDDSVEGLRFYPNLFMTQ 385

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63810	CANB1_MOUSE	No assigned EC number	0.8372	0.1818	0.5058	yes	N/A
P25296	CANB_YEAST	No assigned EC number	0.5465	0.1818	0.4914	yes	N/A
Q24214	CANB2_DROME	No assigned EC number	0.9069	0.1818	0.5058	no	N/A
Q757B7	CANB_ASHGO	No assigned EC number	0.5581	0.1818	0.4914	yes	N/A
Q6CGE6	CANB_YARLI	No assigned EC number	0.5697	0.1818	0.4971	yes	N/A
Q6BWS8	CANB_DEBHA	No assigned EC number	0.5581	0.1818	0.4942	yes	N/A
Q6FLU4	CANB_CANGA	No assigned EC number	0.5581	0.1818	0.4914	yes	N/A
P48451	CANB1_DROME	No assigned EC number	0.9069	0.1818	0.5058	no	N/A
Q874T7	CANB_KLULA	No assigned EC number	0.5632	0.1839	0.4971	yes	N/A
P0CM54	CANB_CRYNJ	No assigned EC number	0.5465	0.1818	0.4914	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	473
cd13226	128	cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like	6e-39
pfam04157	219	pfam04157, EAP30, EAP30/Vps36 family	2e-28
COG5126	160	COG5126, FRQ1, Ca2+-binding protein (EF-Hand super	5e-14
pfam11605	93	pfam11605, Vps36_ESCRT-II, Vacuolar protein sortin	3e-11
pfam04157	219	pfam04157, EAP30, EAP30/Vps36 family	1e-10
cd00051	63	cd00051, EFh, EF-hand, calcium binding motif; A di	2e-09
COG5126	160	COG5126, FRQ1, Ca2+-binding protein (EF-Hand super	2e-06
PTZ00184	149	PTZ00184, PTZ00184, calmodulin; Provisional	1e-05
cd13227	126	cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like	4e-05
pfam13499	60	pfam13499, EF_hand_5, EF-hand domain pair	6e-05
cd00051	63	cd00051, EFh, EF-hand, calcium binding motif; A di	0.004

>gnl|CDD|241380 cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain

 Score =  137 bits (346), Expect = 6e-39
 Identities = 58/128 (45%), Positives = 80/128 (62%), Gaps = 5/128 (3%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + +  L P+E+ V++   VR+YDG+ K+ F  GEL+LTSHRL W  QK+I  CL+
Sbjct: 1   MDRFMWTNGLLEPNETLVIQQRGVRIYDGDEKTNFDSGELVLTSHRLIWRDQKNIERCLS 60

Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           L   Q   +EE  + F  +A  KI+L+L  A P K  GP  +S Y Y+KLSF+EG Q+EF
Sbjct: 61  LPLSQIVFIEEEAAGFGKSA--KIVLHLHPAPPNKEPGPVQSSPYSYIKLSFKEGGQSEF 118

Query: 118 LDALKSTV 125
              L   +
Sbjct: 119 YRRLSEEL 126

ESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. Human/yeast ESCRT-I consists of Tsg101/Vps23, Vps28/Vps28, and a Vps37 homolog/Vps37. Human/yeast ESCRT-II is composed of EAP20/Vps25, EAP30/Vps22, and EAP45/Vps36. Yeast ESCRT-III consists Vps2, Vps20, Vps24, and Snf7 subunits. In contrast, there are three Human paralogs of Snf7 (hSnf7-1/CHMP4A, hSnf7-2/CHMP4B, and hSnf7-3/CHMP4C) and two paralogs of Vps2 (CHMP2A and CHMP2B). Yeast ESCRT-I links directly to ESCRT-II, through a tight interaction of Vps28 (ESCRT-I) with the yeast-specific zinc-finger insertion within the GLUE domain of Vps36. The Vps36 subunit (ESCRT-II) binds ubiquitin using one of its two NZF zinc fingers in its N-terminal region. Human Vps36, EAP45, also binds ubiquitin despite having no NZF domain. Instead, mammalian ESCRT-II interacts with Ub through the Eap45 GLUE domain directly. While yeast Vps36 GLUE shows a preference for the singly phosphorylated PI(3)P, while Eap45 GLUE preferentially binds the triply phosphorylated phosphatidylinositol PI(3,4,5)P3. Structurally, Eap45 GLUE only has a PH-like fold since it lacks the secondary structure element corresponding to the 4 strand, unlike that of yeast Vps36 GLUE. ESCRT-II also interacts with ESCRT-III via a EAP20(Vps25)/CHMP6(Vps20) interaction. The interactions of ESCRT-II GLUE domain with membranes, ESCRT-I, and ubiquitin are critical for ubiquitinated cargo progression from early to late endosomes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 128

>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family

 Score =  111 bits (280), Expect = 2e-28
 Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 322 NDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRAR-GLELLSPEDLLNSCLALD 380
              D+Y  L  +++   +  L   GG + L D Y   NRAR G EL+SPEDLL +C  L+
Sbjct: 85  GVGDFYYELAVQIVEICLATLKENGGIISLQDLYALYNRARGGTELVSPEDLLKACKKLE 144

Query: 381 KLPDSPIYLKTYSSGVKVLQLKS-CEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIA 439
           KL      L    SGV V+Q     E +    K  E+  +   VT  + +     S+  A
Sbjct: 145 KL-GLGFKLVKIGSGVLVVQSVPKSELSEDQTKILELAEELGGVTASELAEKLGWSIGRA 203

Query: 440 KHRLLLAETHGKLCRD 455
           K  L  AE  G L RD
Sbjct: 204 KEVLEKAEKEGLLWRD 219

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219

>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNP---LVQRVIDIFDEDRNGEVDFKE 293
            I+ L + F+  D D+ G +  +E   +   L  NP    + ++ +  D   N  VDF E
Sbjct: 18  QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAG-NETVDFPE 76

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+  +S    +GD+E +L+ AF+++D D+D
Sbjct: 77  FLTVMSVKLKRGDKEEELREAFKLFDKDHD 106

Length = 160

>gnl|CDD|221148 pfam11605, Vps36_ESCRT-II, Vacuolar protein sorting protein 36 Vps36

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 3  RFEYCSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFWQKD-------IT 54
          R       L  +E  +    NV LYDG+ K+   Q G L LT+HRL +          ++
Sbjct: 2  RTTSGRPVLRENEVDIYVQDNVGLYDGDEKTLNRQNGRLYLTTHRLIYVDSADPKKVSLS 61

Query: 55 LCLALSYIQNAVEEAKSMFNLTAGRKIILYLSK 87
          L L+L  + ++ +E  S F L +  KIIL+L  
Sbjct: 62 LPLSLVLVISSSKEYSSGF-LRSSPKIILFLKP 93

Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes. Length = 93

>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 150 GIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDS 209
           GI GIER+  E++K     +  AF+DL  LM  AK+ VE+ ++ + K  +      E  +
Sbjct: 2   GIAGIERSREEQRKYNDLGLQLAFEDLEALMKQAKDFVELLESFAKKHKSEIKANPEFRA 61

Query: 210 NKDRDGKINFQEFCSIVG 227
                    FQ  C+ +G
Sbjct: 62  --------QFQSMCASLG 71

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219

>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 244 KRFRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVS 299
           + FR  D D  G +S DE      SL E      +  +I   D+D +G++DF+EF++ ++
Sbjct: 4   EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. Length = 63

>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 175 DLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK 234
           D N+L  +   +  +  N S   IN+     E D+       ++F EF +++        
Sbjct: 38  DRNELGKI---LRSLGFNPSEAEINKL--FEEIDAGN---ETVDFPEFLTVMSVKLKRGD 89

Query: 235 MVVDIRRLGKRFRKLDLDNSGALSIDE-FMSLPELQQNPLVQRV---IDIFDEDRNGEVD 290
              ++R     F+  D D+ G +SI E    L  L +    + V   +  +DED +GE+D
Sbjct: 90  KEEELREA---FKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEID 146

Query: 291 FKEFIQGVS 299
           ++EF + + 
Sbjct: 147 YEEFKKLIK 155

Length = 160

>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
            I    + F   D D  G ++  E    +  L QNP    +Q +I+  D D NG +DF E
Sbjct: 9   QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+  +++     D E ++K AF+++D D +
Sbjct: 69  FLTLMARKMKDTDSEEEIKEAFKVFDRDGN 98

Length = 149

>gnl|CDD|241381 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 11  LSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFWQKDI-----TLCLALSYIQN 64
           L  +E  +    NV LY G++K    Q G + LTS R+ +  D      ++ + L  I +
Sbjct: 12  LRENEKDIYVDDNVGLYHGKSKILNRQNGRIYLTSQRIIYVDDEDPKKNSVAIELDDIDS 71

Query: 65  AVEEAKSMFNLTAGRKIILYLSKAVPGK-NLGPSATSAYDYVKLS 108
              E  S F L    KIIL+L   +  K  LG S+         S
Sbjct: 72  V--EYSSGF-LKRSPKIILFLKDEINSKSGLGQSSNKTGSQNVTS 113

ESCRT complexes form the main machinery driving protein sorting from endosomes to lysosomes. Yeast/human ESCRT-I consists of Vps23/Tsg101, Vps28/Vps28, and Vps37/Vps37 homolog. Yeast/human ESCRT-II is composed of Vps25/EAP20, Vps22/EAP30, and Vps36/EAP45. Yeast ESCRT-III consists Vps2, Vps20, Vps24, and Snf7 subunits. In contrast, there are three human paralogs of Snf7 (hSnf7-1/CHMP4A, hSnf7-2/CHMP4B, and hSnf7-3/CHMP4C) and two paralogs of Vps2 (CHMP2A and CHMP2B). Yeast ESCRT-I links directly to ESCRT-II, through a tight interaction of Vps28 (ESCRT-I) with the yeast-specific zinc-finger insertion within the GLUE domain of Vps36. The Vps36 subunit (ESCRT-II) binds ubiquitin using one of its two NZF zinc fingers in its N-terminal region. Human Vps36, EAP45, also binds ubiquitin despite having no NZF domain. Instead, mammalian ESCRT-II interacts with Ub through the Eap45 GLUE domain itself. The yeast Vps36 GLUE has a complete PH domain, wherease Eap45 GLUE only has a PH-like fold since it lacks the secondary structure element corresponding to the 4 strand. ESCRT-II also interacts with ESCRT-III via a Vps25(EAP20)/Vps20(CHMP6) interaction. Structure 2CAY is missing this insertion that contains 2 NZF zinc fingers. It is a split PH domain, with a noncanonical lipid binding pocket that binds PI(3)P. The interactions of ESCRT-II GLUE domain with membranes, ESCRT-I, and ubiquitin are critical for ubiquitinated cargo progression from early to late endosomes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 126

>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 247 RKLDLDNSGALSIDEFMSL--------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
           + LD D  G + ++E   L         + +   L++   +  D+D +G + F+EF++ +
Sbjct: 1   KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60

Length = 60

>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 274 VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           ++    +FD+D +G +   E    +         E ++    R  D D D
Sbjct: 2   LREAFRLFDKDGDGTISADELKAALKSLGEGLSEE-EIDEMIREVDKDGD 50

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG2760|consensus	432		100.0
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	99.93
PF04157	223	EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP	99.83
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	99.75
KOG0027|consensus	151		99.65
KOG0027|consensus	151		99.64
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	99.61
KOG3294|consensus	261		99.58
KOG0034|consensus	187		99.57
KOG0028|consensus	172		99.56
PTZ00183	158	centrin; Provisional	99.52
PTZ00184	149	calmodulin; Provisional	99.49
KOG0028|consensus	172		99.47
KOG0044|consensus	193		99.46
KOG0031|consensus	171		99.41
KOG0037|consensus	221		99.33
KOG4223|consensus	325		99.26
KOG0031|consensus	171		99.24
KOG0036|consensus	463		99.19
KOG2643|consensus	489		99.19
KOG0030|consensus	152		99.18
KOG0037|consensus	221		99.18
KOG0038|consensus	189		99.15
PTZ00183	158	centrin; Provisional	99.15
PTZ00184	149	calmodulin; Provisional	99.1
KOG0377|consensus	631		99.06
KOG0030|consensus	152		98.96
KOG0751|consensus	694		98.91
KOG0044|consensus	193		98.87
KOG4223|consensus	325		98.79
KOG0036|consensus	463		98.75
KOG0034|consensus	187		98.73
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	98.65
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	98.65
PLN02964	644	phosphatidylserine decarboxylase	98.47
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	98.47
KOG0038|consensus	189		98.43
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	98.43
cd05025	92	S-100A1 S-100A1: S-100A1 domain found in proteins	98.39
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	98.34
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	98.33
PLN02964	644	phosphatidylserine decarboxylase	98.33
cd05031	94	S-100A10_like S-100A10_like: S-100A10 domain found	98.29
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	98.29
cd00213	88	S-100 S-100: S-100 domain, which represents the la	98.28
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	98.24
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	98.23
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	98.22
cd00052	67	EH Eps15 homology domain; found in proteins implic	98.21
KOG2562|consensus	493		98.14
KOG4251|consensus	362		98.14
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	98.02
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	98.0
KOG2643|consensus	489		97.99
KOG4251|consensus	362		97.89
KOG4666|consensus	412		97.88
cd05025	92	S-100A1 S-100A1: S-100A1 domain found in proteins	97.85
KOG0041|consensus	244		97.83
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	97.81
cd05030	88	calgranulins Calgranulins: S-100 domain found in p	97.76
cd00052	67	EH Eps15 homology domain; found in proteins implic	97.75
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	97.69
cd00051	63	EFh EF-hand, calcium binding motif; A diverse supe	97.67
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	97.66
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	97.63
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	97.59
cd05031	94	S-100A10_like S-100A10_like: S-100A10 domain found	97.58
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	97.57
cd05024	91	S-100A10 S-100A10: A subgroup of the S-100A10 doma	97.56
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	97.55
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	97.53
PF14658	66	EF-hand_9: EF-hand domain	97.45
cd00213	88	S-100 S-100: S-100 domain, which represents the la	97.43
cd00051	63	EFh EF-hand, calcium binding motif; A diverse supe	97.31
KOG2760|consensus	432		97.21
KOG0040|consensus	2399		97.21
KOG2562|consensus	493		97.21
PF14470	96	bPH_3: Bacterial PH domain	97.18
PRK12309	391	transaldolase/EF-hand domain-containing protein; P	97.06
PF10591	113	SPARC_Ca_bdg: Secreted protein acidic and rich in	97.03
KOG0040|consensus	2399		97.02
cd05030	88	calgranulins Calgranulins: S-100 domain found in p	96.97
KOG0377|consensus	631		96.9
KOG0751|consensus	694		96.82
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	96.78
PF14658	66	EF-hand_9: EF-hand domain	96.71
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	96.71
cd05024	91	S-100A10 S-100A10: A subgroup of the S-100A10 doma	96.63
PF12763	104	EF-hand_4: Cytoskeletal-regulatory complex EF hand	96.55
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	96.4
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	96.37
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	96.36
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.08
PF08000	124	bPH_1: Bacterial PH domain; InterPro: IPR012544 Th	95.79
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	95.76
KOG0041|consensus	244		95.61
PRK12309	391	transaldolase/EF-hand domain-containing protein; P	95.26
KOG4666|consensus	412		95.09
KOG3341|consensus	249		94.75
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	94.73
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	94.73
KOG0046|consensus	627		94.56
PF10349	116	WWbp: WW-domain ligand protein; InterPro: IPR01882	94.51
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	94.5
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	94.45
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	94.43
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	94.28
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	94.1
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.01
PF14788	51	EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QA	93.65
PF12763	104	EF-hand_4: Cytoskeletal-regulatory complex EF hand	93.6
PRK15431	78	ferrous iron transport protein FeoC; Provisional	93.11
smart00054	29	EFh EF-hand, calcium binding motif. EF-hands are c	92.88
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	92.68
PF14788	51	EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QA	92.03
PF10591	113	SPARC_Ca_bdg: Secreted protein acidic and rich in	91.97
smart00054	29	EFh EF-hand, calcium binding motif. EF-hands are c	91.72
KOG4065|consensus	144		91.35
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	91.31
KOG0169|consensus	746		90.92
PRK09334	86	30S ribosomal protein S25e; Provisional	90.86
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	90.74
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	90.36
KOG1029|consensus	1118		90.3
TIGR02787	251	codY_Gpos GTP-sensing transcriptional pleiotropic	89.94
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	89.88
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	89.45
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	88.58
COG3355	126	Predicted transcriptional regulator [Transcription	88.44
KOG3555|consensus	434		88.38
COG4901	107	Ribosomal protein S25 [Translation, ribosomal stru	88.22
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	87.65
PHA02943	165	hypothetical protein; Provisional	87.49
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	86.96
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	86.93
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	86.66
PF03297	105	Ribosomal_S25: S25 ribosomal protein; InterPro: IP	86.57
KOG4578|consensus	421		86.46
PRK03902	142	manganese transport transcriptional regulator; Pro	86.26
KOG0035|consensus	890		85.71
PRK11169	164	leucine-responsive transcriptional regulator; Prov	85.69
KOG0169|consensus	746		85.23
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	84.66
PRK10434	256	srlR DNA-bindng transcriptional repressor SrlR; Pr	84.09
COG2345	218	Predicted transcriptional regulator [Transcription	84.08
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	84.01
KOG4065|consensus	144		83.57
KOG0046|consensus	627		83.45
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	83.42
COG1349	253	GlpR Transcriptional regulators of sugar metabolis	83.25
PRK13509	251	transcriptional repressor UlaR; Provisional	82.89
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	82.75
KOG1955|consensus	737		82.5
PRK10906	252	DNA-binding transcriptional repressor GlpR; Provis	82.31
PRK00082	339	hrcA heat-inducible transcription repressor; Provi	82.28
COG1522	154	Lrp Transcriptional regulators [Transcription]	81.28
PRK11050	152	manganese transport regulator MntR; Provisional	80.91
PF09107	50	SelB-wing_3: Elongation factor SelB, winged helix	80.88
PRK06266	178	transcription initiation factor E subunit alpha; V	80.65
PRK09802	269	DNA-binding transcriptional regulator AgaR; Provis	80.57
PF09279	83	EF-hand_like: Phosphoinositide-specific phospholip	80.51
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	80.11

>KOG2760|consensus

Probab=100.00  E-value=5e-63  Score=472.66  Aligned_cols=381  Identities=40%  Similarity=0.638  Sum_probs=329.9

Q ss_pred             CCcccccCCCCCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee-------cCccccccchhhhhHHHhhhhc
Q psy4132           1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ-------KDITLCLALSYIQNAVEEAKSM   72 (473)
Q Consensus         1 ~~~~~~~~~~l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~-------~~~~~~l~l~~v~~~~~~~~~~   72 (473)
                      |+||-|..+.++++|..++...+|.+|||+.+ +.+.+|++.|||||+||.       ...+.++||+.|.+++.+..+=
T Consensus        29 ~~~fg~~~~~~~~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~p~~~~~~~~~~~~pls~vI~v~~~~~~~  108 (432)
T KOG2760|consen   29 MLRFGWSKILRSQNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRSPTSSADVEVTWVCPLSMVINVGEPAKSE  108 (432)
T ss_pred             chhcccchhhhccCceEEEeecceEEecCCCccccccchhhhhhhceeeecCcccccccceeeeeceeEEEEecCccchh
Confidence            88999999999999999999999999999998 999999999999999999       4567899999999999988871


Q ss_pred             ccccCcccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhhhhhccccccccc----c------
Q psy4132          73 FNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTK----L------  142 (473)
Q Consensus        73 ~~~~~s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~~~~~~~~~~~----~------  142 (473)
                      ....+++||+++++++++++.|||-.++...+|+||||++|..+||.++++...++.|++...|.+.+.    .      
T Consensus       109 ~~~g~~~~i~~~~~~~~~~~~~gp~~a~~~~~iqLsFR~~g~~~F~~~l~ee~~~r~we~~~~s~s~~~~r~s~~~~e~~  188 (432)
T KOG2760|consen  109 LTFGKINRIVVILHKPNPRFSPGPCPASTFAFIQLSFRGSGSVDFLEALLEEKNKRIWERNSVSESGVDMRKSSPSHEYE  188 (432)
T ss_pred             hcccccceEEEEeCCCCCcCCCCCcccceeeEEEEEecCCCcHHHHHHHHHHHHHHHHHhccccccccccccCccccccc
Confidence            113999999999999889999999999999999999999999999999999999999998765322110    0      


Q ss_pred             -c--cccccchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeH
Q psy4132         143 -R--EIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINF  219 (473)
Q Consensus       143 -~--~~~~~~gi~gi~r~~~~~~~~~~~~l~eaF~~lD~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f  219 (473)
                       +  ...+++||+||+|+++++.+.+++.|.+||+|++++|.+|++|++|++++.+++...+..++.       |..+.|
T Consensus       189 ~~~~~t~r~vGI~giEr~~e~q~~~td~~i~~AFqDLskLMs~Akemv~Lsk~~~~Km~~~~g~i~d-------Detv~~  261 (432)
T KOG2760|consen  189 VPFIGTLRMVGISGIERSLEEQLKKTDKTINNAFQDLSKLMSLAKEMVSLSKSIAEKMKSKTGEIQD-------DETVRF  261 (432)
T ss_pred             ccccceeeeechhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCc-------hhhhhh
Confidence             1  235689999999999999999999999999999999999999999999999998877666654       234666


Q ss_pred             HHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         220 QEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       220 ~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .+++.-++-                    .                     ++                ++++.|--   
T Consensus       262 ks~llsLGI--------------------~---------------------dp----------------vt~~n~~~---  281 (432)
T KOG2760|consen  262 KSYLLSLGI--------------------L---------------------DP----------------VTKDNFGL---  281 (432)
T ss_pred             HHhhhhhcc--------------------C---------------------Cc----------------chhccccc---
Confidence            666655540                    0                     11                11111100   


Q ss_pred             hcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q psy4132         300 QFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLAL  379 (473)
Q Consensus       300 ~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~  379 (473)
                                            ....|..++.++|.+++...+...+|+|++.|+||.+||++|++++||+|+.++|+.+
T Consensus       282 ----------------------s~~~Y~~~Lakqlse~l~~~lee~ggmisLtdvY~~~NRaRG~eLiSPedl~~ACe~l  339 (432)
T KOG2760|consen  282 ----------------------SLSLYHQELAKQLSEFLRLPLEENGGMISLTDVYCRYNRARGTELISPEDLVNACELL  339 (432)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHhcchhhcCCEEEHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence                                  0013555566899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCeeHHhhhccceeeeecccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         380 DKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       380 D~~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      +.-+ -+|.+..|-+|++|+|.++++++..+-.+...+.+...+++.++|..++||+++|+|+|..||..|.||||+++|
T Consensus       340 e~l~-~pl~L~kf~SGvlvvqlKs~~~~e~l~~~l~~V~~~etl~a~e~A~~l~is~~lakErLl~AE~~G~lcRD~s~e  418 (432)
T KOG2760|consen  340 EHLG-VPLRLRKFNSGVLVVQLKSHSDEEKLVDALEDVSKSETLTASELAKKLGISLGLAKERLLNAEDEGLLCRDDSVE  418 (432)
T ss_pred             HhcC-CceEEEEcCCceEEEEeeccchHHHHHHHHHhccCcchhhHHHHHHHhCchHHHHHHHHHHHHhcCCeeeccCcc
Confidence            9874 499999999999999999999999888888888888899999999999999999999999999999999999999


Q ss_pred             cccccccccCcc
Q psy4132         460 GLRFYENKFLLE  471 (473)
Q Consensus       460 g~~~~~n~~~~~  471 (473)
                      |+|||||.|++.
T Consensus       419 GL~fY~N~f~e~  430 (432)
T KOG2760|consen  419 GLRFYPNLFMES  430 (432)
T ss_pred             ceeecccccccC
Confidence            999999999975

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=99.93  E-value=4.8e-27  Score=185.90  Aligned_cols=83  Identities=37%  Similarity=0.568  Sum_probs=64.5

Q ss_pred             CcccccCCCCCCCCceEEeecceeeecCCCCC-cccCcEEEeeeeeeeee-----cCccccccchhhhhHHHhhhhcccc
Q psy4132           2 DRFEYCSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFWQ-----KDITLCLALSYIQNAVEEAKSMFNL   75 (473)
Q Consensus         2 ~~~~~~~~~l~~~E~~~~~~~~v~ly~g~~~~-~~~~G~l~LTshRii~~-----~~~~~~l~l~~v~~~~~~~~~~~~~   75 (473)
                      +++.|++|.|.+||+++++++||+||||+.|+ +||+|+||||||||||+     ..++++|||++|.++++.+ |||  
T Consensus         1 e~t~s~~p~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~-gf~--   77 (89)
T PF11605_consen    1 ELTSSGRPVLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSA-GFL--   77 (89)
T ss_dssp             -B-TCS-C---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE--STT--
T ss_pred             CcccccCcccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEc-ccc--
Confidence            47889999999999999999999999999996 99999999999999999     3448999999999996665 674  


Q ss_pred             cCcccEEEEeec
Q psy4132          76 TAGRKIILYLSK   87 (473)
Q Consensus        76 ~~s~ki~~~l~~   87 (473)
                      +|||||+++|+|
T Consensus        78 ~sSpKI~l~l~~   89 (89)
T PF11605_consen   78 KSSPKIILHLKP   89 (89)
T ss_dssp             SSS-EEEEEES-
T ss_pred             CCCCeEEEEecC
Confidence            899999999974

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex

Probab=99.83  E-value=2.5e-20  Score=175.67  Aligned_cols=219  Identities=32%  Similarity=0.508  Sum_probs=152.2

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcc
Q psy4132         149 TGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGN  228 (473)
Q Consensus       149 ~gi~gi~r~~~~~~~~~~~~l~eaF~~lD~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~  228 (473)
                      +||+||++..+++.+.++.....+|++++++|..+..|+++..++..+...   .+..   |+  +-.-.|.+.+..++ 
T Consensus         1 ~GI~~l~~~~~~~~~~~~~~~~~a~~dl~~L~~qa~~~~~~l~~fa~k~~~---~i~~---~~--~~r~~f~~~~~~lG-   71 (223)
T PF04157_consen    1 VGIAGLQRRQEQKRQYNELGMQLAFQDLEALMSQAKDFVELLENFARKHKS---EIKS---DP--EFRSQFQSMCASLG-   71 (223)
T ss_dssp             --------------------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCC---SH--HHHHHHHHHHHHHT-
T ss_pred             CchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccC---Cc--hHHHHHHHHHHHcC-
Confidence            599999999999999999999999999999999999999999999887221   1111   00  00001222222222 


Q ss_pred             ccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         229 TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       229 ~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                                                               .+|.+           ...                    
T Consensus        72 -----------------------------------------vdp~~-----------s~~--------------------   79 (223)
T PF04157_consen   72 -----------------------------------------VDPLA-----------SSK--------------------   79 (223)
T ss_dssp             -------------------------------------------CHC-----------CTT--------------------
T ss_pred             -----------------------------------------CCccc-----------chh--------------------
Confidence                                                     01100           000                    


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhh-CCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRAR-GLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~-g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                           .|.. ...+.+.|..++..++.+++......++|+|++.|+|+.+||++ |.+++||+|+.++|+.++..+.| +
T Consensus        80 -----~~s~-~l~~~~~f~~ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~  152 (223)
T PF04157_consen   80 -----FWSE-SLKGSGDFYYELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-F  152 (223)
T ss_dssp             -----CCCC-CCSCHHHHHHHHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-E
T ss_pred             -----hhhh-ccccchhHHHHHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-e
Confidence                 0000 00144567888889999999999999999999999999999999 89999999999999999999777 9


Q ss_pred             eHHhhhccceeeeecccCcH-HHHHHHHHHH--hhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         388 YLKTYSSGVKVLQLKSCEDA-SFVEKTYEIV--SQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       388 s~~EF~~~~~vl~~~~~~~~-~~~~~~~~~~--~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      .+..|-+++.+++..++++. ....++++++  ...+++|+.++++.++||+.+|++.|+.++..|.||||
T Consensus       153 ~l~~~~sg~~vv~s~~~~e~~~~~~~il~~~~~~~~g~vt~~~l~~~~~ws~~~a~~~L~~~~~~G~l~~D  223 (223)
T PF04157_consen  153 RLRKFGSGVKVVQSVPYSELSKDQSRILELAEEENGGGVTASELAEKLGWSVERAKEALEELEREGLLWRD  223 (223)
T ss_dssp             EEEEETTTEEEEECST-CHH-HHHHHHHHHH--TTTSEEEHHHHHHHHTB-HHHHHHHHHHHHHTTSEEEE
T ss_pred             EEEEeCCCcEEEEeCCchhhhHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEeeC
Confidence            99999999999999886665 8889999999  88899999999999999999999999999999999998

The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=99.75  E-value=1.5e-17  Score=145.37  Aligned_cols=139  Identities=27%  Similarity=0.368  Sum_probs=119.0

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      .....++++|+++|..+|+|++|.|+..+|..++ .++.   ...+.+|+..+|. +.+.|+|.+|+.+|.........+
T Consensus        13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~   91 (160)
T COG5126          13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE   91 (160)
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence            4567889999999999999999999999999964 4443   3458899999999 999999999999999999999999


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +++++||+.||+|++|.++.   .++..+|+..                     | +.++++++..+++.+|.|+||.|+
T Consensus        92 Eel~~aF~~fD~d~dG~Is~---~eL~~vl~~l---------------------g-e~~~deev~~ll~~~d~d~dG~i~  146 (160)
T COG5126          92 EELREAFKLFDKDHDGYISI---GELRRVLKSL---------------------G-ERLSDEEVEKLLKEYDEDGDGEID  146 (160)
T ss_pred             HHHHHHHHHhCCCCCceecH---HHHHHHHHhh---------------------c-ccCCHHHHHHHHHhcCCCCCceEe
Confidence            99999999999999965555   5555555521                     2 358999999999999999999999


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      +++|...+.
T Consensus       147 ~~eF~~~~~  155 (160)
T COG5126         147 YEEFKKLIK  155 (160)
T ss_pred             HHHHHHHHh
Confidence            999987654

>KOG0027|consensus

Probab=99.65  E-value=1.5e-15  Score=134.75  Aligned_cols=136  Identities=26%  Similarity=0.396  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCCH---HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc----
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR----  307 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~---~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~----  307 (473)
                      .....+++.+|+.||++++|+|+..||..+ ..++..+   .+..++..+|.+++|.|++++|+.++.........    
T Consensus         4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~   83 (151)
T KOG0027|consen    4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS   83 (151)
T ss_pred             HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence            456788999999999999999999999995 4555554   47899999999999999999999999877655444    


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||+|++|.++.   .+|..+|...                    .  +..+.+++..+++.+|.|+||.|
T Consensus        84 ~~el~eaF~~fD~d~~G~Is~---~el~~~l~~l--------------------g--~~~~~~e~~~mi~~~d~d~dg~i  138 (151)
T KOG0027|consen   84 SEELKEAFRVFDKDGDGFISA---SELKKVLTSL--------------------G--EKLTDEECKEMIREVDVDGDGKV  138 (151)
T ss_pred             HHHHHHHHHHHccCCCCcCcH---HHHHHHHHHh--------------------C--CcCCHHHHHHHHHhcCCCCCCeE
Confidence            459999999999999955555   3444444322                    1  25778999999999999999999


Q ss_pred             eHHhhhccc
Q psy4132         388 YLKTYSSGV  396 (473)
Q Consensus       388 s~~EF~~~~  396 (473)
                      +|++|...+
T Consensus       139 ~f~ef~~~m  147 (151)
T KOG0027|consen  139 NFEEFVKMM  147 (151)
T ss_pred             eHHHHHHHH
Confidence            999998654

>KOG0027|consensus

Probab=99.64  E-value=9.8e-16  Score=135.91  Aligned_cols=134  Identities=24%  Similarity=0.404  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      ..+..++++||+.||+       ..+++..|+.+|.+++..  ++..++..  +|.+++|.|+|++|+.++.........
T Consensus         4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~--el~~~~~~--~D~dg~g~I~~~eF~~l~~~~~~~~~~   79 (151)
T KOG0027|consen    4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEE--ELRDLIKE--IDLDGDGTIDFEEFLDLMEKLGEEKTD   79 (151)
T ss_pred             HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCeEcHHHHHHHHHhhhccccc
Confidence            3455689999999999       789999999999999988  88887765  899999999999999999854332222


Q ss_pred             h-HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 V-VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~-~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      . ...+.++++|+.||.|++|+|+..||+.++ .++.   ...++.+++.+|.|+||.|+|++|+.+|..
T Consensus        80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~  149 (151)
T KOG0027|consen   80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG  149 (151)
T ss_pred             ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence            2 256799999999999999999999999953 3433   345899999999999999999999998864

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=99.61  E-value=3.3e-15  Score=130.62  Aligned_cols=133  Identities=22%  Similarity=0.369  Sum_probs=112.3

Q ss_pred             HHhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         160 EKQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       160 ~~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      +-.+++.+++++||..+|.       ..++...|+++|.+++..  ++..++..  +|. +.+.|+|.+|+.+|+...  
T Consensus        13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~--ei~~l~~~--~d~-~~~~idf~~Fl~~ms~~~--   85 (160)
T COG5126          13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEA--EINKLFEE--IDA-GNETVDFPEFLTVMSVKL--   85 (160)
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHH--HHHHHHHh--ccC-CCCccCHHHHHHHHHHHh--
Confidence            4445667789999999999       789999999999999998  77777764  676 889999999999999432  


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                       ......++++++|+.||.|++|+|+..+|..+.. ++   .+..++.+++.+|+|++|.|+|++|+..+..
T Consensus        86 -~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~  156 (160)
T COG5126          86 -KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD  156 (160)
T ss_pred             -ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence             2455688999999999999999999999999643 33   3456899999999999999999999998754

>KOG3294|consensus

Probab=99.58  E-value=5e-15  Score=133.85  Aligned_cols=110  Identities=21%  Similarity=0.174  Sum_probs=98.6

Q ss_pred             CCCCCCceEEeecceeeecCCC------CCcccCcEEEeeeeeeeee------cCccccccchhhhhHHHhhhhcccccC
Q psy4132          10 ELSPDESPVLKHSNVRLYDGEN------KSQFQRGELILTSHRLFWQ------KDITLCLALSYIQNAVEEAKSMFNLTA   77 (473)
Q Consensus        10 ~l~~~E~~~~~~~~v~ly~g~~------~~~~~~G~l~LTshRii~~------~~~~~~l~l~~v~~~~~~~~~~~~~~~   77 (473)
                      .|..||.++.+-+||.|..++.      ...++.|+||||+|||||+      ...|+.+|+.+|..++..++.|    .
T Consensus        15 l~~n~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf~~mkd~klnQPvF----~   90 (261)
T KOG3294|consen   15 LLYNGESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPFNLMKDVKLNQPVF----G   90 (261)
T ss_pred             EecCCcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchhhhhhhceecCccc----c
Confidence            3778999999999999999883      2568999999999999999      3468999999999999999866    9


Q ss_pred             cccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhh
Q psy4132          78 GRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKI  129 (473)
Q Consensus        78 s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~  129 (473)
                      .+.|+.++.+.+.+      ++.+.+.+||+|++||..+|.+++.++.++-.
T Consensus        91 aNyikGtV~pvpgG------g~~g~as~Kl~F~~GG~ieFgq~~l~~~s~a~  136 (261)
T KOG3294|consen   91 ANYIKGTVQPVPGG------GWEGEASFKLTFNEGGCIEFGQLLLQAASRAS  136 (261)
T ss_pred             cceeeeeEeecCCC------CccceeEEEEEecCCCchhHHHHHHHHHHHHH
Confidence            99999999988887      78899999999999999999999999887644

>KOG0034|consensus

Probab=99.57  E-value=3.8e-14  Score=128.33  Aligned_cols=146  Identities=36%  Similarity=0.554  Sum_probs=116.6

Q ss_pred             cchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCc-ccHHHHHHHHhhcccCCCcHHHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGE-VDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~-I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ....++..|...|..+|.+ ++|+++.+||..+.....++..++++..++.+++|. |+|++|+..++.+......++++
T Consensus        27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl  106 (187)
T KOG0034|consen   27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL  106 (187)
T ss_pred             cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence            3467889999999999999 999999999999998888999999999999999998 99999999999998888889999


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.||+.||.+++|.+..+   ++..++.........+  ..+.             -.+-+...+..+|.++||.|+++|
T Consensus       107 ~faF~vYD~~~~G~I~re---el~~iv~~~~~~~~~~--~~e~-------------~~~i~d~t~~e~D~d~DG~IsfeE  168 (187)
T KOG0034|consen  107 RFAFRVYDLDGDGFISRE---ELKQILRMMVGENDDM--SDEQ-------------LEDIVDKTFEEADTDGDGKISFEE  168 (187)
T ss_pred             HHHHHHhcCCCCCcCcHH---HHHHHHHHHHccCCcc--hHHH-------------HHHHHHHHHHHhCCCCCCcCcHHH
Confidence            999999999999666664   4444444333211111  1111             011134568999999999999999


Q ss_pred             hhccce
Q psy4132         392 YSSGVK  397 (473)
Q Consensus       392 F~~~~~  397 (473)
                      |...+.
T Consensus       169 f~~~v~  174 (187)
T KOG0034|consen  169 FCKVVE  174 (187)
T ss_pred             HHHHHH
Confidence            987664

>KOG0028|consensus

Probab=99.56  E-value=4.4e-14  Score=120.71  Aligned_cols=138  Identities=19%  Similarity=0.289  Sum_probs=116.7

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhccCCH---HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~~~~---~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+.++++.+|..||.+++|+|+.+||+. +..++..+   .+..++..+|+++.|.|+|++|...|+......++.+
T Consensus        27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~e  106 (172)
T KOG0028|consen   27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKE  106 (172)
T ss_pred             ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHH
Confidence            3455668999999999999999999999965 56666553   5778999999999999999999999999888888999


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.+|.|++|.++..++..++.-|.                         +.++++++.++++.+|.++||.|+.
T Consensus       107 Ei~~afrl~D~D~~Gkis~~~lkrvakeLg-------------------------enltD~El~eMIeEAd~d~dgevne  161 (172)
T KOG0028|consen  107 EIKKAFRLFDDDKTGKISQRNLKRVAKELG-------------------------ENLTDEELMEMIEEADRDGDGEVNE  161 (172)
T ss_pred             HHHHHHHcccccCCCCcCHHHHHHHHHHhC-------------------------ccccHHHHHHHHHHhcccccccccH
Confidence            999999999999998777743333333332                         3689999999999999999999999


Q ss_pred             Hhhhccc
Q psy4132         390 KTYSSGV  396 (473)
Q Consensus       390 ~EF~~~~  396 (473)
                      +||...+
T Consensus       162 eEF~~im  168 (172)
T KOG0028|consen  162 EEFIRIM  168 (172)
T ss_pred             HHHHHHH
Confidence            9997654

>PTZ00183 centrin; Provisional

Probab=99.52  E-value=2.6e-13  Score=120.93  Aligned_cols=138  Identities=22%  Similarity=0.315  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...+...+..+|..+|.+++|+|+..||..+.. .+   ....+..++..+|.+++|.|+|.||+.++..........+.
T Consensus        12 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~   91 (158)
T PTZ00183         12 TEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE   91 (158)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH
Confidence            456778899999999999999999999998533 22   23357899999999999999999999988776555566788


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.+|.+++|.+..   .++..++..                    . | ..++++++..+|..+|.+++|.|+++
T Consensus        92 l~~~F~~~D~~~~G~i~~---~e~~~~l~~--------------------~-~-~~l~~~~~~~~~~~~d~~~~g~i~~~  146 (158)
T PTZ00183         92 ILKAFRLFDDDKTGKISL---KNLKRVAKE--------------------L-G-ETITDEELQEMIDEADRNGDGEISEE  146 (158)
T ss_pred             HHHHHHHhCCCCCCcCcH---HHHHHHHHH--------------------h-C-CCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence            999999999999955554   344433332                    1 1 14888999999999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      +|...++
T Consensus       147 ef~~~~~  153 (158)
T PTZ00183        147 EFYRIMK  153 (158)
T ss_pred             HHHHHHh
Confidence            9987664

>PTZ00184 calmodulin; Provisional

Probab=99.49  E-value=4e-13  Score=118.19  Aligned_cols=137  Identities=23%  Similarity=0.330  Sum_probs=108.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      .....+.++..|..+|.+++|.|+.+||..+.. .+   ....+..++..+|.+++|.|+|++|+.++..........+.
T Consensus         6 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~   85 (149)
T PTZ00184          6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE   85 (149)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH
Confidence            456678899999999999999999999998532 22   23357899999999999999999999998876555566788


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|+.||.+++|.+..   .++..++.                    .. |. .++.+++..+|..+|.+++|.|+++
T Consensus        86 ~~~~F~~~D~~~~g~i~~---~e~~~~l~--------------------~~-~~-~~~~~~~~~~~~~~d~~~~g~i~~~  140 (149)
T PTZ00184         86 IKEAFKVFDRDGNGFISA---AELRHVMT--------------------NL-GE-KLTDEEVDEMIREADVDGDGQINYE  140 (149)
T ss_pred             HHHHHHhhCCCCCCeEeH---HHHHHHHH--------------------HH-CC-CCCHHHHHHHHHhcCCCCCCcCcHH
Confidence            999999999999855544   33333332                    21 21 3678889999999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      ||...+
T Consensus       141 ef~~~~  146 (149)
T PTZ00184        141 EFVKMM  146 (149)
T ss_pred             HHHHHH
Confidence            998654

>KOG0028|consensus

Probab=99.47  E-value=2.3e-13  Score=116.38  Aligned_cols=131  Identities=22%  Similarity=0.346  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +++.++++++|++||.       ..++..+|+++|..+.+.  ++..++..  +|+++.|.|+|++|+..|+...   ..
T Consensus        29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~--ei~kll~d--~dk~~~g~i~fe~f~~~mt~k~---~e  101 (172)
T KOG0028|consen   29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKE--EILKLLAD--VDKEGSGKITFEDFRRVMTVKL---GE  101 (172)
T ss_pred             HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchH--HHHHHHHh--hhhccCceechHHHHHHHHHHH---hc
Confidence            3444679999999998       788889999999999988  77777764  8999999999999999988432   23


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .+..++++.+|+.+|.|++|.|+..+|+.+ ..++.   +..+.+|+..+|.+++|.|+-+||..+|..
T Consensus       102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~  170 (172)
T KOG0028|consen  102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK  170 (172)
T ss_pred             cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence            348899999999999999999999999996 45554   446889999999999999999999998864

>KOG0044|consensus

Probab=99.46  E-value=3.4e-13  Score=122.19  Aligned_cols=144  Identities=28%  Similarity=0.502  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhhC-CCCCCCccHHHHhcchhcc---CCH--HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         239 IRRLGKRFRKLD-LDNSGALSIDEFMSLPELQ---QNP--LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       239 ~~~l~~~F~~~D-~d~~G~Is~~el~~l~~~~---~~~--~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      ..+++..++.|= ...+|.++.++|+.+....   .++  .++.+|+.+|.|++|.|+|.||+..++.. ..+..+++++
T Consensus        25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl~  103 (193)
T KOG0044|consen   25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKLK  103 (193)
T ss_pred             HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHhh
Confidence            344444444444 4459999999999964321   122  47899999999999999999999999887 7788999999


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHH-HHHHHhccCCCCCeeHHh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLL-NSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~-~~~~~~D~~~dg~Is~~E  391 (473)
                      ++|++||.|++| ++..  .|+..++..++...+.. ..++           ...+|++.. .+|+.+|.|+||.||++|
T Consensus       104 w~F~lyD~dgdG-~It~--~Eml~iv~~i~~m~~~~-~~~~-----------~~~~~~~~v~~if~k~D~n~Dg~lT~ee  168 (193)
T KOG0044|consen  104 WAFRLYDLDGDG-YITK--EEMLKIVQAIYQMTGSK-ALPE-----------DEETPEERVDKIFSKMDKNKDGKLTLEE  168 (193)
T ss_pred             hhheeecCCCCc-eEcH--HHHHHHHHHHHHHcccc-cCCc-----------ccccHHHHHHHHHHHcCCCCCCcccHHH
Confidence            999999999997 5555  78888888766554331 1111           135666655 689999999999999999


Q ss_pred             hhcccee
Q psy4132         392 YSSGVKV  398 (473)
Q Consensus       392 F~~~~~v  398 (473)
                      |..+++.
T Consensus       169 f~~~~~~  175 (193)
T KOG0044|consen  169 FIEGCKA  175 (193)
T ss_pred             HHHHhhh
Confidence            9998863

>KOG0031|consensus

Probab=99.41  E-value=2.3e-12  Score=109.44  Aligned_cols=133  Identities=14%  Similarity=0.203  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...++++++++|..+|.|++|.|+.++|+.++ .++.   +..++.|+.+    ..|.|+|.-|+.++.......++++.
T Consensus        27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~  102 (171)
T KOG0031|consen   27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEV  102 (171)
T ss_pred             hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHH
Confidence            35789999999999999999999999999964 3333   3345555554    58999999999999999899999999


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..||+.||.+++|.+...   .+.++|..                     .| +.++++++..+++.+..+..|.++|.
T Consensus       103 I~~AF~~FD~~~~G~I~~d---~lre~Ltt---------------------~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~  157 (171)
T KOG0031|consen  103 ILNAFKTFDDEGSGKIDED---YLRELLTT---------------------MG-DRFTDEEVDEMYREAPIDKKGNFDYK  157 (171)
T ss_pred             HHHHHHhcCccCCCccCHH---HHHHHHHH---------------------hc-ccCCHHHHHHHHHhCCcccCCceeHH
Confidence            9999999999999666664   44444432                     11 36899999999999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      +|...+
T Consensus       158 ~~~~~i  163 (171)
T KOG0031|consen  158 AFTYII  163 (171)
T ss_pred             HHHHHH
Confidence            997654

>KOG0037|consensus

Probab=99.33  E-value=2.1e-11  Score=110.10  Aligned_cols=134  Identities=23%  Similarity=0.261  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhc-c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      ....+...|...|+|++|.|+.+||+..+.. .    ...++..|+..||.+.+|+|++.||..++..+       ..++
T Consensus        55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr  127 (221)
T KOG0037|consen   55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR  127 (221)
T ss_pred             ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence            3456788999999999999999999996442 2    23358999999999999999999999999988       8999


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|+.||.|++|.+...|+   ...|..                    +.-  .+||+-...+++++|.-++|.|.+++|
T Consensus       128 ~vF~~~D~D~SG~I~~sEL---~~Al~~--------------------~Gy--~Lspq~~~~lv~kyd~~~~g~i~FD~F  182 (221)
T KOG0037|consen  128 NVFRTYDRDRSGTIDSSEL---RQALTQ--------------------LGY--RLSPQFYNLLVRKYDRFGGGRIDFDDF  182 (221)
T ss_pred             HHHHhcccCCCCcccHHHH---HHHHHH--------------------cCc--CCCHHHHHHHHHHhccccCCceeHHHH
Confidence            9999999999987777444   333332                    111  367777777777777666777777777


Q ss_pred             hccceeeeecc
Q psy4132         393 SSGVKVLQLKS  403 (473)
Q Consensus       393 ~~~~~vl~~~~  403 (473)
                      +++|.+++..+
T Consensus       183 I~ccv~L~~lt  193 (221)
T KOG0037|consen  183 IQCCVVLQRLT  193 (221)
T ss_pred             HHHHHHHHHHH
Confidence            77777666544

>KOG4223|consensus

Probab=99.26  E-value=1.1e-10  Score=111.20  Aligned_cols=171  Identities=17%  Similarity=0.281  Sum_probs=122.8

Q ss_pred             cccCCCCCceeHHHHHHHHcccc------cc----ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCH-----
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTD------IH----KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP-----  272 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~------~~----~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~-----  272 (473)
                      ..|.|.||.|+|+|++..+....      ..    .....-+..-.+.|+.-|.|++|.++.+||..++.....+     
T Consensus       121 ~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~i  200 (325)
T KOG4223|consen  121 EYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDI  200 (325)
T ss_pred             HhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHH
Confidence            47899999999999998776321      00    1112234456778999999999999999999975443232     


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH----HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCc
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE----SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGT  348 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~----e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~  348 (473)
                      .+.+-+..+|+|+||.|+++||+.-|..........    ..-.+.|..+|+|+||.+..   +|+..++.....     
T Consensus       201 Vi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~---dEl~~WI~P~~~-----  272 (325)
T KOG4223|consen  201 VIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDG---DELLDWILPSEQ-----  272 (325)
T ss_pred             HHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCH---HHHhcccCCCCc-----
Confidence            467888999999999999999999887764422221    22346788889999976666   566666653111     


Q ss_pred             cchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeeecc
Q psy4132         349 MLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKS  403 (473)
Q Consensus       349 i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~~~  403 (473)
                                       .....+...+|...|.|+||++|++|.+..--+.-...
T Consensus       273 -----------------d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~FvgSq  310 (325)
T KOG4223|consen  273 -----------------DHAKAEARHLLHEADEDKDGKLSKEEILEHYDVFVGSQ  310 (325)
T ss_pred             -----------------cHHHHHHHHHhhhhccCccccccHHHHhhCcceeeeee
Confidence                             13455678889999999999999999886554443333

>KOG0031|consensus

Probab=99.24  E-value=6e-11  Score=100.88  Aligned_cols=127  Identities=19%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +.+..+++|||..+|+       -.++...+.+||+.+++.  ++..|+.+      ..|.|+|.-|+.+++.+.   ..
T Consensus        28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~--elDaM~~E------a~gPINft~FLTmfGekL---~g   96 (171)
T KOG0031|consen   28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDE--ELDAMMKE------APGPINFTVFLTMFGEKL---NG   96 (171)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHH--HHHHHHHh------CCCCeeHHHHHHHHHHHh---cC
Confidence            4567799999999999       567777889999999988  88888875      578999999999999543   23


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .+..+.+..+|+.||.+++|.|..+.|+.++ ..+   ....++.+++.+-.|..|.++|..|+.++.+
T Consensus        97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith  165 (171)
T KOG0031|consen   97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH  165 (171)
T ss_pred             CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence            4567889999999999999999999999964 333   3446999999999999999999999998863

>KOG0036|consensus

Probab=99.19  E-value=1.8e-10  Score=112.60  Aligned_cols=169  Identities=20%  Similarity=0.221  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-----cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-----QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-----~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      .++...+++..|+.||.+++|.++..++.+....     ........++..+|.|.||.++|.||.+.+..      .+.
T Consensus         9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E~   82 (463)
T KOG0036|consen    9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------KEL   82 (463)
T ss_pred             cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------hHH
Confidence            3456678999999999999999999999973211     12234788999999999999999999998864      467


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      ++..+|...|.+.||.+..                       .|++..+..+.-  .++.+++.++++.+|+++++.|++
T Consensus        83 ~l~~~F~~iD~~hdG~i~~-----------------------~Ei~~~l~~~gi--~l~de~~~k~~e~~d~~g~~~I~~  137 (463)
T KOG0036|consen   83 ELYRIFQSIDLEHDGKIDP-----------------------NEIWRYLKDLGI--QLSDEKAAKFFEHMDKDGKATIDL  137 (463)
T ss_pred             HHHHHHhhhccccCCccCH-----------------------HHHHHHHHHhCC--ccCHHHHHHHHHHhccCCCeeecc
Confidence            7888899999988854444                       444444444332  489999999999999999999999


Q ss_pred             HhhhccceeeeecccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHH
Q psy4132         390 KTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRL  443 (473)
Q Consensus       390 ~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l  443 (473)
                      +||.+......      ++.++.++..+..   ....+|.+...+|-+....+.
T Consensus       138 ~e~rd~~ll~p------~s~i~di~~~W~h---~~~idigE~~~iPdg~s~~e~  182 (463)
T KOG0036|consen  138 EEWRDHLLLYP------ESDLEDIYDFWRH---VLLIDIGEDAVLPDGDSKLEN  182 (463)
T ss_pred             HHHHhhhhcCC------hhHHHHHHHhhhh---heEEEccccccCCcchHHHHh
Confidence            99988765432      5566667666643   344555555555555544443

>KOG2643|consensus

Probab=99.19  E-value=2.4e-11  Score=119.37  Aligned_cols=177  Identities=19%  Similarity=0.265  Sum_probs=118.5

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-------cC-----------
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-------QQ-----------  270 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-------~~-----------  270 (473)
                      ++-+.+|.|+|.||+-++.      ........+.-+|+.||.|+||-|+.+||..+..+       +.           
T Consensus       208 ~~lg~~GLIsfSdYiFLlT------lLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s  281 (489)
T KOG2643|consen  208 YKLGESGLISFSDYIFLLT------LLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNS  281 (489)
T ss_pred             EEcCCCCeeeHHHHHHHHH------HHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccce
Confidence            4778899999999988776      33445667888999999999999999999885322       10           


Q ss_pred             -CHHH-H-HHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCc-----------------------
Q psy4132         271 -NPLV-Q-RVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD-----------------------  324 (473)
Q Consensus       271 -~~~~-~-~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg-----------------------  324 (473)
                       ...+ . -....|.+++++++++++|..++..+     .++.++.-|..||+..+|                       
T Consensus       282 ~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~  356 (489)
T KOG2643|consen  282 FKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKH  356 (489)
T ss_pred             ehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHH
Confidence             0011 1 23455688999999999999988766     223333334444443333                       


Q ss_pred             ---------------hhhHhhHHHHHHHHhch---------hhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhc
Q psy4132         325 ---------------DYYQALGNELIAALIEP---------LTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALD  380 (473)
Q Consensus       325 ---------------~~~~~e~~el~~~L~~~---------~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D  380 (473)
                                     ||+..|+..+.+.+.++         +...++.|+..++..+.....|.+ +|+.-+.-+|..||
T Consensus       357 ~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGve-LSdhVvdvvF~IFD  435 (489)
T KOG2643|consen  357 KYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVE-LSDHVVDVVFTIFD  435 (489)
T ss_pred             HHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcc-cccceeeeEEEEEc
Confidence                           44544444444444432         224555666666666666666654 55444555688899


Q ss_pred             cCCCCCeeHHhhhccce
Q psy4132         381 KLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       381 ~~~dg~Is~~EF~~~~~  397 (473)
                      .|+||.++.+||+..++
T Consensus       436 ~N~Dg~LS~~EFl~Vmk  452 (489)
T KOG2643|consen  436 ENNDGTLSHKEFLAVMK  452 (489)
T ss_pred             cCCCCcccHHHHHHHHH
Confidence            99999999999987664

>KOG0030|consensus

Probab=99.18  E-value=9.6e-11  Score=98.00  Aligned_cols=130  Identities=15%  Similarity=0.253  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      +..++++||..||.       ....+..||+||.+|++.  ++...+....-+.-+-.+|+|++|+.++..-. ......
T Consensus         9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~a--eV~k~l~~~~~~~~~~~rl~FE~fLpm~q~va-knk~q~   85 (152)
T KOG0030|consen    9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNA--EVLKVLGQPKRREMNVKRLDFEEFLPMYQQVA-KNKDQG   85 (152)
T ss_pred             hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHH--HHHHHHcCcccchhhhhhhhHHHHHHHHHHHH-hccccC
Confidence            34789999999999       678889999999999998  66665554222222446899999999887321 224456


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..+++.+..+.||++++|.|...||+.++ .+|.   ..+++.++.-. .|++|.|+|+.|+..+
T Consensus        86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i  149 (152)
T KOG0030|consen   86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI  149 (152)
T ss_pred             cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence            78899999999999999999999999963 4443   33455554433 4678999999999765

>KOG0037|consensus

Probab=99.18  E-value=1.3e-10  Score=104.97  Aligned_cols=100  Identities=27%  Similarity=0.445  Sum_probs=89.1

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccC---CHHHHHHHHHhcCC
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQ---NPLVQRVIDIFDED  284 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~---~~~~~~l~~~~D~d  284 (473)
                      +|.+.+|+|+|.||..+|.          .+..|+.+|+.+|.|++|+|+..||+.. ..++.   ....+.+++.+|.-
T Consensus       103 fd~~~~G~i~f~EF~~Lw~----------~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~  172 (221)
T KOG0037|consen  103 FDRDNSGTIGFKEFKALWK----------YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF  172 (221)
T ss_pred             hcCCCCCccCHHHHHHHHH----------HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc
Confidence            7999999999999999998          7889999999999999999999999994 44443   23478899999988


Q ss_pred             CCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCch
Q psy4132         285 RNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD  325 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~  325 (473)
                      ++|.|.|++|+.++..+       ..+.++|+.+|.+..|.
T Consensus       173 ~~g~i~FD~FI~ccv~L-------~~lt~~Fr~~D~~q~G~  206 (221)
T KOG0037|consen  173 GGGRIDFDDFIQCCVVL-------QRLTEAFRRRDTAQQGS  206 (221)
T ss_pred             cCCceeHHHHHHHHHHH-------HHHHHHHHHhcccccee
Confidence            89999999999999988       78899999999998853

>KOG0038|consensus

Probab=99.15  E-value=3.8e-10  Score=94.90  Aligned_cols=137  Identities=28%  Similarity=0.432  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHhhCCCC-----------CCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccC
Q psy4132         236 VVDIRRLGKRFRKLDLDN-----------SGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK  304 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~-----------~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~  304 (473)
                      ...+-.+...|..+.++-           .-+++.+.+.++.++..+|.-+++.+.|..||.|.++|++|+.+++.+...
T Consensus        24 rKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~  103 (189)
T KOG0038|consen   24 RKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEM  103 (189)
T ss_pred             HHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhh
Confidence            445666777777776531           236788888889999999999999999999999999999999999999888


Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHH----HHHHhc
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLN----SCLALD  380 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~----~~~~~D  380 (473)
                      .+.+-++.-||+.||.|+|+ ++.                      ..|+...+.+.... .+|++++..    +++..|
T Consensus       104 APrdlK~~YAFkIYDfd~D~-~i~----------------------~~DL~~~l~~lTr~-eLs~eEv~~i~ekvieEAD  159 (189)
T KOG0038|consen  104 APRDLKAKYAFKIYDFDGDE-FIG----------------------HDDLEKTLTSLTRD-ELSDEEVELICEKVIEEAD  159 (189)
T ss_pred             ChHHhhhhheeEEeecCCCC-ccc----------------------HHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHhc
Confidence            88889999999999999993 333                      33333333333321 488888765    467899


Q ss_pred             cCCCCCeeHHhhhccc
Q psy4132         381 KLPDSPIYLKTYSSGV  396 (473)
Q Consensus       381 ~~~dg~Is~~EF~~~~  396 (473)
                      .||||++++.||-..+
T Consensus       160 ~DgDgkl~~~eFe~~i  175 (189)
T KOG0038|consen  160 LDGDGKLSFAEFEHVI  175 (189)
T ss_pred             CCCCCcccHHHHHHHH
Confidence            9999999999997654

>PTZ00183 centrin; Provisional

Probab=99.15  E-value=2.6e-10  Score=101.46  Aligned_cols=130  Identities=24%  Similarity=0.362  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      .....+..+|..+|.       ..++...+..+|..+...  .....+.  .+|.+++|.|+|.||...+....   ...
T Consensus        14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~--~~~~l~~--~~d~~~~g~i~~~eF~~~~~~~~---~~~   86 (158)
T PTZ00183         14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKE--EIKQMIA--DVDKDGSGKIDFEEFLDIMTKKL---GER   86 (158)
T ss_pred             HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHH--HHHHHHH--HhCCCCCCcEeHHHHHHHHHHHh---cCC
Confidence            344568888888886       566666677666555544  3344443  26778888888888887765211   111


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .....+..+|+.+|.+++|+|+..||..+.. .+   ....+..++..+|.+++|.|+|++|+.++..
T Consensus        87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~  154 (158)
T PTZ00183         87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK  154 (158)
T ss_pred             CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            2335677888888888888888888887532 22   2334677888888888888888888877643

>PTZ00184 calmodulin; Provisional

Probab=99.10  E-value=5.7e-10  Score=98.01  Aligned_cols=126  Identities=21%  Similarity=0.388  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHH
Q psy4132         166 SSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD  238 (473)
Q Consensus       166 ~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~  238 (473)
                      ...++.+|..+|.       ..++...+..++..+...  ....++.  .+|.+++|.|+|++|+.++....   .....
T Consensus        10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~l~~~~---~~~~~   82 (149)
T PTZ00184         10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMIN--EVDADGNGTIDFPEFLTLMARKM---KDTDS   82 (149)
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHH--HHHHHHH--hcCcCCCCcCcHHHHHHHHHHhc---cCCcH
Confidence            3445566666655       333333333344333322  2222222  24555555566666655544110   00112


Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ...+..+|+.+|.+++|+|+.+||..+.. .+   ....+..++..+|.+++|.|+|+||+.++
T Consensus        83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~  146 (149)
T PTZ00184         83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM  146 (149)
T ss_pred             HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence            23455556666666666666665555321 11   12234555555555555566666555544

>KOG0377|consensus

Probab=99.06  E-value=2.4e-09  Score=105.18  Aligned_cols=206  Identities=17%  Similarity=0.228  Sum_probs=131.4

Q ss_pred             CCCCCCeEEEeccCCCchHHHHHHHHHHhhhhhhhccccccccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q psy4132          98 ATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNKSAQQTKLREIKTRTGIVGIERNIVEKQKETSSNINNAFKDLN  177 (473)
Q Consensus        98 ~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~~~~~~~~~~~~~~~~~~~gi~gi~r~~~~~~~~~~~~l~eaF~~lD  177 (473)
                      ++++++||||.-...++...|++-+.+......++...              ==...++.+.++......+|...|+.+|
T Consensus       409 GSNrGAYikl~~~~~PhfvQY~a~k~t~~~tlrqR~~~--------------vEeSAlk~Lrerl~s~~sdL~~eF~~~D  474 (631)
T KOG0377|consen  409 GSNRGAYIKLGNQLTPHFVQYQAAKQTKRLTLRQRMGI--------------VEESALKELRERLRSHRSDLEDEFRKYD  474 (631)
T ss_pred             cCCCceEEEeCCCCCchHHHHHhhhhhhhhhHHHHhhH--------------HHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence            46789999999989999999998777765555544332              0011266677888888889999999999


Q ss_pred             hhhhHHHHHHHHhhhhhhhhhhhhc--ccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCC
Q psy4132         178 QLMSMAKEMVEISKNISNKIINRQG--EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSG  255 (473)
Q Consensus       178 ~~~e~~~~l~~lg~~~~~~~~~~~~--~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G  255 (473)
                      .-......+..++..+.....-...  ++...-+..+.||.+.|.+-+..+.....                        
T Consensus       475 ~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~------------------------  530 (631)
T KOG0377|consen  475 PKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVI------------------------  530 (631)
T ss_pred             hhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhH------------------------
Confidence            8555554555555444433111110  22222345566788998888776551100                        


Q ss_pred             CccHHHHhc-ch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHH
Q psy4132         256 ALSIDEFMS-LP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGN  332 (473)
Q Consensus       256 ~Is~~el~~-l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~  332 (473)
                         .+|... +. .+- ....++.+|+.+|.|++|.|+.+||..++..+                               
T Consensus       531 ---~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~-------------------------------  576 (631)
T KOG0377|consen  531 ---LEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLL-------------------------------  576 (631)
T ss_pred             ---HHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHH-------------------------------
Confidence               111000 00 000 12235677777777777777777777666433                               


Q ss_pred             HHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeeec
Q psy4132         333 ELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLK  402 (473)
Q Consensus       333 el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~~  402 (473)
                            .+.+.                   +  .++.+++.++++.+|-|+||.|++.||+.+.+++...
T Consensus       577 ------~sh~~-------------------~--~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~  619 (631)
T KOG0377|consen  577 ------SSHMN-------------------G--AISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR  619 (631)
T ss_pred             ------HhhcC-------------------C--CcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence                  11111                   1  3778889999999999999999999999999987653

>KOG0030|consensus

Probab=98.96  E-value=4.7e-09  Score=87.97  Aligned_cols=136  Identities=18%  Similarity=0.234  Sum_probs=103.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhccCCHH---HHHHHHHhcCC--CCCcccHHHHHHHHhhcccC--CC
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDED--RNGEVDFKEFIQGVSQFSVK--GD  306 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~~~~~---~~~l~~~~D~d--~dG~I~~~EF~~~l~~~~~~--~~  306 (473)
                      ..++..+++++|..||..++|+|+..+... ++.++.+|.   +.+.+...+.+  +-.+|+|++|+.++..+...  +.
T Consensus         6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~   85 (152)
T KOG0030|consen    6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG   85 (152)
T ss_pred             CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence            455678999999999999999999999988 466777775   44445555544  34789999999999876443  34


Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .-+..-+-.+.||++++|.+...+++.+...|..                         .++.+++..+..-.. |.+|.
T Consensus        86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe-------------------------kl~eeEVe~Llag~e-D~nG~  139 (152)
T KOG0030|consen   86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE-------------------------KLTEEEVEELLAGQE-DSNGC  139 (152)
T ss_pred             cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh-------------------------hccHHHHHHHHcccc-ccCCc
Confidence            4567778889999999977777666666655552                         588888988876554 45899


Q ss_pred             eeHHhhhccc
Q psy4132         387 IYLKTYSSGV  396 (473)
Q Consensus       387 Is~~EF~~~~  396 (473)
                      |.|+.|+..+
T Consensus       140 i~YE~fVk~i  149 (152)
T KOG0030|consen  140 INYEAFVKHI  149 (152)
T ss_pred             CcHHHHHHHH
Confidence            9999998654

>KOG0751|consensus

Probab=98.91  E-value=1.3e-08  Score=101.48  Aligned_cols=211  Identities=14%  Similarity=0.132  Sum_probs=152.5

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc-------CCHHHHHHHHHh
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ-------QNPLVQRVIDIF  281 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~-------~~~~~~~l~~~~  281 (473)
                      .|..+||.|+|+||..+-.      ..+........+|+.||+.++|.++.+++..+....       .+...+.+-..|
T Consensus        83 aD~tKDglisf~eF~afe~------~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F  156 (694)
T KOG0751|consen   83 ADQTKDGLISFQEFRAFES------VLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF  156 (694)
T ss_pred             hhhcccccccHHHHHHHHh------hccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh
Confidence            5788999999999999765      345667888999999999999999999999863321       111123333355


Q ss_pred             cCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhh--------------cCCC
Q psy4132         282 DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLT--------------SAGG  347 (473)
Q Consensus       282 D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~--------------~~~g  347 (473)
                      ..+....++|.+|.++++.+     ..|..+++|+..|+.++|.++.-.++.++..++..+.              ..+.
T Consensus       157 g~~~~r~~ny~~f~Q~lh~~-----~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H  231 (694)
T KOG0751|consen  157 GDIRKRHLNYAEFTQFLHEF-----QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSH  231 (694)
T ss_pred             hhHHHHhccHHHHHHHHHHH-----HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCcc
Confidence            66667889999999999988     5677999999999999987777677776655554221              1223


Q ss_pred             ccchhHHHHHHHhhhCCCCCCHHHHHHHHH-HhccCCCCCeeHHhhhccceeeeecccCcHHHHHHHHHHHhhCCCCCHH
Q psy4132         348 TMLLTDAYCRINRARGLELLSPEDLLNSCL-ALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVE  426 (473)
Q Consensus       348 ~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~-~~D~~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ls~~  426 (473)
                      .++.+.+ ..+|....    .-+-+.+++. ..+.-+|-.+++++|....+.....+....+++.++.++.+..+.+|..
T Consensus       232 ~vSf~yf-~afnslL~----~melirk~y~s~~~~~~d~~~~kdq~~~~a~~~~q~t~~~idilf~la~~~~~~~~ltl~  306 (694)
T KOG0751|consen  232 QVSFSYF-NAFNSLLN----NMELIRKIYSSLAGTRKDVEVTKDQFSLAAQTSKQVTPLEIDILFQLADLYHPMGRLTLA  306 (694)
T ss_pred             ccchHHH-HHHHHHHh----hHHHHHHHHHHhcccccchhhhHHHHHHHHHHhhccCchhhhhhhhhhhcccccccccHH
Confidence            4555553 23333221    1223445554 4456778899999998877777666666678999999999999999999


Q ss_pred             HHHHhhCCc
Q psy4132         427 QFSRLASVS  435 (473)
Q Consensus       427 e~a~~~~~s  435 (473)
                      +|.+.....
T Consensus       307 Di~~I~p~~  315 (694)
T KOG0751|consen  307 DIERIAPLN  315 (694)
T ss_pred             HHHhhCChh
Confidence            999988543

>KOG0044|consensus

Probab=98.87  E-value=1e-08  Score=93.14  Aligned_cols=138  Identities=20%  Similarity=0.397  Sum_probs=84.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHH
Q psy4132         155 ERNIVEKQKETSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIV  226 (473)
Q Consensus       155 ~r~~~~~~~~~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~  226 (473)
                      +..+.+..+-+.++++.-++.|=.        ..+......+..-. ...  ......-...+|.|+||.|+|.||+..+
T Consensus        14 ~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~-gd~--~~y~~~vF~~fD~~~dg~i~F~Efi~al   90 (193)
T KOG0044|consen   14 LEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPD-GDA--SKYAELVFRTFDKNKDGTIDFLEFICAL   90 (193)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCC-CCH--HHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            333444555566677777776644        22222222232221 111  1222222335788889999999988877


Q ss_pred             ccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch----hccC-----------CHHHHHHHHHhcCCCCCcccH
Q psy4132         227 GNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP----ELQQ-----------NPLVQRVIDIFDEDRNGEVDF  291 (473)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~----~~~~-----------~~~~~~l~~~~D~d~dG~I~~  291 (473)
                      +.    .......+.+..+|+.+|.|++|+|+..|+..+.    .+..           ...++.+|+.+|.|+||.|++
T Consensus        91 s~----~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~  166 (193)
T KOG0044|consen   91 SL----TSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTL  166 (193)
T ss_pred             HH----HcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccH
Confidence            62    2233455677788999999999999988887731    1111           113678888888888888888


Q ss_pred             HHHHHHHh
Q psy4132         292 KEFIQGVS  299 (473)
Q Consensus       292 ~EF~~~l~  299 (473)
                      +||...+.
T Consensus       167 eef~~~~~  174 (193)
T KOG0044|consen  167 EEFIEGCK  174 (193)
T ss_pred             HHHHHHhh
Confidence            88887664

>KOG4223|consensus

Probab=98.79  E-value=1e-07  Score=91.29  Aligned_cols=215  Identities=15%  Similarity=0.121  Sum_probs=139.3

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc----CCHHHHHHHHHhcCC
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ----QNPLVQRVIDIFDED  284 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~----~~~~~~~l~~~~D~d  284 (473)
                      .+.++...+.-.+|.....    ........+.+..+|..+|.+++|.|+..|++......    ....+.+-+...|.|
T Consensus        50 ~~~dhe~~~~d~e~~~~fd----~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~  125 (325)
T KOG4223|consen   50 FQYDHEAFLGDDEFADEFD----QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKN  125 (325)
T ss_pred             cCccccccccchhhhhhhh----hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3444444455455555443    12234577899999999999999999999999843221    122456778889999


Q ss_pred             CCCcccHHHHHHHHhhcccC-------CCcH------HHHHHHhHHhcCCCCchhhHhhHHH--------------HHHH
Q psy4132         285 RNGEVDFKEFIQGVSQFSVK-------GDRE------SKLKFAFRIYDIDNDDDYYQALGNE--------------LIAA  337 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~~~~~~-------~~~~------e~l~~~F~~~D~d~dg~~~~~e~~e--------------l~~~  337 (473)
                      .||.|+|+|+...+......       ...+      ..-+.-|+.-|.|++|..+.+||..              +.+.
T Consensus       126 ~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Et  205 (325)
T KOG4223|consen  126 KDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAET  205 (325)
T ss_pred             ccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHH
Confidence            99999999999888754211       1111      1235669999999999888877722              2344


Q ss_pred             HhchhhcCCCccchhHHHHHHHhhhCCCCCCH----HHHHHHHHHhccCCCCCeeHHhhhccceeeeecccCcHHHHHHH
Q psy4132         338 LIEPLTSAGGTMLLTDAYCRINRARGLELLSP----EDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKT  413 (473)
Q Consensus       338 L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~----~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~  413 (473)
                      |..+.++.+|.|++.|++..+-+..+-+ --|    .+..+++...|+|+||+++-+|..+=+.  .....-...-..+|
T Consensus       206 l~d~Dkn~DG~I~~eEfigd~~~~~~~~-~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~--P~~~d~A~~EA~hL  282 (325)
T KOG4223|consen  206 LEDIDKNGDGKISLEEFIGDLYSHEGNE-EEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL--PSEQDHAKAEARHL  282 (325)
T ss_pred             HhhcccCCCCceeHHHHHhHHhhccCCC-CCcccccccHHHHHHHhhcCCCCccCHHHHhcccC--CCCccHHHHHHHHH
Confidence            4456678889999999998888877511 111    1344778889999999999999764332  11111112222333


Q ss_pred             HHHHh--hCCCCCHHHHHH
Q psy4132         414 YEIVS--QNVFVTVEQFSR  430 (473)
Q Consensus       414 ~~~~~--~~~~ls~~e~a~  430 (473)
                      +.-.+  +.+.||.+||=.
T Consensus       283 ~~eaD~dkD~kLs~eEIl~  301 (325)
T KOG4223|consen  283 LHEADEDKDGKLSKEEILE  301 (325)
T ss_pred             hhhhccCccccccHHHHhh
Confidence            33322  247888888744

>KOG0036|consensus

Probab=98.75  E-value=6.6e-08  Score=94.98  Aligned_cols=128  Identities=19%  Similarity=0.384  Sum_probs=98.9

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhh-hhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKN-ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~-~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      ..++.+.+++..|+.||.       +.++.+.+.++... +...  -....++  ..|.|.||.++|+||...+.     
T Consensus         8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~--~~~~l~~--~~d~~~dg~vDy~eF~~Y~~-----   78 (463)
T KOG0036|consen    8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYE--AAKMLFS--AMDANRDGRVDYSEFKRYLD-----   78 (463)
T ss_pred             CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchH--HHHHHHH--hcccCcCCcccHHHHHHHHH-----
Confidence            445667889999999998       55555556666544 2222  1222333  47999999999999999887     


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                          ..+.++...|+.+|.+.||.|+.+|+.. +..++   .+..++.+++.+|+++++.|+++||...+...
T Consensus        79 ----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~  147 (463)
T KOG0036|consen   79 ----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY  147 (463)
T ss_pred             ----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence                5677899999999999999999999988 34443   34457889999999999999999999887655

>KOG0034|consensus

Probab=98.73  E-value=1.3e-07  Score=85.90  Aligned_cols=128  Identities=22%  Similarity=0.396  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhhhh-------hhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCc-eeHHHHHHHHccccccccc
Q psy4132         164 ETSSNINNAFKDLNQL-------MSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGK-INFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~~-------~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~-I~f~EF~~~~~~~~~~~~~  235 (473)
                      +....|-+-|..||..       .+--..+-.+..+|-..  .+-     +.+|.+++|. |+|.+|+..++   .....
T Consensus        30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~--rI~-----~~f~~~~~~~~v~F~~Fv~~ls---~f~~~   99 (187)
T KOG0034|consen   30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLAD--RII-----DRFDTDGNGDPVDFEEFVRLLS---VFSPK   99 (187)
T ss_pred             HHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHH--HHH-----HHHhccCCCCccCHHHHHHHHh---hhcCC
Confidence            3344577777777763       11112222444444333  111     2356677776 99999999887   23333


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc----cCC---H----HHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL----QQN---P----LVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~----~~~---~----~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ....++++-+|+.+|.+++|+|+.+|+..+...    ...   .    .++.++..+|.|+||.|+|+||++++...
T Consensus       100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~  176 (187)
T KOG0034|consen  100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ  176 (187)
T ss_pred             ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence            445579999999999999999999999995221    112   1    26889999999999999999999988654

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=98.65  E-value=4.2e-08  Score=73.88  Aligned_cols=58  Identities=28%  Similarity=0.549  Sum_probs=48.2

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcchhccC----C----HHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLPELQQ----N----PLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~~~~~----~----~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      +++++|+.+|.|++|+|+.+||..+.....    .    ..++.+++.+|.|++|.|+|+||+.+|
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~   66 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM   66 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence            478999999999999999999999643222    1    236777999999999999999999875

...

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=98.65  E-value=8.1e-08  Score=76.65  Aligned_cols=66  Identities=20%  Similarity=0.364  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHhhCC-CCCCCccHHHHhcchh--cc---CC-HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDL-DNSGALSIDEFMSLPE--LQ---QN-PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~-d~~G~Is~~el~~l~~--~~---~~-~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+..+|+.||+ +++|+|+..||+.++.  ++   .. ..++.+++.+|.|+||.|+|+||+.++..+
T Consensus         4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l   76 (89)
T cd05022           4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL   76 (89)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            4566789999999999 9999999999999643  33   24 679999999999999999999999998765

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>PLN02964 phosphatidylserine decarboxylase

Probab=98.47  E-value=6.7e-07  Score=95.37  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             eeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhcc----CCH---HHHHHHHHhcCCCCCc
Q psy4132         217 INFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQ----QNP---LVQRVIDIFDEDRNGE  288 (473)
Q Consensus       217 I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~----~~~---~~~~l~~~~D~d~dG~  288 (473)
                      +++++...... ..+......+.++++++|..+|+|++|++    +..+ ..++    ...   .++++|+.+|.|++|.
T Consensus       121 ~s~n~lv~~~e-~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~  195 (644)
T PLN02964        121 LSKNTLVGYCE-LDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQ  195 (644)
T ss_pred             CCHHHhhhhee-ecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCe
Confidence            45555444332 11123345678999999999999999997    3332 2222    112   2689999999999999


Q ss_pred             ccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHH
Q psy4132         289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIA  336 (473)
Q Consensus       289 I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~  336 (473)
                      |+|+||+.++..+ .....++++..+|+.||+|++|.+..+|+.+++.
T Consensus       196 IdfdEFl~lL~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~  242 (644)
T PLN02964        196 LSFSEFSDLIKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLA  242 (644)
T ss_pred             EcHHHHHHHHHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            9999999999876 3456788999999999999997777754444433

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=98.47  E-value=3.1e-07  Score=74.23  Aligned_cols=67  Identities=24%  Similarity=0.393  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchhc------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPEL------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~~------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..+.++|..|| .|++| +|+..||+.++..      .   ....++++++.+|.|++|.|+|+||+.++..+
T Consensus         5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l   82 (93)
T cd05026           5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL   82 (93)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            3456678999999999 78998 5999999996522      1   12358999999999999999999999998765

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>KOG0038|consensus

Probab=98.43  E-value=5.3e-07  Score=76.20  Aligned_cols=113  Identities=19%  Similarity=0.311  Sum_probs=82.4

Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCcc
Q psy4132         179 LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALS  258 (473)
Q Consensus       179 ~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is  258 (473)
                      ..++...|-+|-.+|-..  .+-..     +..||+|.++|++|+.+++-   ........-+..-+|+.+|-|++++|.
T Consensus        57 p~e~i~kMPELkenpfk~--ri~e~-----FSeDG~GnlsfddFlDmfSV---~sE~APrdlK~~YAFkIYDfd~D~~i~  126 (189)
T KOG0038|consen   57 PFELIEKMPELKENPFKR--RICEV-----FSEDGRGNLSFDDFLDMFSV---FSEMAPRDLKAKYAFKIYDFDGDEFIG  126 (189)
T ss_pred             cHHHHhhChhhhcChHHH--HHHHH-----hccCCCCcccHHHHHHHHHH---HHhhChHHhhhhheeEEeecCCCCccc
Confidence            345555666677777655  33333     34589999999999998871   112234445677799999999999999


Q ss_pred             HHHHhcc-hhcc---CCH-----HHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         259 IDEFMSL-PELQ---QNP-----LVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       259 ~~el~~l-~~~~---~~~-----~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+|... ..+.   .++     .+++++.+.|.|+||+++|.||-+++.+.
T Consensus       127 ~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra  178 (189)
T KOG0038|consen  127 HDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA  178 (189)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence            9999883 2222   111     26889999999999999999999988654

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=98.43  E-value=5.3e-07  Score=71.96  Aligned_cols=66  Identities=24%  Similarity=0.394  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchhc------cC--C-HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPEL------QQ--N-PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~~------~~--~-~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..++++|+.|| ++++| +|+..||+.++..      +.  . ..++++++.+|.|++|.|+|+||+.++...
T Consensus         4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~   80 (88)
T cd05027           4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV   80 (88)
T ss_pred             HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            345678999999998 79999 5999999996443      32  2 348999999999999999999999988654

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1

Probab=98.39  E-value=7.8e-07  Score=71.77  Aligned_cols=66  Identities=27%  Similarity=0.422  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHhhC-CCCCCC-ccHHHHhcchh--cc-------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNSGA-LSIDEFMSLPE--LQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~G~-Is~~el~~l~~--~~-------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.-.+.++++|+.|| .+++|+ |+..||+.++.  ++       ....++.+++.+|.+++|.|+|++|+.++..+
T Consensus         5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~   81 (92)
T cd05025           5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (92)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            445678999999997 999995 99999999753  22       23458999999999999999999999988765

S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=98.34  E-value=1.2e-06  Score=73.47  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      .....+..+|..+|.|++|+|+.+||..+........+..++..+|.|+||.|+++||+..+
T Consensus        45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl  106 (116)
T cd00252          45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF  106 (116)
T ss_pred             HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence            45678999999999999999999999987622234457899999999999999999999988

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=98.33  E-value=1.2e-06  Score=70.04  Aligned_cols=67  Identities=25%  Similarity=0.420  Sum_probs=55.4

Q ss_pred             chHHHHHHHHHHHh-hCCCCCC-CccHHHHhcchhcc---------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRK-LDLDNSG-ALSIDEFMSLPELQ---------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~-~D~d~~G-~Is~~el~~l~~~~---------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..|..+|+. +|.+++| +|+.+||+.++...         ....++.+++.+|.|+||.|+|+||+.++..+
T Consensus         4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l   81 (89)
T cd05023           4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL   81 (89)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence            34567789999999 8898976 99999999964321         13468999999999999999999999988655

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>PLN02964 phosphatidylserine decarboxylase

Probab=98.33  E-value=9.2e-07  Score=94.35  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhhhh---hhhHHHHHHHHh-hhhhhhhh-hhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         163 KETSSNINNAFKDLNQ---LMSMAKEMVEIS-KNISNKII-NRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~---~~e~~~~l~~lg-~~~~~~~~-~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      +.+..+++++|+.+|.   -..+...++++| ..++.... .+..++..  +|.|++|.|+|+||+.++...    ....
T Consensus       139 ~kqi~elkeaF~lfD~dgdG~iLg~ilrslG~~~pte~e~~fi~~mf~~--~D~DgdG~IdfdEFl~lL~~l----g~~~  212 (644)
T PLN02964        139 TQEPESACESFDLLDPSSSNKVVGSIFVSCSIEDPVETERSFARRILAI--VDYDEDGQLSFSEFSDLIKAF----GNLV  212 (644)
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCHHHHHHHhCCCCCCHHHHHHHHHHHHH--hCCCCCCeEcHHHHHHHHHHh----ccCC
Confidence            3345789999999999   234788899999 57777611 14555553  899999999999999988721    1234


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPE  267 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~  267 (473)
                      ..+++.++|+.+|+|++|+|+.+||..++.
T Consensus       213 seEEL~eaFk~fDkDgdG~Is~dEL~~vL~  242 (644)
T PLN02964        213 AANKKEELFKAADLNGDGVVTIDELAALLA  242 (644)
T ss_pred             CHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            567899999999999999999999999643

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10

Probab=98.29  E-value=1.7e-06  Score=70.04  Aligned_cols=65  Identities=26%  Similarity=0.424  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhCC-CC-CCCccHHHHhcchhc------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDL-DN-SGALSIDEFMSLPEL------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~-d~-~G~Is~~el~~l~~~------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....++.+|..||. |+ +|+|+..||+.++..      +   ....++.+++.+|.+++|.|+|+||+.++...
T Consensus         5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~   80 (94)
T cd05031           5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL   80 (94)
T ss_pred             HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            446689999999997 97 799999999996432      2   23458999999999999999999999988654

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>smart00027 EH Eps15 homology domain

Probab=98.29  E-value=2.3e-06  Score=69.59  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=57.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+...++.+|+.+|.+++|.|+.+|++.++ ..+. ...++.++..+|.+++|.|+|+||+.++...
T Consensus         5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~   73 (96)
T smart00027        5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI   73 (96)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            45678899999999999999999999999963 3333 3458899999999999999999999988755

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif

Probab=98.28  E-value=1.8e-06  Score=69.04  Aligned_cols=66  Identities=26%  Similarity=0.423  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHhhCC--CCCCCccHHHHhcchh--cc-------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDL--DNSGALSIDEFMSLPE--LQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~--d~~G~Is~~el~~l~~--~~-------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.+++.++.+|..+|.  +++|.|+.+||..+..  .+       ....++.++..+|.+++|.|+|++|+.++...
T Consensus         4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~   80 (88)
T cd00213           4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL   80 (88)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence            4577889999999999  8999999999999653  22       13568999999999999999999999988654

Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=98.24  E-value=2e-06  Score=68.65  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             HHHHHHhHHhcC-CCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCH-HHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYDI-DNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSP-EDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~-d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~-~ei~~~~~~~D~~~dg~  386 (473)
                      ..+..+|+.||+ +++|.+...   ++..+|...+                    | +.++. +++.++++.+|.|+||.
T Consensus         8 ~~l~~~F~~fd~~~~~g~i~~~---ELk~ll~~el--------------------g-~~ls~~~~v~~mi~~~D~d~DG~   63 (89)
T cd05022           8 ETLVSNFHKASVKGGKESLTAS---EFQELLTQQL--------------------P-HLLKDVEGLEEKMKNLDVNQDSK   63 (89)
T ss_pred             HHHHHHHHHHhCCCCCCeECHH---HHHHHHHHHh--------------------h-hhccCHHHHHHHHHHhCCCCCCC
Confidence            457889999999 888655554   3443333211                    1 13666 88999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||...+.
T Consensus        64 I~F~EF~~l~~   74 (89)
T cd05022          64 LSFEEFWELIG   74 (89)
T ss_pred             CcHHHHHHHHH
Confidence            99999986554

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=98.23  E-value=2.5e-06  Score=68.14  Aligned_cols=67  Identities=19%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHhhCC-CC-CCCccHHHHhcchh----ccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDL-DN-SGALSIDEFMSLPE----LQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~-d~-~G~Is~~el~~l~~----~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..+..+|..+|. ++ +|+|+.+||+.++.    ++.   ...++++++.+|.|++|.|+|+||+.++..+
T Consensus         5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l   80 (88)
T cd05029           5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence            35567788999999998 77 89999999999753    342   3458999999999999999999999988655

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=98.22  E-value=3.1e-06  Score=63.58  Aligned_cols=65  Identities=25%  Similarity=0.133  Sum_probs=44.4

Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      +++.+|+.||.|++|.+...   ++..++.......    +.              ....+.+..+|+.+|+|+||.|++
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~---el~~~~~~~~~~~----~~--------------~~~~~~~~~~~~~~D~d~dG~i~~   59 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKE---ELRRALKHLGRDM----SD--------------EESDEMIDQIFREFDTDGDGRISF   59 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHH---HHHHHHHHTTSHS----TH--------------HHHHHHHHHHHHHHTTTSSSSEEH
T ss_pred             CHHHHHHHHcCCccCCCCHH---HHHHHHHHhcccc----cH--------------HHHHHHHHHHHHHhCCCCcCCCcH
Confidence            47889999999999666664   4444444322110    00              122345667799999999999999


Q ss_pred             Hhhhcc
Q psy4132         390 KTYSSG  395 (473)
Q Consensus       390 ~EF~~~  395 (473)
                      +||..+
T Consensus        60 ~Ef~~~   65 (66)
T PF13499_consen   60 DEFLNF   65 (66)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            999864

...

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=98.21  E-value=2.8e-06  Score=63.79  Aligned_cols=59  Identities=27%  Similarity=0.447  Sum_probs=50.1

Q ss_pred             HHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         243 GKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       243 ~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +++|+.+|.+++|.|+.+|++.++ ..+ ....++.++..+|.+++|.|+|+||+.++...
T Consensus         2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~   62 (67)
T cd00052           2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI   62 (67)
T ss_pred             hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            578999999999999999999853 333 23458899999999999999999999988654

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>KOG2562|consensus

Probab=98.14  E-value=2.8e-05  Score=77.96  Aligned_cols=168  Identities=20%  Similarity=0.263  Sum_probs=110.9

Q ss_pred             ccCCCCCceeHHHHHHH-----Hcc--------ccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHH
Q psy4132         209 SNKDRDGKINFQEFCSI-----VGN--------TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLV  274 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~-----~~~--------~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~  274 (473)
                      +++.+.|+|+..+.+..     |..        +...-.....-..+.-.|..+|+|.+|.|+.++|+... .......+
T Consensus       234 ~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~iv  313 (493)
T KOG2562|consen  234 LNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIV  313 (493)
T ss_pred             eCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHH
Confidence            58999999999886542     210        00000111222233344888999999999999999953 33446678


Q ss_pred             HHHHHH----hcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccc
Q psy4132         275 QRVIDI----FDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTML  350 (473)
Q Consensus       275 ~~l~~~----~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~  350 (473)
                      +++|..    .-.-.+|+++|++|+.++... ........+.--|+..|.+++|-+...+++-+.+.....+...     
T Consensus       314 dRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~-----  387 (493)
T KOG2562|consen  314 DRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECM-----  387 (493)
T ss_pred             HHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhc-----
Confidence            999993    334578999999999998877 4445567788899999999997777766655555544433322     


Q ss_pred             hhHHHHHHHhhhCCCCCCHHHHH-HHHHHhccCCCCCeeHHhhhc
Q psy4132         351 LTDAYCRINRARGLELLSPEDLL-NSCLALDKLPDSPIYLKTYSS  394 (473)
Q Consensus       351 l~d~~~~~~~~~g~~~ls~~ei~-~~~~~~D~~~dg~Is~~EF~~  394 (473)
                                  |.+.++-+++. +++..+-....++|++++|+.
T Consensus       388 ------------~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~  420 (493)
T KOG2562|consen  388 ------------GQEALPFEDALCQIRDMVKPEDENKITLQDLKG  420 (493)
T ss_pred             ------------CCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence                        22334444443 344444444488999999974

>KOG4251|consensus

Probab=98.14  E-value=1.5e-05  Score=73.32  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhh---hhhHHHHHHHHhhhhh-hhhhhhhc--ccccccccCCCCCceeHHHHHHHHc
Q psy4132         168 NINNAFKDLNQ---LMSMAKEMVEISKNIS-NKIINRQG--EITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       168 ~l~eaF~~lD~---~~e~~~~l~~lg~~~~-~~~~~~~~--~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      .|..+|+..|.   -.-.+++|..+...-+ +-+.+...  .+....+|+|+||.|+|+||..-+.
T Consensus       102 klmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl  167 (362)
T KOG4251|consen  102 KLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL  167 (362)
T ss_pred             HHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence            47778887776   3444566654443333 32222211  2334456888888888888876443

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=98.02  E-value=1.3e-05  Score=64.76  Aligned_cols=71  Identities=21%  Similarity=0.159  Sum_probs=48.2

Q ss_pred             HHHHHHhHHhc-CCCCch-hhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDNDDD-YYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg~-~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+..+|..|| +|++|+ ++.   .||..++......               ...+  ..++.++.++++.+|.|+||.
T Consensus        10 ~~~~~~F~~~dd~dgdg~~Is~---~EL~~ll~~~~~~---------------~~~~--~~~~~~v~~i~~elD~n~dG~   69 (93)
T cd05026          10 DTLIRIFHNYSGKEGDRYKLSK---GELKELLQRELTD---------------FLSS--QKDPMLVDKIMNDLDSNKDNE   69 (93)
T ss_pred             HHHHHHHHHHHccCCCCCEECH---HHHHHHHHHHhHH---------------hccc--ccCHHHHHHHHHHhCCCCCCC
Confidence            45677899998 678864 555   4444444331110               0011  247788999999999999999


Q ss_pred             eeHHhhhccceee
Q psy4132         387 IYLKTYSSGVKVL  399 (473)
Q Consensus       387 Is~~EF~~~~~vl  399 (473)
                      |+++||+..+..+
T Consensus        70 Idf~EF~~l~~~l   82 (93)
T cd05026          70 VDFNEFVVLVAAL   82 (93)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999998766533

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=98.00  E-value=1.8e-05  Score=63.10  Aligned_cols=69  Identities=19%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             HHHHHHhHHhc-CCCCch-hhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDNDDD-YYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg~-~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..++.+|+.|| +|++|. +..   .++..+|..-++.                ..| ...+++++.++++.+|.|+||.
T Consensus         8 ~~l~~aF~~fD~~dgdG~~I~~---~eL~~ll~~~~~~----------------~lg-~~~~~~~v~~~i~~~D~n~dG~   67 (88)
T cd05027           8 VALIDVFHQYSGREGDKHKLKK---SELKELINNELSH----------------FLE-EIKEQEVVDKVMETLDSDGDGE   67 (88)
T ss_pred             HHHHHHHHHhcccCCCcCEECH---HHHHHHHHHHhHH----------------Hhc-CCCCHHHHHHHHHHhCCCCCCc
Confidence            45789999998 788863 555   4555444431110                112 1368889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||...+.
T Consensus        68 v~f~eF~~li~   78 (88)
T cd05027          68 CDFQEFMAFVA   78 (88)
T ss_pred             CcHHHHHHHHH
Confidence            99999986554

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>KOG2643|consensus

Probab=97.99  E-value=1.8e-05  Score=78.72  Aligned_cols=181  Identities=17%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             CCCCCCCccHHHHhcchhccCCHH--HHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc--------------HHHHH-
Q psy4132         250 DLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR--------------ESKLK-  312 (473)
Q Consensus       250 D~d~~G~Is~~el~~l~~~~~~~~--~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~--------------~e~l~-  312 (473)
                      |.+.+|.|+..|..=+..+...+.  ..--|+.||.|+||.|+.+||...+.........              .-.+. 
T Consensus       209 ~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns  288 (489)
T KOG2643|consen  209 KLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS  288 (489)
T ss_pred             EcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence            334556666666555443332222  2334566666666666666665555433221110              00011 


Q ss_pred             -HHhHHhcCCCCchhhHhhHHHHHHHHhchh---------hcCCCccchhHHHHHHHhhhCCCCCCHH-HHHHHHHHhcc
Q psy4132         313 -FAFRIYDIDNDDDYYQALGNELIAALIEPL---------TSAGGTMLLTDAYCRINRARGLELLSPE-DLLNSCLALDK  381 (473)
Q Consensus       313 -~~F~~~D~d~dg~~~~~e~~el~~~L~~~~---------~~~~g~i~l~d~~~~~~~~~g~~~ls~~-ei~~~~~~~D~  381 (473)
                       ..-..|-+++++.++.++|.++++-|..-+         ....|.|+..|+-..+-...+....... .+.++-+.++.
T Consensus       289 aL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~  368 (489)
T KOG2643|consen  289 ALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKD  368 (489)
T ss_pred             hHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccC
Confidence             112234555665666655555555444311         1122556666655555555442111111 12233445554


Q ss_pred             CCCCCeeHHhhhccceeeeecccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCc
Q psy4132         382 LPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVS  435 (473)
Q Consensus       382 ~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s  435 (473)
                      + +-.||++||.+.++.+....  +-++  .+.=+...+..|+..+|++..+.-
T Consensus       369 ~-~~gISl~Ef~~Ff~Fl~~l~--dfd~--Al~fy~~Ag~~i~~~~f~raa~~v  417 (489)
T KOG2643|consen  369 D-GKGISLQEFKAFFRFLNNLN--DFDI--ALRFYHMAGASIDEKTFQRAAKVV  417 (489)
T ss_pred             C-CCCcCHHHHHHHHHHHhhhh--HHHH--HHHHHHHcCCCCCHHHHHHHHHHh
Confidence            4 44566666666666554332  2121  111122234556666666665443

>KOG4251|consensus

Probab=97.89  E-value=0.0001  Score=67.83  Aligned_cols=189  Identities=15%  Similarity=0.134  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhc-chhccCCH------HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP------LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~~~~------~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ...+.+..+|.+.|.+.+|+|+..|+++ ++......      ..+-.|+..|+|+||.|+|+||.--+.....  -.+.
T Consensus        98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskg--hsek  175 (362)
T KOG4251|consen   98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKG--HSEK  175 (362)
T ss_pred             HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcC--cchH
Confidence            4457899999999999999999999998 43322111      2345688899999999999999765544321  1222


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcC-----CCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSA-----GGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~-----~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      ....+.+.-|.    ....+|-+++.+.++......     +-.++-.++...+.....- ..--.-+.++...+|+|+|
T Consensus       176 evadairlnee----lkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSr-gmLrfmVkeivrdlDqdgD  250 (362)
T KOG4251|consen  176 EVADAIRLNEE----LKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSR-GMLRFMVKEIVRDLDQDGD  250 (362)
T ss_pred             HHHHHhhccCc----ccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhh-hhHHHHHHHHHHHhccCCC
Confidence            22222222111    112222244444443322111     1123334444443332110 0111224567889999999


Q ss_pred             CCeeHHhhhccce-eeeeccc---CcHHHHHHH---HHHHhh--CCCCCHHHHHHhh
Q psy4132         385 SPIYLKTYSSGVK-VLQLKSC---EDASFVEKT---YEIVSQ--NVFVTVEQFSRLA  432 (473)
Q Consensus       385 g~Is~~EF~~~~~-vl~~~~~---~~~~~~~~~---~~~~~~--~~~ls~~e~a~~~  432 (473)
                      ..+|..||+++.- .+...+.   ++-.+-.+.   -++++.  .|-+|++|+....
T Consensus       251 kqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~  307 (362)
T KOG4251|consen  251 KQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV  307 (362)
T ss_pred             eeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence            9999999998764 2222222   222222222   344444  3678888877654

>KOG4666|consensus

Probab=97.88  E-value=3.7e-05  Score=73.60  Aligned_cols=152  Identities=15%  Similarity=0.199  Sum_probs=102.1

Q ss_pred             eHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy4132         218 NFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG  297 (473)
Q Consensus       218 ~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~  297 (473)
                      ++-||.....  .+......-+..+...-..--..+.+.|...||..-...........+|..||.+++|.++|.|.+..
T Consensus       207 ~l~eF~~~~r--~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~  284 (412)
T KOG4666|consen  207 SLPEFVAKRR--VLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKT  284 (412)
T ss_pred             chHHHHHHHh--ccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhh
Confidence            4667766544  12222222222332222222334556777777766444444455778999999999999999999999


Q ss_pred             HhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy4132         298 VSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCL  377 (473)
Q Consensus       298 l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~  377 (473)
                      ++.++......+.++-+|+.|+.+.| |++.+  +++.                    +.+..+.|++   .-++-.+|.
T Consensus       285 lavlc~p~~t~~iiq~afk~f~v~eD-g~~ge--~~ls--------------------~ilq~~lgv~---~l~v~~lf~  338 (412)
T KOG4666|consen  285 LAVLCGPPVTPVIIQYAFKRFSVAED-GISGE--HILS--------------------LILQVVLGVE---VLRVPVLFP  338 (412)
T ss_pred             heeeeCCCCcHHHHHHHHHhcccccc-cccch--HHHH--------------------HHHHHhcCcc---eeeccccch
Confidence            99999999999999999999999988 55553  3333                    3334444532   223445677


Q ss_pred             HhccCCCCCeeHHhhhccce
Q psy4132         378 ALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       378 ~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .++...||+|++.+|.+...
T Consensus       339 ~i~q~d~~ki~~~~f~~fa~  358 (412)
T KOG4666|consen  339 SIEQKDDPKIYASNFRKFAA  358 (412)
T ss_pred             hhhcccCcceeHHHHHHHHH
Confidence            88888899999999987553

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1

Probab=97.85  E-value=4.4e-05  Score=61.51  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             HHHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      .+.++++|+.|| +|++| .+...   ++..+|...+..                ..+ ...+++++.++++.+|.|++|
T Consensus         8 ~~~l~~~F~~fDd~dg~G~~Is~~---El~~~l~~~lg~----------------~~~-~~~s~~~v~~i~~~~D~d~~G   67 (92)
T cd05025           8 METLINVFHAHSGKEGDKYKLSKK---ELKDLLQTELSD----------------FLD-AQKDADAVDKIMKELDENGDG   67 (92)
T ss_pred             HHHHHHHHHHHhcccCCCCeECHH---HHHHHHHHHHHH----------------Hcc-CCCCHHHHHHHHHHHCCCCCC
Confidence            356888999996 98886 35654   444444321100                001 025788999999999999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|++++|+..+.
T Consensus        68 ~I~f~eF~~l~~   79 (92)
T cd05025          68 EVDFQEFVVLVA   79 (92)
T ss_pred             cCcHHHHHHHHH
Confidence            999999986554

S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.

>KOG0041|consensus

Probab=97.83  E-value=4.3e-05  Score=68.31  Aligned_cols=66  Identities=24%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCH----HHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP----LVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~----~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..++..+...|+.+|.+.||+|+..||+.++.....|    -+..|+..+|.|.||+|+|.||+-++...
T Consensus        95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka  164 (244)
T KOG0041|consen   95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA  164 (244)
T ss_pred             HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            4688899999999999999999999999986554333    37899999999999999999998877654

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=97.81  E-value=3.7e-05  Score=55.18  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=42.8

Q ss_pred             CCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         346 GGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       346 ~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      +|.|+..++..++ +..|...++++++..+|..+|.|++|.|+++||+..+
T Consensus         2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~   51 (54)
T PF13833_consen    2 DGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM   51 (54)
T ss_dssp             SSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred             cCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence            4788888988888 5556434999999999999999999999999998765

...

>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12

Probab=97.76  E-value=6.1e-05  Score=60.15  Aligned_cols=66  Identities=20%  Similarity=0.383  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHhhCCC--CCCCccHHHHhcchh-c-c---C----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLD--NSGALSIDEFMSLPE-L-Q---Q----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d--~~G~Is~~el~~l~~-~-~---~----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+...|+.++..  .+|+|+.+||+.++. . +   .    ...++.++..+|.+++|.|+|+||+.++..+
T Consensus         4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~   80 (88)
T cd05030           4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV   80 (88)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence            44567788999999966  489999999999753 2 2   1    3458999999999999999999999988654

Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=97.75  E-value=5.4e-05  Score=56.66  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.+|.|++|.+..                       .++...+... |   ++.+++.++++.+|.+++|.|+++|
T Consensus         2 ~~~F~~~D~~~~G~i~~-----------------------~el~~~l~~~-g---~~~~~~~~i~~~~d~~~~g~i~~~e   54 (67)
T cd00052           2 DQIFRSLDPDGDGLISG-----------------------DEARPFLGKS-G---LPRSVLAQIWDLADTDKDGKLDKEE   54 (67)
T ss_pred             hHHHHHhCCCCCCcCcH-----------------------HHHHHHHHHc-C---CCHHHHHHHHHHhcCCCCCcCCHHH
Confidence            46899999988854444                       3333333322 3   5788899999999999999999999


Q ss_pred             hhccceee
Q psy4132         392 YSSGVKVL  399 (473)
Q Consensus       392 F~~~~~vl  399 (473)
                      |...+.++
T Consensus        55 f~~~~~~~   62 (67)
T cd00052          55 FAIAMHLI   62 (67)
T ss_pred             HHHHHHHH
Confidence            98877643

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=97.69  E-value=0.00013  Score=58.14  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             HHHHHhHHhcC-CCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhh--hCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         310 KLKFAFRIYDI-DNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRA--RGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       310 ~l~~~F~~~D~-d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~--~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .+..+|..||. |++.                      |.|+..|+...+.+.  .| +.++++++.++++.+|.|++|.
T Consensus        11 ~~i~~F~~y~~~~~~~----------------------g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~   67 (88)
T cd05029          11 LLVAIFHKYSGREGDK----------------------NTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQE   67 (88)
T ss_pred             HHHHHHHHHHccCCCC----------------------CEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCC
Confidence            46678999987 5532                      333334444444321  23 3489999999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||...+.
T Consensus        68 Idf~EFv~lm~   78 (88)
T cd05029          68 VNFQEYVTFLG   78 (88)
T ss_pred             CcHHHHHHHHH
Confidence            99999976543

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

Probab=97.67  E-value=9.7e-05  Score=53.52  Aligned_cols=57  Identities=30%  Similarity=0.536  Sum_probs=45.6

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchhc----cCCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPEL----QQNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~~----~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      +..+|..+|.+++|.|+.+|+..+...    .....+..++..+|.+++|.|++++|+.++
T Consensus         2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~   62 (63)
T cd00051           2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM   62 (63)
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence            567899999999999999999885432    223346789999999999999999998765

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.

>smart00027 EH Eps15 homology domain

Probab=97.66  E-value=9.2e-05  Score=60.14  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ...++.+|+.||.|++|.+..                       .++..++.. .|   ++++++.+++..+|.+++|.|
T Consensus         9 ~~~l~~~F~~~D~d~~G~Is~-----------------------~el~~~l~~-~~---~~~~ev~~i~~~~d~~~~g~I   61 (96)
T smart00027        9 KAKYEQIFRSLDKNQDGTVTG-----------------------AQAKPILLK-SG---LPQTLLAKIWNLADIDNDGEL   61 (96)
T ss_pred             HHHHHHHHHHhCCCCCCeEeH-----------------------HHHHHHHHH-cC---CCHHHHHHHHHHhcCCCCCCc
Confidence            356888999999999855544                       333333322 23   778899999999999999999


Q ss_pred             eHHhhhccceee
Q psy4132         388 YLKTYSSGVKVL  399 (473)
Q Consensus       388 s~~EF~~~~~vl  399 (473)
                      +++||+..+..+
T Consensus        62 ~~~eF~~~~~~~   73 (96)
T smart00027       62 DKDEFALAMHLI   73 (96)
T ss_pred             CHHHHHHHHHHH
Confidence            999998766533

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=97.63  E-value=0.00011  Score=58.66  Aligned_cols=70  Identities=17%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             HHHHHHhHH-hcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRI-YDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~-~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ..+..+|+. +|+|++++.++.  .|+..++...+...                .+ ...++.++.++++.+|.|+||.|
T Consensus         9 ~~l~~~F~~y~~~dg~~~~Ls~--~Elk~ll~~e~~~~----------------~~-~~~~~~~~~~ll~~~D~d~DG~I   69 (89)
T cd05023           9 ESLIAVFQKYAGKDGDSYQLSK--TEFLSFMNTELASF----------------TK-NQKDPGVLDRMMKKLDLNSDGQL   69 (89)
T ss_pred             HHHHHHHHHHhccCCCcCeECH--HHHHHHHHHhhhHh----------------hc-CCCCHHHHHHHHHHcCCCCCCcC
Confidence            456778888 667777533333  45555554322110                00 13678899999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||+..+.
T Consensus        70 ~f~EF~~l~~   79 (89)
T cd05023          70 DFQEFLNLIG   79 (89)
T ss_pred             cHHHHHHHHH
Confidence            9999986554

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=97.59  E-value=7.2e-05  Score=53.66  Aligned_cols=46  Identities=28%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             CCCccHHHHhcchhc-c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         254 SGALSIDEFMSLPEL-Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       254 ~G~Is~~el~~l~~~-~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      +|.|+.++|+.++.. +    ....++.++..+|.+++|.|+|+||+.++.
T Consensus         2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~   52 (54)
T PF13833_consen    2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ   52 (54)
T ss_dssp             SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred             cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence            455555555553211 1    123578889999999999999999988775

...

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10

Probab=97.58  E-value=0.00019  Score=58.04  Aligned_cols=69  Identities=19%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             HHHHHHhHHhcC-CC-CchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYDI-DN-DDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~-d~-dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..++.+|..||. |+ +|.+..   .++..+|......                ..| ..++.+++..+++.+|.+++|.
T Consensus         8 ~~l~~~F~~~D~~dg~dG~Is~---~El~~~l~~~~g~----------------~lg-~~~s~~ei~~~~~~~D~~~dg~   67 (94)
T cd05031           8 ESLILTFHRYAGKDGDKNTLSR---KELKKLMEKELSE----------------FLK-NQKDPMAVDKIMKDLDQNRDGK   67 (94)
T ss_pred             HHHHHHHHHHhccCCCCCeECH---HHHHHHHHHHhHH----------------Hhh-ccccHHHHHHHHHHhCCCCCCc
Confidence            567889999996 86 555555   3444443321100                011 1367889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...+.
T Consensus        68 I~f~eF~~l~~   78 (94)
T cd05031          68 VNFEEFVSLVA   78 (94)
T ss_pred             CcHHHHHHHHH
Confidence            99999986654

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=97.57  E-value=0.00015  Score=60.83  Aligned_cols=60  Identities=13%  Similarity=0.036  Sum_probs=43.8

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ...+..+|..+|.|+||.++..|+..+.  +                           ......+..+|+.+|.|+||.|
T Consensus        47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---------------------------~~~e~~~~~f~~~~D~n~Dg~I   97 (116)
T cd00252          47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L---------------------------DPNEHCIKPFFESCDLDKDGSI   97 (116)
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---------------------------cchHHHHHHHHHHHCCCCCCCC
Confidence            3678889999999998666664333222  0                           0223446779999999999999


Q ss_pred             eHHhhhccc
Q psy4132         388 YLKTYSSGV  396 (473)
Q Consensus       388 s~~EF~~~~  396 (473)
                      |++||...+
T Consensus        98 S~~Ef~~cl  106 (116)
T cd00252          98 SLDEWCYCF  106 (116)
T ss_pred             CHHHHHHHH
Confidence            999998877

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10

Probab=97.56  E-value=0.00026  Score=56.30  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--------c-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--------Q-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--------~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+...|..+.. ++++++..||+.++..        . ....++.+++.+|.|+||.|+|.||+.++..+
T Consensus         4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l   77 (91)
T cd05024           4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL   77 (91)
T ss_pred             HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            3456678889999984 4679999999996321        1 22358999999999999999999999988655

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=97.55  E-value=0.0001  Score=45.59  Aligned_cols=26  Identities=31%  Similarity=0.677  Sum_probs=16.7

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         274 VQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       274 ~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ++.+|+.+|.|+||.|+++||+.+|.
T Consensus         2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~   27 (29)
T PF00036_consen    2 LKEAFREFDKDGDGKIDFEEFKEMMK   27 (29)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence            34566666666666666666666654

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=97.53  E-value=5.7e-05  Score=46.75  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=24.4

Q ss_pred             HHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         371 DLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       371 ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      |+.++|+.+|+|+||.|+++||..+++
T Consensus         1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~   27 (29)
T PF00036_consen    1 ELKEAFREFDKDGDGKIDFEEFKEMMK   27 (29)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence            578899999999999999999988764

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PF14658 EF-hand_9: EF-hand domain

Probab=97.45  E-value=0.00018  Score=53.34  Aligned_cols=57  Identities=18%  Similarity=0.450  Sum_probs=47.9

Q ss_pred             HHHHhhCCCCCCCccHHHHhcch-hccC----CHHHHHHHHHhcCCCC-CcccHHHHHHHHhh
Q psy4132         244 KRFRKLDLDNSGALSIDEFMSLP-ELQQ----NPLVQRVIDIFDEDRN-GEVDFKEFIQGVSQ  300 (473)
Q Consensus       244 ~~F~~~D~d~~G~Is~~el~~l~-~~~~----~~~~~~l~~~~D~d~d-G~I~~~EF~~~l~~  300 (473)
                      .+|..||.++.|.|...++..++ ..+.    +..++.+.+.+|+++. |.|+++.|+..|+.
T Consensus         2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~   64 (66)
T PF14658_consen    2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD   64 (66)
T ss_pred             cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence            36999999999999999999953 3333    2358999999999988 99999999999865

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif

Probab=97.43  E-value=0.00037  Score=55.51  Aligned_cols=69  Identities=17%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             HHHHHHhHHhcC--CCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYDI--DNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~--d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|..||.  |++|.+..   .++..++...+...                .+ ...+.+++..++..+|.+++|.
T Consensus         8 ~~l~~~F~~~D~~~~~~G~Is~---~el~~~l~~~~g~~----------------~~-~~~~~~ei~~i~~~~d~~~~g~   67 (88)
T cd00213           8 ETIIDVFHKYSGKEGDKDTLSK---KELKELLETELPNF----------------LK-NQKDPEAVDKIMKDLDVNKDGK   67 (88)
T ss_pred             HHHHHHHHHHhhccCCCCcCcH---HHHHHHHHHHhhhh----------------cc-CCCCHHHHHHHHHHhccCCCCc
Confidence            567889999999  78855555   34443333211000                00 1246888999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |++++|+..+.
T Consensus        68 I~f~eF~~~~~   78 (88)
T cd00213          68 VDFQEFLVLIG   78 (88)
T ss_pred             CcHHHHHHHHH
Confidence            99999987665

Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

Probab=97.31  E-value=0.00096  Score=48.10  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|..+|.+++|.+..                       .++...+....-  ..+.+.+..++..+|.+++|.|+++
T Consensus         2 ~~~~f~~~d~~~~g~l~~-----------------------~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~   56 (63)
T cd00051           2 LREAFRLFDKDGDGTISA-----------------------DELKAALKSLGE--GLSEEEIDEMIREVDKDGDGKIDFE   56 (63)
T ss_pred             HHHHHHHhCCCCCCcCcH-----------------------HHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCeEeHH
Confidence            467789999888855544                       333333322211  3677788899999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      +|...+
T Consensus        57 ef~~~~   62 (63)
T cd00051          57 EFLELM   62 (63)
T ss_pred             HHHHHh
Confidence            997643

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.

>KOG2760|consensus

Probab=97.21  E-value=0.00036  Score=68.79  Aligned_cols=73  Identities=22%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             ccccc------CCCCCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee-cCccccccchhhhhHHHhhhhccc
Q psy4132           3 RFEYC------SFELSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ-KDITLCLALSYIQNAVEEAKSMFN   74 (473)
Q Consensus         3 ~~~~~------~~~l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~-~~~~~~l~l~~v~~~~~~~~~~~~   74 (473)
                      +|.|+      +|.|.|+|..++.++.|++|+|..+ ...++|+++||+.||+|. +..-. +.|++...+-..+ ++| 
T Consensus         1 ~~fy~ett~s~~~~~~~~e~~~~~~q~~~~~fg~~~~~~~~ne~l~lt~~~I~~~D~~~k~-~~~~dg~~vltt~-Rli-   77 (432)
T KOG2760|consen    1 YWFYVETTSSGQPLLSPGEEDIFIDQSVMLRFGWSKILRSQNETLLLTSQRIIIYDGDKKT-TKFDDGTLVLTTH-RLI-   77 (432)
T ss_pred             CceEEEecCCCCCCCCCcccceeeecccchhcccchhhhccCceEEEeecceEEecCCCcc-ccccchhhhhhhc-eee-
Confidence            47776      8889999999999999999999999 667899999999999999 22211 8888888887777 453 


Q ss_pred             ccCcc
Q psy4132          75 LTAGR   79 (473)
Q Consensus        75 ~~~s~   79 (473)
                       .+||
T Consensus        78 -w~~p   81 (432)
T KOG2760|consen   78 -WRSP   81 (432)
T ss_pred             -ecCc
Confidence             5665

>KOG0040|consensus

Probab=97.21  E-value=0.0022  Score=72.29  Aligned_cols=140  Identities=12%  Similarity=0.250  Sum_probs=96.0

Q ss_pred             HHHHHHHHhHH---------HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhh-----hhhcccccccccCC
Q psy4132         154 IERNIVEKQKE---------TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKII-----NRQGEITEDDSNKD  212 (473)
Q Consensus       154 i~r~~~~~~~~---------~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~-----~~~~~~~~~~~D~d  212 (473)
                      ++++++|+++.         +-.++.-+|+.||+       ......+|+++|.+++....     +.+..+  .-+|++
T Consensus      2231 MqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l--d~vDP~ 2308 (2399)
T KOG0040|consen 2231 MQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL--DLVDPN 2308 (2399)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH--HhcCCC
Confidence            45556666543         56688899999999       67888999999999854311     112222  237999


Q ss_pred             CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-ccCCHHHHHHHHHhcCC----CCC
Q psy4132         213 RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQNPLVQRVIDIFDED----RNG  287 (473)
Q Consensus       213 ~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~~~~~~~~l~~~~D~d----~dG  287 (473)
                      .+|.|+..+|+++|.++...  .......+..+|+.+|. +.-||+..++..-+. -.....+..|-..+++.    -.+
T Consensus      2309 r~G~Vsl~dY~afmi~~ETe--NI~s~~eIE~AfraL~a-~~~yvtke~~~~~ltreqaefc~s~m~~~~e~~~~~s~q~ 2385 (2399)
T KOG0040|consen 2309 RDGYVSLQDYMAFMISKETE--NILSSEEIEDAFRALDA-GKPYVTKEELYQNLTREQAEFCMSKMKPYAETSSGRSDQV 2385 (2399)
T ss_pred             CcCcccHHHHHHHHHhcccc--cccchHHHHHHHHHhhc-CCccccHHHHHhcCCHHHHHHHHHHhhhhcccccCCCccc
Confidence            99999999999999854322  22334489999999999 888999999876322 11122244555555552    245


Q ss_pred             cccHHHHHHHH
Q psy4132         288 EVDFKEFIQGV  298 (473)
Q Consensus       288 ~I~~~EF~~~l  298 (473)
                      .++|.+|++.+
T Consensus      2386 ~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2386 ALDYKDFVNSL 2396 (2399)
T ss_pred             cccHHHHHHHH
Confidence            78999998765

>KOG2562|consensus

Probab=97.21  E-value=0.0019  Score=65.16  Aligned_cols=214  Identities=15%  Similarity=0.139  Sum_probs=143.6

Q ss_pred             cccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-----hc-----cCCH-----
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-----EL-----QQNP-----  272 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-----~~-----~~~~-----  272 (473)
                      .++.|..|.|+...|..++..     ........+.+.+..++..+.|++...+|+...     +.     ...+     
T Consensus       147 k~~~d~~g~it~~~Fi~~~~~-----~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~  221 (493)
T KOG2562|consen  147 KIDGDDTGHITRDKFINYWMR-----GLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQER  221 (493)
T ss_pred             hhccCcCCceeHHHHHHHHHh-----hhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHH
Confidence            468899999999999998873     234456677788999999999999998888721     11     1111     


Q ss_pred             ----HHHHHHHHhcCCCCCcccHHHHHH-----HHhhcccCCCc--------HHHHHHH---hHHhcCCCCchhhHhhHH
Q psy4132         273 ----LVQRVIDIFDEDRNGEVDFKEFIQ-----GVSQFSVKGDR--------ESKLKFA---FRIYDIDNDDDYYQALGN  332 (473)
Q Consensus       273 ----~~~~l~~~~D~d~dG~I~~~EF~~-----~l~~~~~~~~~--------~e~l~~~---F~~~D~d~dg~~~~~e~~  332 (473)
                          .+.++|-.++..+.|.|+..+...     .|..+....+.        -+....+   |..+|+|.||.+..+++.
T Consensus       222 Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~  301 (493)
T KOG2562|consen  222 YAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLK  301 (493)
T ss_pred             HHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHH
Confidence                257888888999999999988643     23332221111        1222333   788899999777775542


Q ss_pred             HHH------HHHhchh--------hcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce-
Q psy4132         333 ELI------AALIEPL--------TSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK-  397 (473)
Q Consensus       333 el~------~~L~~~~--------~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~-  397 (473)
                      ...      .++..++        ....|.|+..++...+-...+  .-+|.-++-.|+.+|.+++|.++..|...... 
T Consensus       302 ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~--k~t~~SleYwFrclDld~~G~Lt~~el~~fyee  379 (493)
T KOG2562|consen  302 RYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED--KDTPASLEYWFRCLDLDGDGILTLNELRYFYEE  379 (493)
T ss_pred             HHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc--CCCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence            111      1111111        234578999999888887776  56777788889999999999999988543222 


Q ss_pred             --------eeeecccCcHHHHHHHHHHHhh--CCCCCHHHHHH
Q psy4132         398 --------VLQLKSCEDASFVEKTYEIVSQ--NVFVTVEQFSR  430 (473)
Q Consensus       398 --------vl~~~~~~~~~~~~~~~~~~~~--~~~ls~~e~a~  430 (473)
                              ......  =+.++.++..++..  .+.+|.+++-.
T Consensus       380 q~~rm~~~~~e~l~--fed~l~qi~DMvkP~~~~kItLqDlk~  420 (493)
T KOG2562|consen  380 QLQRMECMGQEALP--FEDALCQIRDMVKPEDENKITLQDLKG  420 (493)
T ss_pred             HHHHHHhcCCCccc--HHHHHHHHHHHhCccCCCceeHHHHhh
Confidence                    111111  16788888888863  46899998754

>PF14470 bPH_3: Bacterial PH domain

Probab=97.18  E-value=0.00048  Score=55.66  Aligned_cols=88  Identities=22%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             CCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee------cCccccccchhhhhHHHhhhhcccccCcccEEEE
Q psy4132          11 LSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ------KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILY   84 (473)
Q Consensus        11 l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~------~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~   84 (473)
                      |.+||.+++...+.--+.    .....|.++||+.|||+.      +...-.+|++.|.+++... ++    -.++|.+.
T Consensus         1 L~~~E~I~~~~~~~~~~~----~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~-g~----~~~~i~i~   71 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYF----FTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKK-GI----LGGKITIE   71 (96)
T ss_pred             CcCCCEEEEEEEEEEeec----ccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEc-cc----cccEEEEE
Confidence            679999999986643333    567889999999999999      2345699999999998776 55    23567777


Q ss_pred             eecCCCCCCCCCCCCCCCCeEEEe-ccCCCchHHHHHHH
Q psy4132          85 LSKAVPGKNLGPSATSAYDYVKLS-FREGIQNEFLDALK  122 (473)
Q Consensus        85 l~~~~~~~~~~p~~~~~~~~ikls-Fr~gg~~~F~~~l~  122 (473)
                      ..               ...+++. +.++....|++.++
T Consensus        72 ~~---------------~~~~~i~~i~k~~~~~~~~~i~   95 (96)
T PF14470_consen   72 TN---------------GEKIKIDNIQKGDVKEFYEYIK   95 (96)
T ss_pred             EC---------------CEEEEEEEcCHHHHHHHHHHHh
Confidence            62               3466664 66777788887764

>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional

Probab=97.06  E-value=0.0011  Score=67.50  Aligned_cols=53  Identities=25%  Similarity=0.474  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ...+..+|+.+|.+++|.|+.+||..         ++.+|..+|.|+||.|+++||..++..
T Consensus       333 ~~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~D~d~DG~Is~eEf~~~~~~  385 (391)
T PRK12309        333 THAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDALDLNHDGKITPEEMRAGLGA  385 (391)
T ss_pred             hHHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            34456677777777777777777631         456777777777777777777766643

>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins

Probab=97.03  E-value=0.00095  Score=55.82  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccC--CHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ--NPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~--~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ......+...|..+|.|+||.++..|+..+.....  ..-+...+...|.|+||.|++.||..
T Consensus        50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~  112 (113)
T PF10591_consen   50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN  112 (113)
T ss_dssp             GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred             hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence            34566788899999999999999999999866332  33378899999999999999999975

SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.

>KOG0040|consensus

Probab=97.02  E-value=0.0052  Score=69.45  Aligned_cols=88  Identities=20%  Similarity=0.381  Sum_probs=71.0

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhcc----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..++....++.-+|+.||++.+|.++..+|+. +..+|          +.|..++++..+|++.+|.|+..+|+.+|...
T Consensus      2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred             CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence            34567788899999999999999999999988 43433          24568899999999999999999999999766


Q ss_pred             ccC-CCcHHHHHHHhHHhcC
Q psy4132         302 SVK-GDRESKLKFAFRIYDI  320 (473)
Q Consensus       302 ~~~-~~~~e~l~~~F~~~D~  320 (473)
                      ... ....+.+..||+.+|.
T Consensus      2326 ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred             ccccccchHHHHHHHHHhhc
Confidence            432 3345578888888887

>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12

Probab=96.97  E-value=0.002  Score=51.37  Aligned_cols=31  Identities=13%  Similarity=0.075  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .+++++..+++.+|.|++|.|+++||...+.
T Consensus        48 ~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~   78 (88)
T cd05030          48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI   78 (88)
T ss_pred             CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence            4488999999999999999999999987664

Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.

>KOG0377|consensus

Probab=96.90  E-value=0.0068  Score=60.66  Aligned_cols=146  Identities=16%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcchhc--cCCHHHHHH-HHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQNPLVQRV-IDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~~~~~~~~l-~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      ..+|...|+.+|.+++|+|+...+...++.  +.+.....+ =+....+.+|.+.|.+....+.                
T Consensus       463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~----------------  526 (631)
T KOG0377|consen  463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLD----------------  526 (631)
T ss_pred             hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhh----------------
Confidence            456777899999999999998888763221  111111111 1222345577887777655442                


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhcc
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSG  395 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~  395 (473)
                          .  + ++..+ +  -..++..++                 |       ....++.+|+.+|+|+.|.||++||..+
T Consensus       527 ----~--e-~~~~e-a--~~slvetLY-----------------r-------~ks~LetiF~~iD~D~SG~isldEF~~a  572 (631)
T KOG0377|consen  527 ----T--E-VILEE-A--GSSLVETLY-----------------R-------NKSSLETIFNIIDADNSGEISLDEFRTA  572 (631)
T ss_pred             ----h--h-hHHHH-H--HhHHHHHHH-----------------h-------chhhHHHHHHHhccCCCCceeHHHHHHH
Confidence                1  1 22221 0  111111111                 1       1234788999999999999999999999


Q ss_pred             ceeeeec--ccCcHHHHHHHHHHHh--hCCCCCHHHHHHhhCC
Q psy4132         396 VKVLQLK--SCEDASFVEKTYEIVS--QNVFVTVEQFSRLASV  434 (473)
Q Consensus       396 ~~vl~~~--~~~~~~~~~~~~~~~~--~~~~ls~~e~a~~~~~  434 (473)
                      +.++...  -.-+.+.+..+.+.++  +.|.+..-||-+.|-+
T Consensus       573 ~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl  615 (631)
T KOG0377|consen  573 WKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL  615 (631)
T ss_pred             HHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence            8855432  2222344455555443  4578888888776644

>KOG0751|consensus

Probab=96.82  E-value=0.012  Score=59.68  Aligned_cols=150  Identities=13%  Similarity=0.184  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc----h-hccCCHHHHHH-HHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL----P-ELQQNPLVQRV-IDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l----~-~~~~~~~~~~l-~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ..+...+--.|...+.++.-+.+.++|.+-    . ....++.+-++ -...|.-.||-|+|+||+.+=..++.   ++.
T Consensus        32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~---pDa  108 (694)
T KOG0751|consen   32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA---PDA  108 (694)
T ss_pred             hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC---chH
Confidence            334444444455567788889999999872    1 12233443344 44457788999999999987766644   367


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhch----hhcCC------------CccchhHHHHHHHhhhCCCCCCHHHHH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEP----LTSAG------------GTMLLTDAYCRINRARGLELLSPEDLL  373 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~----~~~~~------------g~i~l~d~~~~~~~~~g~~~ls~~ei~  373 (473)
                      ....+|..||+.++|.++.+++.++.....-.    +.-.+            ..++..++-..+..      .-.|...
T Consensus       109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~------~~~E~~~  182 (694)
T KOG0751|consen  109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHE------FQLEHAE  182 (694)
T ss_pred             HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHH------HHHHHHH
Confidence            77889999999999998885544443322211    00000            12333333333322      2234566


Q ss_pred             HHHHHhccCCCCCeeHHhhhc
Q psy4132         374 NSCLALDKLPDSPIYLKTYSS  394 (473)
Q Consensus       374 ~~~~~~D~~~dg~Is~~EF~~  394 (473)
                      ++|+.-|+.++|.||--+|..
T Consensus       183 qafr~~d~~~ng~is~Ldfq~  203 (694)
T KOG0751|consen  183 QAFREKDKAKNGFISVLDFQD  203 (694)
T ss_pred             HHHHHhcccCCCeeeeechHh
Confidence            789999999999998777754

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=96.78  E-value=0.00089  Score=39.84  Aligned_cols=22  Identities=32%  Similarity=0.668  Sum_probs=13.2

Q ss_pred             HHHHHhhCCCCCCCccHHHHhc
Q psy4132         243 GKRFRKLDLDNSGALSIDEFMS  264 (473)
Q Consensus       243 ~~~F~~~D~d~~G~Is~~el~~  264 (473)
                      +++|+.+|.|++|.|+.+||.+
T Consensus         2 ~~~F~~~D~d~DG~is~~E~~~   23 (25)
T PF13202_consen    2 KDAFQQFDTDGDGKISFEEFQR   23 (25)
T ss_dssp             HHHHHHHTTTSSSEEEHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHHH
Confidence            4456666666666666666554

...

>PF14658 EF-hand_9: EF-hand domain

Probab=96.71  E-value=0.0016  Score=48.28  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=45.8

Q ss_pred             HHHHhhhh-------hhhHHHHHHHHhh-hhhhhhhhhhcccccccccCCCC-CceeHHHHHHHHc
Q psy4132         171 NAFKDLNQ-------LMSMAKEMVEISK-NISNKIINRQGEITEDDSNKDRD-GKINFQEFCSIVG  227 (473)
Q Consensus       171 eaF~~lD~-------~~e~~~~l~~lg~-~~~~~~~~~~~~~~~~~~D~d~d-G~I~f~EF~~~~~  227 (473)
                      .+|+.+|.       +..+...|++++. .|++.  +++....+  +|+++. |.|+|+.|+.+|.
T Consensus         2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~--~Lq~l~~e--lDP~g~~~~v~~d~F~~iM~   63 (66)
T PF14658_consen    2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEES--ELQDLINE--LDPEGRDGSVNFDTFLAIMR   63 (66)
T ss_pred             cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHH--HHHHHHHH--hCCCCCCceEeHHHHHHHHH
Confidence            37888888       7888899999999 88888  77777664  899987 9999999999986

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=96.71  E-value=0.0011  Score=41.68  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=18.0

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcch
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLP  266 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~  266 (473)
                      +++.+|+.+|.|++|+|+.+||..++
T Consensus         1 ~l~~~F~~~D~d~dG~I~~~el~~~l   26 (31)
T PF13405_consen    1 RLREAFKMFDKDGDGFIDFEELRAIL   26 (31)
T ss_dssp             HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence            35677777777777777777777643

...

>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10

Probab=96.63  E-value=0.0076  Score=47.96  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=27.5

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      -.|..+.++++.+|.|+||.|+|+||...+-
T Consensus        45 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~   75 (91)
T cd05024          45 NDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA   75 (91)
T ss_pred             CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            4688899999999999999999999986554

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A

Probab=96.55  E-value=0.0042  Score=51.02  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=53.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+...+...|+.+|. ++|.|+.++.+.++. .+ ....+..++...|.+++|.++++||+-+|+..
T Consensus         5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li   72 (104)
T PF12763_consen    5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI   72 (104)
T ss_dssp             SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence            45677889999999986 689999999998643 22 23568999999999999999999999988654

...

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=96.40  E-value=0.0043  Score=36.87  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=18.9

Q ss_pred             HHHHHHhcCCCCCcccHHHHHHH
Q psy4132         275 QRVIDIFDEDRNGEVDFKEFIQG  297 (473)
Q Consensus       275 ~~l~~~~D~d~dG~I~~~EF~~~  297 (473)
                      +..|+.+|.|+||.|+++||..+
T Consensus         2 ~~~F~~~D~d~DG~is~~E~~~~   24 (25)
T PF13202_consen    2 KDAFQQFDTDGDGKISFEEFQRL   24 (25)
T ss_dssp             HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHHHH
Confidence            46788888888899988888764

...

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=96.37  E-value=0.00074  Score=51.12  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             CCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cC--ccccccchhhhhHHH
Q psy4132          11 LSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KD--ITLCLALSYIQNAVE   67 (473)
Q Consensus        11 l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~--~~~~l~l~~v~~~~~   67 (473)
                      |-++|.++-. -.+.|..+   .....|+||||+|||+|.    ..  ..+.|||.+|.+++.
T Consensus         9 lp~~E~li~~-~~c~l~~~---~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    9 LPEEERLIEE-YSCALFKS---KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEK   67 (69)
T ss_dssp             --TT--EEEE-EEETTTEE------EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEE
T ss_pred             CCCCCeEEEE-EEEEEECC---ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEE
Confidence            4556666554 23333332   456889999999999999    22  268999999998764

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=96.36  E-value=0.0024  Score=47.03  Aligned_cols=52  Identities=17%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             CCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----c-Cc-cccccchhhhhHHH
Q psy4132          11 LSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----K-DI-TLCLALSYIQNAVE   67 (473)
Q Consensus        11 l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~-~~-~~~l~l~~v~~~~~   67 (473)
                      |-++|..+.. -.+.|.    ......|+||||+|||+|.    + .. .+.|||.+|.+++.
T Consensus         2 l~~~E~l~~~-~~C~l~----~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k   59 (61)
T smart00568        2 LPEEEKLIAD-YSCYLS----RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK   59 (61)
T ss_pred             cCCCcEEEEE-EEeEEC----CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence            3456665443 444444    3356799999999999999    2 23 68999999998764

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.08  E-value=0.027  Score=42.42  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             cHHHHHHHHHHHhhCCC--CCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         406 DASFVEKTYEIVSQNVF--VTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~--ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      +...-.+++.++...+.  +|+.|+|..+|++..-++..|...++.|+|+++.+
T Consensus         4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~   57 (68)
T smart00550        4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGG   57 (68)
T ss_pred             chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence            34566788888888877  99999999999999999999999999999999876

Helix-turn-helix-containing domain. Also known as Zab.

>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins

Probab=95.79  E-value=0.012  Score=49.84  Aligned_cols=90  Identities=18%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee------c-Cc-cccccchhhhhHHHhhhhcccccCcc
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ------K-DI-TLCLALSYIQNAVEEAKSMFNLTAGR   79 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~------~-~~-~~~l~l~~v~~~~~~~~~~~~~~~s~   79 (473)
                      .+.|-+||.++..-.-            ....+.+|++|||.+      + +. -.++|.+.|.++..+.+|.|  -...
T Consensus        24 ~~~L~~gE~I~~ayk~------------iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~--DlD~   89 (124)
T PF08000_consen   24 EPLLLDGEEIEAAYKL------------IRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTF--DLDS   89 (124)
T ss_dssp             GGGSSTT--EEEEEEE------------SSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSST--TSEE
T ss_pred             HHhcCCCCeeeeeehh------------hceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcc--cCcc
Confidence            5567788888765433            367899999999999      2 22 35999999999998888875  5788


Q ss_pred             cEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCC-chHHHHHHHHH
Q psy4132          80 KIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI-QNEFLDALKST  124 (473)
Q Consensus        80 ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg-~~~F~~~l~~~  124 (473)
                      -|+++++.             ....+.+.|+++- -.++++.|...
T Consensus        90 Elki~i~~-------------~~~~i~~~f~k~~di~~i~k~L~~~  122 (124)
T PF08000_consen   90 ELKIWISG-------------QGFPIEFEFKKKTDIYEIYKALAEY  122 (124)
T ss_dssp             EEEEEETT-------------ESSEEEEEEGTTSHHHHHHHHHHHH
T ss_pred             cEEEEECC-------------CcEEEEEecCCCCCHHHHHHHHHHH
Confidence            89998852             2234667898774 46788877654

; PDB: 3DCX_E 3HSA_C 3B77_D.

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=95.76  E-value=0.0068  Score=37.94  Aligned_cols=27  Identities=19%  Similarity=0.134  Sum_probs=22.8

Q ss_pred             HHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         371 DLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       371 ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ++..+|+.+|.|+||.|+.+||..+++
T Consensus         1 ~l~~~F~~~D~d~dG~I~~~el~~~l~   27 (31)
T PF13405_consen    1 RLREAFKMFDKDGDGFIDFEELRAILR   27 (31)
T ss_dssp             HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence            367899999999999999999987664

...

>KOG0041|consensus

Probab=95.61  E-value=0.028  Score=50.69  Aligned_cols=64  Identities=25%  Similarity=0.431  Sum_probs=51.6

Q ss_pred             HHhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         160 EKQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       160 ~~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      +=.+.+.+.+...|..+|.       ++++..-|.+||..-+..  .+..+|++  +|.|.||+|+|.||+.++.
T Consensus        92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL--~lK~mike--Vded~dgklSfreflLIfr  162 (244)
T KOG0041|consen   92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL--GLKNMIKE--VDEDFDGKLSFREFLLIFR  162 (244)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH--HHHHHHHH--hhcccccchhHHHHHHHHH
Confidence            4445566778888888887       888999999998777766  66777775  8889999999999998876

>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional

Probab=95.26  E-value=0.039  Score=56.32  Aligned_cols=25  Identities=24%  Similarity=0.112  Sum_probs=17.4

Q ss_pred             HHHHHHhccCCCCCeeHHhhhccce
Q psy4132         373 LNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       373 ~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ..+|..+|.|+||.|+++||..++.
T Consensus       360 ~~~F~~~D~d~DG~Is~eEf~~~~~  384 (391)
T PRK12309        360 DAVFDALDLNHDGKITPEEMRAGLG  384 (391)
T ss_pred             HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence            4567777777777777777776554

>KOG4666|consensus

Probab=95.09  E-value=0.034  Score=53.74  Aligned_cols=90  Identities=8%  Similarity=0.058  Sum_probs=69.8

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccC---CHHHHHHHHHhcCCC
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ---NPLVQRVIDIFDEDR  285 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~---~~~~~~l~~~~D~d~  285 (473)
                      +|.+++|.++|.|.+..++--   -........++-+|+.|+.+.||.+...+|..+.+...   ...+-.+|...+...
T Consensus       268 Fde~~tg~~D~re~v~~lavl---c~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d  344 (412)
T KOG4666|consen  268 FDEGTTGNGDYRETVKTLAVL---CGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKD  344 (412)
T ss_pred             ecCCCCCcccHHHHhhhheee---eCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhccc
Confidence            689999999999998766521   13345677888999999999999999998888644321   223667888899888


Q ss_pred             CCcccHHHHHHHHhhc
Q psy4132         286 NGEVDFKEFIQGVSQF  301 (473)
Q Consensus       286 dG~I~~~EF~~~l~~~  301 (473)
                      +|+|+|.+|..++...
T Consensus       345 ~~ki~~~~f~~fa~~~  360 (412)
T KOG4666|consen  345 DPKIYASNFRKFAATE  360 (412)
T ss_pred             CcceeHHHHHHHHHhC
Confidence            9999999998887543

>KOG3341|consensus

Probab=94.75  E-value=0.44  Score=43.60  Aligned_cols=134  Identities=16%  Similarity=0.113  Sum_probs=93.0

Q ss_pred             HHHHHhchhhcCCCccchhHHHHHHHhhhCC--CCCCHHHHHHHHHHhccCCCCCeeHHh-hhccceeeeecccCcHHHH
Q psy4132         334 LIAALIEPLTSAGGTMLLTDAYCRINRARGL--ELLSPEDLLNSCLALDKLPDSPIYLKT-YSSGVKVLQLKSCEDASFV  410 (473)
Q Consensus       334 l~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~--~~ls~~ei~~~~~~~D~~~dg~Is~~E-F~~~~~vl~~~~~~~~~~~  410 (473)
                      +.++....-..++|.|++.|+-..+.+.++.  +.++.+|+..+++.+-.-+.|..-..= =...++.++.-...|.   
T Consensus       102 viEvC~at~~~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~gFev~~iggK~~vrSVP~ELn~Dh---  178 (249)
T KOG3341|consen  102 VIEVCLATKHTNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSGFEVIKIGGKKLVRSVPTELNMDH---  178 (249)
T ss_pred             HHHHHHHhhcccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCCeEEEEecCEEeeecCcchhcccH---
Confidence            3333333334567899999988766666653  458999999999888888877432110 0111222222222222   


Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccc--ccccccccCc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEG--LRFYENKFLL  470 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g--~~~~~n~~~~  470 (473)
                      ..++++.+..+.+|...+-.-++|...=|..-|+.....|++-.|.+..+  ..|+|-.|..
T Consensus       179 t~ILela~~~gyvt~s~l~~~l~We~~Ra~qaLe~lv~egL~WiD~q~g~e~~YW~ps~~~~  240 (249)
T KOG3341|consen  179 TVILELAEILGYVTISLLKANLGWERSRAIQALEHLVKEGLAWIDLQAGDEAAYWFPSLFTD  240 (249)
T ss_pred             HHHHHHHHhcCceeHHHHHHhccchHHHHHHHHHHHHhccceeeeccCCcceeeechhhhhH
Confidence            46677888889999999999999999999999999999999999965544  6677776643

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=94.73  E-value=0.036  Score=41.86  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +..|.+++...+.+|..|+|+.|++|.......|+..+.+|.|.+-+
T Consensus         2 L~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen    2 LQEIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             CHHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence            45788899999999999999999999999999999999999998755

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=94.73  E-value=0.079  Score=38.82  Aligned_cols=52  Identities=13%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             CcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         405 EDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +.+.+++.|+.+-...+.++..+||+.+++|..-+.+.|...++.|+|+++.
T Consensus         5 ~~e~YL~~Iy~l~~~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~   56 (60)
T PF01325_consen    5 SEEDYLKAIYELSEEGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEP   56 (60)
T ss_dssp             HHHHHHHHHHHHHHCTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence            4578999999999888899999999999999999999999999999998754

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>KOG0046|consensus

Probab=94.56  E-value=0.071  Score=54.81  Aligned_cols=67  Identities=22%  Similarity=0.400  Sum_probs=54.8

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc-------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~-------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+...+++.|..+| +++|+|+..|+..++...       ....++.++...+.|.+|.|+|++|+..+..+
T Consensus        13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l   86 (627)
T KOG0046|consen   13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL   86 (627)
T ss_pred             ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence            45677888999999999 999999999998853321       13357889999999999999999999976544

>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form

Probab=94.51  E-value=0.043  Score=46.08  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             CCCCCCeEEEeccCCCchHHHHHHHHHHhhh
Q psy4132          98 ATSAYDYVKLSFREGIQNEFLDALKSTVDAK  128 (473)
Q Consensus        98 ~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~  128 (473)
                      +|.....+||+||+||+++|.+++.++-++-
T Consensus         4 Gw~g~~~fKltFk~GGAieFgq~~~~~~~~a   34 (116)
T PF10349_consen    4 GWEGQAEFKLTFKSGGAIEFGQAMLRLAERA   34 (116)
T ss_pred             CccCceEEEEEeCCCChHHHHHHHHHHHHHH
Confidence            4667789999999999999999998876553

These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=94.50  E-value=0.088  Score=38.13  Aligned_cols=46  Identities=20%  Similarity=0.261  Sum_probs=42.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ..+++++...+.+|..++|+.+++|..-++.-|...++.|.|-|--
T Consensus         3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~   48 (57)
T PF08220_consen    3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTH   48 (57)
T ss_pred             HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence            5678889999999999999999999999999999999999987643

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=94.45  E-value=0.017  Score=44.88  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=38.0

Q ss_pred             ccCcEEEeeeee--eeee-----cCccccccchhhhhHHHhhhhcccccCcccEEEEeecC
Q psy4132          35 FQRGELILTSHR--LFWQ-----KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKA   88 (473)
Q Consensus        35 ~~~G~l~LTshR--ii~~-----~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~   88 (473)
                      .++|+|+||+-|  +.|.     +...+++|+..|.+.....      -.|||+.|.|-..
T Consensus        11 K~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp------~~s~Kv~Lki~~~   65 (79)
T PF08567_consen   11 KKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSP------EGSPKVMLKIVLK   65 (79)
T ss_dssp             TEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--------TTSSTEEEEEEET
T ss_pred             cCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCC------CCCcceEEEEEEe
Confidence            577999999999  9999     2235999999999985554      3789999998643

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=94.43  E-value=0.042  Score=39.23  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             CceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhH
Q psy4132          15 ESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNA   65 (473)
Q Consensus        15 E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~   65 (473)
                      |.++-..++|.=--|+   +=+-|++++|+.|+||.    +..-+|||.-.|..+
T Consensus         1 E~v~~~~~~Ved~kgn---~G~~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~~i   52 (55)
T smart00683        1 ERVLTRINGVEDTKGN---NGDLGVFFVTNLRLVWHSDTNPRFNISVGYLQITNV   52 (55)
T ss_pred             CEEEeeecCeEecCCC---CCCeeEEEEEeeEEEEEeCCCCceEEEEcceeEEEE
Confidence            4455555665422222   22569999999999999    555689988777654

4, worm R01H10.6, fly CG1126 etc.

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=94.28  E-value=0.19  Score=34.77  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCc
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKL  452 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l  452 (473)
                      -.+++.++..++++|..|+|+.+++|..-+...|...++.|.|
T Consensus         5 ~~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I   47 (48)
T PF13412_consen    5 QRKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLI   47 (48)
T ss_dssp             HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCc
Confidence            4677888889999999999999999999999999999999986

...

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=94.10  E-value=0.16  Score=50.06  Aligned_cols=97  Identities=19%  Similarity=0.340  Sum_probs=71.1

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhHHHhhhhcccccCcccEEE
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAVEEAKSMFNLTAGRKIIL   83 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~   83 (473)
                      +..|-|+|.++-..+||---..++- +.  |+.++|++||+|.    ...-+|||.=.|.++..-...|    .. -+++
T Consensus       148 ~L~lLp~E~v~~~~~gVwnls~dqG-nL--GtfivTNvRiVW~A~~ne~fNVSiPylqi~~i~ir~SKf----G~-aLVi  219 (339)
T PF07289_consen  148 QLKLLPQEQVYSRVNGVWNLSSDQG-NL--GTFIVTNVRIVWFADMNESFNVSIPYLQIKSIRIRDSKF----GP-ALVI  219 (339)
T ss_pred             eEeeCCccEEeeccCCEEEcccCCC-ce--eEEEEeeeEEEEEccCCccccccchHhhheeeeeecccc----ce-EEEE
Confidence            3447899999999999988877643 22  9999999999999    4456899999999986555334    22 2444


Q ss_pred             EeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHH
Q psy4132          84 YLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTV  125 (473)
Q Consensus        84 ~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l  125 (473)
                      ...+            .++.|| |.||-.+.....+.+++..
T Consensus       220 eT~~------------~sGgYV-LGFRvDP~ErL~~l~KEi~  248 (339)
T PF07289_consen  220 ETSE------------SSGGYV-LGFRVDPEERLQELFKEIQ  248 (339)
T ss_pred             EEec------------cCCcEE-EEEEcCHHHHHHHHHHHHH
Confidence            4432            244676 8999998887777777654

It consists of eukaryotic proteins of around 375 residues in length.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.01  E-value=0.088  Score=38.79  Aligned_cols=51  Identities=24%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             HHHHHHHhh-CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccc
Q psy4132         411 EKTYEIVSQ-NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGL  461 (473)
Q Consensus       411 ~~~~~~~~~-~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~  461 (473)
                      ++|+.++.. .++++..|+|..+++|..-|+..|...+..|.|-+....-|.
T Consensus         3 e~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~~~rG~   54 (62)
T PF04703_consen    3 EKILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSPVRRGK   54 (62)
T ss_dssp             HCHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES-SSSS
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCCCc
Confidence            346666666 789999999999999999999999999999999887765553

>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A

Probab=93.65  E-value=0.2  Score=35.17  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=15.6

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         274 VQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       274 ~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      +..+|+.+|.+++|.+.-+||..++.
T Consensus        23 A~~LFq~~D~s~~g~Le~~Ef~~Fy~   48 (51)
T PF14788_consen   23 ARQLFQECDKSQSGRLEGEEFEEFYK   48 (51)
T ss_dssp             HHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCccHHHHHHHHH
Confidence            55666666666666666666665554

...

>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A

Probab=93.60  E-value=0.16  Score=41.76  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHhccCCCCCeeHHhhhccceee
Q psy4132         366 LLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVL  399 (473)
Q Consensus       366 ~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl  399 (473)
                      .++.+.+.+|+...|.++||.++++||.-++..+
T Consensus        39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li   72 (104)
T PF12763_consen   39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI   72 (104)
T ss_dssp             TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence            3889999999999999999999999998777644

...

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=93.11  E-value=0.33  Score=37.29  Aligned_cols=47  Identities=17%  Similarity=0.140  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +.++-.++..++..++.++|+.|+.|..+...+|+..+.+|+|.|=+
T Consensus         4 L~qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~   50 (78)
T PRK15431          4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence            56677888999999999999999999999999999999999999754

>smart00054 EFh EF-hand, calcium binding motif

Probab=92.88  E-value=0.17  Score=29.62  Aligned_cols=24  Identities=33%  Similarity=0.762  Sum_probs=13.7

Q ss_pred             HHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         275 QRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       275 ~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..+|..+|.+++|.|++.+|..++
T Consensus         3 ~~~f~~~d~~~~g~i~~~e~~~~~   26 (29)
T smart00054        3 KEAFRLFDKDGDGKIDFEEFKDLL   26 (29)
T ss_pred             HHHHHHHCCCCCCcEeHHHHHHHH
Confidence            345555566656666666665554

EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=92.68  E-value=0.25  Score=36.87  Aligned_cols=52  Identities=19%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhCC-CCCHHHHHHhhCCc-HHHHHHHHHHHHHcCCccccCCc
Q psy4132         407 ASFVEKTYEIVSQNV-FVTVEQFSRLASVS-LVIAKHRLLLAETHGKLCRDQSI  458 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~-~ls~~e~a~~~~~s-~~~~~~~l~~~~~~g~l~~d~~~  458 (473)
                      ..++..|.+++..+| .-|.-|||+.+|++ ..-+...|...|+.|+|-|+...
T Consensus         9 ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~~~   62 (65)
T PF01726_consen    9 KEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRRDPGK   62 (65)
T ss_dssp             HHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGCCS
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCCCC
Confidence            567778888777655 57999999999996 99999999999999999998753

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A

Probab=92.03  E-value=0.19  Score=35.26  Aligned_cols=32  Identities=13%  Similarity=-0.023  Sum_probs=25.4

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhcccee
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      ++.+-+..+|+..|++++|.+..+||...++.
T Consensus        18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~   49 (51)
T PF14788_consen   18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKR   49 (51)
T ss_dssp             --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence            67777889999999999999999999876653

...

>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins

Probab=91.97  E-value=0.075  Score=44.43  Aligned_cols=61  Identities=15%  Similarity=0.075  Sum_probs=34.8

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ....+...|..+|.|+||.+...|+..|...|.                           -...=+..+++..|.|+||.
T Consensus        52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---------------------------~~e~C~~~F~~~CD~n~d~~  104 (113)
T PF10591_consen   52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---------------------------PPEHCARPFFRSCDVNKDGK  104 (113)
T ss_dssp             GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---------------------------TTGGGHHHHHHHH-TT-SSS
T ss_pred             hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---------------------------hhHHHHHHHHHHcCCCCCCC
Confidence            345677788888988886666644433332221                           00111556788999999999


Q ss_pred             eeHHhhhc
Q psy4132         387 IYLKTYSS  394 (473)
Q Consensus       387 Is~~EF~~  394 (473)
                      ||+.||..
T Consensus       105 Is~~EW~~  112 (113)
T PF10591_consen  105 ISLDEWCN  112 (113)
T ss_dssp             EEHHHHHH
T ss_pred             CCHHHHcc
Confidence            99999853

SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.

>smart00054 EFh EF-hand, calcium binding motif

Probab=91.72  E-value=0.12  Score=30.21  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             HHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         372 LLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       372 i~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +..+|+.+|.+++|.|++.+|...++
T Consensus         2 ~~~~f~~~d~~~~g~i~~~e~~~~~~   27 (29)
T smart00054        2 LKEAFRLFDKDGDGKIDFEEFKDLLK   27 (29)
T ss_pred             HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence            56789999999999999999987654

EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.

>KOG4065|consensus

Probab=91.35  E-value=0.29  Score=40.24  Aligned_cols=54  Identities=26%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             HHHHhhCCCCCCCccHHHHhcchh-------ccC-------CH----HHHHHHHHhcCCCCCcccHHHHHHH
Q psy4132         244 KRFRKLDLDNSGALSIDEFMSLPE-------LQQ-------NP----LVQRVIDIFDEDRNGEVDFKEFIQG  297 (473)
Q Consensus       244 ~~F~~~D~d~~G~Is~~el~~l~~-------~~~-------~~----~~~~l~~~~D~d~dG~I~~~EF~~~  297 (473)
                      ..|+..|-|++|.++--|+.....       .+.       ..    .++.+++.-|.|+||.|+|-||+..
T Consensus        71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~  142 (144)
T KOG4065|consen   71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR  142 (144)
T ss_pred             hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence            457888888888888888776311       111       11    2456667778999999999999863

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=91.31  E-value=0.64  Score=32.25  Aligned_cols=46  Identities=28%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      .++.++...+++|..++++.+++|..-+...|...+..|+|.+..+
T Consensus         4 ~il~~l~~~~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~   49 (53)
T smart00420        4 QILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHG   49 (53)
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeec
Confidence            3455566678899999999999999999999999999999987653

>KOG0169|consensus

Probab=90.92  E-value=2  Score=46.71  Aligned_cols=135  Identities=14%  Similarity=0.230  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc----cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL----QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~----~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      .......+...|+..|++++|.++..+...+...    ....-+..+|++.+.-+++++...+|..+.......   . .
T Consensus       131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---p-e  206 (746)
T KOG0169|consen  131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---P-E  206 (746)
T ss_pred             cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC---c-h
Confidence            3455677888999999999999999988775221    122346778888888889999999999887655222   2 5


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC----CCCC
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL----PDSP  386 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~----~dg~  386 (473)
                      +..+|..+-.+ .+..+.   .+++.+|                    .-..|.+.++.+..+++++.+...    ..+.
T Consensus       207 v~~~f~~~s~~-~~~ls~---~~L~~Fl--------------------~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~  262 (746)
T KOG0169|consen  207 VYFLFVQYSHG-KEYLST---DDLLRFL--------------------EEEQGEDGATLDEAEEIIERYEPSKEFRRHGL  262 (746)
T ss_pred             HHHHHHHHhCC-CCccCH---HHHHHHH--------------------HHhcccccccHHHHHHHHHHhhhhhhccccce
Confidence            66666666433 223333   3333333                    333333456666666666555322    3456


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      ++++.|.+.+.
T Consensus       263 l~ldgF~~yL~  273 (746)
T KOG0169|consen  263 LSLDGFTRYLF  273 (746)
T ss_pred             ecHHHHHHHhc
Confidence            88888876665

>PRK09334 30S ribosomal protein S25e; Provisional

Probab=90.86  E-value=0.6  Score=36.69  Aligned_cols=48  Identities=21%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC  453 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~  453 (473)
                      |.+..+++.+-+.....+|+.-++..+++..++|+..|..+|++|.|.
T Consensus        25 dk~t~dkl~kEV~~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik   72 (86)
T PRK09334         25 DEELLKRVAKEVKKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLV   72 (86)
T ss_pred             CHHHHHHHHHHhccCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEE
Confidence            567778888777778899999999999999999999999999999884

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=90.74  E-value=0.5  Score=33.32  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=36.4

Q ss_pred             HHHHHhh-CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         413 TYEIVSQ-NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       413 ~~~~~~~-~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +++++.. .+++|..|+|+..++|..-+...|...++.|+|.||+
T Consensus         8 iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~dp   52 (52)
T PF09339_consen    8 ILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERDP   52 (52)
T ss_dssp             HHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEECS
T ss_pred             HHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecCc
Confidence            3444433 4568999999999999999999999999999999985

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=90.36  E-value=0.2  Score=49.41  Aligned_cols=52  Identities=31%  Similarity=0.522  Sum_probs=43.7

Q ss_pred             CCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee----cCccccccchhhhhHH
Q psy4132          11 LSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAV   66 (473)
Q Consensus        11 l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~   66 (473)
                      |++||.++-..++|.    |.| -+-+.|+|++|+-||||.    +...+||-+..|.++.
T Consensus        19 lr~GE~~i~~~~~VE----DtKGN~G~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~   75 (339)
T PF07289_consen   19 LRPGEFIIDRLDPVE----DTKGNNGDRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNIS   75 (339)
T ss_pred             cccceEEEEeeecee----eccCCCCCeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEE
Confidence            789999999999985    444 344899999999999999    6677888888888774

It consists of eukaryotic proteins of around 375 residues in length.

>KOG1029|consensus

Probab=90.30  E-value=1.5  Score=47.45  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             HHHHHHhhC--CCCCCCccHHHHhcc-hhc-cCCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         242 LGKRFRKLD--LDNSGALSIDEFMSL-PEL-QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       242 l~~~F~~~D--~d~~G~Is~~el~~l-~~~-~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ..+-|..|+  +-+.|+|+-..-+.+ +.. ...+.+..|+...|.|+||+++..||.-+|.
T Consensus        15 r~K~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmk   76 (1118)
T KOG1029|consen   15 RQKHDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMK   76 (1118)
T ss_pred             HHHHHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence            334444444  345788888877774 222 2345577888888888888888888877664

>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY

Probab=89.94  E-value=0.59  Score=43.95  Aligned_cols=58  Identities=12%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             eeecccCcHHHHHHHHHHHhh-CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         399 LQLKSCEDASFVEKTYEIVSQ-NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~~-~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +...++++-+.+++|++.++. ++.++..++|..+|+|....++++...|..|.+-...
T Consensus       174 i~tLSySEleAv~~IL~~L~~~egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~  232 (251)
T TIGR02787       174 INTLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS  232 (251)
T ss_pred             HHhccHhHHHHHHHHHHHhccccccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence            455677777888999999999 5999999999999999999999999999999998766

This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=89.88  E-value=0.67  Score=33.66  Aligned_cols=48  Identities=10%  Similarity=0.075  Sum_probs=39.2

Q ss_pred             HHHHHHHhhCCC--CCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc
Q psy4132         411 EKTYEIVSQNVF--VTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI  458 (473)
Q Consensus       411 ~~~~~~~~~~~~--ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~  458 (473)
                      ..++.++...++  +|+.++|+.++++..-+...+...++.|+|.|..+.
T Consensus         8 ~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~   57 (62)
T PF12802_consen    8 FRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDP   57 (62)
T ss_dssp             HHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-S
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence            345556666666  999999999999999999999999999999987554

...

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.45  E-value=1.4  Score=37.11  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      +.+..+|.+++.++|.+|..++....|.+...+...+..+++.|.|-+-+.
T Consensus        11 ~eLk~rIvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~~G~   61 (127)
T PF06163_consen   11 EELKARIVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYRHGR   61 (127)
T ss_pred             HHHHHHHHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence            578899999999999999999999999999999999999999999998553

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=88.58  E-value=0.99  Score=32.48  Aligned_cols=51  Identities=10%  Similarity=0.105  Sum_probs=40.0

Q ss_pred             HHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       414 ~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      +.++. .+.+|..++++.+++|..-+...|...++.|.+-+........|+.
T Consensus         3 l~~l~-~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~   53 (66)
T smart00418        3 LKLLA-EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL   53 (66)
T ss_pred             HHHhh-cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence            33444 6789999999999999999999999999999998665433334443

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=88.44  E-value=1.3  Score=37.46  Aligned_cols=53  Identities=17%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc-cccccc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI-EGLRFY  464 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~-~g~~~~  464 (473)
                      -...+++.++++|.+++|..++.+-.-+..-|+.....|.+-|.... .|-+||
T Consensus        32 v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~   85 (126)
T COG3355          32 VYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYY   85 (126)
T ss_pred             HHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCcee
Confidence            33445557899999999999999999999999999999999997733 554444

>KOG3555|consensus

Probab=88.38  E-value=0.8  Score=44.92  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      -...+...|..+|.+.+|.++..||..+..-....-++.+|...|...||.|+-.||+..+.+-
T Consensus       248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~  311 (434)
T KOG3555|consen  248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS  311 (434)
T ss_pred             hhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence            4567888999999999999999999998666656668999999999999999999999877654

>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]

Probab=88.22  E-value=1.1  Score=36.06  Aligned_cols=48  Identities=19%  Similarity=0.164  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC  453 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~  453 (473)
                      +++.+.++.+-+.....+|+-.++..+|+..++|+..|...+++|.|.
T Consensus        43 dee~~~ki~KEV~~~r~VTpy~la~r~gI~~SvAr~vLR~LeeeGvv~   90 (107)
T COG4901          43 DEELLDKIRKEVPRERVVTPYVLASRYGINGSVARIVLRHLEEEGVVQ   90 (107)
T ss_pred             cHHHHHHHHHhcccceeecHHHHHHHhccchHHHHHHHHHHHhCCcee
Confidence            577888888877777889999999999999999999999999999886

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=87.65  E-value=0.76  Score=33.08  Aligned_cols=47  Identities=15%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI  458 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~  458 (473)
                      .++.++...+++|..++|+.++++.+-+...+...+..|+|.|-.++
T Consensus         7 ~iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~   53 (59)
T PF01047_consen    7 RILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDP   53 (59)
T ss_dssp             HHHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence            45566677788999999999999999999999999999999986543

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PHA02943 hypothetical protein; Provisional

Probab=87.49  E-value=1.3  Score=38.37  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         409 FVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       409 ~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      -...+++++ ..|+.|..|+|+.+|+|.+-|+-.|...|..|.|-+-.
T Consensus        12 R~~eILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~   58 (165)
T PHA02943         12 RMIKTLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVE   58 (165)
T ss_pred             HHHHHHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEe
Confidence            345567777 77899999999999999999999999999999998844

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=86.96  E-value=0.7  Score=34.53  Aligned_cols=52  Identities=19%  Similarity=0.146  Sum_probs=42.3

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFY  464 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~  464 (473)
                      +++..+-..+..|+.|+|+..++|-.-+...|...+++|++-|..+. ..+|+
T Consensus        12 ~vy~~Ll~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~-~~~Y~   63 (68)
T PF01978_consen   12 KVYLALLKNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGR-PKVYR   63 (68)
T ss_dssp             HHHHHHHHHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC-CEEEE
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc-eEEEE
Confidence            44444446789999999999999999999999999999999988733 33443

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=86.93  E-value=1.5  Score=31.95  Aligned_cols=47  Identities=15%  Similarity=0.104  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         409 FVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       409 ~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      ..-.|+.++...++.|..++|+.+++|..-+...|...++.|+|-..
T Consensus        11 ~R~~Il~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~   57 (61)
T PF12840_consen   11 TRLRILRLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVE   57 (61)
T ss_dssp             HHHHHHHHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEe
Confidence            34566777777899999999999999999999999999999998643

...

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=86.66  E-value=1.7  Score=34.15  Aligned_cols=46  Identities=13%  Similarity=0.075  Sum_probs=40.1

Q ss_pred             HHHHHHHhhC-CCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         411 EKTYEIVSQN-VFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       411 ~~~~~~~~~~-~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      -.++.++... +++|..|+|+.+++|..-+...|...++.|+|.++.
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~   54 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDG   54 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecC
Confidence            4455666655 789999999999999999999999999999999874

>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=86.57  E-value=1.2  Score=36.56  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      |.+....+.+-+.....||+..+|..+++..++|+..|..++.+|.|..=..
T Consensus        43 d~~~~~kl~kEV~~~K~ITp~~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~k   94 (105)
T PF03297_consen   43 DKETYDKLLKEVPKMKLITPSVLSERLKINGSLARKALRELESKGLIKPVSK   94 (105)
T ss_dssp             TCHHHHHHHHHCTTSSCECHHHHHHHHCCSCHHHHHHHHHHHHCCSSEEEEC
T ss_pred             cHHHHHHHHHHhccCcEeeHHHHHHhHhhHHHHHHHHHHHHHHCCCEEEEec
Confidence            4677788887777788999999999999999999999999999999975433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.

>KOG4578|consensus

Probab=86.46  E-value=0.32  Score=47.25  Aligned_cols=64  Identities=13%  Similarity=0.262  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhcc---CCH--HHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ---QNP--LVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~---~~~--~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +...+...|..+|+|.++.|...|++.+....   .++  -...+++..|.|+|..|+++|+...+..-
T Consensus       331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~  399 (421)
T KOG4578|consen  331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE  399 (421)
T ss_pred             hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence            34456778999999999999999998853322   222  25789999999999999999999988654

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=86.26  E-value=1.8  Score=37.59  Aligned_cols=51  Identities=12%  Similarity=0.203  Sum_probs=46.8

Q ss_pred             CcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         405 EDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      ..+.+++.++.++...+..+..++|+.+++|.+-+...|...+..|+|.+.
T Consensus         5 ~~edyL~~I~~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~   55 (142)
T PRK03902          5 SMEDYIEQIYLLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYE   55 (142)
T ss_pred             hHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEe
Confidence            346889999999998999999999999999999999999999999999854

>KOG0035|consensus

Probab=85.71  E-value=7.2  Score=43.60  Aligned_cols=92  Identities=20%  Similarity=0.175  Sum_probs=73.1

Q ss_pred             cccchHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhccCCHH-----H---HHHHHHhcCCCCCcccHHHHHHHHhhcc
Q psy4132         232 HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-----V---QRVIDIFDEDRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       232 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~~~~~~-----~---~~l~~~~D~d~dG~I~~~EF~~~l~~~~  302 (473)
                      .........+++..|+.+|+...|..+.+++.. ++.++.+..     .   ..++...|.+..|.++|.+|...|.+-.
T Consensus       739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~  818 (890)
T KOG0035|consen  739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY  818 (890)
T ss_pred             cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence            334456788999999999999999999999998 555554322     2   3455556777789999999999999888


Q ss_pred             cCCCcHHHHHHHhHHhcCCCC
Q psy4132         303 VKGDRESKLKFAFRIYDIDND  323 (473)
Q Consensus       303 ~~~~~~e~l~~~F~~~D~d~d  323 (473)
                      ...+.+.++..+|+.+-++..
T Consensus       819 e~l~~~~r~i~s~~d~~ktk~  839 (890)
T KOG0035|consen  819 EDLDTELRAILAFEDWAKTKA  839 (890)
T ss_pred             hhhcHHHHHHHHHHHHHcchh
Confidence            888888999999998876554

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=85.69  E-value=1.6  Score=39.00  Aligned_cols=45  Identities=11%  Similarity=0.066  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      =.+|+..++.++.+|..++|+..|+|..-..+++...++.|.+.+
T Consensus        16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~   60 (164)
T PRK11169         16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG   60 (164)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence            367888999999999999999999999999999999999999874

>KOG0169|consensus

Probab=85.23  E-value=5.7  Score=43.32  Aligned_cols=89  Identities=16%  Similarity=0.363  Sum_probs=66.6

Q ss_pred             cccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCCHHHHHHHHHhcCCCC
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPLVQRVIDIFDEDRN  286 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~~~~~l~~~~D~d~d  286 (473)
                      .+|++.+|.+++.+-+.+...    ....-....++..|+..|..++|.+...++..+ ......+.+..+|..+-.+ .
T Consensus       144 ~ad~~~~~~~~~~~~~~~~~~----~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~~-~  218 (746)
T KOG0169|consen  144 EADKNKNGHMSFDEVLDLLKQ----LNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSHG-K  218 (746)
T ss_pred             HHccccccccchhhHHHHHHH----HHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhCC-C
Confidence            368889999999987776651    122334556778888889999999999999986 4455566777887777665 8


Q ss_pred             CcccHHHHHHHHhhc
Q psy4132         287 GEVDFKEFIQGVSQF  301 (473)
Q Consensus       287 G~I~~~EF~~~l~~~  301 (473)
                      +.++.++...++...
T Consensus       219 ~~ls~~~L~~Fl~~~  233 (746)
T KOG0169|consen  219 EYLSTDDLLRFLEEE  233 (746)
T ss_pred             CccCHHHHHHHHHHh
Confidence            888888888877655

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=84.66  E-value=3.2  Score=27.92  Aligned_cols=37  Identities=11%  Similarity=0.129  Sum_probs=30.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHH
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAE  447 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~  447 (473)
                      .+|+..++.++..|..++|+..|+|..-..+++...+
T Consensus         6 ~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~   42 (42)
T PF13404_consen    6 RKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE   42 (42)
T ss_dssp             HHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence            5788899999999999999999999999999987653

...

>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional

Probab=84.09  E-value=1.9  Score=41.53  Aligned_cols=50  Identities=14%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +....+|+++++..+.++..|+|+.+++|..-++.-|...|++|.|-|--
T Consensus         4 ~eR~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~r~~   53 (256)
T PRK10434          4 RQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTY   53 (256)
T ss_pred             HHHHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            35678899999999999999999999999999999999999999998743

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=84.08  E-value=2.3  Score=39.66  Aligned_cols=52  Identities=15%  Similarity=0.182  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI  458 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~  458 (473)
                      .+....|+.++...+++|+.|+|..+++|..=++..|+..|.+|.|.+-...
T Consensus        10 ~~tr~~il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~   61 (218)
T COG2345          10 GSTRERILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVERQQ   61 (218)
T ss_pred             ccHHHHHHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeecc
Confidence            4567888899999999999999999999999999999999999999866433

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=84.01  E-value=2.4  Score=34.63  Aligned_cols=44  Identities=14%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++..+..++++|..++|+.+|+|..-+.+++...++.|.|-|
T Consensus         6 ~~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~   49 (108)
T smart00344        6 RKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKG   49 (108)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeec
Confidence            56778888889999999999999999999999999999999874

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>KOG4065|consensus

Probab=83.57  E-value=2.3  Score=35.09  Aligned_cols=29  Identities=17%  Similarity=-0.052  Sum_probs=21.7

Q ss_pred             CCHHHHHH----HHHHhccCCCCCeeHHhhhcc
Q psy4132         367 LSPEDLLN----SCLALDKLPDSPIYLKTYSSG  395 (473)
Q Consensus       367 ls~~ei~~----~~~~~D~~~dg~Is~~EF~~~  395 (473)
                      .|..++..    +++.-|.|+||.|+|-||+..
T Consensus       110 ~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~  142 (144)
T KOG4065|consen  110 SSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR  142 (144)
T ss_pred             CCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence            44445443    467789999999999999754

>KOG0046|consensus

Probab=83.45  E-value=2  Score=44.63  Aligned_cols=51  Identities=10%  Similarity=0.070  Sum_probs=36.3

Q ss_pred             CccchhHHHHHHHhhhC-CCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         347 GTMLLTDAYCRINRARG-LELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       347 g~i~l~d~~~~~~~~~g-~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      |.++..++..++.++.- ......+++.+++...+.|.+|.|++++|...+.
T Consensus        33 G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~   84 (627)
T KOG0046|consen   33 GYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL   84 (627)
T ss_pred             CeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence            55555555555555442 1134578899999999999999999999987443

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=83.42  E-value=2.5  Score=37.26  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC  453 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~  453 (473)
                      .+++..++.++..|..++|+.+|+|..-...++...++.|.+-
T Consensus        12 ~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~   54 (153)
T PRK11179         12 RGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIIT   54 (153)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence            6788999999999999999999999999999999999999985

>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]

Probab=83.25  E-value=2  Score=41.26  Aligned_cols=48  Identities=27%  Similarity=0.274  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         408 SFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       408 ~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      ....+|++++++.+.++..|+++.|++|..-++.=|...|++|.|-|-
T Consensus         5 eR~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R~   52 (253)
T COG1349           5 ERHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLLRV   52 (253)
T ss_pred             HHHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEEE
Confidence            456789999999999999999999999999999999999999999983

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=82.89  E-value=2.9  Score=40.17  Aligned_cols=47  Identities=26%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         408 SFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       408 ~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .....+++++...+.++..|+|+.+++|..-++..|...++.|.+.|
T Consensus         5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~r   51 (251)
T PRK13509          5 QRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKK   51 (251)
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence            45678899999999999999999999999999999999999999987

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=82.75  E-value=3.2  Score=29.34  Aligned_cols=40  Identities=10%  Similarity=0.150  Sum_probs=33.6

Q ss_pred             HHHHHHH-hhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcC
Q psy4132         411 EKTYEIV-SQNVFVTVEQFSRLASVSLVIAKHRLLLAETHG  450 (473)
Q Consensus       411 ~~~~~~~-~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g  450 (473)
                      .+++.++ ...+.+|..++|..+++|..-+...|....+.|
T Consensus         3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~   43 (55)
T PF08279_consen    3 KQILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence            3456666 566679999999999999999999999999998

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>KOG1955|consensus

Probab=82.50  E-value=2.6  Score=43.42  Aligned_cols=70  Identities=16%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccC--CHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ--NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV  303 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~--~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~  303 (473)
                      ...++.+.+.+.|+.+-.|-+|.|+-.--+.++....  -+++..|++..|.|.||.+++.|||..++....
T Consensus       225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa  296 (737)
T KOG1955|consen  225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA  296 (737)
T ss_pred             cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence            4566777788899999999999999887777654432  345778999999999999999999999986643

>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional

Probab=82.31  E-value=2.6  Score=40.53  Aligned_cols=48  Identities=23%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         408 SFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       408 ~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      .....+.+++...+.++..|+++.+++|..-++.-|...|++|.|.|-
T Consensus         5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~r~   52 (252)
T PRK10906          5 QRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRH   52 (252)
T ss_pred             HHHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence            456788999999999999999999999999999999999999999874

>PRK00082 hrcA heat-inducible transcription repressor; Provisional

Probab=82.28  E-value=1.9  Score=43.45  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             HHHhhCCCCCHHHHHHh--hCCcHHHHHHHHHHHHHcCCccccC-------CcccccccccccCc
Q psy4132         415 EIVSQNVFVTVEQFSRL--ASVSLVIAKHRLLLAETHGKLCRDQ-------SIEGLRFYENKFLL  470 (473)
Q Consensus       415 ~~~~~~~~ls~~e~a~~--~~~s~~~~~~~l~~~~~~g~l~~d~-------~~~g~~~~~n~~~~  470 (473)
                      .++....+++..++++.  +++|..-++..|...|+.|+|.+-.       +..|.|||.+..+.
T Consensus        18 ~yi~~~~pv~s~~l~~~~~l~~S~aTIR~dm~~Le~~G~l~~~h~sagrIPT~kGYR~YVd~L~~   82 (339)
T PRK00082         18 DYIATGEPVGSKTLSKRYGLGVSSATIRNDMADLEELGLLEKPHTSSGRIPTDKGYRYFVDHLLE   82 (339)
T ss_pred             HHHhcCCCcCHHHHHHHhCCCCChHHHHHHHHHHHhCCCcCCCcCCCCCCcCHHHHHHHHHHhCC
Confidence            36777899999999976  9999999999999999999999765       55589999997765

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=81.28  E-value=3.3  Score=36.19  Aligned_cols=46  Identities=9%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      =.+++++++.++..|..++|+..|+|..-..+++...++.|.+-+-
T Consensus        10 D~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~   55 (154)
T COG1522          10 DRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGY   55 (154)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeE
Confidence            3788999999999999999999999999999999999999988753

>PRK11050 manganese transport regulator MntR; Provisional

Probab=80.91  E-value=4.6  Score=35.57  Aligned_cols=51  Identities=12%  Similarity=0.014  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      .+.++..+..++...++++..++|+.++++..-....|...+..|+|.|..
T Consensus        35 ~e~~l~~I~~~l~~~~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~   85 (152)
T PRK11050         35 IEDYVELIADLIAEVGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRP   85 (152)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence            356667778788778899999999999999999999999999999998754

>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []

Probab=80.88  E-value=4  Score=28.65  Aligned_cols=44  Identities=25%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             HHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         414 YEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       414 ~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      .++++.++.+|..++-..++.|=..|.-.|+.....|...|.+.
T Consensus         2 ~~~~~~~~~itv~~~rd~lg~sRK~ai~lLE~lD~~g~T~R~gd   45 (50)
T PF09107_consen    2 RELLQKNGEITVAEFRDLLGLSRKYAIPLLEYLDREGITRRVGD   45 (50)
T ss_dssp             HHHHHTTSSBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred             hHHHhcCCcCcHHHHHHHHCccHHHHHHHHHHHhccCCEEEeCC
Confidence            35667789999999999999999999999999999999999874

Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=80.65  E-value=4  Score=36.99  Aligned_cols=43  Identities=12%  Similarity=-0.012  Sum_probs=37.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC  453 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~  453 (473)
                      ..++..+-..+.+|.+++|..+|++..-.+..|....+.|++.
T Consensus        25 ~~Vl~~L~~~g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~   67 (178)
T PRK06266         25 FEVLKALIKKGEVTDEEIAEQTGIKLNTVRKILYKLYDARLAD   67 (178)
T ss_pred             hHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence            3445555566789999999999999999999999999999999

>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional

Probab=80.57  E-value=3.3  Score=40.24  Aligned_cols=50  Identities=26%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ......|.++++..+.++..|+|+.+++|..-++.-|...|++|.+.|-.
T Consensus        16 ~eR~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~r~~   65 (269)
T PRK09802         16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAY   65 (269)
T ss_pred             HHHHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEe
Confidence            45678888999999999999999999999999999999999999999866

>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C

Probab=80.51  E-value=2.7  Score=32.62  Aligned_cols=51  Identities=10%  Similarity=0.029  Sum_probs=36.7

Q ss_pred             CccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC----CCCCeeHHhhhccce
Q psy4132         347 GTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL----PDSPIYLKTYSSGVK  397 (473)
Q Consensus       347 g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~----~dg~Is~~EF~~~~~  397 (473)
                      +.|+..++...++...+...++++++.++++.+..+    ..+.++++.|...+.
T Consensus        14 ~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~   68 (83)
T PF09279_consen   14 EYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF   68 (83)
T ss_dssp             SSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence            556666666666666665457889999988887654    378999999987664

It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=80.11  E-value=3.8  Score=37.90  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ..++.++...++++..++|+.+++|...+...|...++.|+|.|...
T Consensus       146 ~~IL~~l~~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~  192 (203)
T TIGR01884       146 LKVLEVLKAEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR  192 (203)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence            46677777778899999999999999999999999999999999874

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	473
1mf8_B	170	Crystal Structure Of Human Calcineurin Complexed Wi		2e-34
1tco_B	169	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-34
2p6b_B	156	Crystal Structure Of Human Calcineurin In Complex W		2e-34
3ll8_B	155	Crystal Structure Of Calcineurin In Complex With Ak		2e-34
2zme_B	238	Integrated Structural And Functional Model Of The H		1e-32
3cuq_B	218	Integrated Structural And Functional Model Of The H		2e-32
2hth_B	140	Structural Basis For Ubiquitin Recognition By The H		2e-17
2dx5_A	139	The Complex Structure Between The Mouse Eap45-Glue		5e-16
2ct9_A	208	The Crystal Structure Of Calcineurin B Homologous P		2e-06
2e30_A	195	Solution Structure Of The Cytoplasmic Region Of Na+		2e-06
3l19_A	214	Crystal Structure Of Calcium Binding Domain Of Cpcd		4e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		5e-05
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-04
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-04
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-04
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-04
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		5e-04
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		6e-04
3khe_A	191	Crystal Structure Of The Calcium-Loaded Calmodulin-		7e-04

>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With Cyclosporin A And Human Cyclophilin Length = 170

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 76/79 (96%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 19  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 78
Query: 298 VSQFSVKGDRESKLKFAFR 316
           VSQFSVKGD+E KL+FAFR
Sbjct: 79  VSQFSVKGDKEQKLRFAFR 97

>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 169

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 76/79 (96%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 18  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 77
Query: 298 VSQFSVKGDRESKLKFAFR 316
           VSQFSVKGD+E KL+FAFR
Sbjct: 78  VSQFSVKGDKEQKLRFAFR 96

>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With Pvivit Peptide Length = 156

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 76/79 (96%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 5   EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 64
Query: 298 VSQFSVKGDRESKLKFAFR 316
           VSQFSVKGD+E KL+FAFR
Sbjct: 65  VSQFSVKGDKEQKLRFAFR 83

>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79 Peptide Length = 155

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 76/79 (96%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 4   EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 63
Query: 298 VSQFSVKGDRESKLKFAFR 316
           VSQFSVKGD+E KL+FAFR
Sbjct: 64  VSQFSVKGDKEQKLRFAFR 82

>pdb|2ZME|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 238

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 330 LGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL 389
           L  +L   L  PL   GG M LT+ YC +NRARG+ELLSPEDL+N+C  L+ L   P+ L
Sbjct: 97  LAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEAL-KLPLRL 155
Query: 390 KTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETH 449
           + + SGV V++L+S ++   V    E VS+   +T E+F++L  +S+++AK RLLLAE  
Sbjct: 156 RVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKM 215
Query: 450 GKLCRDQSIEGLRFYENKFL 469
           G LCRD S+EGLRFY N F+
Sbjct: 216 GHLCRDDSVEGLRFYPNLFM 235

>pdb|3CUQ|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 218

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 330 LGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL 389
           L  +L   L  PL   GG M LT+ YC +NRARG+ELLSPEDL+N+C  L+ L   P+ L
Sbjct: 77  LAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEAL-KLPLRL 135
Query: 390 KTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETH 449
           + + SGV V++L+S ++   V    E VS+   +T E+F++L  +S+++AK RLLLAE  
Sbjct: 136 RVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKM 195
Query: 450 GKLCRDQSIEGLRFYENKFL 469
           G LCRD S+EGLRFY N F+
Sbjct: 196 GHLCRDDSVEGLRFYPNLFM 215

>pdb|2HTH|B Chain B, Structural Basis For Ubiquitin Recognition By The Human Eap45ESCRT-Ii Glue Domain Length = 140

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct: 3   MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 62
Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           +   Q   +EE  +    +A  KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF
Sbjct: 63  ILLSQIVFIEEQAAGIGKSA--KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEF 120
Query: 118 LDALKSTVDAKIW 130
              L   +  + W
Sbjct: 121 YRRLSEEMTQRRW 133

>pdb|2DX5|A Chain A, The Complex Structure Between The Mouse Eap45-Glue Domain And Ubiquitin Length = 139

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW--QKDITLCLA 58
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W  QK+   C+A
Sbjct: 1   MDRFVWTSGLLEINETLVIQQRGVRVYDGEEKIKFDAGTLLLSTHRLIWRDQKNNECCMA 60
Query: 59  LSYIQNA-VEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEF 117
           +   Q   +EE  +    +A  KI+++L  A   K  GP  +S   Y++LSF+E  Q EF
Sbjct: 61  IPLSQIVFIEEQAAGIGKSA--KIVVHLHPAPSNKEPGPFQSSKNSYIRLSFKEHGQIEF 118
Query: 118 LDALKSTVDAKIW 130
              L   +  + W
Sbjct: 119 YRRLSEEMTQRRW 131

>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1 (Chp1) Length = 208

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
           I RL  RF  LD   +G LS ++F  +PEL  NPL  R+I+ F  +   +V+F+ F++ +
Sbjct: 28  ITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTL 87
Query: 299 SQF----------SVKG-----DRESKLKFAFR 316
           + F           V G      R +KL FAFR
Sbjct: 88  AHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120

>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+ Exchanger 1 Complexed With Essential Cofactor Calcineurin B Homologous Protein 1 Length = 195

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
           I RL  RF  LD   +G LS ++F  +PEL  NPL  R+I+ F  +   +V+F+ F++ +
Sbjct: 28  ITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTL 87
Query: 299 SQF----------SVKG-----DRESKLKFAFR 316
           + F           V G      R +KL FAFR
Sbjct: 88  AHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120

>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3, Cgd5_820 Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ-- 269
           DR+G I++ EF ++     + +K ++   +L   F+K D D +G +S+DE  S+  L   
Sbjct: 119 DRNGYIDYSEFVTVA----MDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHL 174
Query: 270 QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           ++   + +I   D + +G+VDF+EF + + + 
Sbjct: 175 ESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL 206

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ-- 269
           DR+G I++ EF ++     + +K ++   +L   F+K D D +G +S+DE  S+  L   
Sbjct: 402 DRNGYIDYSEFVTVA----MDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHL 457
Query: 270 QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           ++   + +I   D + +G+VDF+EF + + + 
Sbjct: 458 ESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL 489

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           D++G I + EF ++  +    +K ++   RL + FR  D DNSG +S  E  ++  +   
Sbjct: 394 DKNGYIEYSEFVTVAXD----RKTLLSRERLERAFRXFDSDNSGKISSTELATIFGVSDV 449
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +   + V+   D++ +GEVDF EF Q
Sbjct: 450 DSETWKSVLSEVDKNNDGEVDFDEFQQ 476

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           D++G I + EF ++     + +K ++   RL + FR  D DNSG +S  E  ++  +   
Sbjct: 417 DKNGYIEYSEFVTVA----MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 472
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +   + V+   D++ +GEVDF EF Q
Sbjct: 473 DSETWKSVLSEVDKNNDGEVDFDEFQQ 499

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           D++G I + EF ++     + +K ++   RL + FR  D DNSG +S  E  ++  +   
Sbjct: 418 DKNGYIEYSEFVTVA----MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 473
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +   + V+   D++ +GEVDF EF Q
Sbjct: 474 DSETWKSVLSEVDKNNDGEVDFDEFQQ 500

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           D++G I + EF ++     + +K ++   RL + FR  D DNSG +S  E  ++  +   
Sbjct: 394 DKNGYIEYSEFVTVA----MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 449
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +   + V+   D++ +GEVDF EF Q
Sbjct: 450 DSETWKSVLSEVDKNNDGEVDFDEFQQ 476

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-----P 266
           D  G I + EF +    + I + +++   R+ + F+  D D SG +S  E   L      
Sbjct: 393 DGSGSIEYSEFIA----SAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADS 448
Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
            +Q   L + +I+  D +++GEVDF EF++ +  F
Sbjct: 449 SIQMEEL-ESIIEQVDNNKDGEVDFNEFVEMLQNF 482

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           DR+G I + EF ++     + K++++   RL   F++ D D SG ++ +E   L  + + 
Sbjct: 373 DRNGYIEYSEFVTVC----MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEV 428
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +    +V+   D++ +GEVDF+EF++
Sbjct: 429 DDETWHQVLQECDKNNDGEVDFEEFVE 455

>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ- 270
           DR+G I + EF ++     + K++++   RL   F++ D D SG ++ +E   L  + + 
Sbjct: 99  DRNGYIEYSEFVTVC----MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEV 154
Query: 271 -NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +    +V+   D++ +GEVDF+EF++
Sbjct: 155 DDETWHQVLQECDKNNDGEVDFEEFVE 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	2e-41
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	3e-10
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	2e-35
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	4e-34
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	9e-16
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	5e-12
1u5t_B	169	Defective in vacuolar protein sorting; VPS36P; ESC	4e-34
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	2e-32
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	4e-07
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	7e-07
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	2e-28
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	1e-07
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	2e-05
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	4e-28
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	1e-08
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	6e-05
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	4e-27
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	4e-09
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	8e-26
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	8e-08
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	1e-25
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	2e-07
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	3e-25
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	2e-06
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	1e-22
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	8e-07
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	1e-21
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	1e-08
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	8e-21
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	1e-07
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	1e-20
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	7e-20
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	3e-07
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	5e-19
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	5e-07
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	6e-19
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	5e-07
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	5e-18
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	2e-06
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	7e-18
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	4e-06
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	2e-17
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	4e-06
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	3e-17
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	5e-07
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	1e-16
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	3e-05
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	2e-15
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	6e-07
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	2e-14
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	2e-13
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	2e-07
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	3e-07
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	3e-13
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	2e-10
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	9e-07
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	5e-13
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	2e-08
1y1x_A	191	Leishmania major homolog of programmed cell death	1e-12
1y1x_A	191	Leishmania major homolog of programmed cell death	2e-08
1y1x_A	191	Leishmania major homolog of programmed cell death	3e-06
1y1x_A	191	Leishmania major homolog of programmed cell death	2e-04
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	1e-12
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	3e-07
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	2e-06
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	1e-12
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	1e-05
2hps_A	186	Coelenterazine-binding protein with bound coelent;	1e-12
2hps_A	186	Coelenterazine-binding protein with bound coelent;	1e-11
2hps_A	186	Coelenterazine-binding protein with bound coelent;	2e-06
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	3e-12
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	2e-09
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	4e-05
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	4e-12
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	2e-08
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	8e-12
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	1e-08
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	2e-11
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	3e-09
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	4e-11
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	5e-10
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	4e-11
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	3e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-11
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-05
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	7e-11
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	2e-09
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	1e-06
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	8e-11
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	8e-07
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	8e-11
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	1e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	9e-11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-09
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	1e-10
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	6e-10
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	5e-08
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	2e-10
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	6e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-10
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	2e-10
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	5e-09
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	4e-10
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	5e-09
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	5e-10
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	2e-08
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	6e-10
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	9e-07
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	6e-10
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	3e-09
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	2e-06
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	6e-10
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	4e-05
3fwb_A	161	Cell division control protein 31; gene gating, com	9e-10
3fwb_A	161	Cell division control protein 31; gene gating, com	9e-07
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	9e-10
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	1e-06
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-09
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	1e-09
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	8e-07
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	1e-09
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	4e-09
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	2e-09
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	1e-05
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	5e-09
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	5e-07
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	6e-09
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	1e-08
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	8e-09
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	2e-04
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	6e-04
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	9e-09
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	1e-08
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	6e-08
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	1e-08
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	6e-04
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	1e-08
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	1e-05
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	2e-08
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	2e-08
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	2e-07
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	3e-08
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	8e-04
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	3e-08
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	4e-08
2jnf_A	158	Troponin C; stretch activated muscle contraction,	4e-08
2jnf_A	158	Troponin C; stretch activated muscle contraction,	2e-07
3li6_A	66	Calcium-binding protein; calcium signaling protein	4e-08
3li6_A	66	Calcium-binding protein; calcium signaling protein	6e-07
3li6_A	66	Calcium-binding protein; calcium signaling protein	3e-04
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	6e-08
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	4e-05
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	6e-08
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	5e-04
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	6e-08
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	9e-05
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	7e-08
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	1e-07
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	8e-08
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	1e-07
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	2e-06
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	1e-07
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	1e-07
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	8e-04
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	1e-07
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	5e-06
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	1e-07
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	2e-05
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	1e-07
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	2e-07
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	4e-07
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	2e-06
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	6e-05
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	2e-06
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	2e-06
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	3e-04
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	4e-06
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	5e-06
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	6e-06
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	8e-06
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	7e-06
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	4e-04
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	1e-05
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	1e-04
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	2e-05
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	2e-05
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	9e-05
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	3e-05
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	3e-05
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	3e-05
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	2e-04
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	5e-05
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	5e-04
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	6e-05
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	9e-05
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	4e-04
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	1e-04
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	1e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	1e-04
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	2e-04
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	2e-04
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	2e-04
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	7e-04
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	3e-04
1c07_A	95	Protein (epidermal growth factor receptor pathway	3e-04
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	6e-04
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	6e-04
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	6e-04
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	7e-04
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	7e-04

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218

 Score =  146 bits (369), Expect = 2e-41
 Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 322 NDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDK 381
           +   Y+  L  +L   L  PL   GG M LT+ YC +NRARG+ELLSPEDL+N+C  L+ 
Sbjct: 69  SGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEA 128

Query: 382 LPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKH 441
           L   P+ L+ + SGV V++L+S ++   V    E VS+   +T E+F++L  +S+++AK 
Sbjct: 129 L-KLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKE 187

Query: 442 RLLLAETHGKLCRDQSIEGLRFYENKFL 469
           RLLLAE  G LCRD S+EGLRFY N F+
Sbjct: 188 RLLLAEKMGHLCRDDSVEGLRFYPNLFM 215

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 28/51 (54%), Positives = 42/51 (82%)

Query: 164 ETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRD 214
           ET  NI+ AF+DL++LM  AKEMVE+SK+I+NKI ++QG+ITED++ + + 
Sbjct: 1   ETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKS 51

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Length = 140

 Score =  127 bits (320), Expect = 2e-35
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW----QKDITLC 56
           MDRF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W      +  + 
Sbjct: 3   MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 62

Query: 57  LALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNE 116
           + LS I    E+A     +    KI+++L  A P K  GP  +S   Y+KLSF+E  Q E
Sbjct: 63  ILLSQIVFIEEQAAG---IGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIE 119

Query: 117 FLDALKSTVDAKIW 130
           F   L   +  + W
Sbjct: 120 FYRRLSEEMTQRRW 133

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score =  134 bits (336), Expect = 4e-34
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 319 DIDNDDDYYQALGNELIAALIEP-----LTSAGGTMLLTDAYCRINRAR--GLELLSPED 371
              N + +   +  E+    +         +    + L D Y   N++   G  L+SP +
Sbjct: 400 KFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPME 459

Query: 372 LLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRL 431
           +  +C   + L  + + L   +  +  +  +  +     EK  +++  N    + + +++
Sbjct: 460 MREACERFEHLGLNELKLVKVNKRILCVTSEKFDV--VKEKLVDLIGDNPGSDLLRLTQI 517

Query: 432 AS-------VSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKF 468
            S        +L I    L      G L  D+ + G+ +Y+N +
Sbjct: 518 LSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSY 561

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 78.6 bits (192), Expect = 9e-16
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 23/148 (15%)

Query: 90  PGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWT----VQNKSAQQTKLREI 145
              +   S  S+ ++V+LSFR+     F  A +  ++  +      + N++       ++
Sbjct: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300

Query: 146 KT-------------------RTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEM 186
           +                    R GI  +E++   +        NNA  DLN+LMS+A  +
Sbjct: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360

Query: 187 VEISKNISNKIINRQGEITEDDSNKDRD 214
             + KN +  +  +   + ++ +  +  
Sbjct: 361 ERLYKNSNITMKTKTLNLQDESTVNEPK 388

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 1   MDRFEY------CSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFW---- 49
           M+ + Y          L   E  +    +V LY G++K  Q QRG + LTS R+ +    
Sbjct: 1   MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60

Query: 50  -QKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLS 108
                +L L L  +        S F LT   ++IL+         LG SA +A   V  +
Sbjct: 61  KPTQNSLGLELDDLAYV--NYSSGF-LTRSPRLILFFKDPSSKDELGKSAETASADVVST 117

Query: 109 FREGI 113
           +   I
Sbjct: 118 WVCPI 122

>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 169

 Score =  125 bits (314), Expect = 4e-34
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 322 NDDDYYQALGNELIAALIEPLTS-----AGGTMLLTDAYCRINRAR--GLELLSPEDLLN 374
           N + +   +  E+    +              + L D Y   N++   G  L+SP ++  
Sbjct: 8   NKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMRE 67

Query: 375 SCLALDKLPDSPIYLKTYSSGVKVLQLKSCED-----ASFVEKTYEIVSQNVFVTVEQFS 429
           +C   + L  + + L   +  +  +  +  +         +          +   +   +
Sbjct: 68  ACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNN 127

Query: 430 RLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKF 468
             ++ +L I    L      G L  D+ + G+ +Y+N +
Sbjct: 128 SKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSY 166

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Length = 155

 Score =  120 bits (302), Expect = 2e-32
 Identities = 72/85 (84%), Positives = 81/85 (95%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
           I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+GV
Sbjct: 5   IKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV 64

Query: 299 SQFSVKGDRESKLKFAFRIYDIDND 323
           SQFSVKGD+E KL+FAFRIYD+D D
Sbjct: 65  SQFSVKGDKEQKLRFAFRIYDMDKD 89

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Length = 155

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 14/91 (15%)

Query: 161 KQKETSS--NINNAFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDD 208
              +      +  AF+  D+++        L  + K MV    N+ +  + +  + T  +
Sbjct: 67  FSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVG--NNLKDTQLQQIVDKTIIN 124

Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
           ++KD DG+I+F+EFC++VG  DIHKKMVVD+
Sbjct: 125 ADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 155

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Length = 155

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            D +G+++F+EF   V  +    K   + ++L   FR  D+D  G +S  E         
Sbjct: 49  TDGNGEVDFKEFIEGV--SQFSVKGDKE-QKLRFAFRIYDMDKDGYISNGELFQVLKMMV 105

Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL 311
             +L + Q   +V + I   D+D +G + F+EF   V       D   K+
Sbjct: 106 GNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVG----GLDIHKKM 151

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Length = 202

 Score =  110 bits (276), Expect = 2e-28
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
            + RL  RFR LD +  G LS  +   +  L  NPL  R+I+ F  D +  VDF  F++ 
Sbjct: 27  SLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRV 86

Query: 298 VSQF----------------SVKGDRESKLKFAFRIYDIDND 323
           ++ F                     R +KL +AF++YD+D D
Sbjct: 87  LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRD 128

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Length = 202

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 26/127 (20%)

Query: 211 KDRDGKINFQEFCSI------VGNTDIHKKMVVDIRRLGKRFRKL-------DLDNSGAL 257
            D   +++F  F  +      V + D   +       L  R  KL       DLD  G +
Sbjct: 72  PDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKI 131

Query: 258 SIDEF---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE 308
           S  E          + + E Q   +  R +   DED +G V F EF + +     K D E
Sbjct: 132 SRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE----KMDVE 187

Query: 309 SKLKFAF 315
            K+    
Sbjct: 188 QKMSIRI 194

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Length = 202

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 12/78 (15%)

Query: 172 AFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQE 221
           AF+  DL++        ++ + + MV     ++ + +    + T  ++++D DG ++F E
Sbjct: 119 AFQLYDLDRDGKISRHEMLQVLRLMVG--VQVTEEQLENIADRTVQEADEDGDGAVSFVE 176

Query: 222 FCSIVGNTDIHKKMVVDI 239
           F   +   D+ +KM + I
Sbjct: 177 FTKSLEKMDVEQKMSIRI 194

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Length = 208

 Score =  109 bits (275), Expect = 4e-28
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 15/102 (14%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
            I RL  RF  LD   +G LS ++F  +PEL  NPL  R+I+ F  +   +V+F+ F++ 
Sbjct: 27  QITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRT 86

Query: 298 VSQFSVKGD---------------RESKLKFAFRIYDIDNDD 324
           ++ F    D               R +KL FAFR+YD+D DD
Sbjct: 87  LAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDD 128

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Length = 208

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 25/126 (19%)

Query: 211 KDRDGKINFQEFCSI------VGNTDIHKKMVVDIRRLGKR------FRKLDLDNSGALS 258
            + + ++NF+ F         + + +  K +        +       FR  DLD    +S
Sbjct: 72  SEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKIS 131

Query: 259 IDEF---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES 309
            DE          +++ + Q   +  R I   D+D +  + F EF++ +     K D E 
Sbjct: 132 RDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLE----KVDVEQ 187

Query: 310 KLKFAF 315
           K+   F
Sbjct: 188 KMSIRF 193

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Length = 208

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 154 IERNIVEKQKETSSNINNAFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGE 203
            + N  E     S+ ++ AF+  DL++        L+ + + MV    NIS++ +    +
Sbjct: 100 KDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV--GVNISDEQLGSIAD 157

Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
            T  ++++D D  I+F EF  ++   D+ +KM +  
Sbjct: 158 RTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRF 193

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Length = 207

 Score =  107 bits (268), Expect = 4e-27
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 238 DIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           ++  L + F+KL   + + G +  +EF   +     ++N    R+ D+FD  RNG ++F 
Sbjct: 35  EVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFG 94

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EF++ +  F        K+KFAF++YD+   
Sbjct: 95  EFVRSLGVFHPSAPVHEKVKFAFKLYDLRQT 125

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Length = 207

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
             R+G I F EF  +      H    V   ++   F+  DL  +G +  +E         
Sbjct: 85  VKRNGVIEFGEF--VRSLGVFHPSAPVH-EKVKFAFKLYDLRQTGFIEREELKEMVVALL 141

Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
               + L E     +V +     D   +G++D  E+   VS 
Sbjct: 142 HESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Length = 226

 Score =  104 bits (260), Expect = 8e-26
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 238 DIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I  L + F+K+   + + G ++ +EF   +     +++    RV D+FD   NG + F+
Sbjct: 46  EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFE 105

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EF + +S F      + K+ F+F++YD+   
Sbjct: 106 EFARALSVFHPNAPIDDKIHFSFQLYDLKQQ 136

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Length = 226

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
              +G + F+EF      +  H    +D  ++   F+  DL   G +   E         
Sbjct: 96  TKHNGILGFEEF--ARALSVFHPNAPID-DKIHFSFQLYDLKQQGFIERQEVKQMVVATL 152

Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
               M+L +     ++ +  +  D   +G++D +E+   V +
Sbjct: 153 AESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score =  102 bits (255), Expect = 1e-25
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 238 DIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-RNGE 288
           +I    +RF +L        +      +  ++ +SLPEL+ NP  +R+  +F        
Sbjct: 18  EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 77

Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           + F++F+  +S FS     + K  +AFRI+D D+D
Sbjct: 78  LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDD 112

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------ 262
           S       ++F++F  ++          +        FR  D D+ G L+ ++       
Sbjct: 70  STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYA---FRIFDFDDDGTLNREDLSRLVNC 126

Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                    L   +   L+  +++  D DR+G ++  EF   +S+
Sbjct: 127 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score =  102 bits (255), Expect = 3e-25
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 238 DIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-RNGE 288
           +I    +RF +L        +      +  ++ +SLPEL+ NP  +R+  +F        
Sbjct: 49  EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 108

Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           + F++F+  +S FS     + K  +AFRI+D D+D
Sbjct: 109 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDD 143

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------ 262
           S       ++F++F  ++          +        FR  D D+ G L+ ++       
Sbjct: 101 STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYA---FRIFDFDDDGTLNREDLSRLVNC 157

Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                    L   +   L+  +++  D DR+G ++  EF   +S+
Sbjct: 158 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Length = 204

 Score = 94.5 bits (235), Expect = 1e-22
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
            ++   K+F  L+   SG L + EF    ++  N      V+ +   FD + +  +DF E
Sbjct: 23  QLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLE 80

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           ++  ++    +G  E KLK+ F+IYD D +
Sbjct: 81  YVAALNLVL-RGTLEHKLKWTFKIYDKDRN 109

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Length = 204

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 25/111 (22%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            + D  I+F E+  +     + +  +    +L   F+  D D +G +   E         
Sbjct: 70  TNGDNTIDFLEY--VAALNLVLRGTLEH--KLKWTFKIYDKDRNGCIDRQELLDIVESIY 125

Query: 263 -------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                             L    +V R+  + DE+ +G++   EF++G  +
Sbjct: 126 KLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Length = 211

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +     + F  +    SG  ++ EF +L        + N  + +V + FD +++G VDF 
Sbjct: 20  ETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFL 77

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EFI  V+    +   E KLK+ F++YD D +
Sbjct: 78  EFIAAVNLIM-QEKMEQKLKWYFKLYDADGN 107

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Length = 211

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 20/122 (16%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            ++DG ++F EF  I     I ++ +    +L   F+  D D +G++  +E         
Sbjct: 68  TNKDGFVDFLEF--IAAVNLIMQEKMEQ--KLKWYFKLYDADGNGSIDKNELLDMFMAVQ 123

Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDI 320
                  L     +  V    D + +GE+  +EFI G+++       +  L+  ++ +D 
Sbjct: 124 ALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKD------QDLLEIVYKSFDF 177

Query: 321 DN 322
            N
Sbjct: 178 SN 179

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Length = 198

 Score = 89.1 bits (221), Expect = 8e-21
 Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ-----NPLVQRVIDIFDEDRNGEVDFK 292
           +  +  K+F  +    SG L++ EF     L+      N  V+++ + FD +++G +DF 
Sbjct: 15  ECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFM 72

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           E++  +S    KG  + KL++ F++YD+D +
Sbjct: 73  EYVAALSLVL-KGKVDQKLRWYFKLYDVDGN 102

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Length = 198

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            ++DG I+F E+  +   + + K  V    +L   F+  D+D +G +   E         
Sbjct: 63  FNKDGYIDFMEY--VAALSLVLKGKVDQ--KLRWYFKLYDVDGNGCIDRGELLNIIKAIR 118

Query: 263 -MSLPELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
            ++              V D  D + +GE+  +EF++GV +
Sbjct: 119 AINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Length = 145

 Score = 87.0 bits (215), Expect = 1e-20
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 25/143 (17%)

Query: 1   MDRFEY------CSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFW---- 49
           M+ + Y          L   E  +    +V LY G++K  Q QRG + LTS R+ +    
Sbjct: 9   MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 68

Query: 50  -QKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLS 108
                +L L L  +      +     LT   ++IL+                   +V+LS
Sbjct: 69  KPTQNSLGLELDDLAYVNYSSGF---LTRSPRLILFFKDPSSSTE----------FVQLS 115

Query: 109 FREGIQNEFLDALKSTVDAKIWT 131
           FR+     F  A +  ++  +  
Sbjct: 116 FRKSDGVLFSQATERALENILTE 138

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Length = 193

 Score = 86.4 bits (214), Expect = 7e-20
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I+   K F +     SG LS++EF        P    +   + V   FD + +G +DF+
Sbjct: 26  EIQEWYKGFLRDC--PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFR 83

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           EFI  +S  S +G  E KLK+AF +YD+D + 
Sbjct: 84  EFIIALSVTS-RGKLEQKLKWAFSMYDLDGNG 114

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Length = 193

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 20/107 (18%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           + + DG I+F+EF  I+  +   +  +    +L   F   DLD +G +S  E        
Sbjct: 73  DANGDGTIDFREF--IIALSVTSRGKLEQ--KLKWAFSMYDLDGNGYISKAEMLEIVQAI 128

Query: 263 ---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                    M   E       +++    D +R+G++  +EFI+G   
Sbjct: 129 YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Length = 190

 Score = 83.7 bits (207), Expect = 5e-19
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           ++++  K F K     SG L    F        P          V ++FDE+++G ++F 
Sbjct: 26  EVQQWYKGFIKDC--PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFS 83

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           EFIQ +S  S +G  + KL++AF++YD+DND 
Sbjct: 84  EFIQALSVTS-RGTLDEKLRWAFKLYDLDNDG 114

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Length = 190

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 27/129 (20%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           +  ++++DG+I F EF  I   +   +  + +  +L   F+  DLDN G ++ +E     
Sbjct: 70  NVFDENKDGRIEFSEF--IQALSVTSRGTLDE--KLRWAFKLYDLDNDGYITRNEMLDIV 125

Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK 310
                       +   E      V R+  + D++ +G++  +EF +G          +  
Sbjct: 126 DAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSK-------ADPS 178

Query: 311 LKFAFRIYD 319
           +  A  +YD
Sbjct: 179 IVQALSLYD 187

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Length = 229

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +++ L + F+      SG ++ + F  +     P+         + + FD D NG V F+
Sbjct: 65  ELQILYRGFKNEC--PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFE 122

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           +FI+G+S    +G  + KL +AF +YDI+ D 
Sbjct: 123 DFIKGLSILL-RGTVQEKLNWAFNLYDINKDG 153

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Length = 229

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            D +G ++F++F  I G + + +  V +  +L   F   D++  G ++ +E         
Sbjct: 113 TDHNGAVSFEDF--IKGLSILLRGTVQE--KLNWAFNLYDINKDGYITKEEMLDIMKAIY 168

Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                     L E      V+      D++++G V   EFI+   +
Sbjct: 169 DMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Length = 183

 Score = 80.6 bits (199), Expect = 5e-18
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +++ L + F+      SG ++ + F  +     P    +     + + FD  + G V F+
Sbjct: 19  ELQVLYRGFKNEX--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 76

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           +F+  +S    +G    KL++ F +YDI+ D 
Sbjct: 77  DFVTALSILL-RGTVHEKLRWTFNLYDINKDG 107

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Length = 183

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 20/106 (18%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
             + G + F++F   V    I  +  V   +L   F   D++  G ++ +E         
Sbjct: 67  TTQTGSVKFEDF---VTALSILLRGTVH-EKLRWTFNLYDINKDGYINKEEMMDIVKAIY 122

Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                     L E      V       D++++G V   EF++   +
Sbjct: 123 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Length = 190

 Score = 80.6 bits (199), Expect = 7e-18
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 11/114 (9%)

Query: 216 KINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQ 270
           K++  +   +V +T   KK   ++++  K F K     SG L+  EF        P    
Sbjct: 7   KLSQDQLQDLVRSTRFDKK---ELQQWYKGFFKDC--PSGHLNKSEFQKIYKQFFPFGDP 61

Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           +   + V ++FD D+NG +DFKEFI  +S  S +G+   KL +AF++YD+DN+ 
Sbjct: 62  SAFAEYVFNVFDADKNGYIDFKEFICALSVTS-RGELNDKLIWAFQLYDLDNNG 114

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Length = 190

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 27/126 (21%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           + D++G I+F+EF  I   +   +  + D  +L   F+  DLDN+G +S DE        
Sbjct: 73  DADKNGYIDFKEF--ICALSVTSRGELND--KLIWAFQLYDLDNNGLISYDEMLRIVDAI 128

Query: 263 ---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF 313
                    +   E      V ++ ++ D++++G++  +EF +G         R+  +  
Sbjct: 129 YKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK-------RDPTIVS 181

Query: 314 AFRIYD 319
           A  +YD
Sbjct: 182 ALSLYD 187

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Length = 207

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           ++    + F K     +G ++  +F S+     P+       Q V   FD + +G +DFK
Sbjct: 34  ELCSWYQSFLKDC--PTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFK 91

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           E++  +   +  G    KL++AF +YD+D + 
Sbjct: 92  EYVIALHMTT-AGKTNQKLEWAFSLYDVDGNG 122

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Length = 207

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 22/109 (20%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL---- 265
           + + DG ++F+E+   +  T   K      ++L   F   D+D +G +S +E + +    
Sbjct: 81  DSNLDGTLDFKEYVIALHMTTAGKTN----QKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136

Query: 266 --------------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                          E       +++   F ++ + ++  KEFI+G   
Sbjct: 137 FKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Length = 224

 Score = 79.6 bits (196), Expect = 3e-17
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +++ L + F+      SG ++ + F  +     P    +     + + FD  + G V F+
Sbjct: 52  ELQVLYRGFKNEC--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 109

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           +F+  +S    +G    KL++ F +YDI+ D 
Sbjct: 110 DFVTALSILL-RGTVHEKLRWTFNLYDINKDG 140

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Length = 224

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 210 NKDRDGKINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           +  + G + F++F    SI+    +H+K       L   F   D++  G ++ +E     
Sbjct: 99  DTTQTGSVKFEDFVTALSILLRGTVHEK-------LRWTFNLYDINKDGYINKEEMMDIV 151

Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                         L E      V       D++++G V   EF++   +
Sbjct: 152 KAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Length = 190

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I++  K F +     SG L+ ++F+       P          +  +FD+D NG + F+
Sbjct: 26  EIQQWHKGFLRDC--PSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFE 83

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           EFI  +S  S +G  E KL +AF +YD+++D 
Sbjct: 84  EFITVLSTTS-RGTLEEKLSWAFELYDLNHDG 114

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Length = 190

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 33/129 (25%)

Query: 210 NKDRDGKINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           +KD +G I+F+EF    S      + +K       L   F   DL++ G ++ DE     
Sbjct: 73  DKDNNGFIHFEEFITVLSTTSRGTLEEK-------LSWAFELYDLNHDGYITFDEMLTIV 125

Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK 310
                       ++  E      V+++  + D++ +G +   EF +G          +  
Sbjct: 126 ASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK-------VDPS 178

Query: 311 LKFAFRIYD 319
           +  A  +YD
Sbjct: 179 IIGALNLYD 187

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Length = 256

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +++ L + F+      +G +  D F        P+         + + FD D NG + F+
Sbjct: 92  ELQSLYRGFKNEC--PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFE 149

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           +F+ G+S    +G    KLK+AF +YDI+ D 
Sbjct: 150 DFVVGLSILL-RGTVHEKLKWAFNLYDINKDG 180

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Length = 256

 Score = 49.7 bits (118), Expect = 6e-07
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 25/166 (15%)

Query: 156 RNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDD-----SN 210
             +  + K T   + + ++             +  K I ++   +    T         +
Sbjct: 80  DQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFD 139

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            D +G I+F++F  +VG + + +  V +  +L   F   D++  G ++ +E         
Sbjct: 140 ADGNGAIHFEDF--VVGLSILLRGTVHE--KLKWAFNLYDINKDGCITKEEMLAIMKSIY 195

Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                     L E      V+R     D +++G V   EF++   +
Sbjct: 196 DMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVIDIFDEDRNGEVDFKEFI 295
           ++ RL   F   D + SG L  +EF +L  EL+  P   + V    D DR+G + F+EF 
Sbjct: 25  ELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFA 84

Query: 296 QG 297
           +G
Sbjct: 85  RG 86

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Length = 263

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 26/164 (15%)

Query: 186 MVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIVGNTD-----IHKKMVVD 238
           + E+ +      +    E+    D   +  DGKI   E   ++   +        + +  
Sbjct: 42  IQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKS 101

Query: 239 IRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQRVIDIFDEDRN 286
                K +RK D D+SG +  +E              ++ + +       ++ +FD + +
Sbjct: 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNND 161

Query: 287 GEVDFKEFIQ-------GVSQFSVKGDRESKLKFAFRIYDIDND 323
           G+++  E  +        + +F        +   AF +YD D +
Sbjct: 162 GKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGN 205

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Length = 263

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 18/96 (18%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNP---------LVQRVIDIFDEDRNGEVDFKEFI 295
           +   D D SG L   E    + EL Q            ++  +D + +  +G++   E  
Sbjct: 22  WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELA 81

Query: 296 QGVSQFSV--------KGDRESKLKFAFRIYDIDND 323
             +             +     +    +R YD D+ 
Sbjct: 82  HVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHS 117

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Length = 263

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 21/141 (14%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 170 NNAFKDLNQLMSMAKEMVE-ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGN 228
           ++ F +  +L +  K+++E  +K + +  +    ++     + + DGK+   E   ++  
Sbjct: 116 HSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV 175

Query: 229 TD----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL---------PELQQNPLVQ 275
            +      + + +  +   K F   D D +G +  +E  +L          EL  N +  
Sbjct: 176 QENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST 235

Query: 276 RVIDIFDEDRNGEVDFKEFIQ 296
              +I      G++   +   
Sbjct: 236 YKKNIMALSDGGKLYRTDLAL 256

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
            +++ ++    ++ I     +        D  G++++    +          +  D+  L
Sbjct: 141 FQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVA----------VANDLAAL 190

Query: 243 GKRFRKLDLDNSGALSIDEFMS-LPELQQN--PLVQRVIDIFDEDRNGEVDFKEFIQGVS 299
              FRK+D +++G LS  EF      L  +   +   +    DED + +V F E++    
Sbjct: 191 VADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGL 250

Query: 300 QFSVKGDRESKLKFAFRIYDIDND 323
                      L+  +   D D  
Sbjct: 251 C-------LLVLRILYAFADFDKS 267

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
               D  +D    + F E+            + + +  L   +   D D SG LS +E  
Sbjct: 229 FRYAD--EDESDDVGFSEYV----------HLGLCLLVLRILYAFADFDKSGQLSKEEVQ 276

Query: 264 SL-----PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +              +    + D D +  + ++EF+ 
Sbjct: 277 KVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVM 314

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
            + +G ++ +EF          KK V D       FR  D D S  +   E++ L     
Sbjct: 199 TNSNGTLSRKEFREHFVRLGFDKKSVQD-----ALFRYADEDESDDVGFSEYVHLGLCLL 253

Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
              ++ +    D D++G++  +E  + +    +      K +  F + D+D+ 
Sbjct: 254 V--LRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDS 304

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
           I+ L + FR+LD D S +L  DEF   L +L         + V   +D + +G +D +EF
Sbjct: 36  IQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95

Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           ++ +    +   RE+ +  AF   D   D
Sbjct: 96  LRALRP-PMSQAREAVIAAAFAKLDRSGD 123

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 20/113 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
           ++  G ++ +EF   +               +   F KLD    G +++D+   +   + 
Sbjct: 84  RNGSGTLDLEEFLRAL----RPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRA 139

Query: 271 NPLV-----------QRVIDIFDE-DRNGEVDFKEFIQ---GVSQFSVKGDRE 308
           +P V           +R +D FD  +++G+V   EF     GVS  S+  D E
Sbjct: 140 HPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSA-SMNTDEE 191

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLP 266
           K+  G+I F EF            +   I  + + FRK D    G L  +E     +S  
Sbjct: 74  KNHSGEITFDEFKD----------LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSG 123

Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
                   Q ++  FD  R G + F ++++             +++  F  YD +  
Sbjct: 124 YQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI-------FVCRVRNVFAFYDRERT 173

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           FR +D D SGA+S+ E  + L            ++++ ++D++ +GE+ F EF       
Sbjct: 33  FRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHH-- 90

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
                    ++  FR  D   D
Sbjct: 91  -----FILSMREGFRKRDSSGD 107

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 29/124 (23%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRK---------LDLDNSGALSIDE 261
            D  G I+  E  +              +   G  F            D ++SG ++ DE
Sbjct: 38  TDGSGAISVPELNAA-------------LSSAGVPFSLATTEKLLHMYDKNHSGEITFDE 84

Query: 262 FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR--ESKLKFAFRIYD 319
           F  L     +  ++      D   +G +D  E    +      G +  E   +   R +D
Sbjct: 85  FKDLHHFILS--MREGFRKRDSSGDGRLDSNEVRAALLSS---GYQVSEQTFQALMRKFD 139

Query: 320 IDND 323
               
Sbjct: 140 RQRR 143

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSID--EFMSL 265
           + R G + F ++           ++ + + R+   F   D + +G ++     F+  
Sbjct: 140 RQRRGSLGFDDYV----------ELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGG 186

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 26/181 (14%), Positives = 70/181 (38%), Gaps = 30/181 (16%)

Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTD-- 230
            K+L+       + ++    I+++ + +  +      +   DG++  +E  +++   +  
Sbjct: 30  GKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEEN 89

Query: 231 -----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPL 273
                  +  + +     K +RK D D+SG +S  E               +P  + +  
Sbjct: 90  FLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEY 149

Query: 274 VQRVIDIFDEDRNGEVDFKEFIQGVS-----------QFSVKGDRESKLKFAFRIYDIDN 322
              ++ IFD++++G +D  +  + ++             S + +R+   +  F  YD+  
Sbjct: 150 TDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSR 209

Query: 323 D 323
            
Sbjct: 210 T 210

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 182 MAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTD--------IHK 233
           +    ++  K I    ++   +      +K++DG+++  +   I+   +           
Sbjct: 130 LKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDAS 189

Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFM----SLPELQQNPL--------VQRVIDIF 281
             V   R   K F   D+  +GAL   E       + EL +  +         + ++   
Sbjct: 190 SQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHC 249

Query: 282 DEDRNGEVDFKEFIQ 296
           D +++G++   E   
Sbjct: 250 DMNKDGKIQKSELAL 264

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 24/111 (21%)

Query: 237 VDIRRLGKRFRKLDLDNSGALSIDEFMS--------------LPELQQNPLVQRVIDIFD 282
           +D     + ++  D D++G +   E                 + + +   + +  +  +D
Sbjct: 8   LDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYD 67

Query: 283 EDRNGEVDFKEFIQGVSQFSV----------KGDRESKLKFAFRIYDIDND 323
              +G +  +E    +                 D   +    +R YD D+ 
Sbjct: 68  ATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSS 118

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Length = 180

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDRNGEVDFKEFI 295
            I+ + + F KLD +++G+LS  E  + L  +      + R++   D +  G + + EF+
Sbjct: 37  HIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFM 96

Query: 296 QGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
            G  +   K    + LK AF   D D D      D    + ++++
Sbjct: 97  AGCYR--WKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVL 139

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Length = 180

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL--PEL 268
            +  G I + EF +       ++   ++   L   F K+D D  G +S  + +SL   ++
Sbjct: 84  INDRGNITYTEFMAG-----CYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV 138

Query: 269 QQNPLVQRVIDIFDEDRNG--------EVDFKEFIQ 296
             N  +          + G        ++ F+EF  
Sbjct: 139 LDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKD 174

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 19/104 (18%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPEL-------------QQNPLVQRVIDIFDEDR 285
           +R++  R +++D+   G +S +++  +                +      RV D      
Sbjct: 13  LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72

Query: 286 NGEVDFKEFIQGVSQFSVKGD------RESKLKFAFRIYDIDND 323
              +  +E     +   +K           +    +   D D D
Sbjct: 73  GVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKD 116

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 17/150 (11%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 174 KDLNQLMSMAKEMVEISKNISNKIINR-QGEITEDDSNKDRDGKINFQEFCSIVGN---T 229
           +D   +     ++ ++S   + +          +         +I+ +E      +    
Sbjct: 34  EDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG--LAPGVRISVEEAAVNATDSLLK 91

Query: 230 DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDR 285
              ++  + + +    +  +D D  G +S+ EF     ++     +       +  D ++
Sbjct: 92  MKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNK 151

Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAF 315
           NG++   EF+  V+ F    +  +     +
Sbjct: 152 NGQISRDEFLVTVNDFLFGLEETALANAFY 181

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 211 KDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
              DG I+ +++         I   +    +         +   +L L     +S++E  
Sbjct: 25  VTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQE--FLRVADQLGLAPGVRISVEEAA 82

Query: 264 SL-----------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK 312
                         +         + D  D D++G V   EF   +         + K  
Sbjct: 83  VNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDD-KAI 141

Query: 313 FAFRIYDIDND 323
             F   D + +
Sbjct: 142 TCFNTLDFNKN 152

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Length = 172

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 21/117 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLP 266
           ++    +NF EF            +   I      FR  D DNSG +  +E         
Sbjct: 55  RENKAGVNFSEFTG----------VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 104

Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
               +     +I  FD    G++ F +FIQG            +L   FR YD D D
Sbjct: 105 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI-------VLQRLTDIFRRYDTDQD 154

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Length = 172

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRVIDIFDEDRNGEVDFK 292
           D   L   F+++D D SG +S  E    L      P     V+ +I +FD +    V+F 
Sbjct: 5   DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EF              +  +  FR YD DN 
Sbjct: 65  EFTGVWK-------YITDWQNVFRTYDRDNS 88

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Length = 172

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
           KDR G I+  E    + N        V +R +       D +N   ++  EF  + +   
Sbjct: 18  KDRSGVISDTELQQALSNGTWTPFNPVTVRSI---ISMFDRENKAGVNFSEFTGVWKYIT 74

Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR--ESKLKFAFRIYDIDND 323
           +   Q V   +D D +G +D  E  Q +S F   G R  +       R +D    
Sbjct: 75  D--WQNVFRTYDRDNSGMIDKNELKQALSGF---GYRLSDQFHDILIRKFDRQGR 124

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Length = 134

 Score = 62.5 bits (153), Expect = 4e-12
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F+++D++  GA+S +E  + + + +       +Q +    D D NGE+D  EF +     
Sbjct: 6   FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65

Query: 302 SV--KGDRESKLKFAFRIYDIDND 323
                 D +  LK  +++ D+D D
Sbjct: 66  QGQDLSDDKIGLKVLYKLMDVDGD 89

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Length = 134

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
            D +G+I+  EF    G+    + +  D   L   ++ +D+D  G L+ +E  S  +   
Sbjct: 47  ADGNGEIDQNEFAKFYGSI-QGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG 105

Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
              V   +   D + +G +  +EF++
Sbjct: 106 IEKVAEQVMKADANGDGYITLEEFLE 131

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Length = 208

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 23/108 (21%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL-------------VQRVIDIFDEDR 285
           + RL KRF   DLD+ G + +DE +  P+  +  +             V+        + 
Sbjct: 35  LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94

Query: 286 NGEVDFKEFIQGVSQFSVKGDRESK----------LKFAFRIYDIDND 323
              +  +++++    F+       +              + + D D D
Sbjct: 95  VNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGD 142

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Length = 208

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 13/139 (9%), Positives = 42/139 (30%), Gaps = 12/139 (8%)

Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINR-QGEITEDDSNKDRDGKINFQEFCSIVGNTDI 231
             ++       +++V  +     K+ +  +          +    +  +++         
Sbjct: 55  MDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKG--VEPVNGLLREDWVEANRVFAE 112

Query: 232 HKKMVVDIRRLGKR-------FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFD 282
            ++                  +  LD D  G + +DE  + +              +  D
Sbjct: 113 AERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKAD 172

Query: 283 EDRNGEVDFKEFIQGVSQF 301
            D++G+++  E +    +F
Sbjct: 173 TDKSGKLERTELVHLFRKF 191

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
           +I  L   F  LD+DNSG LS  E +  L ++    +   + +V+   D + +G++ + +
Sbjct: 55  EINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTD 114

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+           ++      F+ +DID +
Sbjct: 115 FLAATIDKQ-TYLKKEVCLIPFKFFDIDGN 143

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLPE 267
            +  G+I++ +F +      I K+  +        F+  D+D +G +S++E        +
Sbjct: 104 SNASGQIHYTDFLAAT----IDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDD 159

Query: 268 LQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           ++   +   +  ++   D + +GE+DF EF+ 
Sbjct: 160 IENPLIDKAIDSLLQEVDLNGDGEIDFHEFML 191

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Length = 179

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDE--- 261
           ++ + D +G I+F EF ++     + +KM        + + FR  D D +G +S  E   
Sbjct: 54  NEVDADGNGTIDFPEFLTM-----MARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108

Query: 262 -FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK---LKFAFRI 317
              +L E   +  V  +I   D D +G+V+++EF+Q ++     G   ++   ++   R 
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRA 168

Query: 318 YDIDND 323
                 
Sbjct: 169 IGKMAR 174

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Length = 179

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D D  G ++  E    +  L QNP    +Q +I+  D D NG +DF EF+  +++ 
Sbjct: 17  FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
               D E +++ AFR++D D +
Sbjct: 77  MKDTDSEEEIREAFRVFDKDGN 98

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Length = 191

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDRNGEVDFKEF 294
           D+ +L   F  LD D  G ++ ++    L +           ++D  D D +G++D+ EF
Sbjct: 50  DVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEF 109

Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           I        K   +  +  AFR++D+DND
Sbjct: 110 IAAALD--RKQLSKKLIYCAFRVFDVDND 136

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Length = 191

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE----FMSLP 266
            D  GKI++ EF +      + +K +   + +   FR  D+DN G ++  E      +  
Sbjct: 98  SDGSGKIDYTEFIAAA----LDRKQLSK-KLIYCAFRVFDVDNDGEITTAELAHILYNGN 152

Query: 267 ELQQNPL-----VQRVIDIFDEDRNGEVDFKEFIQ 296
           +           V+R+I   D++ +G++DF EF +
Sbjct: 153 KKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPLVQRVIDIFDEDR 285
           + + L   FR +D +  G L   E +                 Q    V  ++   D DR
Sbjct: 344 ETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDR 403

Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNE 333
           NG +D+ EF+            + KL+ AF+ +D D +     D+     G +
Sbjct: 404 NGYIDYSEFVTVAMDRK-SLLSKDKLESAFQKFDQDGNGKISVDELASVFGLD 455

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
             ++ DR+G I++ EF ++     + +K ++   +L   F+K D D +G +S+DE  S+ 
Sbjct: 397 GAADFDRNGYIDYSEFVTVA----MDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVF 452

Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
            L        + +I   D + +G+VDF+EF +
Sbjct: 453 GLDHLESKTWKEMISGIDSNNDGDVDFEEFCK 484

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 210 NKDRDGKINFQEFCS----IVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF--- 262
           +K+ DG+++ QE       + G       +      +       D D +G +   EF   
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV 415

Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
            M    L     ++     FD+D NG++   E       F +        K      D +
Sbjct: 416 AMDRKSLLSKDKLESAFQKFDQDGNGKISVDELAS---VFGLDHLESKTWKEMISGIDSN 472

Query: 322 ND 323
           ND
Sbjct: 473 ND 474

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Length = 219

 Score = 61.1 bits (148), Expect = 7e-11
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 163 KETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEF 222
           K     + +   ++ +L      + +I+K   +K      ++       +  G  +F EF
Sbjct: 64  KLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL-------ENKGSEDFVEF 116

Query: 223 CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRV 277
                   +    + D   L   F ++D   +  +  +EF   +P+L+           +
Sbjct: 117 LEFR----LMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAAL 172

Query: 278 IDIFDEDRNGEVDFKEFIQ 296
               D++  G V F EF  
Sbjct: 173 FKELDKNGTGSVTFDEFAA 191

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Length = 219

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS--LPELQQNPLVQRVIDIF------------DE 283
             +R  + F+K D + +G L  DE  S  L  L+ +    RV DI               
Sbjct: 46  AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL 105

Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           +  G  DF EF++             +L   F   D   +
Sbjct: 106 ENKGSEDFVEFLE-FRLMLCYIYDFFELTVMFDEIDASGN 144

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Length = 219

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR------FRKLDLDNSGALSIDEFMS 264
           K+  GK+ + E  S         +    +R + KR           L+N G+    EF+ 
Sbjct: 59  KNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLE 118

Query: 265 LPELQQNPLVQRVI----DIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDI 320
              +         +    D  D   N  VD +EF + V +    G +       F+  D 
Sbjct: 119 FRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDK 178

Query: 321 DND 323
           +  
Sbjct: 179 NGT 181

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Length = 450

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 201 QGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD----IRRLGKRFRKLDLDNSGA 256
           + E     +  +  G I+F+E  +I+G+   +          I    + F   D D  G 
Sbjct: 270 KFEGDTLVNRIELKG-IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGT 328

Query: 257 LSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK 312
           ++  E    +  L QNP    +Q +I+  D D NG +DF EF+  +++     D E +++
Sbjct: 329 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIR 388

Query: 313 FAFRIYDIDND 323
            AFR++D D +
Sbjct: 389 EAFRVFDKDGN 399

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Length = 450

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 19/102 (18%)

Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV-----VDIRRLGKRFRKLDLDNSGALS 258
           I E D   D +G I+F EF ++     + +KM       +IR     FR  D D +G +S
Sbjct: 354 INEVD--ADGNGTIDFPEFLTM-----MARKMKDTDSEEEIREA---FRVFDKDGNGYIS 403

Query: 259 IDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
             E      +L E   +  V  +I   D D +G+V+++EF+Q
Sbjct: 404 AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 445

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Length = 166

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
           +I  L + F  +D D SG ++ +E    L  +  N     +  ++   D D +G +D+KE
Sbjct: 25  EIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKE 84

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           FI   +    K +RE  L  AF  +D D  
Sbjct: 85  FIA-ATLHLNKIEREDHLFAAFTYFDKDGS 113

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Length = 166

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 18/94 (19%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
            D  G I+++EF +      +H   +     L   F   D D SG ++ DE         
Sbjct: 74  VDNSGTIDYKEFIAAT----LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG 129

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           +    +++      ++   D+D +G +D+ EF+ 
Sbjct: 130 VEDVRIEE------LMRDVDQDNDGRIDYNEFVA 157

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQN-----------PLVQRVIDIFDEDR 285
           + + L   F+KLD +  G L   E +     L+               V  ++   D D+
Sbjct: 353 ERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDK 412

Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
           NG +++ EFI            E +L+ AF ++D D       ++     G   I
Sbjct: 413 NGYIEYSEFISVCMDKQ-ILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSI 466

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
            + + D++G I + EF S+     + K+++    RL + F   D D SG ++ +E  +L 
Sbjct: 406 KEVDFDKNGYIEYSEFISVC----MDKQILFSEERLRRAFNLFDTDKSGKITKEELANLF 461

Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
            L          V+   D++++  +DF EF+ 
Sbjct: 462 GLTSISEKTWNDVLGEADQNKDNMIDFDEFVS 493

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Length = 174

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQN-----PLVQRVIDIF---------DE 283
           ++++   F ++D D  GA++  +F S+ E   +         + ++D             
Sbjct: 5   VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64

Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESK----LKFAFRIYDIDND 323
                +D   FI  + +     + +S     L   FR  D + D
Sbjct: 65  AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNED 108

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Length = 174

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 5/147 (3%)

Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSN-KDRDGKINFQEFCSIVGNTDI 231
             D   +     +  E+    +  +++    + ++          I+   F + +     
Sbjct: 25  RMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVK 84

Query: 232 HKKMVVDIRRLGKR-FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDRNGE 288
           + +    +       FR +D +    +S DE+      L  +  +     D  D + +G 
Sbjct: 85  NPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGL 144

Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAF 315
           +  +EF+   S F +  D +S  K  +
Sbjct: 145 LSLEEFVIAGSDFFM-NDGDSTNKVFW 170

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Length = 174

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 19/129 (14%)

Query: 211 KDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
            D+DG I   +F                H K+++D            +     +    F+
Sbjct: 17  FDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFI 76

Query: 264 SL---------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
           +           +      +       D + +  +   E+      F + G  ++    +
Sbjct: 77  NSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIF---FGMLGLDKTMAPAS 133

Query: 315 FRIYDIDND 323
           F   D +ND
Sbjct: 134 FDAIDTNND 142

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 188

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
           I  L + F+ +D DNSG ++ DE    L  +    +   ++ ++D  D D++G +D+ EF
Sbjct: 9   IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 68

Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           I      + K +RE  L  AF  +D D  
Sbjct: 69  IAATVHLN-KLEREENLVSAFSYFDKDGS 96

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 188

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 27/135 (20%)

Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF- 262
           +   D   D+ G I++ EF +      +H   +     L   F   D D SG +++DE  
Sbjct: 52  MDAAD--IDKSGTIDYGEFIAAT----VHLNKLEREENLVSAFSYFDKDGSGYITLDEIQ 105

Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ------GVSQFSVKGDRES 309
                  +    +        +I   D+D +G++D+ EF        G      +  R++
Sbjct: 106 QACKDFGLDDIHIDD------MIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKT 159

Query: 310 -KLKFAFRIYDIDND 323
             L+ A  + D  ++
Sbjct: 160 LNLRDALGLVDNGSN 174

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS---------------LPELQQNPLVQRVIDIFD 282
           + + L   F K+D +  G L   E +                L        V +V+D  D
Sbjct: 333 ETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVD 392

Query: 283 EDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
            D+NG +++ EF+              +L+ AFR++D DN       +     G   +
Sbjct: 393 FDKNGYIEYSEFVTVAMDRK-TLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 449

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
           D  + D++G I + EF ++     + +K ++   RL + FR  D DNSG +S  E  ++ 
Sbjct: 389 DAVDFDKNGYIEYSEFVTVA----MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIF 444

Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
            +        + V+   D++ +GEVDF EF Q
Sbjct: 445 GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQ 476

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 210 NKDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           +K+ DG+++  E          + G              + +    +D D +G +   EF
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEF 404

Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIY 318
               M    L     ++R   +FD D +G++   E       F V        K      
Sbjct: 405 VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELAT---IFGVSDVDSETWKSVLSEV 461

Query: 319 DIDND 323
           D +ND
Sbjct: 462 DKNND 466

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Length = 176

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 26/111 (23%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQRVID 279
             RL KRF + D D +GAL   +F                  E+Q        L   +  
Sbjct: 6   SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65

Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESK-------LKFAFRIYDIDND 323
                 +G +  ++FI+       +    S        +K    + D + D
Sbjct: 66  EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNAD 116

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Length = 176

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 211 KDRDGKINFQEFCSIVGN----TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-L 265
              DG +  ++F  +  N            V    +       D +  G ++ DEF + L
Sbjct: 69  VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128

Query: 266 PELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
             L  +        +  D + NGE+   E +  V  F
Sbjct: 129 TALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDF 165

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Length = 191

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPL---VQRVIDIFD 282
           + + L + FR+LD +  G L   E +             + +L  + +   V  ++   D
Sbjct: 38  ETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVD 97

Query: 283 EDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
            DRNG +++ EF+              +L  AF+ +D D  
Sbjct: 98  FDRNGYIEYSEFVTVCMDKQ-LLLSRERLLAAFQQFDSDGS 137

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Length = 191

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLPE 267
            DR+G I + EF ++     + K++++   RL   F++ D D SG ++ +E      + E
Sbjct: 98  FDRNGYIEYSEFVTVC----MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE 153

Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           +       +V+   D++ +GEVDF+EF++
Sbjct: 154 VDDE-TWHQVLQECDKNNDGEVDFEEFVE 181

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Length = 191

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 14/137 (10%), Positives = 40/137 (29%), Gaps = 9/137 (6%)

Query: 172 AFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI 231
           A K +  L S   +  + ++  +   +   G     D  ++ D ++  +E+  +      
Sbjct: 38  AIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYAD--ENEDEQVTKEEWLKMWAECVK 95

Query: 232 HKKMVVDIRRLGKR-----FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDED 284
             +    +     +     F   D      +   E+ +                D   + 
Sbjct: 96  SVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDG 155

Query: 285 RNGEVDFKEFIQGVSQF 301
               V  + F +  +++
Sbjct: 156 GKTMVTREIFARLWTEY 172

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Length = 191

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 28/113 (24%)

Query: 239 IRRLGKRFRKL-DLDNSGALSIDEFMSLPE--------LQQNPLVQRVIDIF-------- 281
             ++ + F    D ++ G +  D+F    +                              
Sbjct: 11  RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70

Query: 282 ---DEDRNGEVDFKEFIQGVSQFSVKGDRESK--------LKFAFRIYDIDND 323
              DE+ + +V  +E+++  ++     ++           + F F + D   D
Sbjct: 71  KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGD 123

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D D +G + + E  +++  L   P    ++++I   D++  G+++F +F+  ++Q 
Sbjct: 12  FDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQK 71

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
             + D + ++  AF+++D D  
Sbjct: 72  MSEKDTKEEILKAFKLFDDDET 93

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score = 47.5 bits (114), Expect = 9e-07
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF-- 262
            + +K+  GK+NF +F ++     + +KM     +  + K F+  D D +G +S      
Sbjct: 49  SEIDKEGTGKMNFGDFLTV-----MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKR 103

Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
               L E   +  +Q +ID  D D +GEV  +EF++
Sbjct: 104 VAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 139

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Length = 220

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDRNGEVDFKE 293
              R+ + F  +D D SG L I+E M                R++ IFD D NG + F E
Sbjct: 49  QYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYE 108

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+                   F +      
Sbjct: 109 FMAMYK-------FMELAYNLFVMNARARS 131

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Length = 220

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 20/118 (16%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL- 268
            D +G I+F EF            M   +      F       SG L   E   +L +L 
Sbjct: 98  TDFNGHISFYEF----------MAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLG 147

Query: 269 -QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
              N     ++           D   +I   +       R      A+++  ++    
Sbjct: 148 FYINQRTSLLLHRLFARGMAFCDLNCWIAICAF--AAQTRS-----AYQMIFMNPYYG 198

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Length = 220

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 211 KDRDGKINFQEFCSIVGNTDIH------KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS 264
           +DR G +   E         I        +M+          R  D D +G +S  EFM+
Sbjct: 62  RDRSGTLEINELMMGQFPGGIRLSPQTALRMM----------RIFDTDFNGHISFYEFMA 111

Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           + +  +      +  +    R+G ++  E +  + Q 
Sbjct: 112 MYKFMEL--AYNLFVMNARARSGTLEPHEILPALQQL 146

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A Length = 147

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D DNSG++S  E  + +  L  +P    V  +++  D D N  ++F EF+  +S+ 
Sbjct: 17  FALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ 76

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
               D E +L  AF+++D + D
Sbjct: 77  LKCNDSEQELLEAFKVFDKNGD 98

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A Length = 147

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           ++ + D +  I F EF +++           ++      F+  D +  G +S  E     
Sbjct: 54  NEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEA---FKVFDKNGDGLISAAELKHVL 110

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            S+ E   +  V  ++     D +GE++ K+F  
Sbjct: 111 TSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAA 143

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A Length = 161

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D++N G L   E  +++  L        +  +ID +D +    + + +F   + + 
Sbjct: 29  FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
            +K D   ++K AF+++D D+ 
Sbjct: 89  ILKRDPLDEIKRAFQLFDDDHT 110

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A Length = 161

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           D+ + +    + + +F  ++G   + +  + +I+R    F+  D D++G +SI       
Sbjct: 66  DEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRA---FQLFDDDHTGKISIKNLRRVA 122

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
             L E   +  ++ +I+ FD D +GE++  EFI 
Sbjct: 123 KELGETLTDEELRAMIEEFDLDGDGEINENEFIA 156

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Length = 169

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D D SG +   E  +++  L   P    ++++I   D+D +G +DF+EF+  ++  
Sbjct: 34  FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
             + D   ++  AFR++D DN 
Sbjct: 94  MGERDSREEILKAFRLFDDDNS 115

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Length = 169

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF-- 262
            + +KD  G I+F+EF +++       KM     R  + K FR  D DNSG ++I +   
Sbjct: 71  SEIDKDGSGTIDFEEFLTMMT-----AKMGERDSREEILKAFRLFDDDNSGTITIKDLRR 125

Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
               L E      +Q +I   D + + E+D  EFI+
Sbjct: 126 VAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 161

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF------------------MSLPELQQNPLVQRVID 279
           + ++L + FRKLD +N G L  DE                   +          +  ++ 
Sbjct: 329 ETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMP 388

Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNEL 334
           + D D +G +++ EFI      +       +++ AF+++D D        + ++      
Sbjct: 389 LLDMDGSGSIEYSEFIASAIDRT-ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQAD 447

Query: 335 IAALIEPL 342
            +  +E L
Sbjct: 448 SSIQMEEL 455

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
              + D  G I + EF +      I + +++   R+ + F+  D D SG +S  E   L 
Sbjct: 388 PLLDMDGSGSIEYSEFIASA----IDRTILLSRERMERAFKMFDKDGSGKISTKELFKLF 443

Query: 267 ELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
               + +    ++ +I+  D +++GEVDF EF++
Sbjct: 444 SQADSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 196 KIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR-----FRKLD 250
             +  +    +  ++ ++D  ++++E+ ++   T    K V D+    +      F+ +D
Sbjct: 56  ASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMD 115

Query: 251 LDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           +   G + ++EF +     Q     V  V ++  +      D   + +   + 
Sbjct: 116 VSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 12/113 (10%), Positives = 38/113 (33%), Gaps = 28/113 (24%)

Query: 239 IRRLGKRFRK-LDLDNSGALSIDEFMSLPE--------LQQNPLVQRVIDIF-------- 281
            +++   F   LD+++ G++  ++F  +             +   + +            
Sbjct: 7   KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66

Query: 282 ---DEDRNGEVDFKEFIQGVSQFSVKGDRESK--------LKFAFRIYDIDND 323
              D +++  V ++E++    +        +         + F F+  D+  D
Sbjct: 67  GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGD 119

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Length = 166

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 25/109 (22%)

Query: 240 RRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQRVIDI 280
           RR+  RF   D D +G +   +F                    Q        L Q +  I
Sbjct: 4   RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63

Query: 281 FDEDRNGEVDFKEFIQGVSQFSVKGDRESK------LKFAFRIYDIDND 323
            D D +  +  +EF+ G  +                L  A  + D D D
Sbjct: 64  ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGD 112

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Length = 166

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 211 KDRDGKINFQEFCSIVGN---TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LP 266
           +D D +I  +EF +           +   +    L       D D  GA+++ +    L 
Sbjct: 66  RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125

Query: 267 ELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
                  L ++     D D +G+V   E +   +++
Sbjct: 126 AFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 142

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D + +G ++ +   + L +            + +  D   NG++ F EF+  + + 
Sbjct: 12  FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR 71

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
             +   E  L+ AFR +D +  
Sbjct: 72  MKQTTSEDILRQAFRTFDPEGT 93

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 142

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 18/99 (18%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDE 261
           ++++   +GKI F EF S++G     ++M        +R+    FR  D + +G +    
Sbjct: 49  NEADATGNGKIQFPEFLSMMG-----RRMKQTTSEDILRQA---FRTFDPEGTGYIPKAA 100

Query: 262 F----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                ++L +  +       + I + +  G++ +  FI 
Sbjct: 101 LQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFIN 138

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Length = 148

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D D  G ++  E    +  L QNP    +Q +I+  D D NG +DF EF+  +++ 
Sbjct: 16  FALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 75

Query: 302 SVKGDRESKLKFAFRIYDIDND 323
             + D E +L  AF+++D D +
Sbjct: 76  MKEQDSEEELIEAFKVFDRDGN 97

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Length = 148

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDE 261
           ++ + D +G I+F EF S+     + +KM       ++      F+  D D +G +S  E
Sbjct: 53  NEVDADGNGTIDFPEFLSL-----MARKMKEQDSEEELIEA---FKVFDRDGNGLISAAE 104

Query: 262 F----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                 +L E   +  V  +I   D D +G ++++EF++
Sbjct: 105 LRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVR 143

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Length = 191

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 24/109 (22%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDRNG-- 287
           I R    F  LD++++G +S+DE +       +  L   P      +          G  
Sbjct: 15  IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 74

Query: 288 ---EVDFKEFIQGVSQFSV----------KGDRESKLKFAFRIYDIDND 323
              E D+  +I+G  + +                      F I D D +
Sbjct: 75  YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQN 123

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Length = 191

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 11/115 (9%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVG-------NTDIHKKMVVDIRRLGKRFRKLDLDNSG 255
           E     +      + ++  +                  +  +        F  +D D +G
Sbjct: 65  EAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNG 124

Query: 256 ALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD 306
           A+++DE+     +   +Q +   +    + D D +G++D  E  +    F    D
Sbjct: 125 AITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMD 179

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Length = 198

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 31/121 (25%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
           +D  G + F EF          K++   +    + F   D D SG +   E         
Sbjct: 84  RDMSGTMGFNEF----------KELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMG 133

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
             L     N + +R         NG++ F ++I           +   L  +FR  D   
Sbjct: 134 FRLSPQAVNSIAKRY------STNGKITFDDYIACCV-------KLRALTDSFRRRDTAQ 180

Query: 323 D 323
            
Sbjct: 181 Q 181

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Length = 198

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 16/89 (17%)

Query: 244 KRFRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEF 294
             +        G +  DE    L +               + ++ + D D +G + F EF
Sbjct: 36  YGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95

Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
            +  +         +  +  F  +D D  
Sbjct: 96  KELWA-------VLNGWRQHFISFDTDRS 117

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Length = 198

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
             +GKI F ++ +            V +R L   FR+ D    G      D+F+  
Sbjct: 149 STNGKITFDDYIA----------CCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQC 194

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Length = 105

 Score = 52.1 bits (125), Expect = 9e-09
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 231 IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRN 286
           +HK +      + + F   D   +  +S +EF ++   +   L      R+ +    +  
Sbjct: 15  LHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK 74

Query: 287 GEVDFKEFIQGVSQFSVKGDRES 309
           G + + +F   +S+FS +     
Sbjct: 75  GRLKYPDF---LSRFSSETAATP 94

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Length = 162

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           F   D D  G +S  E    +  L QNP    +  +I+  DED +G +DF+EF+  + + 
Sbjct: 26  FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85

Query: 302 ---SVKGDRESKLKFAFRIYDIDND 323
                KG  E +L   FRI+D + D
Sbjct: 86  MKEDAKGKSEEELANCFRIFDKNAD 110

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Length = 162

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSL 265
           ++ ++D  G I+F+EF  ++               L   FR  D +  G + I+E    L
Sbjct: 63  EEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEIL 122

Query: 266 PELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
               ++     ++ ++   D++ +G +DF EF++
Sbjct: 123 RATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Length = 109

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 202 GEITEDDSNK-----DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA 256
           G + + D        +     N++ F + VG T    K   DI+   K F  +D D SG 
Sbjct: 5   GILADADVAAALKACEAADSFNYKAFFAKVGLT---AKSADDIK---KAFFVIDQDKSGF 58

Query: 257 LSIDE---FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
           +  DE   F+ +       L     +  +   D D +G +   E+  
Sbjct: 59  IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAA 105

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Length = 109

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           +     ++K F   V            +K AF + D D  
Sbjct: 20  EAADSFNYKAFFAKVGL---TAKSADDIKKAFFVIDQDKS 56

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Length = 135

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSL 265
            ++      +  +++   ++      ++ V ++ +    F  L       ++ +    + 
Sbjct: 10  LETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKG---FSLLADPERHLITAESLRRNS 66

Query: 266 PELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQGVSQFS--VKGDRESKLKFAF 315
             L    +     Q ++   D D +G ++  EF   + + S  +  D E+ L+ A 
Sbjct: 67  GILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKAL 122

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Length = 135

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 5/53 (9%), Positives = 18/53 (33%)

Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
            P  + ++         E  +++ +  +++     +  S+L   F +      
Sbjct: 2   EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPER 54

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Length = 108

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           +I               Q+F    G +   K     ++     FR +D D SG L  DE 
Sbjct: 10  DIAAALQECQDPDTFEPQKFFQTSGLS---KMSASQVK---DIFRFIDNDQSGYLDGDEL 63

Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
             F+   +     L     + ++D  D D +G++   EF +
Sbjct: 64  KYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQE 104

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Length = 109

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE-------FMS 264
                 + ++F  +VG     KK   D++   K F  LD D SG +  DE       F S
Sbjct: 19  TAADSFDHKKFFQMVGLK---KKSADDVK---KVFHILDKDKSGFIEEDELGSILKGFSS 72

Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                     + ++   D+D +G++  +EF  
Sbjct: 73  DARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 78/558 (13%), Positives = 153/558 (27%), Gaps = 170/558 (30%)

Query: 1   MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITL----- 55
              +      L  D     K++  RL   +   + ++  L L        K++ +     
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLRQALLELRPA-----KNVLIDGVLG 160

Query: 56  ----CLALSYIQNAVEEAKSMFN---LTAGRK-----IILYL----SKAVPGKNLGPSAT 99
                +AL    +   + K  F    L          ++  L     +  P        +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 100 SAYDYVKLSFREGIQNEF-----------LDALKSTVDAKIW-----------TVQNKSA 137
           S       S +  ++              L  ++   +AK W           T + K  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQV 277

Query: 138 QQTKLREIKTRTGIVGIERNIVEKQKET----SSNINNAFKDLNQLMSMAKEMVEIS-KN 192
             T      T T I     ++     E        ++   +DL       +E++  + + 
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRR 329

Query: 193 ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD 252
           +S  II    E         RDG   +  +          K   V+  +L     +  L+
Sbjct: 330 LS--II---AE-------SIRDGLATWDNW----------KH--VNCDKL-TTIIESSLN 364

Query: 253 NSGALSIDE----FMSLPELQQNPLVQRVIDIFDEDRN----------GEVDFKEFIQGV 298
               L   E    F  L              +F    +           +V   + +  V
Sbjct: 365 V---LEPAEYRKMFDRLS-------------VFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 299 SQFSVKG--DRESKLKFAFRIYDIDND----DDYYQALGNELIAALIEPLTSAGGTMLLT 352
           ++       +++ K +    I  I  +     +   AL   ++     P T     ++  
Sbjct: 409 NKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 353 --DAY---------CRINRARGLELLSPEDLLNSCLALD------KLPDSPIYLKTYSSG 395
             D Y           I     + L          + LD      K+           S 
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 396 VKVLQ-LKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR 454
           +  LQ LK  +   ++        + V   +  F      +L+ +K+  LL         
Sbjct: 521 LNTLQQLKFYKP--YICDNDPKYERLV-NAILDFLPKIEENLICSKYTDLL--------- 568

Query: 455 DQSIEGLRFYENKFLLEE 472
            +    L   E++ + EE
Sbjct: 569 -RI--AL-MAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 33/230 (14%), Positives = 69/230 (30%), Gaps = 53/230 (23%)

Query: 275 QRVIDIFDEDRNGEVDFK---EFIQGV-SQFSVK-----GDRESKLKFAFRIYDIDNDDD 325
           + ++ +F++      D K   +  + + S+  +       D  S     F       ++ 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 326 YYQALGNELIAA---LIEPL-TSAGGTMLLTDAY--CR--------------INRAR--- 362
             + +   L      L+ P+ T      ++T  Y   R              ++R +   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 363 ----GLELLSPEDLL---------NSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASF 409
                L  L P   +          + +ALD      +        +  L LK+C     
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPET 197

Query: 410 V----EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRL--LLAETHGKLC 453
           V    +K    +  N     +  S +  + +   +  L  LL     + C
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENC 246

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Length = 153

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           FR+ D D  G ++  +    +  +   P    +  +    + +  G VDF +F++ +   
Sbjct: 17  FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPK 76

Query: 302 SVKGDRESK----LKFAFRIYDIDND 323
            +    +      L+ AFR +D + D
Sbjct: 77  LLAETADMIGVKELRDAFREFDTNGD 102

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Length = 153

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 207 DDSNKDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
              N +  G ++F +F  ++G            V ++R     FR+ D +  G +S  E 
Sbjct: 54  QQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDA---FREFDTNGDGEISTSEL 110

Query: 263 -MSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
             ++  L  + +    ++ +I   D + +G VDF+EF++
Sbjct: 111 REAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVR 149

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Length = 108

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           ++    +          +EF + VG         +D   + K F  +D D SG +  DE 
Sbjct: 10  DVAAALAACSAADSFKHKEFFAKVG----LASKSLD--DVKKAFYVIDQDKSGFIEEDEL 63

Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
             F+         L     +  +   D+D +G +   EF  
Sbjct: 64  KLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAA 104

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Length = 108

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 3/40 (7%)

Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
                   KEF   V            +K AF + D D  
Sbjct: 19  SAADSFKHKEFFAKVGL---ASKSLDDVKKAFYVIDQDKS 55

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A Length = 173

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 20/116 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL- 268
            D  GK+ F+EF          K +  +I++    +++ D+D SG +   E   +     
Sbjct: 58  SDTTGKLGFEEF----------KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG 107

Query: 269 -QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
              N  +  +I     D  G +DF  FI  +        R   +  AF+  D D  
Sbjct: 108 FHLNEHLYSMIIRRYSDEGGNMDFDNFISCLV-------RLDAMFRAFKSLDKDGT 156

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A Length = 108

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE---FMSLPEL 268
                 + ++F  I G +   KK    ++   + FR LD D SG +  DE   F+   E 
Sbjct: 19  QAPDSFSPKKFFQISGMS---KKSSSQLK---EIFRILDNDQSGFIEEDELKYFLQRFES 72

Query: 269 QQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
               L     +  +   D D +G++  +EF +
Sbjct: 73  GARVLTASETKTFLAAADHDGDGKIGAEEFQE 104

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Length = 158

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR-LGKRFRKLDLDNSGALSIDEF-MS 264
           D+ +   +G I+F  F  I       +     +++ L + FR  D + +G +S D     
Sbjct: 57  DEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREI 116

Query: 265 LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           L EL +      +  +ID  D D +G VDF+EF+ 
Sbjct: 117 LAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMG 151

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Length = 158

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 246 FRKLD-LDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
           FR  +  + SG +S D+  + L  L        ++++ID FD   NG++DF  F    ++
Sbjct: 19  FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGAR 78

Query: 301 F----SVKGDRESKLKFAFRIYDIDND 323
           F          + +L+ AFR+YD + +
Sbjct: 79  FLGEEVNPEQMQQELREAFRLYDKEGN 105

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
           F+++D++  GA+S +E  +    ++       +Q +    D D NGE+D  EF +
Sbjct: 6   FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD--DYYQAL 330
           + + +    D + +G V ++E    VS+       E  L+  F+  D D +   D     
Sbjct: 1   MAEALFKEIDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQ---- 55

Query: 331 GNELIAAL 338
            NE     
Sbjct: 56  -NEFAKFY 62

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
            + DG ++++E  + V      K     ++ +   F+ +D D +G +  +EF   
Sbjct: 11  VNGDGAVSYEEVKAFVSKKRAIKNEQ-LLQLI---FKSIDADGNGEIDQNEFAKF 61

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Length = 148

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVG----NTDIHKKMVV-DIRRLGKRFRKLDLDNSGAL 257
           +I   DS+      +   +   ++       D   K    D     K F+  D +++G +
Sbjct: 44  DIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFV---KAFQVFDKESTGKV 100

Query: 258 SIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           S+ +       L E   +  V  ++   + D NGE+D+K+FI+
Sbjct: 101 SVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 143

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Length = 148

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVID-IFDEDRNGEVDFKEFIQGVSQ 300
           F   D    GA++ D     L  +  NP    VQ +I+          +   +    +  
Sbjct: 10  FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEV 69

Query: 301 FSVKGDRESK-----LKFAFRIYDIDND 323
              + D  +K        AF+++D ++ 
Sbjct: 70  NEKELDATTKAKTEDFVKAFQVFDKEST 97

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Length = 110

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE---FMSLPEL 268
             +G  N ++F ++VG     K M  +   + K F+ +D D SG +  +E    +     
Sbjct: 20  KAEGSFNHKKFFALVG----LKAMSAN--DVKKVFKAIDADASGFIEEEELKFVLKSFAA 73

Query: 269 QQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
               L     +  +   D+D +G++   EF  
Sbjct: 74  DGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Length = 110

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)

Query: 277 VIDIFDE-DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           +    D     G  + K+F   V     K    + +K  F+  D D  
Sbjct: 12  IKKALDAVKAEGSFNHKKFFALVGL---KAMSANDVKKVFKAIDADAS 56

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Length = 165

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 31/121 (25%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
           +D  GK+ F  F          K++   +    + F  +D D SG +   E         
Sbjct: 51  RDHTGKMGFNAF----------KELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMG 100

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
             L       +V+R        +NG + F +++           +   L   FR  D   
Sbjct: 101 YRLSPQTLTTIVKRY------SKNGRIFFDDYVACCV-------KLRALTDFFRKRDHLQ 147

Query: 323 D 323
            
Sbjct: 148 Q 148

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Length = 165

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 17/87 (19%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQ 296
           F  +     G +  +E    L +   N           + +I + D D  G++ F  F +
Sbjct: 6   FSAVA-GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKE 64

Query: 297 GVSQFSVKGDRESKLKFAFRIYDIDND 323
                       +  K  F   D D  
Sbjct: 65  LW-------AALNAWKENFMTVDQDGS 84

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Length = 195

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 24/109 (22%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDRNG-- 287
           I+R    F  LD++ +G +++DE +S        +L+  P      +V         G  
Sbjct: 19  IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78

Query: 288 ---EVDFKEFIQGVSQFSVKGDRES----------KLKFAFRIYDIDND 323
              E+ F +F+ G  Q +    ++                F I+D D  
Sbjct: 79  YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGS 127

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Length = 195

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKR-----FRKLDLDNSG 255
           E        +   +I F +F        T   KK   +   L +      F   D D SG
Sbjct: 69  EAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSG 128

Query: 256 ALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES 309
            +++DE+                +      D D  G++D  E  +    F    D E+
Sbjct: 129 TITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDPEA 186

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} PDB: 2kqy_A Length = 109

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           +I    S+       N++ F S VG          D  ++ K F  LD D SG +  +E 
Sbjct: 11  DIESALSSCQAADSFNYKSFFSTVG----LSSKTPD--QIKKVFGILDQDKSGFIEEEEL 64

Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
             F+         L     +  +   D D +G++  +EF  
Sbjct: 65  QLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQS 105

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Length = 161

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
           D+ ++D  G ++F EF  ++  +            L   FR  D +  G + ++E     
Sbjct: 62  DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIML 121

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +  E      ++ ++   D++ +G +D+ EF++
Sbjct: 122 QATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Length = 161

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 246 FRKLDLD-NSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
           F    L    G++S  E    +  L QNP    +Q +ID  DED +G VDF EF+  + +
Sbjct: 24  FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR 83

Query: 301 FSV---KGDRESKLKFAFRIYDIDND 323
                 KG  E +L   FR++D + D
Sbjct: 84  SMKDDSKGKSEEELSDLFRMFDKNAD 109

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 87

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 20/93 (21%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDEFMS-L 265
              G I+  +           K M       +I  L + F+ +D DNSG ++ DE    L
Sbjct: 1   HSSGHIDDDD-----------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGL 49

Query: 266 PELQQNPL---VQRVIDIFDEDRNGEVDFKEFI 295
             +    +   ++ ++D  D D++G +D+ EFI
Sbjct: 50  KRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 31/121 (25%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
           +D  G + F EF          K++   +    + F   D D SG +   E         
Sbjct: 53  RDMSGTMGFNEF----------KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMG 102

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
             L     N + +R         +G++ F ++I           +   L  +FR  D   
Sbjct: 103 FRLNPQTVNSIAKRY------STSGKITFDDYIACCV-------KLRALTDSFRRRDSAQ 149

Query: 323 D 323
            
Sbjct: 150 Q 150

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 17/87 (19%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQ 296
           F  +     G +  DE    L +               + ++ + D D +G + F EF +
Sbjct: 8   FASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKE 66

Query: 297 GVSQFSVKGDRESKLKFAFRIYDIDND 323
             +         +  +  F  +D D  
Sbjct: 67  LWA-------VLNGWRQHFISFDSDRS 86

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Length = 109

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           +I +  S     G  +++ F  +VG      K    ++   + F  LD D SG +  +E 
Sbjct: 10  DINKAISAFKDPGTFDYKRFFHLVGLK---GKTDAQVK---EVFEILDKDQSGFIEEEEL 63

Query: 262 --FMSLPELQQNPLVQRVIDIF----DEDRNGEVDFKEFIQ 296
              +         L            D D +G++   EF +
Sbjct: 64  KGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAK 104

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Length = 109

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           I      G  D+K F   V     KG  ++++K  F I D D  
Sbjct: 15  ISAFKDPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQS 55

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Length = 143

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 211 KDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
            +  G INF  F ++ G     TD        IR     F   D + SG +  D      
Sbjct: 50  SEAPGPINFTMFLTMFGEKLNGTDPED----VIRNA---FACFDEEASGFIHEDHLRELL 102

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            ++ +   +  V  +      D+ G  ++ EF +
Sbjct: 103 TTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTR 136

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Length = 143

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
           F  +D +  G +  ++    L  + +NP  + +  +   +  G ++F  F+    +    
Sbjct: 13  FNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGM-MSEAPGPINFTMFLTMFGEKLNG 71

Query: 305 GDRESKLKFAFRIYDIDND 323
            D E  ++ AF  +D +  
Sbjct: 72  TDPEDVIRNAFACFDEEAS 90

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Length = 166

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
           F  +D +  G +  D+   +   + +  +    +D   ++ +G ++F  F+    +    
Sbjct: 31  FTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 90

Query: 305 GDRESKLKFAFRIYDIDND 323
            D E  +  AF++ D D  
Sbjct: 91  ADPEDVIMGAFKVLDPDGK 109

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Length = 166

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDEF--- 262
           K+  G INF  F ++ G     +K+        I      F+ LD D  G++        
Sbjct: 69  KEASGPINFTVFLTMFG-----EKLKGADPEDVIMGA---FKVLDPDGKGSIKKSFLEEL 120

Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
             +         ++ +   F  D  G VD+K    
Sbjct: 121 LTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICY 155

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Length = 67

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           F K D +  G LS+DEF               + +  +  D D NGE++  EF  
Sbjct: 7   FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Length = 151

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR-LGKRFRKLDLDNSGALSIDEF 262
           +    S++ +  +++F+ F  ++    + K           + FR  D + +G +   E 
Sbjct: 52  LGNPKSDELKSRRVDFETFLPML--QAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAEL 109

Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                +L E      V+ V+    ED NG ++++ F++
Sbjct: 110 RHVLTTLGEKMTEEEVETVLA-GHEDSNGCINYEAFLK 146

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Length = 151

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDR--NGEVDFKEFIQGVS 299
           F   D    G +   +    +  L QNP    V +V+     D   +  VDF+ F+  + 
Sbjct: 16  FELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQ 75

Query: 300 QFSVKGDRESK--LKFAFRIYDIDND 323
             +    + +       FR++D + +
Sbjct: 76  AVAKNRGQGTYEDYLEGFRVFDKEGN 101

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Length = 81

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
           F+  D +  G +  DEF   + ++ + PL    V+  +   DED NG +D  EF+ 
Sbjct: 14  FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Length = 156

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 34/112 (30%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD------IRRLGKRFRKLDLDNSGA 256
            +      K  +  + F+EF            M  +             F+  D +  G 
Sbjct: 51  AVGGTH--KMGEKSLPFEEFLPA-----YEGLMDCEQGTFADYMEA---FKTFDREGQGF 100

Query: 257 LSIDEF----------MSLPELQQNPLVQRVIDIFD--EDRNGEVDFKEFIQ 296
           +S  E           +S  ++ +      +I + D  ED  G V +++F++
Sbjct: 101 ISGAELRHVLTALGERLSDEDVDE------IIKLTDLQEDLEGNVKYEDFVK 146

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Length = 156

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 44/120 (36%)

Query: 208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE 267
           D    RDG ++  +   +              R LG                        
Sbjct: 19  DFWDGRDGAVDAFKLGDV-------------CRCLG------------------------ 41

Query: 268 LQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQF-SVKGDRESKLKFAFRIYDIDND 323
              NP    V  V     +     + F+EF+         +    +    AF+ +D +  
Sbjct: 42  --INPRNEDVFAVGGT-HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ 98

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A Length = 150

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 11/92 (11%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
            +    +++ + DL+N G + +      + +L        ++++I       +  + +++
Sbjct: 48  KLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRD 107

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
           F+       + G R + LK    +++   ++ 
Sbjct: 108 FVN-----MMLGKRSAVLK-LVMMFEGKANES 133

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Length = 196

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 211 KDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
            +  G INF  F +I G     TD        I      F   D +  G    +      
Sbjct: 100 AEAPGPINFTMFLTIFGDRIAGTDEED----VIV---NAFNLFD-EGDGKCKEETLKRSL 151

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            +  E      V + +     D NG +D K+F Q
Sbjct: 152 TTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Length = 156

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
           F  +D+D  G +S ++      +L + P  + +  +  E   G ++F  F+   S     
Sbjct: 24  FSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE-APGPLNFTMFLSIFSDKLSG 82

Query: 305 GDRESKLKFAFRIYDIDND 323
            D E  ++ AF ++D    
Sbjct: 83  TDSEETIRNAFAMFDEQET 101

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Length = 156

 Score = 44.8 bits (107), Expect = 8e-06
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF----MS 264
           K+  G +NF  F SI        K+        +   F   D   +  L+I+       +
Sbjct: 61  KEAPGPLNFTMFLSIFS-----DKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLEN 115

Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           + +      ++        +  G+ D+ +F  
Sbjct: 116 MGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTA 146

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Length = 146

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL 268
            +     + ++++   +      K  V ++    K F   D + +G L+  +    L   
Sbjct: 57  KELYGDNLTYEQYLEYLSICVHDKDNVEELI---KMFAHFDNNCTGYLTKSQMKNILTTW 113

Query: 269 QQNPLVQRVIDIFDE-DRNGEVDFKEFIQGVSQ 300
                 Q  ID  +       +D+K F + + Q
Sbjct: 114 GDALTDQEAIDALNAFSSEDNIDYKLFCEDILQ 146

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Length = 146

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
               +  + G +SID       +L   P       I  E     + ++++++ +S     
Sbjct: 21  IYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKI-KELYGDNLTYEQYLEYLSICVHD 79

Query: 305 GDRESKLKFAFRIYDIDND 323
            D   +L   F  +D +  
Sbjct: 80  KDNVEELIKMFAHFDNNCT 98

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10 Length = 78

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDRNGEVDFKEFIQ 296
           F++ D +  G +S+ E    L  L       VQR++   D D +G +DF EFI 
Sbjct: 9   FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 62

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5 Length = 140

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           EITE +       +++ ++F  ++        M  D     K F+  D D +G + + E 
Sbjct: 42  EITEIE--STLPAEVDMEQFLQVLN-RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98

Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                SL E   N  +  ++       +G V++ +F+Q
Sbjct: 99  RYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 135

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5 Length = 140

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
           F   D   +G +        L    QNP +  + +I +     EVD ++F+Q +++ +  
Sbjct: 11  FSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI-ESTLPAEVDMEQFLQVLNRPNGF 69

Query: 305 GDRESK--LKFAFRIYDIDND 323
                       F+++D D  
Sbjct: 70  DMPGDPEEFVKGFQVFDKDAT 90

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A Length = 147

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
            +     ++ + DL+ +G + I      L +L        ++R+I            + +
Sbjct: 46  KLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSD 105

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           F++      + G R + L+    +Y+  N +
Sbjct: 106 FLR-----MMLGKRSAILR-MILMYEEKNKE 130

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Length = 86

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
           DI    + F++ D +  G +S  E     +   +     V+R++   D D +G + F EF
Sbjct: 9   DIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEF 68

Query: 295 IQ 296
             
Sbjct: 69  TD 70

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Length = 149

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 204 ITEDDSNKDRDGKINFQEFCSIV----GNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSI 259
           +      +     I F+EF  ++     N D  +    D        R  D + +G +  
Sbjct: 50  LGNPSKEEMNAAAITFEEFLPMLQAAANNKD--QGTFEDFVEG---LRVFDKEGNGTVMG 104

Query: 260 DEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            E      +L E      V+ ++    ED NG ++++ F++
Sbjct: 105 AELRHVLATLGEKMTEEEVEELMK-GQEDSNGCINYEAFVK 144

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Length = 149

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDR--NGEVDFKEFIQGVS 299
           F   D      ++  +       L QNP    + +++    ++      + F+EF+  + 
Sbjct: 14  FLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQ 73

Query: 300 QFSVKGDRESK--LKFAFRIYDIDND 323
             +   D+ +        R++D + +
Sbjct: 74  AAANNKDQGTFEDFVEGLRVFDKEGN 99

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens} Length = 107

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           + + DL+ +G + I      L +L        ++++I            + +F++
Sbjct: 38  YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLR 92

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 145

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLPE 267
           +     +   F ++       K      + +   FR LD + +G +   E     ++L +
Sbjct: 51  NAKE-FDLATFKTVY--RKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGD 107

Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
              +  V+ ++       +G ++++ F+ 
Sbjct: 108 ALTSSEVEELMKEVSVSGDGAINYESFVD 136

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 145

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV- 303
           F+  D DN G +SI+E   +L  L +NP    +  I  +    E D   F     +    
Sbjct: 11  FQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKT 70

Query: 304 KGDRESKLKFAFRIYDIDND 323
             ++  ++  AFR  D + +
Sbjct: 71  PTEQSKEMLDAFRALDKEGN 90

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Length = 92

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ--GVS 299
           F+  D D +G +S  E    +  L +      V+++I   D D +G+V+++EF++     
Sbjct: 15  FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTV 74

Query: 300 QFSVKGDRESKLKFAFR 316
           +    G+  S+L+  F 
Sbjct: 75  RGGGGGNGWSRLRRKFS 91

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A Length = 90

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           F   D D  G +S  E  + +  L QNP    +  +I+  DED +G +DF+EF+ 
Sbjct: 26  FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 8/120 (6%)

Query: 244 KRFRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVS 299
             F   D   +G +  ++F     S+          R++ I D +R G V F+ FI  +S
Sbjct: 729 ASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMS 788

Query: 300 QFSVKGDRESKLKFAFRIYDIDN----DDDYYQALGNELIAALIEPLTSAGGTMLLTDAY 355
           + +   D   ++  +F+I   D      D+  + L  +     I  +    G   +  A 
Sbjct: 789 RETADTDTADQVMASFKILAGDKNYITVDELRRELPPDQAEYCIARMAPYNGRDAVPGAL 848

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Length = 83

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 246 FRKLDLDNSGALSIDEF----------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
           F+KLD +  G ++  E            +L + +      ++I + D++ +G++  +EF+
Sbjct: 13  FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72

Query: 296 Q 296
            
Sbjct: 73  N 73

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus} Length = 94

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 216 KINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQN 271
             +  E     S++ +TD  +    +IR   + FR  D D +G +S  E    +  L + 
Sbjct: 9   HGSSGENLYFQSLMKDTDSEE----EIR---EAFRVEDKDGNGYISAAELRHVMTNLGEK 61

Query: 272 PL---VQRVIDIFDEDRNGEVDFKEFIQ 296
                V  +I   D D +G+V+++EF+Q
Sbjct: 62  LTDEEVDEMIREADIDGDGQVNYEEFVQ 89

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
            D  GK+ F+EF          K +  +I++    +++ + D SG +  +E       + 
Sbjct: 785 SDTTGKLGFEEF----------KYLWNNIKKWQGIYKRFETDRSGTIGSNELPGA--FEA 832

Query: 271 ------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
                   +   +I  +  D  G +DF  FI  +        R   +  AFR  D +  
Sbjct: 833 AGFHLNQHIYSMIIRRYS-DETGNMDFDNFISCLV-------RLDAMFRAFRSLDKNGT 883

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3 Length = 900

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           ++D +GK+   EF            +   IR     FRK DLD SG++S  E        
Sbjct: 587 DRDGNGKLGLVEF----------NILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAA 636

Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
              LP      +V R    F  D    +DF  F++ +        R   L   F+  D +
Sbjct: 637 GFKLPCQLHQVIVAR----FA-DDELIIDFDNFVRCLV-------RLEILFKIFKQLDPE 684

Query: 322 NDD 324
           N  
Sbjct: 685 NTG 687

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus} Length = 77

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
           F   D + +G++   E  +++  L  +     +  +++ +D + NG + F +F+ 
Sbjct: 13  FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 Length = 95

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
           +  +  + F K D D  G +S  E         L    L   +  + D    G++   +F
Sbjct: 8   EKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLL-AHIWSLCDTKDCGKLSKDQF 66

Query: 295 IQG 297
              
Sbjct: 67  ALA 69

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6 Length = 92

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
             +    +F+ +  D +G +       F +  +L    L   + ++ D D++G +   EF
Sbjct: 7   QRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILEL-SHIWELSDFDKDGALTLDEF 65

Query: 295 I 295
            
Sbjct: 66  C 66

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L Length = 714

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 30/122 (24%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           ++D  GK+  +EF            +   I++  K +R++D+D SG ++  E        
Sbjct: 585 DEDGSGKLGLKEF----------YILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEA 634

Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
              LP      +V R    F  D    +DF  F++ +        R   L   F+  D +
Sbjct: 635 GFKLPCQLHQVIVAR----FA-DDELIIDFDNFVRCLV-------RLEILFKIFKQLDPE 682

Query: 322 ND 323
           N 
Sbjct: 683 NT 684

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C Length = 143

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 16/69 (23%)

Query: 246 FRKLDLDNSGALSIDEFMS----------------LPELQQNPLVQRVIDIFDEDRNGEV 289
           F+  D D +  L   E  +                + E +   ++  V+   D++ +G +
Sbjct: 74  FKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI 133

Query: 290 DFKEFIQGV 298
           D+ EF + +
Sbjct: 134 DYAEFAKSL 142

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Length = 111

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
              +  + F   D   SG L+  +    +    L Q  L   + ++ D D++G++  +EF
Sbjct: 12  SRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQL-ASIWNLSDIDQDGKLTAEEF 70

Query: 295 IQG 297
           I  
Sbjct: 71  ILA 73

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens} Length = 71

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQ 296
           FR  D D  G +++DE   ++  L Q      +  +I   D D++G V+++EF +
Sbjct: 12  FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFAR 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	100.0
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	100.0
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	99.96
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	99.95
1u5t_B	169	Defective in vacuolar protein sorting; VPS36P; ESC	99.87
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	99.82
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	99.79
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	99.77
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	99.75
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	99.74
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	99.73
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	99.72
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	99.72
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	99.7
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	99.69
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	99.68
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	99.68
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	99.68
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	99.67
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	99.67
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	99.67
3fwb_A	161	Cell division control protein 31; gene gating, com	99.66
2jnf_A	158	Troponin C; stretch activated muscle contraction,	99.66
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	99.65
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	99.65
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	99.65
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	99.65
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	99.65
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.64
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	99.64
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	99.64
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	99.64
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	99.64
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	99.63
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	99.63
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	99.63
1y1x_A	191	Leishmania major homolog of programmed cell death	99.63
3cuq_A	234	Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu	99.62
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	99.62
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	99.62
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	99.62
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	99.62
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	99.61
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	99.61
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	99.61
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	99.61
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.61
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	99.61
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	99.61
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	99.61
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	99.6
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	99.6
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	99.6
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	99.6
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	99.6
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	99.6
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	99.59
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	99.59
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	99.59
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	99.59
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	99.59
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	99.58
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	99.58
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	99.58
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	99.58
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	99.57
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	99.57
1y1x_A	191	Leishmania major homolog of programmed cell death	99.57
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	99.57
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	99.57
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	99.57
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	99.57
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	99.56
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	99.56
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	99.56
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	99.56
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	99.56
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	99.56
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	99.55
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	99.55
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	99.54
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	99.54
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	99.54
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	99.54
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	99.53
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	99.53
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	99.52
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	99.52
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	99.51
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	99.51
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.5
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	99.5
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	99.5
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	99.5
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.5
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	99.49
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	99.49
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	99.48
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.48
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	99.48
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	99.48
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	99.48
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	99.47
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	99.46
1u5t_A	233	Appears to BE functionally related to SNF7; SNF8P;	99.46
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.46
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	99.46
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	99.46
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	99.46
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	99.45
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	99.45
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	99.45
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.45
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	99.44
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	99.44
3fwb_A	161	Cell division control protein 31; gene gating, com	99.43
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	99.43
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	99.42
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	99.42
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	99.41
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	99.41
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	99.41
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	99.4
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	99.4
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	99.4
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	99.4
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	99.4
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	99.39
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	99.39
2jnf_A	158	Troponin C; stretch activated muscle contraction,	99.38
2hps_A	186	Coelenterazine-binding protein with bound coelent;	99.38
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	99.37
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	99.37
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	99.37
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	99.37
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	99.36
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	99.36
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	99.35
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	99.35
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	99.35
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	99.35
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	99.34
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	99.33
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	99.33
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	99.33
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	99.33
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.32
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.32
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	99.32
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	99.31
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	99.31
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	99.31
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	99.31
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	99.31
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.31
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	99.31
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	99.31
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	99.3
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	99.3
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	99.3
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	99.29
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.29
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	99.29
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	99.29
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	99.29
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.29
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	99.28
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	99.28
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	99.27
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	99.27
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	99.26
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	99.26
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	99.25
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	99.25
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	99.24
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	99.24
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	99.24
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	99.23
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.23
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	99.23
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	99.21
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.2
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	99.18
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	99.17
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	99.17
2hps_A	186	Coelenterazine-binding protein with bound coelent;	99.17
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	99.15
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	99.14
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	99.11
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	99.11
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	99.1
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	99.1
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	99.1
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	99.09
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	99.09
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	99.06
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.05
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	99.05
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	99.02
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	98.98
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	98.98
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	98.97
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	98.95
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	98.95
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	98.9
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	98.88
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	98.84
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.83
2kld_A	123	Polycystin-2; PC2, PKD2, calcium binding domain, E	98.82
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.79
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	98.79
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	98.78
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	98.73
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	98.72
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	98.71
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	98.7
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	98.69
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	98.69
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.67
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	98.66
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	98.66
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	98.64
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.64
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	98.63
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	98.63
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	98.61
1c07_A	95	Protein (epidermal growth factor receptor pathway	98.6
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	98.59
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	98.58
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	98.57
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	98.57
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	98.56
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	98.56
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	98.55
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	98.54
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	98.53
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	98.53
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	98.52
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	98.5
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	98.5
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	98.49
1psr_A	100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	98.47
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	98.47
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	98.46
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	98.45
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	98.44
3li6_A	66	Calcium-binding protein; calcium signaling protein	98.44
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	98.43
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	98.43
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	98.43
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	98.43
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	98.42
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	98.42
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	98.41
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	98.41
2jq6_A	139	EH domain-containing protein 1; metal binding prot	98.41
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.4
1a4p_A	96	S100A10; S100 family, EF-hand protein, ligand of a	98.39
1h8b_A	75	ACT-EF34, alpha-actinin 2, skeletal muscle isoform	98.38
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	98.38
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	98.38
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	98.38
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	98.37
2kld_A	123	Polycystin-2; PC2, PKD2, calcium binding domain, E	98.35
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	98.35
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	98.35
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	98.29
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	98.28
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	98.27
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	98.27
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	98.26
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	98.24
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	98.21
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	98.2
1c07_A	95	Protein (epidermal growth factor receptor pathway	98.19
3li6_A	66	Calcium-binding protein; calcium signaling protein	98.19
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	98.19
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	98.18
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	98.17
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.17
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	98.17
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	98.16
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	98.16
3fia_A	121	Intersectin-1; EH 1 domain, NESG, structural genom	98.15
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	98.14
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	98.13
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	98.12
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	98.12
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	98.12
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	98.11
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	98.09
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	98.09
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	98.09
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	98.08
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	98.07
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	98.06
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	98.04
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	98.02
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	98.01
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	97.99
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	97.99
2jq6_A	139	EH domain-containing protein 1; metal binding prot	97.98
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	97.96
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	97.95
1sra_A	151	Sparc; extracellular matrix protein, calcium-bindi	97.95
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	97.94
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	97.92
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	97.9
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	97.9
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	97.89
1psr_A	100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	97.87
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	97.85
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	97.83
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	97.78
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	97.69
1h8b_A	75	ACT-EF34, alpha-actinin 2, skeletal muscle isoform	97.64
1a4p_A	96	S100A10; S100 family, EF-hand protein, ligand of a	97.62
3fia_A	121	Intersectin-1; EH 1 domain, NESG, structural genom	97.39
1nub_A	229	Basement membrane protein BM-40; extracellular mod	97.28
1sra_A	151	Sparc; extracellular matrix protein, calcium-bindi	97.11
1tuz_A	118	Diacylglycerol kinase alpha; transferase, HR532, n	97.03
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	96.97
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	96.86
1tuz_A	118	Diacylglycerol kinase alpha; transferase, HR532, n	96.77
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	96.48
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	96.3
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.95
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	95.91
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.63
1nub_A	229	Basement membrane protein BM-40; extracellular mod	95.55
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	95.54
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	94.69
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	94.66
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	94.23
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	94.17
1y5o_A	115	TFB1, RNA polymerase II transcription factor B 73	94.13
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	94.13
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	93.19
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	92.33
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	91.36
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	89.54
3jth_A	98	Transcription activator HLYU; transcription factor	89.04
1y0u_A	96	Arsenical resistance operon repressor, putative; s	89.0
1p6r_A	82	Penicillinase repressor; transcription regulation,	88.89
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	88.73
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	88.72
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	88.52
1wi9_A	72	Protein C20ORF116 homolog; helix-turn-helix motif,	88.2
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	88.01
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	87.94
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	87.39
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	87.33
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	87.27
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	87.26
3b77_A	193	Uncharacterized protein; pleckstrin-homology domai	87.05
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	86.58
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	86.5
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	86.46
2w25_A	150	Probable transcriptional regulatory protein; trans	86.43
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	86.42
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	86.39
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	86.35
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	85.99
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	85.85
2h09_A	155	Transcriptional regulator MNTR; transcription regu	85.06
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	85.05
1sfx_A	109	Conserved hypothetical protein AF2008; structural	85.02
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	84.8
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	84.79
2kko_A	108	Possible transcriptional regulatory protein (possi	84.74
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	84.53
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	83.96
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	83.89
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	83.17
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	82.55
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	82.42
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	82.29
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	82.2
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	82.01
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	81.59
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	81.14
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	81.1
2pex_A	153	Transcriptional regulator OHRR; transcription regu	81.03
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	80.98
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	80.88
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	80.79
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	80.7
1ku9_A	152	Hypothetical protein MJ223; putative transcription	80.69
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	80.65
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	80.63
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	80.56
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	80.49
2gxg_A	146	146AA long hypothetical transcriptional regulator;	80.44
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	80.22
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	80.17
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	80.05

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=100.00  E-value=1.7e-60  Score=491.17  Aligned_cols=372  Identities=21%  Similarity=0.323  Sum_probs=130.8

Q ss_pred             CCccccc------CCCCCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee-----cCccccccchhhhhHHHh
Q psy4132           1 MDRFEYC------SFELSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ-----KDITLCLALSYIQNAVEE   68 (473)
Q Consensus         1 ~~~~~~~------~~~l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~-----~~~~~~l~l~~v~~~~~~   68 (473)
                      |++|+|+      .|.|.++|++++++++||||+|+.| ++||+|+||||||||||+     ..+|++|||++|.++++.
T Consensus         1 m~~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~e~~   80 (566)
T 1w7p_D            1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYS   80 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccccccccCCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEEEecCCCCcceEEEEEhHHcceeeee
Confidence            8999998      6889999999999999999999999 999999999999999999     348999999999999998


Q ss_pred             hhhcccccCcccEEEEeecCCCCC---------------------------CC---------------------------
Q psy4132          69 AKSMFNLTAGRKIILYLSKAVPGK---------------------------NL---------------------------   94 (473)
Q Consensus        69 ~~~~~~~~~s~ki~~~l~~~~~~~---------------------------~~---------------------------   94 (473)
                      + +|  ++|||||+|++++...++                           .|                           
T Consensus        81 a-gf--lksSpKI~L~l~~~~~~~~~~~~~~~~~~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~  157 (566)
T 1w7p_D           81 S-GF--LTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKS  157 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             e-cc--ccCCCceEEeecCcccccccCCCCCCcccccccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhh
Confidence            8 56  399999999998643111                           00                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy4132          95 --------------------------------------------------------------------------------   94 (473)
Q Consensus        95 --------------------------------------------------------------------------------   94 (473)
                                                                                                      
T Consensus       158 ~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl~~CEiCg~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (566)
T 1w7p_D          158 SINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNK  237 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccccCCCcccCccccccccCCCCCcccccCChhhhcccccCCcCCCccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             --CCCC------CCCCCeEEEeccCCCchHHHHHHHHHHhhhhhhhccc-----cc--cc----c---c---------cc
Q psy4132          95 --GPSA------TSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQNK-----SA--QQ----T---K---------LR  143 (473)
Q Consensus        95 --~p~~------~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~~~~~-----~~--~~----~---~---------~~  143 (473)
                        +|..      .+...|||||||+||++.||++|+++|.+++|+..+.     +.  ++    +   .         ..
T Consensus       238 sp~p~~~s~~~~~~~~~~iKLSFR~gg~~~F~~~L~~aL~~~~W~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  317 (566)
T 1w7p_D          238 SSHSALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIE  317 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccccccCCCccCceEEEEEcCCCchHHHHHHHHHHHHHHhhhCCCccCCCcccccccccccccccccccccccccc
Confidence              1100      0124699999999999999999999999999985332     00  00    0   0         11


Q ss_pred             cccccchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHH
Q psy4132         144 EIKTRTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFC  223 (473)
Q Consensus       144 ~~~~~~gi~gi~r~~~~~~~~~~~~l~eaF~~lD~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~  223 (473)
                      ...+++||+||+|+.++++++++..+.+||+||+++|..+++|++|++.+..++++....++....   .+-..   ++.
T Consensus       318 ~~~~~~GI~gler~~e~~~~~~~~~i~~Af~DL~~LM~~AkemV~La~~~~~~~~~~~~~~s~~~~---~~e~~---~~~  391 (566)
T 1w7p_D          318 TKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITMKTKTLNLQDEST---VNEPK---TRR  391 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcccCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcc---chhhH---hhH
Confidence            234789999999999999999999999999999999999999999999998885444333221100   00000   110


Q ss_pred             HHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc
Q psy4132         224 SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV  303 (473)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~  303 (473)
                      ..                                                   |  ..+.+.-                 
T Consensus       392 s~---------------------------------------------------L--~Vtrd~~-----------------  401 (566)
T 1w7p_D          392 PL---------------------------------------------------L--ILDREKF-----------------  401 (566)
T ss_dssp             ---------------------------------------------------------CCSSCC-----------------
T ss_pred             hh---------------------------------------------------c--ccchhhc-----------------
Confidence            00                                                   0  0111100                 


Q ss_pred             CCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchh----hc-CCCccchhHHHHHHHhh-h-CCCCCCHHHHHHHH
Q psy4132         304 KGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPL----TS-AGGTMLLTDAYCRINRA-R-GLELLSPEDLLNSC  376 (473)
Q Consensus       304 ~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~----~~-~~g~i~l~d~~~~~~~~-~-g~~~ls~~ei~~~~  376 (473)
                                       ...+.|..++.+++.+++....    .. .+|+|++.|+|+.+||+ + |.+++||+|+.++|
T Consensus       402 -----------------~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll~A~  464 (566)
T 1w7p_D          402 -----------------LNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREAC  464 (566)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHHHHH
T ss_pred             -----------------CChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHHHHH
Confidence                             1234577777789999988865    55 88999999999999999 8 88999999999999


Q ss_pred             HHhccCCCCCeeHHhhhccceeeeecccCcHHHHHHHHHHHhhCCCCCHHHHHHhhC-------CcHHHHHHHHHHHHHc
Q psy4132         377 LALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLAS-------VSLVIAKHRLLLAETH  449 (473)
Q Consensus       377 ~~~D~~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~-------~s~~~~~~~l~~~~~~  449 (473)
                      +.+...+.|...+..|-+++.|+ ..... +.....++++++..+++|+.++++.++       |++.+|+|.|++||.+
T Consensus       465 ~~le~Lg~~~~~L~~~~sgvlVv-s~~~~-~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~e  542 (566)
T 1w7p_D          465 ERFEHLGLNELKLVKVNKRILCV-TSEKF-DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE  542 (566)
T ss_dssp             TTGGGGTCTTCEEEECSSSCEEE-ESSCH-HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCeEEEEEECCEEEEE-cCCCc-hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHc
Confidence            99999877655488888888887 55544 788899999999899999999999999       9999999999999999


Q ss_pred             CCccccCCcccccccccccCc
Q psy4132         450 GKLCRDQSIEGLRFYENKFLL  470 (473)
Q Consensus       450 g~l~~d~~~~g~~~~~n~~~~  470 (473)
                      |.||||++++|++||+|.|+.
T Consensus       543 G~l~rDd~~~G~~yypNlf~~  563 (566)
T 1w7p_D          543 GDLLIDKQLSGIYYYKNSYWP  563 (566)
T ss_dssp             TSEEEEEETTEEEEEECCSSC
T ss_pred             CCEEEECCCCceEEehhhccc
Confidence            999999999999999999984

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=100.00  E-value=3.7e-41  Score=290.02  Aligned_cols=131  Identities=37%  Similarity=0.599  Sum_probs=121.7

Q ss_pred             CCcccccCCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhHHHhhhhccccc
Q psy4132           1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAVEEAKSMFNLT   76 (473)
Q Consensus         1 ~~~~~~~~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~~~~~~~~~~~   76 (473)
                      ||||+|++|.|.+||+++++++||+||+|+.|++|++|+||||||||||+    +++|++|||++|.++++++++|   +
T Consensus         3 M~r~~~~~p~L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~~f---~   79 (140)
T 2hth_B            3 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGI---G   79 (140)
T ss_dssp             --CCEECCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTT---S
T ss_pred             ccceecCCCccCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeecccc---c
Confidence            99999999999999999999999999999999999999999999999999    5789999999999999999766   7


Q ss_pred             CcccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhhhhhcc
Q psy4132          77 AGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQN  134 (473)
Q Consensus        77 ~s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~~~~  134 (473)
                      +||||++++++++++++|||.+++++++||||||.||+++|+++|.+++.+|.|+..+
T Consensus        80 ~s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~k~W~~~~  137 (140)
T 2hth_B           80 KSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMP  137 (140)
T ss_dssp             SCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHCCC----
T ss_pred             cCceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHHHHHHhhhcccC
Confidence            9999999999999999999999999999999999999999999999999999998754

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=99.96  E-value=5.7e-31  Score=227.14  Aligned_cols=120  Identities=26%  Similarity=0.403  Sum_probs=109.1

Q ss_pred             CCccccc------CCCCCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee----c-CccccccchhhhhHHHh
Q psy4132           1 MDRFEYC------SFELSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ----K-DITLCLALSYIQNAVEE   68 (473)
Q Consensus         1 ~~~~~~~------~~~l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~----~-~~~~~l~l~~v~~~~~~   68 (473)
                      |.+|++.      .|.|.+||++|+++++|+||+|+.| +++++|+||||||||||+    + .+|++|||.+|.+++.+
T Consensus         9 ~~~~~~~~~t~s~rp~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~   88 (145)
T 2cay_A            9 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYS   88 (145)
T ss_dssp             GGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEE
T ss_pred             hhhcchhhhccCCCcccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEE
Confidence            7889996      7779999999999999999999999 999999999999999999    2 27999999999999999


Q ss_pred             hhhcccccCcccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhhhhhc
Q psy4132          69 AKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWTVQ  133 (473)
Q Consensus        69 ~~~~~~~~~s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~~~  133 (473)
                      +++|   ++|+||+++++|.          +++..++|||||.||+++|+++|.+++.++.|+..
T Consensus        89 ~~~f---g~s~Ki~l~~~p~----------~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~~~~~  140 (145)
T 2cay_A           89 SGFL---TRSPRLILFFKDP----------SSSTEFVQLSFRKSDGVLFSQATERALENILTEKN  140 (145)
T ss_dssp             CSSS---SSSCEEEEEESSC----------SSTTCCEEEEESSSCCHHHHHHHHHHHHHHHHC--
T ss_pred             cCcc---ccCceEEEEecCC----------CCCceEEEEEEcCCCchHHHHHHHHHHHHHHHhhc
Confidence            9765   7999999999742          67889999999999999999999999999999753

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=99.95  E-value=3.3e-28  Score=225.07  Aligned_cols=148  Identities=46%  Similarity=0.787  Sum_probs=139.3

Q ss_pred             CchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeeec
Q psy4132         323 DDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLK  402 (473)
Q Consensus       323 dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~~  402 (473)
                      .+.|..++..++.+++......++|+|++.|+|+.+||++|.+++||+|+.++|+.+..-+.| +.+..|-+++.|++..
T Consensus        70 ~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~-~~l~~~~sg~~vvqs~  148 (218)
T 3cuq_B           70 GTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLP-LRLRVFDSGVMVIELQ  148 (218)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCS-EEEEECTTSBEEEEET
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEECCCcEEEEcC
Confidence            357888888999999999888999999999999999999999999999999999999988765 9999999999999999


Q ss_pred             ccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccccccCcc
Q psy4132         403 SCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLLE  471 (473)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n~~~~~  471 (473)
                      +.+++....+++++++..+++|+.++++.++||+.+|++.|+.||.+|.+|||++++|++||||.|.+.
T Consensus       149 ~~~~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~pn~f~~~  217 (218)
T 3cuq_B          149 SHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFMTQ  217 (218)
T ss_dssp             TCCGGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEEECGGGCC
T ss_pred             CCchHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCceEEehhhcccC
Confidence            988888899999999999999999999999999999999999999999999999999999999999864

>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=99.87  E-value=1e-22  Score=180.56  Aligned_cols=145  Identities=19%  Similarity=0.285  Sum_probs=130.6

Q ss_pred             chhhHhhHHHHHHHHh---c-hhhcCCC-ccchhHHHHHHHhh-h-CCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         324 DDYYQALGNELIAALI---E-PLTSAGG-TMLLTDAYCRINRA-R-GLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       324 g~~~~~e~~el~~~L~---~-~~~~~~g-~i~l~d~~~~~~~~-~-g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      ..|..++..++.+++.   . ....++| +|++.|+++.+||+ + |.+++||+|+.++|+.+...+.|.+.+..|-+++
T Consensus        10 ~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~Dl~~A~~~l~~Lg~~~~~l~~~~sg~   89 (169)
T 1u5t_B           10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRI   89 (169)
T ss_dssp             TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEEEEETTTE
T ss_pred             hHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHhcCCCeEEEEEECCee
Confidence            3688889999999999   5 6677889 99999999999999 9 8899999999999999999988779999999999


Q ss_pred             eeeeecccCcHHHHHHHHHHHhhC-CC----CCHH-H-HHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccccccC
Q psy4132         397 KVLQLKSCEDASFVEKTYEIVSQN-VF----VTVE-Q-FSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFL  469 (473)
Q Consensus       397 ~vl~~~~~~~~~~~~~~~~~~~~~-~~----ls~~-e-~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n~~~  469 (473)
                      .|+ ...++++ +...++++++.. +.    +|.. + +|+.++||+.+|+|.|+.||.+|.+|||++++|++||+|.|+
T Consensus        90 ~V~-~~~~~d~-~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G~~y~~N~f~  167 (169)
T 1u5t_B           90 LCV-TSEKFDV-VKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYW  167 (169)
T ss_dssp             EEE-ESSCSHH-HHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSCEEEEECCSS
T ss_pred             EEE-eCCChhH-HHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCcceEEeeecC
Confidence            988 5555554 677888888875 77    8999 9 999999999999999999999999999999999999999998


Q ss_pred             c
Q psy4132         470 L  470 (473)
Q Consensus       470 ~  470 (473)
                      .
T Consensus       168 ~  168 (169)
T 1u5t_B          168 P  168 (169)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=99.82  E-value=5.7e-20  Score=175.67  Aligned_cols=211  Identities=15%  Similarity=0.232  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhh---h-hhhhcccccccccCCCCCceeHHHHHHHHccccc-
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNK---I-INRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI-  231 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~---~-~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~-  231 (473)
                      .+..+++++|..+|+       ..++...|+.++..++..   . .....++.  .+|.+++|.|+|+||+.++..... 
T Consensus        13 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~--~~D~~~~g~i~~~Ef~~~~~~~~~~   90 (263)
T 2f33_A           13 ITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVD--QYGQRDDGKIGIVELAHVLPTEENF   90 (263)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH--HHTTGGGCCBCHHHHHHHTTSCTTH
T ss_pred             ccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHH--HhCCCCCCcCcHHHHHHHHhhhhhH
Confidence            345679999999998       788889999998887741   0 12233333  379999999999999999863200 


Q ss_pred             ----cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----cCC---HHHH----HHHHHhcCCCCCcccHHHHH
Q psy4132         232 ----HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----QQN---PLVQ----RVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       232 ----~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~~~---~~~~----~l~~~~D~d~dG~I~~~EF~  295 (473)
                          ..........++.+|+.+|.+++|+|+.+||..+.. .    +..   ..+.    .++..+|.+++|.|+|+||+
T Consensus        91 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~  170 (263)
T 2f33_A           91 LLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMA  170 (263)
T ss_dssp             HHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence                002234567899999999999999999999998532 2    222   2333    49999999999999999999


Q ss_pred             HHHhh-------cccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCC
Q psy4132         296 QGVSQ-------FSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLS  368 (473)
Q Consensus       296 ~~l~~-------~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls  368 (473)
                      .++..       ........+.+..+|+.||+|++|.++..|+..++..+..   ..                 + ..++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~~---~~-----------------~-~~~~  229 (263)
T 2f33_A          171 RLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCE---KN-----------------K-QELD  229 (263)
T ss_dssp             HHSCTTTCSHHHHHHTCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHHH---HC-----------------T-TTCC
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH---hc-----------------C-CCCC
Confidence            98864       2234566788999999999999977776444333332221   00                 0 1377


Q ss_pred             HHHHHHHHHH-hccCCCCCeeHHhhhccce
Q psy4132         369 PEDLLNSCLA-LDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       369 ~~ei~~~~~~-~D~~~dg~Is~~EF~~~~~  397 (473)
                      ++++..+++. +|.|+||.|+++||...+.
T Consensus       230 ~~e~~~~~~~~~D~d~dG~i~~~EF~~~~~  259 (263)
T 2f33_A          230 INNISTYKKNIMALSDGGKLYRTDLALILS  259 (263)
T ss_dssp             TTTHHHHHHHHHTTSBTTEECGGGTHHHHC
T ss_pred             HHHHHHHHHHhhccCCCCeEcHHHHHHHHh
Confidence            7888888887 7999999999999987664

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=99.79  E-value=3.8e-19  Score=170.79  Aligned_cols=211  Identities=15%  Similarity=0.219  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHH----HHhh--hhhhhhhhhhcccc--cccccCCCCCceeHHHHHHHHccc
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMV----EISK--NISNKIINRQGEIT--EDDSNKDRDGKINFQEFCSIVGNT  229 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~----~lg~--~~~~~~~~~~~~~~--~~~~D~d~dG~I~f~EF~~~~~~~  229 (473)
                      +..+++++|..+|.       ..++...|+    .+|.  .++..  ++...+.  ...+|.|++|.|+|+||+.++...
T Consensus         9 ~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~--~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~   86 (272)
T 2be4_A            9 DAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDE--RVQQIKKSFMSAYDATFDGRLQIEELANMILPQ   86 (272)
T ss_dssp             CHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHH--HHHHHHHHHSCHHHHTCCSEEEHHHHHHHHSCH
T ss_pred             CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHHhcCCCCCcEeHHHHHHHHhhh
Confidence            34579999999998       688888888    8888  77765  4433221  134799999999999999985310


Q ss_pred             -------cccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----cCC---HH----HHHHHHHhcCCCCCccc
Q psy4132         230 -------DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----QQN---PL----VQRVIDIFDEDRNGEVD  290 (473)
Q Consensus       230 -------~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~~~---~~----~~~l~~~~D~d~dG~I~  290 (473)
                             ............++.+|+.+|.|++|.|+.+||..+.. .    +..   ..    +..++..+|.|++|.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~  166 (272)
T 2be4_A           87 EENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLD  166 (272)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEEE
T ss_pred             hHHHHHHHhhccCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCCCCcCc
Confidence                   00011123457799999999999999999999998532 2    222   12    34599999999999999


Q ss_pred             HHHHHHHHhhcc-----------cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHH
Q psy4132         291 FKEFIQGVSQFS-----------VKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRIN  359 (473)
Q Consensus       291 ~~EF~~~l~~~~-----------~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~  359 (473)
                      |+||+.++....           ......+.+..+|+.||+|++|.++..|+..++..+...                  
T Consensus       167 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~------------------  228 (272)
T 2be4_A          167 LNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMEL------------------  228 (272)
T ss_dssp             HHHHGGGSCCSSCSSTTSCCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHhhhHHHHhhhhhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHH------------------
Confidence            999998875410           011235679999999999999766664444333332210                  


Q ss_pred             hhhCCCCCCHHHHHH----HHHHhccCCCCCeeHHhhhcccee
Q psy4132         360 RARGLELLSPEDLLN----SCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       360 ~~~g~~~ls~~ei~~----~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                        .+ ..++++++..    +|..+|.|+||.|+++||...+..
T Consensus       229 --~~-~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~~  268 (272)
T 2be4_A          229 --VR-PSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGL  268 (272)
T ss_dssp             --HS-SSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTTC
T ss_pred             --cC-CCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHcc
Confidence              01 1378888876    999999999999999999887753

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=99.77  E-value=1.9e-19  Score=178.43  Aligned_cols=188  Identities=16%  Similarity=0.246  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|+       ..++...|..+|..++..  ++..++.  .+|.+++|.|+|.+|..++         
T Consensus       118 ~~e~~~l~~~F~~~D~d~dG~Is~~El~~~L~~lg~~~~~~--~i~~l~~--~~D~d~~G~I~f~ef~~l~---------  184 (323)
T 1ij5_A          118 EEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEG--PLKKLFV--MVENDTKGRMSYITLVAVA---------  184 (323)
T ss_dssp             HHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHHHHTTSCSS--HHHHHHH--HHHHCCSSTHHHHHHTTSH---------
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhcCCCCCcCcHHHHHhhh---------
Confidence            4456789999999997       788889999999888766  5555554  3789999999999997654         


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccC---CHHHHH-HHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ---NPLVQR-VIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~---~~~~~~-l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                       .....+..+|..+|.+++|+|+.+||..++ .+.   ...+.. ++..+|.+++|.|+|.||+.++....       .+
T Consensus       185 -~~~~~l~~~F~~~D~d~dG~Is~~El~~~l-~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~-------~l  255 (323)
T 1ij5_A          185 -NDLAALVADFRKIDTNSNGTLSRKEFREHF-VRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL-------VL  255 (323)
T ss_dssp             -HHHHTSCCCHHHHCTTCCSEECHHHHHHHH-HHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH-------HH
T ss_pred             -hHHHHHHHHHHHHCCCCCCcCcHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHH-------HH
Confidence             356678889999999999999999999965 432   345889 99999999999999999999998763       88


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHH-hchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAAL-IEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L-~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ..+|+.||.|++|.++.   .++..++ ..                     .| ..++++++..+|..+|.|+||.|+++
T Consensus       256 ~~~F~~~D~d~dG~Is~---~El~~~l~~~---------------------~g-~~ls~~e~~~l~~~~D~d~dG~Is~~  310 (323)
T 1ij5_A          256 RILYAFADFDKSGQLSK---EEVQKVLEDA---------------------HI-PESARKKFEHQFSVVDVDDSKSLSYQ  310 (323)
T ss_dssp             HHHHHHTCSSSCSSEEH---HHHHHHHHHT---------------------TC-CGGGCSTHHHHHHHHTTTTCSEECHH
T ss_pred             HHHHHHhCCCCCCCccH---HHHHHHHHHH---------------------cC-CCCCHHHHHHHHHHHCCCCCCcEeHH
Confidence            99999999999965555   3444444 21                     12 13667779999999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...+.
T Consensus       311 EF~~~~~  317 (323)
T 1ij5_A          311 EFVMLVL  317 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987664

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=99.75  E-value=5.2e-18  Score=148.45  Aligned_cols=138  Identities=23%  Similarity=0.291  Sum_probs=114.2

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      .+..++++++++|+.+|.|++|+|+.+||..+. ..+..   ..+..++..+|.+++|.|+|.||+..+.........++
T Consensus         4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~   83 (148)
T 2lmt_A            4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEE   83 (148)
T ss_dssp             CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHH
Confidence            456788999999999999999999999999853 33333   35788999999999999999999999988877788889


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||.|++|.++..|+   ..++..                    . | ..++++++..+++.+|.|+||.|+|
T Consensus        84 ~l~~aF~~~D~d~~G~I~~~El---~~~l~~--------------------~-g-~~~~~~e~~~l~~~~D~d~dG~I~~  138 (148)
T 2lmt_A           84 EMREAFKIFDRDGDGFISPAEL---RFVMIN--------------------L-G-EKVTDEEIDEMIREADFDGDGMINY  138 (148)
T ss_dssp             HHHHHHHHHHSSCSSEECHHHH---HHHHHH--------------------H-T-CCCCHHHHHHHHHHHCCSCCSSEEH
T ss_pred             HHHHHHHHHCCCCcCcCcHHHH---HHHHHH--------------------c-C-ccccHHHHHHHHHHhCCCCCCeEeH
Confidence            9999999999999966666433   333322                    1 2 2488999999999999999999999


Q ss_pred             Hhhhccc
Q psy4132         390 KTYSSGV  396 (473)
Q Consensus       390 ~EF~~~~  396 (473)
                      +||+..+
T Consensus       139 ~EF~~~m  145 (148)
T 2lmt_A          139 EEFVWMI  145 (148)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998654

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=99.74  E-value=2.8e-17  Score=143.78  Aligned_cols=141  Identities=58%  Similarity=0.828  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      +.+.+.++.+|+.+|.|++|+|+.+||..+...+..+.+..++..+|.+++|.|+|+||+.++..........+.++.+|
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~l~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F   81 (155)
T 3ll8_B            2 ADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAF   81 (155)
T ss_dssp             CHHHHHHHHHHHHHCTTCSSSBCHHHHTTSGGGTTCTTHHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEcHHHHHHhhccccchHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            35678999999999999999999999977888888889999999999999999999999999998877778889999999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHH----hccCCCCCeeHHh
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLA----LDKLPDSPIYLKT  391 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~----~D~~~dg~Is~~E  391 (473)
                      +.+|.|++|.++..++..   ++.                    ...| ..++++++..+++.    +|.|+||.|+++|
T Consensus        82 ~~~D~d~~G~i~~~e~~~---~l~--------------------~~~~-~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~e  137 (155)
T 3ll8_B           82 RIYDMDKDGYISNGELFQ---VLK--------------------MMVG-NNLKDTQLQQIVDKTIINADKDGDGRISFEE  137 (155)
T ss_dssp             HHHCTTCSSCBCHHHHHH---HHH--------------------HHHG-GGSCHHHHHHHHHHHHHHHCTTSSSSBCHHH
T ss_pred             HHhCCCCCCcCcHHHHHH---HHH--------------------HHhc-cCCCHHHHHHHHHHHHHHhCCCCCCcCcHHH
Confidence            999999996555543333   332                    2112 13778888888877    9999999999999


Q ss_pred             hhccceeee
Q psy4132         392 YSSGVKVLQ  400 (473)
Q Consensus       392 F~~~~~vl~  400 (473)
                      |...+..+.
T Consensus       138 F~~~~~~~~  146 (155)
T 3ll8_B          138 FCAVVGGLD  146 (155)
T ss_dssp             HHHHHGGGC
T ss_pred             HHHHHhccC
Confidence            998876543

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=99.73  E-value=8.9e-18  Score=145.89  Aligned_cols=136  Identities=18%  Similarity=0.292  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..+..+++.+|+.||.|++|+|+.+||..++ .++.   ...+..++..+|.+++|.|+|+||+.++..........+.+
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l   81 (143)
T 2obh_A            2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEI   81 (143)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHH
Confidence            3467889999999999999999999999853 3443   23578999999999999999999999987654444456789


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.||+|++|.++..   ++..++.                    .. | ..++++++.++++.+|.|+||.|+++|
T Consensus        82 ~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~D~d~dG~I~~~e  136 (143)
T 2obh_A           82 LKAFKLFDDDETGKISFK---NLKRVAK--------------------EL-G-ENLTDEELQEMIDEADRDGDGEVSEQE  136 (143)
T ss_dssp             HHHHHHHCTTCSSSBCHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHCTTSSSSBCHHH
T ss_pred             HHHHHHhCCCCCCcCcHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhCCCCCCcEeHHH
Confidence            999999999999655553   3333332                    11 2 248899999999999999999999999


Q ss_pred             hhccc
Q psy4132         392 YSSGV  396 (473)
Q Consensus       392 F~~~~  396 (473)
                      |+..+
T Consensus       137 F~~~~  141 (143)
T 2obh_A          137 FLRIM  141 (143)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=99.72  E-value=2.9e-17  Score=164.13  Aligned_cols=139  Identities=24%  Similarity=0.348  Sum_probs=110.6

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      ....+++++++++|+.||.|++|+|+.+||+.+ ..++..   ..++.++..+|.|++|.|+|+||+.++.........+
T Consensus       295 ~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~e  374 (440)
T 3u0k_A          295 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSE  374 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHTC------C
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChH
Confidence            445788999999999999999999999999985 344433   3588999999999999999999999998877777778


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.++.+|+.||+|++|.++.+|   |..+|..                    . | ..++++++.++++.+|.|+||.|+
T Consensus       375 eeLreAFk~fDkDgdG~IS~eE---Lr~vL~~--------------------l-G-e~LSdeEIdeLfke~D~DgDGkIs  429 (440)
T 3u0k_A          375 EEIREAFRVFDKDGNGYISAAE---LRHVMTN--------------------L-G-EKLTDEEVDEMIREADIDGDGQVN  429 (440)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHH---HHHHHHH--------------------H-T-CCCCHHHHHHHHHHHCTTCSSSEE
T ss_pred             HHHHHHHHHHCCCCcCcCCHHH---HHHHHHH--------------------h-C-CCCCHHHHHHHHHHhCCCCCCcEe
Confidence            8999999999999996666543   3333322                    1 2 248999999999999999999999


Q ss_pred             HHhhhccc
Q psy4132         389 LKTYSSGV  396 (473)
Q Consensus       389 ~~EF~~~~  396 (473)
                      ++||+..+
T Consensus       430 yeEFvkmM  437 (440)
T 3u0k_A          430 YEEFVQMM  437 (440)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998754

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.4e-17  Score=150.38  Aligned_cols=138  Identities=22%  Similarity=0.323  Sum_probs=113.5

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      .+..++++++++|+.||.|++|+|+.+||..++ .++..   ..+..++..+|.+++|.|+|.||+.++.........++
T Consensus         5 Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~   84 (176)
T 2lhi_A            5 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQ   84 (176)
T ss_dssp             CCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHH
Confidence            345678899999999999999999999999853 44433   35788999999999999999999999988777777788


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||+|++|.+..   .+|..+|..                    . | ..++++++.++++.+| |+||.|+|
T Consensus        85 ~l~~aF~~fD~d~~G~I~~---~el~~~l~~--------------------~-g-~~~~~~ei~~l~~~~d-d~dG~I~~  138 (176)
T 2lhi_A           85 ELLEAFKVFDKNGDGLISA---AELKHVLTS--------------------I-G-EKLTDAEVDDMLREVS-DGSGEINI  138 (176)
T ss_dssp             HHHHHHHHHCSSCSSSBCH---HHHHHHHHT--------------------T-T-CCCCHHHHHHHHHHHH-TTSSCBCT
T ss_pred             HHHHHHHHhCCCCCCcCcH---HHHHHHHHH--------------------c-C-cccchHHHHHHHHhhc-CCCCeEeH
Confidence            9999999999999965555   344444432                    1 1 2589999999999999 99999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...++
T Consensus       139 ~EF~~~m~  146 (176)
T 2lhi_A          139 QQFAALLS  146 (176)
T ss_dssp             THHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998764

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=99.70  E-value=9.6e-17  Score=139.89  Aligned_cols=137  Identities=25%  Similarity=0.345  Sum_probs=109.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...+...++.+|..+|.+++|.|+.+||..++ .++.   ...+..++..+|.+++|.|+|+||+.++..........+.
T Consensus         5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~   84 (148)
T 1exr_A            5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEE   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcHHH
Confidence            45677889999999999999999999999853 3332   2357889999999999999999999998765444455678


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|+.||+|++|.++..   ++..++.                    .. | ..++++++..+++.+|.|+||.|+++
T Consensus        85 l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~d~dg~i~~~  139 (148)
T 1exr_A           85 LIEAFKVFDRDGNGLISAA---ELRHVMT--------------------NL-G-EKLTDDEVDEMIREADIDGDGHINYE  139 (148)
T ss_dssp             HHHHHHHHSTTCSSCBCHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHCSSSSSSBCHH
T ss_pred             HHHHHHHhCCCCCCcCCHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhCCCCCCcEeHH
Confidence            9999999999999655553   3333332                    21 2 24889999999999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      ||+..+
T Consensus       140 eF~~~~  145 (148)
T 1exr_A          140 EFVRMM  145 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=99.69  E-value=2.5e-16  Score=144.80  Aligned_cols=140  Identities=29%  Similarity=0.454  Sum_probs=113.8

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc----------
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV----------  303 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~----------  303 (473)
                      ....+...++.+|..+|.|++|+|+.+||..+..++..+.+..++..+|.|++|.|+|+||+.++.....          
T Consensus        23 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~~~lg~~~~~~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~  102 (202)
T 2bec_A           23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQD  102 (202)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTCHHHHHSTTHHHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHhcCCCccHHHHHHHhCCCCCCcCcHHHHHHHHHHhcccchhcccccc
Confidence            3456788999999999999999999999999854555556999999999999999999999999988754          


Q ss_pred             ------CCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy4132         304 ------KGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCL  377 (473)
Q Consensus       304 ------~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~  377 (473)
                            .....+.++.+|+.||.|++|.+...   |+..++.                    ...| ..++++++..++.
T Consensus       103 ~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~---El~~~l~--------------------~~~g-~~~~~~~~~~~~~  158 (202)
T 2bec_A          103 PKKPEPLNSRRNKLHYAFQLYDLDRDGKISRH---EMLQVLR--------------------LMVG-VQVTEEQLENIAD  158 (202)
T ss_dssp             --CCCCTTSHHHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HSCC-SCCCHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhCCCCCCeEcHH---HHHHHHH--------------------HhcC-CCCCHHHHHHHHH
Confidence                  45667889999999999999555553   3333333                    2212 1378888888887


Q ss_pred             H----hccCCCCCeeHHhhhccce
Q psy4132         378 A----LDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       378 ~----~D~~~dg~Is~~EF~~~~~  397 (473)
                      .    +|.|+||.|+++||...+.
T Consensus       159 ~~~~~~D~d~dG~Is~~EF~~~~~  182 (202)
T 2bec_A          159 RTVQEADEDGDGAVSFVEFTKSLE  182 (202)
T ss_dssp             HHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred             HHHHHcCCCCCCcCcHHHHHHHHH
Confidence            7    9999999999999998775

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=99.68  E-value=3.6e-16  Score=144.55  Aligned_cols=155  Identities=32%  Similarity=0.478  Sum_probs=120.3

Q ss_pred             eeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         217 INFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       217 I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ++.+++..+...   ......+...++.+|..+|.|++|+|+.+||..+..++..+..++++..+|.+++|.|+|+||+.
T Consensus         9 l~~~~~~~l~~~---~~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~~lg~~~~~~~l~~~~d~~~~g~i~~~EF~~   85 (208)
T 2ct9_A            9 LRDEELEEIKKE---TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMR   85 (208)
T ss_dssp             CCHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCHHHHTSTTHHHHHHTTSCTTCSCEEHHHHHH
T ss_pred             CCHHHHHHHHHc---CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHcCCCCcHHHHHHHHcCCCCCcCcHHHHHH
Confidence            445555544431   22456678899999999999999999999999987777777788999999999999999999999


Q ss_pred             HHhhcccCC---------------CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhh
Q psy4132         297 GVSQFSVKG---------------DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRA  361 (473)
Q Consensus       297 ~l~~~~~~~---------------~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~  361 (473)
                      ++.......               ...+.++.+|+.||.|++|.++..   |+..++.                    ..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~---El~~~l~--------------------~~  142 (208)
T 2ct9_A           86 TLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRD---ELLQVLR--------------------MM  142 (208)
T ss_dssp             HHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HH
T ss_pred             HHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHH---HHHHHHH--------------------HH
Confidence            998764321               267889999999999999655553   3333333                    22


Q ss_pred             hCCCCCCHHHHHHH----HHHhccCCCCCeeHHhhhcccee
Q psy4132         362 RGLELLSPEDLLNS----CLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       362 ~g~~~ls~~ei~~~----~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      .| ..++++++..+    ++.+|.|+||.|+++||...+..
T Consensus       143 ~g-~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~  182 (208)
T 2ct9_A          143 VG-VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK  182 (208)
T ss_dssp             SC-TTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTT
T ss_pred             hC-CCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            12 13788888777    99999999999999999987764

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.68  E-value=2.9e-16  Score=135.41  Aligned_cols=136  Identities=17%  Similarity=0.283  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..+...++.+|+.+|.+++|.|+.+||..+. .++.   ...+..++..+|.+++|.|+|+||+.++..........+.+
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~   81 (142)
T 2bl0_C            2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDIL   81 (142)
T ss_dssp             CHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHHH
Confidence            3567889999999999999999999999953 3332   23588999999999999999999999998866667788999


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.+|.|++|.++..   ++..++.                    .. | ..++++++..++..+| |++|.|+++|
T Consensus        82 ~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d-~~dg~i~~~e  135 (142)
T 2bl0_C           82 RQAFRTFDPEGTGYIPKA---ALQDALL--------------------NL-G-DRLKPHEFAEFLGITE-TEKGQIRYDN  135 (142)
T ss_dssp             HHHHHHTCCSSCSCEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHHHHC-CSSSEECSHH
T ss_pred             HHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhC-CCCCcEeHHH
Confidence            999999999999655553   3333333                    21 2 1488999999999999 9999999999


Q ss_pred             hhccce
Q psy4132         392 YSSGVK  397 (473)
Q Consensus       392 F~~~~~  397 (473)
                      |...++
T Consensus       136 F~~~~~  141 (142)
T 2bl0_C          136 FINTMF  141 (142)
T ss_dssp             HHTTTC
T ss_pred             HHHHHc
Confidence            987653

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=99.68  E-value=7.5e-17  Score=142.19  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=110.2

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..+..++++++++|+.||.|++|+|+..||..++ .++..+. +..+..+..+++|.|+|.+|+.++.........++.+
T Consensus         9 ~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~-~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l   87 (153)
T 3i5g_B            9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP-DDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDAL   87 (153)
T ss_dssp             TCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC-HHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc-HHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHH
Confidence            3567889999999999999999999999999954 4554443 3445556667889999999999998887777888999


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.||+|++|.++.   .+|..+|..                     .| +.+|++++..+++.+|.+ ||.|+|+|
T Consensus        88 ~~aF~~fD~d~~G~I~~---~el~~~l~~---------------------~g-~~ls~~ei~~~~~~~D~~-dG~I~y~E  141 (153)
T 3i5g_B           88 RNAFSMFDEDGQGFIPE---DYLKDLLEN---------------------MG-DNFSKEEIKNVWKDAPLK-NKQFNYNK  141 (153)
T ss_dssp             HHHHHTTCSSCSSCCCH---HHHHHHHHS---------------------SS-SCCCHHHHHHHHTTCCEE-TTEECHHH
T ss_pred             HHHHhccccCCCCeEeH---HHHHHHHHH---------------------cC-CcCCHHHHHHHHHHhCCC-cCEEcHHH
Confidence            99999999999965555   344444432                     12 258999999999999998 99999999


Q ss_pred             hhccc
Q psy4132         392 YSSGV  396 (473)
Q Consensus       392 F~~~~  396 (473)
                      |+..+
T Consensus       142 F~~~m  146 (153)
T 3i5g_B          142 MVDIK  146 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98754

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=99.67  E-value=3.2e-16  Score=139.28  Aligned_cols=139  Identities=23%  Similarity=0.313  Sum_probs=111.7

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+...++.+|+.+|.|++|.|+.+||..+. .++.   ...+..++..+|.+++|.|+|+||+.++..........+
T Consensus        22 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~  101 (169)
T 3qrx_A           22 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSRE  101 (169)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHH
Confidence            345677899999999999999999999999853 3332   345889999999999999999999999987655445567


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .+..+|+.+|.|++|.++..   |+..++.                    .. | ..++++++..+|+.+|.|+||.|++
T Consensus       102 ~~~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~D~~~dg~i~~  156 (169)
T 3qrx_A          102 EILKAFRLFDDDNSGTITIK---DLRRVAK--------------------EL-G-ENLTEEELQEMIAEADRNDDNEIDE  156 (169)
T ss_dssp             HHHHHHHHHCTTCSSSBCHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHCCSSSSCBCH
T ss_pred             HHHHHHHHhCCCCCCcCCHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhCCCCCCCEeH
Confidence            89999999999999655553   3333332                    22 2 2589999999999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...++
T Consensus       157 ~eF~~~~~  164 (169)
T 3qrx_A          157 DEFIRIMK  164 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99988765

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=99.67  E-value=1.5e-16  Score=142.27  Aligned_cols=154  Identities=21%  Similarity=0.354  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHh-hhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEIS-KNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg-~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +..+++++|..+|+       ..++...|+.++ ..++..  +....+.  .+|.|++|.|+|+||+.++.         
T Consensus         5 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~ef~~~~~---------   71 (172)
T 2znd_A            5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPV--TVRSIIS--MFDRENKAGVNFSEFTGVWK---------   71 (172)
T ss_dssp             -CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHH--HHHHHHH--HHCSSSSSEECHHHHHHHHH---------
T ss_pred             chhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHH--HHHHHHH--HhCCCCCCcCCHHHHHHHHH---------
Confidence            34579999999998       566777777666 445544  4444444  37999999999999999876         


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                       ....++.+|+.+|.+++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.++...       +.+.
T Consensus        72 -~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~-------~~~~  143 (172)
T 2znd_A           72 -YITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL-------QRLT  143 (172)
T ss_dssp             -HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH-------HHHH
T ss_pred             -HHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH-------HHHH
Confidence             35789999999999999999999999953 333   23458899999999999999999999999765       7899


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhc
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIE  340 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~  340 (473)
                      .+|+.+|.|++|.++.. +++++.++..
T Consensus       144 ~~F~~~D~d~dG~i~~~-~~ef~~~~~~  170 (172)
T 2znd_A          144 DIFRRYDTDQDGWIQVS-YEQYLSMVFS  170 (172)
T ss_dssp             HHHHHHCTTSSSCCCCC-HHHHHHHHHT
T ss_pred             HHHHHhCCCCCCeEeee-HHHHHHHHHh
Confidence            99999999999666544 6777766653

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=99.67  E-value=6.2e-16  Score=142.55  Aligned_cols=163  Identities=23%  Similarity=0.363  Sum_probs=118.0

Q ss_pred             CCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC--CCCCccHHHHhcchhc---cCCHHHHHHHHHhcCCC
Q psy4132         211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD--NSGALSIDEFMSLPEL---QQNPLVQRVIDIFDEDR  285 (473)
Q Consensus       211 ~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d--~~G~Is~~el~~l~~~---~~~~~~~~l~~~~D~d~  285 (473)
                      +|+.|.++.+++..+...   ......+...++.+|+.+|.|  ++|.|+.+||..++..   .....++.+|..+|.++
T Consensus        11 ~~~~g~l~~~el~~l~~~---~~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~f~~~D~d~   87 (207)
T 2ehb_A           11 KNAMRPPGYEDPELLASV---TPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKR   87 (207)
T ss_dssp             ----------CHHHHHHH---SSCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHSCTTCCCHHHHHHHHHHCTTC
T ss_pred             hccccccCHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhccccccHHHHHHHHHHhcCCC
Confidence            367788999998877652   234567788999999999999  9999999999986432   12345788999999999


Q ss_pred             CCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCC
Q psy4132         286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLE  365 (473)
Q Consensus       286 dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~  365 (473)
                      +|.|+|.||+.++..........+.++.+|+.||.|++|.+...   |+..++...+..                 .| .
T Consensus        88 ~g~i~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~---E~~~~l~~~~~~-----------------~g-~  146 (207)
T 2ehb_A           88 NGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIERE---ELKEMVVALLHE-----------------SE-L  146 (207)
T ss_dssp             SSEECHHHHHHHHGGGSTTSCHHHHHHHHHHHHCTTCCSSEEHH---HHHHHHHHHHHH-----------------HT-C
T ss_pred             CCeEeHHHHHHHHHHHccCCCHHHHHHHHHHHhCCCCCCcCcHH---HHHHHHHHHHHH-----------------cc-c
Confidence            99999999999998886666778899999999999999766664   444444322111                 12 1


Q ss_pred             CCCHHHHH----HHHHHhccCCCCCeeHHhhhccce
Q psy4132         366 LLSPEDLL----NSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       366 ~ls~~ei~----~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .++++++.    .+|+.+|.|+||.|+++||...+.
T Consensus       147 ~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  182 (207)
T 2ehb_A          147 VLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVS  182 (207)
T ss_dssp             CCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            36776654    456799999999999999987765

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=99.66  E-value=6.7e-16  Score=135.80  Aligned_cols=138  Identities=20%  Similarity=0.247  Sum_probs=113.3

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+...++.+|+.+|.+++|.|+.+||..+. .++   ....+..++..+|.+++|.|+|+||+.++..........+
T Consensus        17 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~   96 (161)
T 3fwb_A           17 LLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLD   96 (161)
T ss_dssp             SCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHH
Confidence            456678899999999999999999999999853 333   2335889999999999999999999999988767777889


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .+..+|+.||.|++|.+...   ++..++.                    .. | ..++++++..+++.+|.|++|.|++
T Consensus        97 ~~~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-~-~~~~~~~~~~~~~~~d~~~~g~i~~  151 (161)
T 3fwb_A           97 EIKRAFQLFDDDHTGKISIK---NLRRVAK--------------------EL-G-ETLTDEELRAMIEEFDLDGDGEINE  151 (161)
T ss_dssp             HHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHTTCSSSSSSEEH
T ss_pred             HHHHHHHHHcCCCCCeEeHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhCCCCCCcCcH
Confidence            99999999999999655553   3333332                    21 2 1488999999999999999999999


Q ss_pred             Hhhhccc
Q psy4132         390 KTYSSGV  396 (473)
Q Consensus       390 ~EF~~~~  396 (473)
                      +||...+
T Consensus       152 ~eF~~~~  158 (161)
T 3fwb_A          152 NEFIAIC  158 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=99.66  E-value=5.5e-16  Score=136.15  Aligned_cols=139  Identities=23%  Similarity=0.315  Sum_probs=111.7

Q ss_pred             cchHHHHHHHHHHHhhC-CCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC---
Q psy4132         234 KMVVDIRRLGKRFRKLD-LDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG---  305 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D-~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~---  305 (473)
                      ....+...++.+|..+| .+++|+|+.+||..+. .++.   ...+..++..+|.+++|.|+|+||+.++.......   
T Consensus         7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~   86 (158)
T 2jnf_A            7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNP   86 (158)
T ss_dssp             SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccch
Confidence            34567889999999999 9999999999999853 3332   23588999999999999999999999998775544   


Q ss_pred             -CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         306 -DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       306 -~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                       ...+.++.+|+.||.|++|.+...   ++..++.                    .. | ..++++++..++..+|.|+|
T Consensus        87 ~~~~~~~~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~D~d~d  141 (158)
T 2jnf_A           87 EQMQQELREAFRLYDKEGNGYISTD---VMREILA--------------------EL-D-ETLSSEDLDAMIDEIDADGS  141 (158)
T ss_dssp             TTTSSTHHHHHHHHCSSSSSSEEHH---HHHHHHH--------------------HH-C-TTCCHHHHHHHHHHHCSSCC
T ss_pred             hhHHHHHHHHHHHhCCCCCCeEcHH---HHHHHHH--------------------Hh-C-CcCCHHHHHHHHHHhCCCCC
Confidence             567789999999999999655553   3333332                    21 2 14789999999999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||...+.
T Consensus       142 g~i~~~eF~~~~~  154 (158)
T 2jnf_A          142 GTVDFEEFMGVMT  154 (158)
T ss_dssp             SEECSHHHHHHTS
T ss_pred             CcEeHHHHHHHHh
Confidence            9999999987653

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=99.65  E-value=3e-16  Score=139.27  Aligned_cols=139  Identities=17%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             cchHHHHHHHHHHHhhCC--CCCCCccHHHHhcc-hhccCCHHHHHHHH--HhcCCCCCcccHHHHHHHHhhccc--CCC
Q psy4132         234 KMVVDIRRLGKRFRKLDL--DNSGALSIDEFMSL-PELQQNPLVQRVID--IFDEDRNGEVDFKEFIQGVSQFSV--KGD  306 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~--d~~G~Is~~el~~l-~~~~~~~~~~~l~~--~~D~d~dG~I~~~EF~~~l~~~~~--~~~  306 (473)
                      .+..++++++++|..||.  |++|+|+..||+.+ ..+|.++.-.++-.  ..+.+++|.|+|+||+.++.....  ...
T Consensus         3 Lt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~   82 (159)
T 3i5g_C            3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGT   82 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccc
Confidence            456788999999999995  89999999999995 45665554333322  246788999999999999876644  345


Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhcc--CCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDK--LPD  384 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~--~~d  384 (473)
                      ..+.++.+|+.||+|++|.++..   +|..+|..                     .| ..+|++++..+++.+|.  |+|
T Consensus        83 ~~~~l~~aF~~fD~d~~G~I~~~---el~~~l~~---------------------~g-~~ls~~e~~~l~~~~D~~~d~d  137 (159)
T 3i5g_C           83 AADEFMEAFKTFDREGQGLISSA---EIRNVLKM---------------------LG-ERITEDQCNDIFTFCDIREDID  137 (159)
T ss_dssp             CHHHHHHHHHHHCTTSSSEECHH---HHHHHHHH---------------------SS-SCCCHHHHHHHHHHTTCCCCSS
T ss_pred             hHHHHHHHHHHHhcCCCCcCcHH---HHHHHHHH---------------------hC-CCCCHHHHHHHHHHhCcCCCCC
Confidence            67889999999999999666654   33333332                     12 25899999999999995  889


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+|+||+..+.
T Consensus       138 G~I~~~EF~~~m~  150 (159)
T 3i5g_C          138 GNIKYEDLMKKVM  150 (159)
T ss_dssp             CCEEHHHHHHHHH
T ss_pred             CeEeHHHHHHHHH
Confidence            9999999987664

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=99.65  E-value=5.4e-16  Score=137.55  Aligned_cols=134  Identities=13%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHhhhh---------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         162 QKETSSNINNAFKDLNQ---------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       162 ~~~~~~~l~eaF~~lD~---------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      .+++..++++||..||.         ..++...|++||.+++..  ++..++.   .|.+++|.|+|+||+.++.... .
T Consensus         4 t~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~--el~~~~~---~d~~~~g~i~f~eFl~~~~~~~-~   77 (159)
T 3i5g_C            4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEA--QVHQHGG---TKKMGEKAYKLEEILPIYEEMS-S   77 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHH--HHHTTTC---CSSTTSCEECHHHHHHHHHHHT-T
T ss_pred             CHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHH--HHHHHHc---ccccCCCcccHHHHHHHHHHhh-c
Confidence            45566789999999983         789999999999999987  6666553   5778899999999999886321 1


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcC--CCCCcccHHHHHHHHhhc
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDE--DRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~--d~dG~I~~~EF~~~l~~~  301 (473)
                      .......+.++.+|+.||++++|+|+.+||+.++ .++.   ...++.+++.+|.  |++|.|+|+||+.+|..-
T Consensus        78 ~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~  152 (159)
T 3i5g_C           78 KDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAG  152 (159)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHC
T ss_pred             ccccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCC
Confidence            2233456789999999999999999999999964 3442   3458899999985  889999999999988653

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=99.65  E-value=7.1e-16  Score=133.37  Aligned_cols=137  Identities=25%  Similarity=0.328  Sum_probs=110.6

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+...++.+|+.+|.+++|.|+.+||..+. .++   ....+..++..+|.+++|.|+|+||+.++..........+
T Consensus         5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~   84 (147)
T 4ds7_A            5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQ   84 (147)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHH
Confidence            356678899999999999999999999999853 332   2335789999999999999999999999987655556678


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .+..+|+.+|.|++|.+...   ++..++.                    .. | ..++++++..+++.+| |++|.|++
T Consensus        85 ~~~~~F~~~D~d~~G~i~~~---e~~~~l~--------------------~~-~-~~~~~~~~~~~~~~~d-~~dg~i~~  138 (147)
T 4ds7_A           85 ELLEAFKVFDKNGDGLISAA---ELKHVLT--------------------SI-G-EKLTDAEVDEMLREVS-DGSGEINI  138 (147)
T ss_dssp             HHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHS-SSCSSEEH
T ss_pred             HHHHHHHHhCCCCCCeECHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhc-CCCCcCcH
Confidence            89999999999999655553   3333332                    21 2 1488999999999999 99999999


Q ss_pred             Hhhhccc
Q psy4132         390 KTYSSGV  396 (473)
Q Consensus       390 ~EF~~~~  396 (473)
                      +||...+
T Consensus       139 ~eF~~~l  145 (147)
T 4ds7_A          139 KQFAALL  145 (147)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998765

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=99.65  E-value=6e-16  Score=133.54  Aligned_cols=136  Identities=13%  Similarity=0.221  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      ..+...++.+|+.+|.|++|+|+.+||..+ ..++..+....+...+.. ++|.|+|+||+.++..........+.+..+
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~   81 (143)
T 3j04_B            3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE-APGPINFTMFLTMFGEKLNGTDPEDVIRNA   81 (143)
T ss_dssp             HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT-SSSCCCHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh-CCCCcCHHHHHHHHHHHhccCCcHHHHHHH
Confidence            457789999999999999999999999995 445544444444444444 899999999999999877777788999999


Q ss_pred             hHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhc
Q psy4132         315 FRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSS  394 (473)
Q Consensus       315 F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~  394 (473)
                      |+.||.|++|.++..                       ++...+... | ..++++++..+++.+|.|+||.|+++||+.
T Consensus        82 F~~~D~d~~G~I~~~-----------------------El~~~l~~~-g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~  136 (143)
T 3j04_B           82 FACFDEEASGFIHED-----------------------HLRELLTTM-G-DRFTDEEVDEMYREAPIDKKGNFNYVEFTR  136 (143)
T ss_dssp             HTTSCSSSCCCCCTT-----------------------THHHHHHTS-S-SCCCHHHHHHHHHHTTCCSSSCCCSTHHHH
T ss_pred             HHHHCCCCCCeEcHH-----------------------HHHHHHHHc-C-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            999999999555553                       333333322 2 148899999999999999999999999987


Q ss_pred             cce
Q psy4132         395 GVK  397 (473)
Q Consensus       395 ~~~  397 (473)
                      .++
T Consensus       137 ~~~  139 (143)
T 3j04_B          137 ILK  139 (143)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=99.65  E-value=1.4e-15  Score=132.25  Aligned_cols=139  Identities=16%  Similarity=0.239  Sum_probs=110.0

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCC---
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD---  306 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~---  306 (473)
                      ....+...++.+|+.+|.+++|.|+.+||..+. .++   ....+..++..+|.+++|.|+|+||+.++........   
T Consensus         5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~   84 (153)
T 3ox6_A            5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADM   84 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhcccccc
Confidence            356678899999999999999999999999853 332   2335789999999999999999999999976654443   


Q ss_pred             -cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         307 -RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       307 -~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                       ..+.+..+|+.+|.|++|.++..                       ++...+....|. .++++++..++..+|.|++|
T Consensus        85 ~~~~~~~~~F~~~D~d~~G~i~~~-----------------------el~~~l~~~~~~-~~~~~~~~~~~~~~d~~~dg  140 (153)
T 3ox6_A           85 IGVKELRDAFREFDTNGDGEISTS-----------------------ELREAMRALLGH-QVGHRDIEEIIRDVDLNGDG  140 (153)
T ss_dssp             HCHHHHHHHHHHHCTTCSSSBCHH-----------------------HHHHHHHHHHSS-CCCHHHHHHHHHHHCSSSSS
T ss_pred             ccHHHHHHHHHHhCCCCCCcCcHH-----------------------HHHHHHHHHhcC-CCCHHHHHHHHHHhCCCCCC
Confidence             25778999999999999555553                       333333332232 48899999999999999999


Q ss_pred             CeeHHhhhccc
Q psy4132         386 PIYLKTYSSGV  396 (473)
Q Consensus       386 ~Is~~EF~~~~  396 (473)
                      .|+++||...+
T Consensus       141 ~i~~~eF~~~~  151 (153)
T 3ox6_A          141 RVDFEEFVRMM  151 (153)
T ss_dssp             SBCHHHHHHHT
T ss_pred             eEeHHHHHHHH
Confidence            99999998765

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.64  E-value=6.7e-17  Score=181.11  Aligned_cols=208  Identities=17%  Similarity=0.210  Sum_probs=133.7

Q ss_pred             HHHHHHHHHhhhh------hhhHHHHHHHHhh--------hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccc
Q psy4132         166 SSNINNAFKDLNQ------LMSMAKEMVEISK--------NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI  231 (473)
Q Consensus       166 ~~~l~eaF~~lD~------~~e~~~~l~~lg~--------~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~  231 (473)
                      ..+++++|..+|.      ..++...|..++.        .++..  +...++.  .+|.|++|.|+|+||+.++.    
T Consensus       533 ~~~l~~~F~~~D~~dG~Is~~El~~~L~~~~~~~~~~~~~~~s~~--~~~~l~~--~~D~d~~G~I~~~EF~~~~~----  604 (900)
T 1qxp_A          533 DDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLE--SCRSMVN--LMDRDGNGKLGLVEFNILWN----  604 (900)
T ss_dssp             --------CCCCCSSSSCCCSCTTTTTCC---------CCCCCHH--HHHHHHH--HHCC--CCCCCSSSHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHhhcccccccCCCCCHH--HHHHHHH--HhCCCCCCcCCHHHHHHHHH----
Confidence            5679999998885      4555566666554        44444  4555554  37999999999999999987    


Q ss_pred             cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         232 HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       232 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                            ..+.++.+|+.+|.|++|+|+.+||+.++ .++   ....++.++..+| |++|.|+|+||+.++...      
T Consensus       605 ------~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~l~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~~------  671 (900)
T 1qxp_A          605 ------RIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL------  671 (900)
T ss_dssp             ------HHHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECCHHHHHHHHHHTS-CSSSBCCHHHHHHHHHHH------
T ss_pred             ------HHHHHHHHHHhhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHHH------
Confidence                  34789999999999999999999999854 222   3346889999999 999999999999998765      


Q ss_pred             HHHHHHHhHHhcCCCCchhhH--hhH----------------------------------HHHHHHHhchhhcCCCccch
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQ--ALG----------------------------------NELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~--~e~----------------------------------~el~~~L~~~~~~~~g~i~l  351 (473)
                       +.+..+|+.+|.|++|.+..  .++                                  .++..+......+ +|.|+.
T Consensus       672 -~~l~~~F~~~D~d~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~-~G~Is~  749 (900)
T 1qxp_A          672 -EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGD-DMEVSA  749 (900)
T ss_dssp             -HHHHHHHHHSCSSCCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTC-SSCBCH
T ss_pred             -HHHHHHHHhhCCCCCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCC-CCccCH
Confidence             67888899999998865522  110                                  1122222222222 567777


Q ss_pred             hHHHHHHHhhh------CCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRAR------GLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~------g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .++...+....      +...++.+++..+++.+|.|+||.|+++||...+
T Consensus       750 ~El~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~  800 (900)
T 1qxp_A          750 TELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW  800 (900)
T ss_dssp             HHHTTTSCC----CCSCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHH
T ss_pred             HHHHHHHHHhcccccccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHH
Confidence            77766555432      0123566667777777777777777777765543

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=99.64  E-value=2e-15  Score=141.10  Aligned_cols=133  Identities=20%  Similarity=0.176  Sum_probs=106.3

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+.+.++++|+.+|.|++|.|+.+||..+. ..+.   ...++.++..+|.|++|.|+|+||+.++...       +
T Consensus        45 l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~-------~  117 (220)
T 3sjs_A           45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM-------E  117 (220)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------H
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------H
Confidence            446677889999999999999999999999953 3332   2358899999999999999999999998875       7


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||+|++|.++..   |+..++.                    .. | ..++++++..+++.+| |+||.|++
T Consensus       118 ~l~~~F~~~D~d~~G~I~~~---El~~~l~--------------------~~-g-~~~~~~~~~~l~~~~d-d~dg~I~~  171 (220)
T 3sjs_A          118 LAYNLFVMNARARSGTLEPH---EILPALQ--------------------QL-G-FYINQRTSLLLHRLFA-RGMAFCDL  171 (220)
T ss_dssp             HHHHHHHHHCCSSTTEECHH---HHHHHHH--------------------HH-T-CCCCHHHHHHHHHHHC---CCSEEH
T ss_pred             HHHHHHHHHCCCCCCCCcHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhc-CCCCcCcH
Confidence            79999999999999666654   3333332                    21 2 1488999999999999 99999999


Q ss_pred             Hhhhccceee
Q psy4132         390 KTYSSGVKVL  399 (473)
Q Consensus       390 ~EF~~~~~vl  399 (473)
                      +||+..+..+
T Consensus       172 ~eF~~~~~~l  181 (220)
T 3sjs_A          172 NCWIAICAFA  181 (220)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=99.64  E-value=8e-16  Score=135.45  Aligned_cols=139  Identities=27%  Similarity=0.319  Sum_probs=111.5

Q ss_pred             cchHHHHHHHHHHHhhCCCC-CCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc---CC
Q psy4132         234 KMVVDIRRLGKRFRKLDLDN-SGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV---KG  305 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~-~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~---~~  305 (473)
                      ....+...++.+|..+|.++ +|.|+.+||..+. .++.   ...+..++..+|.|++|.|+|+||+.++.....   ..
T Consensus        12 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~   91 (161)
T 1dtl_A           12 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKG   91 (161)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcccccc
Confidence            34567889999999999999 9999999999953 3332   335889999999999999999999999988755   56


Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      ...+.+..+|+.+|.|++|.+..   +++..++..                    . | ..++++++..+|..+|.|+||
T Consensus        92 ~~~~~~~~~F~~~D~d~~G~i~~---~El~~~l~~--------------------~-g-~~~~~~~~~~~~~~~D~d~dg  146 (161)
T 1dtl_A           92 KSEEELSDLFRMFDKNADGYIDL---EELKIMLQA--------------------T-G-ETITEDDIEELMKDGDKNNDG  146 (161)
T ss_dssp             CHHHHHHHHHHHHCTTCSSEEEH---HHHGGGGTT--------------------C----CCCHHHHHHHHHHHCTTSSS
T ss_pred             hHHHHHHHHHHHhCCCCCCcCcH---HHHHHHHHH--------------------h-C-CCCCHHHHHHHHHHhCCCCCC
Confidence            67788999999999999965555   344443332                    1 1 148899999999999999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||...+.
T Consensus       147 ~i~~~eF~~~~~  158 (161)
T 1dtl_A          147 RIDYDEFLEFMK  158 (161)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             cEeHHHHHHHHH
Confidence            999999987764

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=99.64  E-value=2e-15  Score=137.76  Aligned_cols=138  Identities=23%  Similarity=0.309  Sum_probs=107.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ...+...++.+|+.+|.|++|+|+.+||..++ .++  ....+..++..+|.|++|.|+|+||+.++....  ....+.+
T Consensus        47 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~--~~~~~~l  124 (191)
T 3k21_A           47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRK--QLSKKLI  124 (191)
T ss_dssp             CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCTTHHHHHHHHCTTCSSSEEHHHHHHHHSCGG--GCCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhhh--hccHHHH
Confidence            35677889999999999999999999999953 222  235688999999999999999999999886553  3567889


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHH---HHHHHHHHhccCCCCCee
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPE---DLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~---ei~~~~~~~D~~~dg~Is  388 (473)
                      ..+|+.||.|++|.++..   |+..++..                    ......++++   ++..+|+.+|.|+||.|+
T Consensus       125 ~~~F~~~D~d~~G~Is~~---El~~~l~~--------------------~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is  181 (191)
T 3k21_A          125 YCAFRVFDVDNDGEITTA---ELAHILYN--------------------GNKKGNITQRDVNRVKRMIRDVDKNNDGKID  181 (191)
T ss_dssp             HHHHHHHSTTCSSCBCHH---HHHHHHHH--------------------SSSCSCCCHHHHHHHHHHHHHHCSSSSSSBC
T ss_pred             HHHHHHhCCCCCCcCCHH---HHHHHHHh--------------------cCCCCCCCHhHHHHHHHHHHHhcCCCCCeEC
Confidence            999999999999655553   44444432                    1111135653   578899999999999999


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      ++||...++
T Consensus       182 ~~EF~~~~~  190 (191)
T 3k21_A          182 FHEFSEMMK  190 (191)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999987654

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.5e-16  Score=140.48  Aligned_cols=130  Identities=19%  Similarity=0.294  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ++..+|+++|..||+       ..++...|+.+|.+++..  ++..++..  +|.+++|.|+|.||+.++...   ....
T Consensus         8 eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~--~~~~~~~~--~d~d~~~~i~~~ef~~~~~~~---~~~~   80 (176)
T 2lhi_A            8 EQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEA--EVNDLMNE--IDVDGNHQIEFSEFLALMSRQ---LKSN   80 (176)
T ss_dssp             TGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHH--HHHHHHTT--TCSSCSSSBCTTHHHHHHTSS---CCSS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHH--HHHHHHHH--hCcCCCccchHHHHHHHHHHh---cccC
Confidence            344579999999999       789999999999999987  66666654  899999999999999988732   2334


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.++.+|+.||.|++|+|+.+||+.++. .+   ....++.+++.+| |+||.|+|+||+.+|..-
T Consensus        81 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m~k~  148 (176)
T 2lhi_A           81 DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALLSKG  148 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHHTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhc-CCCCeEeHHHHHHHHHhc
Confidence            5667899999999999999999999999643 32   2345889999999 999999999999999765

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=99.63  E-value=6.1e-16  Score=147.53  Aligned_cols=197  Identities=14%  Similarity=0.119  Sum_probs=132.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc---
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF---  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~---  301 (473)
                      ...+.++++.+|+.+|.|++|.|+.+||..++. ++         ....+..++..+|.+++|.|+|+||+.++...   
T Consensus        11 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~   90 (263)
T 2f33_A           11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENF   90 (263)
T ss_dssp             SCCCHHHHHHHHHHHCTTCSSSBCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTH
T ss_pred             CcccHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhH
Confidence            345667899999999999999999999988532 21         12456789999999999999999999887643   


Q ss_pred             -----ccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHH---------------------hchhhcCCCccchhHHH
Q psy4132         302 -----SVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAAL---------------------IEPLTSAGGTMLLTDAY  355 (473)
Q Consensus       302 -----~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L---------------------~~~~~~~~g~i~l~d~~  355 (473)
                           .......+.++.+|+.||.|++|.++..++..++..+                     .....+.+|.|++.++.
T Consensus        91 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~  170 (263)
T 2f33_A           91 LLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMA  170 (263)
T ss_dssp             HHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence                 1345567789999999999999877776665544332                     11223455777887776


Q ss_pred             HHHHh-------hhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeeec---ccCcHHHHHHHHHH-H--hhCCC
Q psy4132         356 CRINR-------ARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQLK---SCEDASFVEKTYEI-V--SQNVF  422 (473)
Q Consensus       356 ~~~~~-------~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~~---~~~~~~~~~~~~~~-~--~~~~~  422 (473)
                      ..+..       ..+ ...+.+.+..+|+.+|+|++|.|+.+||...++.+...   ..+++ -+..+++. .  +..|.
T Consensus       171 ~~~~~~~~~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~~~~~~~~~~~-e~~~~~~~~~D~d~dG~  248 (263)
T 2f33_A          171 RLLPVQENFLLKFQG-IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDIN-NISTYKKNIMALSDGGK  248 (263)
T ss_dssp             HHSCTTTCSHHHHHH-TCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHHHHCTTTCCTT-THHHHHHHHHTTSBTTE
T ss_pred             HHHHHHHHHHHHhcC-cchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhccCCCCe
Confidence            66543       111 12556777788888888888888888887777644320   11222 22334433 2  23466


Q ss_pred             CCHHHHHHhhC
Q psy4132         423 VTVEQFSRLAS  433 (473)
Q Consensus       423 ls~~e~a~~~~  433 (473)
                      |+..||...+.
T Consensus       249 i~~~EF~~~~~  259 (263)
T 2f33_A          249 LYRTDLALILS  259 (263)
T ss_dssp             ECGGGTHHHHC
T ss_pred             EcHHHHHHHHh
Confidence            88888877654

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=99.63  E-value=1.6e-15  Score=135.77  Aligned_cols=149  Identities=18%  Similarity=0.330  Sum_probs=118.1

Q ss_pred             HHHHHHHHHhhhh------hhhHHHHHHHH-h-------hhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccc
Q psy4132         166 SSNINNAFKDLNQ------LMSMAKEMVEI-S-------KNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI  231 (473)
Q Consensus       166 ~~~l~eaF~~lD~------~~e~~~~l~~l-g-------~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~  231 (473)
                      ..+++++|..+|.      ..++...|+.+ |       ..++..  +...++.  .+|.|++|.|+|+||+.++.    
T Consensus         3 ~~~l~~~F~~~Dd~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~eF~~~~~----   74 (173)
T 1alv_A            3 VRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGID--TCRSMVA--VMDSDTTGKLGFEEFKYLWN----   74 (173)
T ss_dssp             HHHHHHHHHHHHGGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHH--HHHHHHH--HHCTTCSSSBCHHHHHHHHH----
T ss_pred             hhHHHHHHHHHhCCCCCcCHHHHHHHHHHhhhcccccccCCCCHH--HHHHHHH--HHcCCCCCccCHHHHHHHHH----
Confidence            4568999998874      67778888887 6       444444  4444554  37999999999999999887    


Q ss_pred             cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         232 HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       232 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                            ....++.+|+.+|.+++|+|+.+||+.+. ..+.   ...++.++..+| |++|.|+|+||+.++...      
T Consensus        75 ------~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~------  141 (173)
T 1alv_A           75 ------NIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRL------  141 (173)
T ss_dssp             ------HHHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHH------
T ss_pred             ------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH------
Confidence                  35789999999999999999999999853 3332   245789999999 999999999999999865      


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHH
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAA  337 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~  337 (473)
                       +.+..+|+.+|+|++|.++.. +++++.+
T Consensus       142 -~~~~~~F~~~D~d~~G~i~~~-~~~~l~~  169 (173)
T 1alv_A          142 -DAMFRAFKSLDKDGTGQIQVN-IQEWLQL  169 (173)
T ss_dssp             -HHHHHHHHHHSSSCCSEEEEE-HHHHHHH
T ss_pred             -HHHHHHHHHhCCCCCCeecHh-HHHHHHH
Confidence             789999999999999666554 5554433

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=99.63  E-value=1.4e-15  Score=136.48  Aligned_cols=140  Identities=24%  Similarity=0.355  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...+...++.+|..+|.|++|.|+.+||..+. .++.   ...+..++..+|.|++|.|+|+||+.++..........+.
T Consensus         6 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~   85 (179)
T 2f2o_A            6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE   85 (179)
T ss_dssp             CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHccCcccHHH
Confidence            34577889999999999999999999999953 3332   2357899999999999999999999998776444455678


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|+.||.|++|.++..   |+..++..                    . | ..++++++..+|..+|.|+||.|+++
T Consensus        86 ~~~~F~~~D~d~~G~I~~~---E~~~~l~~--------------------~-g-~~~~~~~~~~~~~~~D~~~dg~i~~~  140 (179)
T 2f2o_A           86 IREAFRVFDKDGNGYISAA---ELRHVMTN--------------------L-G-EKLTDEEVDEMIREADIDGDGQVNYE  140 (179)
T ss_dssp             HHHHHHHHCTTCSSEECHH---HHHHHHHH--------------------C----CCCHHHHHHHHHHHCTTCSSSEEHH
T ss_pred             HHHHHHHhCCCCCCcCcHH---HHHHHHHH--------------------h-C-CCCCHHHHHHHHHHcCCCCCCcCcHH
Confidence            9999999999999666553   33333332                    1 1 14889999999999999999999999


Q ss_pred             hhhccceee
Q psy4132         391 TYSSGVKVL  399 (473)
Q Consensus       391 EF~~~~~vl  399 (473)
                      ||...+...
T Consensus       141 eF~~~~~~~  149 (179)
T 2f2o_A          141 EFVQMMTAK  149 (179)
T ss_dssp             HHHHHSCC-
T ss_pred             HHHHHHHHc
Confidence            999888644

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=99.63  E-value=1.1e-15  Score=139.55  Aligned_cols=151  Identities=17%  Similarity=0.294  Sum_probs=118.9

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      .+++++|..+|+       ..++...|..++..++..  ++...+.  .+|.|++|.|+|+||+.++.          ..
T Consensus        27 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~--~~~~l~~--~~D~d~dG~I~~~EF~~~~~----------~~   92 (191)
T 1y1x_A           27 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLA--TTEKLLH--MYDKNHSGEITFDEFKDLHH----------FI   92 (191)
T ss_dssp             SCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHH--HHHHHHH--HHCTTCSSSBCHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhCCCCCCeEcHHHHHHHHH----------HH
Confidence            358999999998       566777776555556555  4555544  37999999999999999876          34


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      ..++.+|+.+|.|++|+|+.+||+.+.. .+   ....++.++..+|.|++|.|+|+||+.++...       +.+..+|
T Consensus        93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~-------~~~~~~F  165 (191)
T 1y1x_A           93 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV-------CRVRNVF  165 (191)
T ss_dssp             HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH-------HHHHHHH
Confidence            6899999999999999999999999643 32   23458899999999999999999999999865       7889999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHh
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALI  339 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~  339 (473)
                      +.+|.|++|.+ .-.++|++.++.
T Consensus       166 ~~~D~d~dG~i-~~~~~eF~~~~~  188 (191)
T 1y1x_A          166 AFYDRERTGQV-TFTFDTFIGGSV  188 (191)
T ss_dssp             HHHCTTCCSEE-EEEHHHHHHHHH
T ss_pred             HHhCcCCCceE-EeeHHHHHHHHH
Confidence            99999999553 223355555543

>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A

Probab=99.62  E-value=1.4e-15  Score=140.12  Aligned_cols=146  Identities=19%  Similarity=0.203  Sum_probs=127.4

Q ss_pred             chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCC--CCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeee
Q psy4132         324 DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGL--ELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQL  401 (473)
Q Consensus       324 g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~--~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~  401 (473)
                      |-|..++..++.+++......+||+|++.|+++.+++++|.  +.+|++|+..+++.+..-|+| +....|- +.++++.
T Consensus        70 gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g-~~v~~~~-g~~~VqS  147 (234)
T 3cuq_A           70 GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTG-FGIIPVG-GTYLIQS  147 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTT-CEEEEET-TEEEEEC
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCC-eEEEEEC-CEEEEEe
Confidence            46777778999999999888999999999999999999997  789999999999999988765 6666665 7778887


Q ss_pred             cccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc--ccccccccccCcc
Q psy4132         402 KSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI--EGLRFYENKFLLE  471 (473)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~--~g~~~~~n~~~~~  471 (473)
                      .+......-..++++++..+++|..+++..++|+...|++.|+.++..|.+|||++.  ++.+||||.|.+.
T Consensus       148 vp~el~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Yw~P~lf~~~  219 (234)
T 3cuq_A          148 VPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDL  219 (234)
T ss_dssp             SCCCCCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEEECTTSSCCC
T ss_pred             CCCccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCCCcceeecchhhccc
Confidence            776555556678888888899999999999999999999999999999999999987  4567899999753

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=99.62  E-value=1.2e-15  Score=142.61  Aligned_cols=156  Identities=12%  Similarity=0.103  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|+       ..++...|+.+|..++..  +...++.  .+|.|++|.|+|+||+.++.        
T Consensus        47 ~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~--~~~~l~~--~~D~d~dg~I~~~EF~~~~~--------  114 (220)
T 3sjs_A           47 LDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQ--TALRMMR--IFDTDFNGHISFYEFMAMYK--------  114 (220)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGGGBCCCHH--HHHHHHH--HHCTTCSSCBCHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhCCCCCCcCCHHHHHHHHH--------
Confidence            4455678999999998       677777777888777766  5555554  37999999999999999887        


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                        ....+..+|+.+|.|++|+|+.+||+.+. ..+   ....++.+++.+| |++|.|+|+||+.++..+       ..+
T Consensus       115 --~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l-------~~~  184 (220)
T 3sjs_A          115 --FMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFA-------AQT  184 (220)
T ss_dssp             --HHHHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHH-------HHH
T ss_pred             --HHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH-------HHH
Confidence              24779999999999999999999999963 333   2335889999999 999999999999999877       578


Q ss_pred             HHHhHHh-cCCCCc---hhhHhhHHHHHHHHhc
Q psy4132         312 KFAFRIY-DIDNDD---DYYQALGNELIAALIE  340 (473)
Q Consensus       312 ~~~F~~~-D~d~dg---~~~~~e~~el~~~L~~  340 (473)
                      +.+|+.+ |.+++|   .++.-.+++++.++..
T Consensus       185 ~~~F~~~~D~~~~G~i~~~~~i~~~ef~~~~~~  217 (220)
T 3sjs_A          185 RSAYQMIFMNPYYGPMKPFNPMEFGKFLDVVTS  217 (220)
T ss_dssp             HHHHHHHHTSGGGCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCcccccceeHHHHHHHHHH
Confidence            9999999 999996   2223334666666553

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=99.62  E-value=4.7e-15  Score=132.32  Aligned_cols=138  Identities=20%  Similarity=0.279  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhc----c-hhccC---CHHHH-----------HHHHHhcCCCCCcccHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMS----L-PELQQ---NPLVQ-----------RVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~----l-~~~~~---~~~~~-----------~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ..+.+.++.+|+.+|.|++|+|+.+||..    + ..++.   ...+.           .++..+|.|++|.|+|+||+.
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~   82 (176)
T 1nya_A            3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIR   82 (176)
T ss_dssp             SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            45678999999999999999999999998    3 22332   22333           789999999999999999999


Q ss_pred             HHhhcccCCCc-------HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCH
Q psy4132         297 GVSQFSVKGDR-------ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSP  369 (473)
Q Consensus       297 ~l~~~~~~~~~-------~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~  369 (473)
                      ++.........       .+.++.+|+.+|.|++|.+...   ++..++                    ... |   +++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~---e~~~~l--------------------~~~-g---~~~  135 (176)
T 1nya_A           83 VTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD---EFAAWL--------------------TAL-G---MSK  135 (176)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHH---HHHHHH--------------------HHT-T---CCH
T ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHH---HHHHHH--------------------HHh-C---CCH
Confidence            99877555443       4668999999999999555553   333333                    222 2   678


Q ss_pred             HHHHHHHHHhccCCCCCeeHHhhhccceeee
Q psy4132         370 EDLLNSCLALDKLPDSPIYLKTYSSGVKVLQ  400 (473)
Q Consensus       370 ~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~  400 (473)
                      +++..+|+.+|.|+||.|+++||...+..+.
T Consensus       136 ~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~  166 (176)
T 1nya_A          136 AEAAEAFNQVDTNGNGELSLDELLTAVRDFH  166 (176)
T ss_dssp             HHHHHHHHHHCTTCSSEEEHHHHHHHHSCCS
T ss_pred             HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHh
Confidence            8999999999999999999999998876443

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=99.62  E-value=4.2e-15  Score=132.79  Aligned_cols=150  Identities=24%  Similarity=0.278  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ....+++.+|+.+|.|++|+|+.+||..+. ..+    ....+..++..+|.+++|.|+|+||+.++...       +.+
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-------~~~   76 (172)
T 2znd_A            4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-------TDW   76 (172)
T ss_dssp             --CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-------HHH
T ss_pred             cchhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHH
Confidence            355789999999999999999999999954 333    22357899999999999999999999988754       679


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.+|.|++|.+...   ++..++.                    .. | ..++++++..+++.+|.|+||.|+++|
T Consensus        77 ~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~~~dg~i~~~e  131 (172)
T 2znd_A           77 QNVFRTYDRDNSGMIDKN---ELKQALS--------------------GF-G-YRLSDQFHDILIRKFDRQGRGQIAFDD  131 (172)
T ss_dssp             HHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHCTTCSSSEEHHH
T ss_pred             HHHHHHHCCCCCCccCHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhCCCCCCcCcHHH
Confidence            999999999999655553   3333332                    21 2 147888999999999999999999999


Q ss_pred             hhccceeeeecccCcHHHHHHHHHHHhh--CCCCCHH
Q psy4132         392 YSSGVKVLQLKSCEDASFVEKTYEIVSQ--NVFVTVE  426 (473)
Q Consensus       392 F~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~ls~~  426 (473)
                      |...+..+        ..+..+++.++.  .|.||..
T Consensus       132 F~~~~~~~--------~~~~~~F~~~D~d~dG~i~~~  160 (172)
T 2znd_A          132 FIQGCIVL--------QRLTDIFRRYDTDQDGWIQVS  160 (172)
T ss_dssp             HHHHHHHH--------HHHHHHHHHHCTTSSSCCCCC
T ss_pred             HHHHHHHH--------HHHHHHHHHhCCCCCCeEeee
Confidence            98876532        344556666654  3567643

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=99.62  E-value=5.1e-15  Score=128.20  Aligned_cols=136  Identities=13%  Similarity=0.220  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHh---cCCCCCcccHHHHHHHHhhc--ccCC
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIF---DEDRNGEVDFKEFIQGVSQF--SVKG  305 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~---D~d~dG~I~~~EF~~~l~~~--~~~~  305 (473)
                      +..+...++.+|..+|.+++|+|+.+||..+. .++.   ...+..++..+   |.++ |.|+|+||+.++...  ....
T Consensus         3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~~~~~~~   81 (149)
T 2mys_C            3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAAANNKDQ   81 (149)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHHhccCCc
Confidence            34677889999999999999999999999853 3332   33578899999   9999 999999999999876  4555


Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      ...+.+..+|+.||.|++|.+...   ++..++.                    .. | ..++++++..++.. |.|++|
T Consensus        82 ~~~~~~~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~-d~~~dg  135 (149)
T 2mys_C           82 GTFEDFVEGLRVFDKEGNGTVMGA---ELRHVLA--------------------TL-G-EKMTEEEVEELMKG-QEDSNG  135 (149)
T ss_pred             chHHHHHHHHHHhCCCCCceEcHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHhh-CCCCCC
Confidence            677889999999999999655553   3333332                    21 2 14889999999999 999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||...+.
T Consensus       136 ~i~~~eF~~~~~  147 (149)
T 2mys_C          136 CINYEAFVKHIM  147 (149)
T ss_pred             cEeHHHHHHHHh
Confidence            999999987653

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=99.61  E-value=1.7e-15  Score=133.35  Aligned_cols=139  Identities=25%  Similarity=0.318  Sum_probs=110.1

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCC---
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD---  306 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~---  306 (473)
                      ....+...++.+|..+|.+++|.|+..||..+. .++   ....+..++..+|.+++|.|+|+||+.++........   
T Consensus        14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~   93 (162)
T 1top_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGK   93 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccc
Confidence            456678899999999999999999999999953 333   2335789999999999999999999999876543322   


Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.++.+|+.+|.|++|.+..   +++..++.                    .. | ..++++++..+|..+|.|+||.
T Consensus        94 ~~~~~~~~F~~~D~d~~G~I~~---~e~~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~~~dg~  148 (162)
T 1top_A           94 SEEELANCFRIFDKNADGFIDI---EELGEILR--------------------AT-G-EHVTEEDIEDLMKDSDKNNDGR  148 (162)
T ss_dssp             HHHHHHHHHHHHCTTCSSCBCH---HHHHHHHH--------------------TT-T-CCCCHHHHHHHHHHHCTTCSSS
T ss_pred             cHHHHHHHHHHhCCCCCCcCcH---HHHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhCCCCCCc
Confidence            5677899999999999955555   33333333                    22 2 2488999999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...+.
T Consensus       149 i~~~eF~~~~~  159 (162)
T 1top_A          149 IDFDEFLKMME  159 (162)
T ss_dssp             BCHHHHHHHHH
T ss_pred             CcHHHHHHHHh
Confidence            99999987764

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=99.61  E-value=3.6e-15  Score=134.66  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=114.3

Q ss_pred             cchHHHHHHHHHHHhhCC-----CC-C--CCccHHHHhcchhccCCHHHHHHHHHhcCCCCCc-ccHHHHHHHHhhcccC
Q psy4132         234 KMVVDIRRLGKRFRKLDL-----DN-S--GALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGE-VDFKEFIQGVSQFSVK  304 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~-----d~-~--G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~-I~~~EF~~~l~~~~~~  304 (473)
                      ....+...++.+|..+|.     ++ +  |.|+.+||..+..++..+...+++..+|.+++|. |+|+||+.++......
T Consensus        14 ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~l~~~g~~~~~~~l~~~~D~d~~G~~I~~~EF~~~~~~~~~~   93 (183)
T 1dgu_A           14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDT   93 (183)
T ss_dssp             CCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHTSTTSSSCTTHHHHHHHHSCSSSSCCCCHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHHHHhhhcCcHHHHHHHHhCCCCCCCEecHHHHHHHHHHhcCC
Confidence            345678889999999999     68 8  9999999999666777778889999999999999 9999999999887666


Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHH----HHHHhc
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLN----SCLALD  380 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~----~~~~~D  380 (473)
                      ....+.++.+|+.||.|++|.+...|+..++..+...   .                 ....++++++..    +|..+|
T Consensus        94 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~D  153 (183)
T 1dgu_A           94 ATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGE---G-----------------EDTRLSASEMKQLIDNILEESD  153 (183)
T ss_dssp             CCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSS---S-----------------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcc---c-----------------ccCCCCHHHHHHHHHHHHHHhC
Confidence            6667899999999999999777765444444333210   0                 001255666665    899999


Q ss_pred             cCCCCCeeHHhhhccce
Q psy4132         381 KLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       381 ~~~dg~Is~~EF~~~~~  397 (473)
                      .|+||.|+++||...+.
T Consensus       154 ~d~dG~I~~~EF~~~~~  170 (183)
T 1dgu_A          154 IDRDGTINLSEFQHVIS  170 (183)
T ss_dssp             TTSSSEEEHHHHHHHHC
T ss_pred             CCCCCeEcHHHHHHHHH
Confidence            99999999999987665

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=99.61  E-value=4.2e-15  Score=135.18  Aligned_cols=138  Identities=18%  Similarity=0.234  Sum_probs=102.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHh-----cc-hhccCCH--------HHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFM-----SL-PELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~-----~l-~~~~~~~--------~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ...+...++.+|+.+|.|++|+|+.+||.     .+ ..++..+        .+..++..+|.|++|.|+|+||+.++..
T Consensus        15 s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~   94 (195)
T 1qv0_A           15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQ   94 (195)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHHH
Confidence            56778899999999999999999999998     43 3444433        3677999999999999999999998876


Q ss_pred             cccC------CCcHHHHH----HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHH
Q psy4132         301 FSVK------GDRESKLK----FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPE  370 (473)
Q Consensus       301 ~~~~------~~~~e~l~----~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~  370 (473)
                      ....      ....+.++    .+|+.||.|++|.++..|+..   ++                    ... | ..++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~---~l--------------------~~~-g-~~~~~~  149 (195)
T 1qv0_A           95 LATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKA---YG--------------------KIS-G-ISPSQE  149 (195)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHH---HH--------------------HHH-S-SCCCHH
T ss_pred             HHhhhhhcccccHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHH---HH--------------------HHh-C-CCCCHH
Confidence            5321      11222343    899999999996555533333   33                    222 2 147899


Q ss_pred             HHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         371 DLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       371 ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ++..+|+.+|.|+||.|+++||...+.
T Consensus       150 ~~~~~~~~~D~d~dg~i~~~eF~~~~~  176 (195)
T 1qv0_A          150 DCEATFRHCDLDNAGDLDVDEMTRQHL  176 (195)
T ss_dssp             HHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            999999999999999999999998776

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=99.61  E-value=2.5e-16  Score=136.77  Aligned_cols=131  Identities=16%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHh-cCCCCCcccHHHHHHHHhhc--c---cCCCcHHH
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIF-DEDRNGEVDFKEFIQGVSQF--S---VKGDRESK  310 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~-D~d~dG~I~~~EF~~~l~~~--~---~~~~~~e~  310 (473)
                      .++.+|..+|.|++|+|+.+||..++ .++.   ...+..++..+ |.+++|.|+|.||+.++...  .   ......+.
T Consensus         5 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~   84 (148)
T 1m45_A            5 ANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTED   84 (148)
T ss_dssp             CCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHH
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccccHHH
Confidence            46778999999999999999999853 3332   23588999999 99999999999999999877  3   45667788


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.|++|.++..   ++..++.                    .. | ..++++++..+++.+|.|+||.|+++
T Consensus        85 ~~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~d~dg~i~~~  139 (148)
T 1m45_A           85 FVKAFQVFDKESTGKVSVG---DLRYMLT--------------------GL-G-EKLTDAEVDELLKGVEVDSNGEIDYK  139 (148)
T ss_dssp             HHHHHHTTCSSSSSEEEHH---HHHHHHH--------------------HS-T-TCCCHHHHHHHHTTCCCCTTSEEEHH
T ss_pred             HHHHHHHhCCCCCCcCCHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhCCCCCCeEeHH
Confidence            9999999999999655553   3333333                    21 2 14889999999999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      ||...+
T Consensus       140 eF~~~~  145 (148)
T 1m45_A          140 KFIEDV  145 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.61  E-value=9.7e-16  Score=171.71  Aligned_cols=143  Identities=17%  Similarity=0.239  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ..++++|+.+|+       ..++...|..+|..++..  +...++..  +| |++|.|+|+||+.++..          .
T Consensus       607 ~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~l~~~--~~~~l~~~--~d-d~dg~I~~~eF~~~~~~----------~  671 (900)
T 1qxp_A          607 RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQ--LHQVIVAR--FA-DDELIIDFDNFVRCLVR----------L  671 (900)
T ss_dssp             HHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECCHH--HHHHHHHH--TS-CSSSBCCHHHHHHHHHH----------H
T ss_pred             HHHHHHHHhhCCCCCCeECHHHHHHHHHHhCCCCCHH--HHHHHHHH--hC-CCCCeEcHHHHHHHHHH----------H
Confidence            679999999998       788888999999888776  56656554  68 89999999999988762          2


Q ss_pred             HHHHHHHHhhCCCC----------------------------------------------------------CCCccHHH
Q psy4132         240 RRLGKRFRKLDLDN----------------------------------------------------------SGALSIDE  261 (473)
Q Consensus       240 ~~l~~~F~~~D~d~----------------------------------------------------------~G~Is~~e  261 (473)
                      ..+..+|+.+|.++                                                          +|.|+.+|
T Consensus       672 ~~l~~~F~~~D~d~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~G~Is~~E  751 (900)
T 1qxp_A          672 EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDMEVSATE  751 (900)
T ss_dssp             HHHHHHHHHSCSSCCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTCSSCBCHHH
T ss_pred             HHHHHHHHhhCCCCCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCCCCccCHHH
Confidence            34444444444444                                                          45556667


Q ss_pred             Hhcchhc-c-----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHh
Q psy4132         262 FMSLPEL-Q-----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQA  329 (473)
Q Consensus       262 l~~l~~~-~-----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~  329 (473)
                      |+.++.. +           ....++.+++.+|.|++|.|+|+||+.++...       ..++.+|+.||.|++|.+...
T Consensus       752 l~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~~~~-------~~l~~~F~~~D~d~dG~Is~~  824 (900)
T 1qxp_A          752 LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-------KKWQGIYKRFETDRSGTIGSN  824 (900)
T ss_dssp             HTTTSCC----CCSCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHHHHH-------HHHSSCC----CCSCC-----
T ss_pred             HHHHHHHhcccccccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHHHHH-------HHHHHHHHHhCCCCCCccCHH
Confidence            7664322 1           11346677777777777777777777776554       356667777777777655554


Q ss_pred             hH
Q psy4132         330 LG  331 (473)
Q Consensus       330 e~  331 (473)
                      |+
T Consensus       825 El  826 (900)
T 1qxp_A          825 EL  826 (900)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=99.61  E-value=2.7e-15  Score=130.07  Aligned_cols=129  Identities=24%  Similarity=0.377  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ++..+++++|..||+       ..++...|+++|..++..  ++..++..  +|.+++|.|+|+||+.++....   ...
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~--~~~~~~~~--~d~~~~g~i~~~eF~~~~~~~~---~~~   75 (143)
T 2obh_A            3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKE--EIKKMISE--IDKEGTGKMNFGDFLTVMTQKM---SEK   75 (143)
T ss_dssp             HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHH--HHHHHHHH--HTTTCCSEEEHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCeeeHHHHHHHHHHHh---ccc
Confidence            345679999999998       789999999999988877  66666653  7999999999999999876211   122


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .....++.+|+.||.|++|+|+.+||+.+. .++   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        76 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~~  142 (143)
T 2obh_A           76 DTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK  142 (143)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            345789999999999999999999999964 333   234689999999999999999999998773

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=99.61  E-value=1.5e-15  Score=155.22  Aligned_cols=164  Identities=22%  Similarity=0.299  Sum_probs=123.9

Q ss_pred             ccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHH
Q psy4132         205 TEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDI  280 (473)
Q Consensus       205 ~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~  280 (473)
                      ....+|.+.+|.+...++.....    ......+.+.++++|+.+|.|++|.|+.+||+.++ .++   ....++.+++.
T Consensus       281 s~k~iD~de~g~i~~~e~~~~~~----~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~  356 (450)
T 3sg6_A          281 ELKGIDFKEDGNILGHKLEYNTR----DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE  356 (450)
T ss_dssp             EEEEESCCTTSTTTTTCBCCC-------CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred             ccccCCccccccchhhhhhhhhc----ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            34457888888887777643111    23456678899999999999999999999999954 333   23358899999


Q ss_pred             hcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHh
Q psy4132         281 FDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINR  360 (473)
Q Consensus       281 ~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~  360 (473)
                      +|.|++|.|+|+||+.++..........+.++.+|+.||.|++|.++..   |+..+|.                    .
T Consensus       357 ~D~DgdG~IsfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~e---ELr~~L~--------------------~  413 (450)
T 3sg6_A          357 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA---ELRHVMT--------------------N  413 (450)
T ss_dssp             TCTTSSSSEEHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------H
T ss_pred             hccCCCCcccHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeHH---HHHHHHH--------------------H
Confidence            9999999999999999998876777778899999999999999666654   3333332                    2


Q ss_pred             hhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         361 ARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       361 ~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      + | ..++++++..++..+|.|+||.|+++||+..++
T Consensus       414 l-G-~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~  448 (450)
T 3sg6_A          414 L-G-EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  448 (450)
T ss_dssp             H-T-CCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred             h-C-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            2 2 148899999999999999999999999987654

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=99.61  E-value=1.6e-15  Score=132.49  Aligned_cols=131  Identities=23%  Similarity=0.415  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +++..+|+++|..+|+       ..++...++.++.+++..  ++...+..  +|.+++|.|+|.||+..+....   ..
T Consensus         6 ~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~--~~~~~~~~--~d~~~~g~i~~~ef~~~~~~~~---~~   78 (148)
T 2lmt_A            6 EEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEA--ELQDLIAE--AENNNNGQLNFTEFCGIMAKQM---RE   78 (148)
T ss_dssp             SHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHH--HHHHHHHH--HHTTSTTEEEHHHHHHHHHHTT---TT
T ss_pred             HHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHH--HHHHHHHh--cccCCCCcccHHHHHHHHHHHh---cc
Confidence            3455689999999998       789999999999999887  66655543  7999999999999999886322   22


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ....+.++.+|+.||.|++|+|+.+||+.++ .++   ....++.+++.+|.|++|.|+|+||+.+|+.
T Consensus        79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m~~  147 (148)
T 2lmt_A           79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQ  147 (148)
T ss_dssp             TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc
Confidence            3345679999999999999999999999853 333   2335899999999999999999999998864

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=99.60  E-value=1.8e-15  Score=132.71  Aligned_cols=137  Identities=20%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHhhCC--CCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccC-CCc
Q psy4132         235 MVVDIRRLGKRFRKLDL--DNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK-GDR  307 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~--d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~-~~~  307 (473)
                      +..+...++.+|..+|.  +++|+|+.+||..++ .++..   ..+..+ ..+|.+++|.|+|.||+.++...... ...
T Consensus         4 s~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~   82 (156)
T 1wdc_C            4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQGT   82 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCCC
T ss_pred             CHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHHhhccCCh
Confidence            45678899999999999  999999999999853 33332   346777 88999999999999999999887654 667


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHH--hccCCCC
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLA--LDKLPDS  385 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~--~D~~~dg  385 (473)
                      .+.++.+|+.||.|++|.+...   ++..++.                    .. | ..++++++..+++.  +|.|++|
T Consensus        83 ~~~l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~~~D~d~dg  137 (156)
T 1wdc_C           83 FADYMEAFKTFDREGQGFISGA---ELRHVLT--------------------AL-G-ERLSDEDVDEIIKLTDLQEDLEG  137 (156)
T ss_dssp             HHHHHHHHHTTCSSSSSEEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHHHHTCCCCTTS
T ss_pred             HHHHHHHHHHhCCCCCCcCcHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHhCCCCCCCC
Confidence            8899999999999999655553   3333333                    21 2 14889999999999  9999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||...+.
T Consensus       138 ~i~~~eF~~~~~  149 (156)
T 1wdc_C          138 NVKYEDFVKKVM  149 (156)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             cEeHHHHHHHHh
Confidence            999999987765

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=99.60  E-value=3.8e-15  Score=138.66  Aligned_cols=144  Identities=24%  Similarity=0.373  Sum_probs=114.2

Q ss_pred             cchHHHHHHHHHHHhhCC-----CC-C--CCccHHHHhcchhccCCHHHHHHHHHhcCCCCCc-ccHHHHHHHHhhcccC
Q psy4132         234 KMVVDIRRLGKRFRKLDL-----DN-S--GALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGE-VDFKEFIQGVSQFSVK  304 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~-----d~-~--G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~-I~~~EF~~~l~~~~~~  304 (473)
                      ....++..+..+|..+|.     |+ +  |.|+.+||..+..++.++..++++..+|.|++|. |+|+||+.++......
T Consensus        45 ~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~l~~lg~~~~~~~lf~~~D~d~dG~~I~f~EF~~~~~~~~~~  124 (214)
T 2l4h_A           45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDT  124 (214)
T ss_dssp             CCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTTCHHHHTSTTHHHHHHHHCCSSSCCSEEHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHHhhccCCChHHHHHHHHhCcCCCCCEecHHHHHHHHHHHcCC
Confidence            456788899999999998     66 6  9999999999767777788889999999999999 9999999999987665


Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHH----HHHHhc
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLN----SCLALD  380 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~----~~~~~D  380 (473)
                      ...++.++.+|+.||.|++|.+...|+..++..+..   ..                 +...++++++..    +|+.+|
T Consensus       125 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~---~~-----------------~~~~~s~~e~~~~~~~~~~~~D  184 (214)
T 2l4h_A          125 ATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTG---EG-----------------EDTRLSASEMKQLIDNILEESD  184 (214)
T ss_dssp             SCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH---SS-----------------SCTTCSCTHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhc---cc-----------------cCCCCCHHHHHHHHHHHHHHhC
Confidence            666789999999999999976666544444333321   00                 001255555554    899999


Q ss_pred             cCCCCCeeHHhhhccce
Q psy4132         381 KLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       381 ~~~dg~Is~~EF~~~~~  397 (473)
                      .|+||.|+++||...+.
T Consensus       185 ~d~dG~Is~~EF~~~~~  201 (214)
T 2l4h_A          185 IDRDGTINLSEFQHVIS  201 (214)
T ss_dssp             CSCCSSBCSHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHH
Confidence            99999999999987664

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.5e-15  Score=135.30  Aligned_cols=123  Identities=14%  Similarity=0.205  Sum_probs=98.6

Q ss_pred             hhhHHHHHHHH------hhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC
Q psy4132         179 LMSMAKEMVEI------SKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD  252 (473)
Q Consensus       179 ~~e~~~~l~~l------g~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d  252 (473)
                      ..++...|+++      +..++..  ++..++..  +|.|++|.|+|+||+.++.          ....++.+|+.|| |
T Consensus        23 ~~EL~~~l~~l~~~~~~g~~~~~~--~~~~l~~~--~D~d~~G~I~f~EF~~~~~----------~~~~l~~aF~~fD-d   87 (174)
T 2i7a_A           23 ATQLQGLLNQELLTGPPGDMFSLD--ECRSLVAL--MELKVNGRLDQEEFARLWK----------RLVHYQHVFQKVQ-T   87 (174)
T ss_dssp             HHHHHHHHHHHHC-----CCCCHH--HHHHHHHH--HCSSCSSEECHHHHHHHHH----------HHHHHHHHHHHHC-S
T ss_pred             HHHHHHHHHHHHhccCCCCCCCHH--HHHHHHHH--HCCCCCCcCCHHHHHHHHH----------HHHHHHHHHHHhc-C
Confidence            34566667776      4455544  45555543  8999999999999999876          3468999999999 9


Q ss_pred             CCCCccHHHHhcch-hc----cC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCc
Q psy4132         253 NSGALSIDEFMSLP-EL----QQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD  324 (473)
Q Consensus       253 ~~G~Is~~el~~l~-~~----~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg  324 (473)
                      ++|+|+.+||+.+. .+    +.   ...++.++..+| |++|.|+|+||+.++...       +.+..+|+.+|+|++|
T Consensus        88 ~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~~~-------~~~~~~F~~~D~d~~G  159 (174)
T 2i7a_A           88 SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMRL-------EAMAKTFRNLSKDGKG  159 (174)
T ss_dssp             BTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHHHH-------HHHHHHHHHHCSSSSC
T ss_pred             CCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHHHH-------HHHHHHHHHhCCCCCC
Confidence            99999999999853 33    32   235789999999 999999999999998765       6789999999999997

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=99.60  E-value=5.2e-15  Score=134.01  Aligned_cols=138  Identities=19%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHh-----cc-hhccCCH--------HHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFM-----SL-PELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~-----~l-~~~~~~~--------~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ...+..+++.+|+.+|.|++|+|+.+||.     .+ ..++..+        .++.++..+|.|++|.|+|+||+.++..
T Consensus        11 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~   90 (191)
T 1uhk_A           11 NPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKK   90 (191)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHHHHH
Confidence            45678899999999999999999999998     43 3344333        3677999999999999999999998876


Q ss_pred             cccC------CCcHHHHH----HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHH
Q psy4132         301 FSVK------GDRESKLK----FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPE  370 (473)
Q Consensus       301 ~~~~------~~~~e~l~----~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~  370 (473)
                      ....      ....+.++    .+|+.+|.|++|.++..|+..   ++.                    .. | ..++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~---~l~--------------------~~-g-~~~~~~  145 (191)
T 1uhk_A           91 LATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKA---YTK--------------------AA-G-IIQSSE  145 (191)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHH---HHH--------------------HH-T-SCCSHH
T ss_pred             HhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHH---HHH--------------------Hh-C-CCCCHH
Confidence            5321      12223333    899999999996555543333   332                    21 2 147899


Q ss_pred             HHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         371 DLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       371 ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ++..+++.+|.|+||.|+++||...+.
T Consensus       146 ~~~~~~~~~D~d~dG~i~~~eF~~~~~  172 (191)
T 1uhk_A          146 DCEETFRVCDIDESGQLDVDEMTRQHL  172 (191)
T ss_dssp             HHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            999999999999999999999998776

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=99.60  E-value=1e-15  Score=140.55  Aligned_cols=139  Identities=20%  Similarity=0.271  Sum_probs=101.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...+...++.+|+.+|.|++|.|+.+||..++ ..+   ....+..++..+|.+++|.|+|+||+.++... .....++.
T Consensus        52 ~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~-~~~~~~~~  130 (197)
T 3pm8_A           52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDK-QTYLKKEV  130 (197)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTTCCH-HHHCSHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH-HhhhhHHH
Confidence            34567889999999999999999999999953 232   34568999999999999999999999887655 33445789


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.|++|.++.   +|+..++.....                   | ..++++++..+++.+|.|+||.|+++
T Consensus       131 l~~~F~~~D~d~~G~Is~---~El~~~l~~~~~-------------------~-~~~~~~~~~~l~~~~D~d~dG~Is~~  187 (197)
T 3pm8_A          131 CLIPFKFFDIDGNGKISV---EELKRIFGRDDI-------------------E-NPLIDKAIDSLLQEVDLNGDGEIDFH  187 (197)
T ss_dssp             HHHHHHHHCTTCSSEECH---HHHHHHHC-----------------------C-CHHHHHHHHHHHHHHCTTCSSSEEHH
T ss_pred             HHHHHHHHCCCCCCCCCH---HHHHHHHHhccc-------------------C-CCCCHHHHHHHHHHHcCCCCCcCcHH
Confidence            999999999999966666   444444432100                   1 12567889999999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...++
T Consensus       188 EF~~~l~  194 (197)
T 3pm8_A          188 EFMLMMS  194 (197)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=99.60  E-value=3.1e-15  Score=137.86  Aligned_cols=167  Identities=18%  Similarity=0.278  Sum_probs=124.1

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-cc----CCHHHHHHHHHhc
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFD  282 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D  282 (473)
                      ++.+++|.|+.+++..++...      .....++..+|+.||.+ ++|.|+.+||..++. ++    ....+..+|..+|
T Consensus         8 mg~~~~g~l~~~el~~~~~~~------~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D   81 (207)
T 2d8n_A            8 MGNSKSGALSKEILEELQLNT------KFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFD   81 (207)
T ss_dssp             CTTCCTTCCCHHHHHHHHHHS------SCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHC
T ss_pred             hccccCCCCCHHHHHHHHHHc------CCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence            678899999999999887621      13567888899999998 799999999999643 22    2335789999999


Q ss_pred             CCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCC----CccchhHHHHHH
Q psy4132         283 EDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAG----GTMLLTDAYCRI  358 (473)
Q Consensus       283 ~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~----g~i~l~d~~~~~  358 (473)
                      .|++|.|+++||+.++.... .....+.++.+|+.||.|++|.+...|+   ..++.......+    ..++-.      
T Consensus        82 ~d~~G~i~~~Ef~~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~I~~~E~---~~~l~~~~~~~g~~~~~~l~~~------  151 (207)
T 2d8n_A           82 SNLDGTLDFKEYVIALHMTT-AGKTNQKLEWAFSLYDVDGNGTISKNEV---LEIVMAIFKMITPEDVKLLPDD------  151 (207)
T ss_dssp             TTCCSEEEHHHHHHHHHHHS-CSSSSTTHHHHHHHHCTTCSSEECHHHH---HHHHHHHHHHSCHHHHHTSCTT------
T ss_pred             CCCCCeEeHHHHHHHHHHHc-CCCHHHHHHHHHHHhcCCCCCeEcHHHH---HHHHHHHHHHhccccCCCcccc------
Confidence            99999999999999998763 3456678999999999999977777444   444433211000    000000      


Q ss_pred             HhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         359 NRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       359 ~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                            +....+++..+|+.+|.|+||.|+++||...+.
T Consensus       152 ------~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  184 (207)
T 2d8n_A          152 ------ENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL  184 (207)
T ss_dssp             ------TSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHH
T ss_pred             ------cccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence                  012346688999999999999999999998775

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=99.59  E-value=5.6e-15  Score=131.00  Aligned_cols=134  Identities=18%  Similarity=0.245  Sum_probs=105.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CH---HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~---~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ...+...++.+|..+|.|++|+|+.+||..++ .++. .+   .+..++..    .+|.|+|+||+.++..........+
T Consensus        20 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~----~dg~i~~~eF~~~~~~~~~~~~~~~   95 (166)
T 2mys_B           20 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE----ASGPINFTVFLTMFGEKLKGADPED   95 (166)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH----CCCCcCHHHHHHHHHHHhccCCcHH
Confidence            45678889999999999999999999999953 3443 33   34555554    3899999999999988766667889


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||.|++|.++..   ++..++.                    .. | ..++++++..+|..+|.|+||.|++
T Consensus        96 ~l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~D~d~dg~I~~  150 (166)
T 2mys_B           96 VIMGAFKVLDPDGKGSIKKS---FLEELLT--------------------TG-G-GRFTPEEIKNMWAAFPPDVAGNVDY  150 (166)
T ss_pred             HHHHHHHHhCCCCCcceeHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHhcCCCCCCeEeH
Confidence            99999999999999655553   3333333                    21 2 1488999999999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...+.
T Consensus       151 ~eF~~~~~  158 (166)
T 2mys_B          151 KNICYVIT  158 (166)
T ss_pred             HHHHHHHH
Confidence            99987764

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=99.59  E-value=5.6e-15  Score=133.31  Aligned_cols=133  Identities=20%  Similarity=0.355  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCC-HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQN-PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~-~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      ..+...++.+|+.+|.|++|+|+.+||..++ .++.. ..+..++..+|.|++|.|+|+||+.++.....  ..++.+..
T Consensus        35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~--~~~~~~~~  112 (180)
T 3mse_B           35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRWKN--IESTFLKA  112 (180)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEECHHHHHHHHSCCTT--C--CHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhccc--CCHHHHHH
Confidence            4567899999999999999999999999953 34433 35889999999999999999999998876533  23478999


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC--------C
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD--------S  385 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d--------g  385 (473)
                      +|+.||.|++|.++.   +|+..++.                       + ..++++++..+++.+|.|+|        |
T Consensus       113 ~F~~~D~d~~G~I~~---~El~~~l~-----------------------~-~~~~~~~~~~~~~~~d~~~d~~~~~~~~G  165 (180)
T 3mse_B          113 AFNKIDKDEDGYISK---SDIVSLVH-----------------------D-KVLDNNDIDNFFLSVHSIKKGIPREHIIN  165 (180)
T ss_dssp             HHHHHCTTCSSCBCH---HHHHHHTT-----------------------T-SSCCHHHHHHHHHHHHTC---------CC
T ss_pred             HHHHHCCCCCCCCCH---HHHHHHHc-----------------------C-CCCCHHHHHHHHHHhhhccCcccccccCC
Confidence            999999999955555   34443333                       1 14889999999999999998        9


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||...++
T Consensus       166 ~i~~~eF~~~l~  177 (180)
T 3mse_B          166 KISFQEFKDYML  177 (180)
T ss_dssp             CBCHHHHHHHHH
T ss_pred             eeeHHHHHHHHH
Confidence            999999987653

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=99.59  E-value=3.2e-15  Score=137.96  Aligned_cols=135  Identities=15%  Similarity=0.145  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-----CCHHHHHHH-------HHhcCCCCCcccHHHHHHHHh---
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-----QNPLVQRVI-------DIFDEDRNGEVDFKEFIQGVS---  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-----~~~~~~~l~-------~~~D~d~dG~I~~~EF~~~l~---  299 (473)
                      ..+...++.+|+.+|.|++|.|+.+||..++. ++     ....+..++       ..+|.|++|.|+|+||+.++.   
T Consensus        32 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~~~lf~~~D~d~dg~i~~~EF~~~~~~~~  111 (208)
T 2hpk_A           32 PKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFA  111 (208)
T ss_dssp             ----CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCBTTTBEEGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHh
Confidence            44567899999999999999999999998532 22     234577888       999999999999999999986   


Q ss_pred             ------hcccCCCcHHH-HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHH
Q psy4132         300 ------QFSVKGDRESK-LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDL  372 (473)
Q Consensus       300 ------~~~~~~~~~e~-l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei  372 (473)
                            .........+. ++.+|+.||.|++|.++..   |+..++.                    . .|   ++++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~---El~~~l~--------------------~-~g---~~~~~~  164 (208)
T 2hpk_A          112 EAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVD---ELKTMMK--------------------A-FD---VPQEAA  164 (208)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSSBCHH---HHHHHHH--------------------H-TT---SCTTHH
T ss_pred             hhhhhhhccCChHHHHHHHHHHHHHhCCCCCCcCCHH---HHHHHHH--------------------H-hC---cCHHHH
Confidence                  33233333444 8999999999999555553   3333332                    2 12   667789


Q ss_pred             HHHHHHhccCCCCCeeHHhhhccce
Q psy4132         373 LNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       373 ~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ..+|..+|.|+||.|+++||...+.
T Consensus       165 ~~~~~~~D~d~dG~I~~~EF~~~~~  189 (208)
T 2hpk_A          165 YTFFEKADTDKSGKLERTELVHLFR  189 (208)
T ss_dssp             HHHHHHHCTTCCSSBCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            9999999999999999999998775

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=99.59  E-value=1.1e-15  Score=146.41  Aligned_cols=198  Identities=14%  Similarity=0.115  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-----hccC--CH---HHH----HHHHHhcCCCCCcccHHHHHHHHhh--
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-----ELQQ--NP---LVQ----RVIDIFDEDRNGEVDFKEFIQGVSQ--  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-----~~~~--~~---~~~----~l~~~~D~d~dG~I~~~EF~~~l~~--  300 (473)
                      ...++++.+|+.+|.|++|+|+.+||..++     .++.  .+   .+.    .+|..+|.|++|.|+|+||+.++..  
T Consensus         8 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~   87 (272)
T 2be4_A            8 LDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQE   87 (272)
T ss_dssp             CCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEHHHHHHHHSCHH
T ss_pred             cCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeHHHHHHHHhhhh
Confidence            445678888888888888888888888753     2333  21   232    3457778888888888888887421  


Q ss_pred             --------cccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHH---------------------hchhhcCCCccch
Q psy4132         301 --------FSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAAL---------------------IEPLTSAGGTMLL  351 (473)
Q Consensus       301 --------~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L---------------------~~~~~~~~g~i~l  351 (473)
                              ........+.++.+|+.||.|++|.++..|+..++..+                     .....+.+|.|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~~  167 (272)
T 2be4_A           88 ENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDL  167 (272)
T ss_dssp             HHHHHHHHHHSCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEEEH
T ss_pred             HHHHHHHhhccCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCCCCcCcH
Confidence                    11234556778888888888888777776665554432                     1122344567777


Q ss_pred             hHHHHHHHhhhC------C----CCCCHHHHHHHHHHhccCCCCCeeHHhhhccceeeee---cccCcHHH---HHHHHH
Q psy4132         352 TDAYCRINRARG------L----ELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVLQL---KSCEDASF---VEKTYE  415 (473)
Q Consensus       352 ~d~~~~~~~~~g------~----~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl~~---~~~~~~~~---~~~~~~  415 (473)
                      .++...+.....      .    ...+.+++..+|+.+|+|++|.|+.+||...++.+..   ...+++.+   +..+++
T Consensus       168 ~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  247 (272)
T 2be4_A          168 NDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLT  247 (272)
T ss_dssp             HHHGGGSCCSSCSSTTSCCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHhhhhhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            776554432000      0    0133456778888888888888888888877764432   01222221   223555


Q ss_pred             HHhh--CCCCCHHHHHHhhCC
Q psy4132         416 IVSQ--NVFVTVEQFSRLASV  434 (473)
Q Consensus       416 ~~~~--~~~ls~~e~a~~~~~  434 (473)
                      .++.  +|.||..||.+.+..
T Consensus       248 ~~D~d~dG~is~~EF~~~~~~  268 (272)
T 2be4_A          248 HCDMNKDGKIQKSELALCLGL  268 (272)
T ss_dssp             HHCCSTTCEEEHHHHHHHTTC
T ss_pred             HhCCCCCCcCcHHHHHHHHcc
Confidence            5543  467888888877654

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=99.58  E-value=6.2e-15  Score=129.28  Aligned_cols=137  Identities=15%  Similarity=0.261  Sum_probs=105.2

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      ....+...++.+|+.+|.+++|+|+.+||..++ .++..+....+...+ .+++|.|+|+||+.++..........+.++
T Consensus        12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~-~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~   90 (156)
T 1wdc_B           12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML-KEAPGPLNFTMFLSIFSDKLSGTDSEETIR   90 (156)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHH-TTSSSCCCHHHHHHHHHHHTCSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH-HhCCCcCcHHHHHHHHHHHhcCCChHHHHH
Confidence            345678899999999999999999999999853 444333322222222 357999999999999987766677889999


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|+.||.|++|.++..   ++..++.                    .. | ..++++++..+++.+|.| ||.|+++||
T Consensus        91 ~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~~-dg~i~~~eF  144 (156)
T 1wdc_B           91 NAFAMFDEQETKKLNIE---YIKDLLE--------------------NM-G-DNFNKDEMRMTFKEAPVE-GGKFDYVKF  144 (156)
T ss_dssp             HHHHTTCTTCCSCEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHHHCCEE-TTEECHHHH
T ss_pred             HHHHHHCcCCCCccCHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHhcCCC-CCEEeHHHH
Confidence            99999999999655553   3333333                    22 2 148899999999999999 999999999


Q ss_pred             hccce
Q psy4132         393 SSGVK  397 (473)
Q Consensus       393 ~~~~~  397 (473)
                      ...+.
T Consensus       145 ~~~~~  149 (156)
T 1wdc_B          145 TAMIK  149 (156)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87664

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=99.58  E-value=9.9e-15  Score=132.47  Aligned_cols=137  Identities=12%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             chHHHHHHHHHHHhh-CCCCCCCccHHHHhcch-hc----c---CCHHHHHHH-----------HHhcCCCCCcccHHHH
Q psy4132         235 MVVDIRRLGKRFRKL-DLDNSGALSIDEFMSLP-EL----Q---QNPLVQRVI-----------DIFDEDRNGEVDFKEF  294 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~-D~d~~G~Is~~el~~l~-~~----~---~~~~~~~l~-----------~~~D~d~dG~I~~~EF  294 (473)
                      .....++++.+|+.+ |.|++|+|+.+||..+. ..    +   ....+..++           ..+|.|++|.|+++||
T Consensus         7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef   86 (191)
T 2ccm_A            7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW   86 (191)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence            456778899999999 99999999999999853 22    2   234566676           9999999999999999


Q ss_pred             HHHHhhccc--------CCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCC
Q psy4132         295 IQGVSQFSV--------KGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLEL  366 (473)
Q Consensus       295 ~~~l~~~~~--------~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~  366 (473)
                      +.++.....        .....+.+..+|+.+|.|++|.++.                       .|+...+... |   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~-----------------------~E~~~~l~~~-g---  139 (191)
T 2ccm_A           87 LKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDK-----------------------HEYSTVYMSY-G---  139 (191)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCH-----------------------HHHHHHHHTT-T---
T ss_pred             HHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcH-----------------------HHHHHHHHHh-C---
Confidence            999877532        1223467899999999999955554                       3333333222 3   


Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhcccee
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      ++++++..+|+.+|.|+||.|+++||...++.
T Consensus       140 ~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~  171 (191)
T 2ccm_A          140 IPKSDCDAAFDTLSDGGKTMVTREIFARLWTE  171 (191)
T ss_dssp             CCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            77889999999999999999999999987763

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=99.58  E-value=1.1e-14  Score=129.07  Aligned_cols=142  Identities=14%  Similarity=0.234  Sum_probs=114.1

Q ss_pred             HHHhhhh-------hhhHHHHHHHHhh-----hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         172 AFKDLNQ-------LMSMAKEMVEISK-----NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       172 aF~~lD~-------~~e~~~~l~~lg~-----~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      +|..+|+       ..++...|+.+|.     .++..  ++..++.  .+|.|++|.|+|+||+.++.          ..
T Consensus         4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~eF~~~~~----------~~   69 (165)
T 1k94_A            4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLE--TCRIMIA--MLDRDHTGKMGFNAFKELWA----------AL   69 (165)
T ss_dssp             HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHH--HHHHHHH--HHCTTCSSCBCHHHHHHHHH----------HH
T ss_pred             HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHH--HHHHHHH--HhCCCCCCcCCHHHHHHHHH----------HH
Confidence            6888887       6788888999887     34544  4555554  37999999999999999877          34


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      ..++.+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+  |++|.|+|+||+.++...       +.+..+|
T Consensus        70 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~-------~~~~~~F  140 (165)
T 1k94_A           70 NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY--SKNGRIFFDDYVACCVKL-------RALTDFF  140 (165)
T ss_dssp             HHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH--CBTTBCBHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH-------HHHHHHH
Confidence            789999999999999999999999953 333   233578888888  899999999999999876       7899999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHH
Q psy4132         316 RIYDIDNDDDYYQALGNELIAA  337 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~  337 (473)
                      +.+|+|++|.++.. +++++..
T Consensus       141 ~~~D~d~~G~i~~~-~~~~l~~  161 (165)
T 1k94_A          141 RKRDHLQQGSANFI-YDDFLQG  161 (165)
T ss_dssp             HTTCTTCCSEEEEE-HHHHHHH
T ss_pred             HHhCCCCCCeEeee-HHHHHHH
Confidence            99999999766654 5555544

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=99.58  E-value=1.9e-14  Score=134.84  Aligned_cols=143  Identities=24%  Similarity=0.365  Sum_probs=111.6

Q ss_pred             cchHHHHHHHHHHHhhCCC--CCCCccHHHHhcchhcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         234 KMVVDIRRLGKRFRKLDLD--NSGALSIDEFMSLPELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d--~~G~Is~~el~~l~~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      ....+...++.+|..+|.|  ++|.|+.+||..++...   ....+..+|..+|.|++|.|+|+||+.++..........
T Consensus        42 ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~  121 (226)
T 2zfd_A           42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID  121 (226)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHH
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhccCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHH
Confidence            4567788999999999999  99999999999964321   233577899999999999999999999998876666778


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHH----HHHHHhccCCC
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLL----NSCLALDKLPD  384 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~----~~~~~~D~~~d  384 (473)
                      +.++.+|+.||.|++|.+...   |+..++......                 .| ..++++++.    .+|+.+|.|+|
T Consensus       122 ~~l~~~F~~~D~d~~G~Is~~---E~~~~l~~~~~~-----------------~g-~~~~~~~~~~~~~~~f~~~D~d~d  180 (226)
T 2zfd_A          122 DKIHFSFQLYDLKQQGFIERQ---EVKQMVVATLAE-----------------SG-MNLKDTVIEDIIDKTFEEADTKHD  180 (226)
T ss_dssp             HHHHHHHHHHCTTSSSSEEHH---HHHHHHHHHHHH-----------------TT-CCCCHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHHhCCCCCCcccHH---HHHHHHHHHHHH-----------------cC-CCCCHHHHHHHHHHHHHHhCCCCC
Confidence            899999999999999766664   444444322111                 12 136666654    45679999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||...+.
T Consensus       181 G~I~~~EF~~~~~  193 (226)
T 2zfd_A          181 GKIDKEEWRSLVL  193 (226)
T ss_dssp             SEECHHHHHHHHH
T ss_pred             CcCcHHHHHHHHH
Confidence            9999999987765

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=99.57  E-value=4.8e-15  Score=134.38  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-----------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-----------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-----------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ...+...++.+|+.+|.|++|.|+.+||..+.. .           +   ....+..++..+|.|++|.|+|+||+.++.
T Consensus        35 ~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~  114 (191)
T 3khe_A           35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCM  114 (191)
T ss_dssp             CTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            456778899999999999999999999998532 2           1   123478899999999999999999999886


Q ss_pred             hcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q psy4132         300 QFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLAL  379 (473)
Q Consensus       300 ~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~  379 (473)
                      .. ......+.+..+|+.+|.|++|.++.   +|+..++.                       | ..++++++..+|..+
T Consensus       115 ~~-~~~~~~~~~~~~F~~~D~d~~G~I~~---~E~~~~l~-----------------------~-~~~~~~~~~~~~~~~  166 (191)
T 3khe_A          115 DK-QLLLSRERLLAAFQQFDSDGSGKITN---EELGRLFG-----------------------V-TEVDDETWHQVLQEC  166 (191)
T ss_dssp             CH-HHHCCHHHHHHHHHHHCTTCSSEECH---HHHHHHTT-----------------------S-SCCCHHHHHHHHHHH
T ss_pred             Hh-cccchHHHHHHHHHHHCCCCcCcCCH---HHHHHHHc-----------------------c-CCCCHHHHHHHHHHh
Confidence            54 33455678999999999999955555   33333332                       1 148899999999999


Q ss_pred             ccCCCCCeeHHhhhccce
Q psy4132         380 DKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       380 D~~~dg~Is~~EF~~~~~  397 (473)
                      |.|+||.|+++||...+.
T Consensus       167 D~~~dg~i~~~eF~~~~~  184 (191)
T 3khe_A          167 DKNNDGEVDFEEFVEMMQ  184 (191)
T ss_dssp             CTTCSSSEEHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHH
Confidence            999999999999987764

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=99.57  E-value=1.3e-14  Score=129.08  Aligned_cols=142  Identities=14%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             HHHhhhh-------hhhHHHHHHHHhh-----hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         172 AFKDLNQ-------LMSMAKEMVEISK-----NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       172 aF~~lD~-------~~e~~~~l~~lg~-----~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      +|..+|+       ..++...|+.+|.     .++..  ++..++.  .+|.|++|.|+|+||+.++.          ..
T Consensus         6 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~eF~~~~~----------~~   71 (167)
T 1gjy_A            6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLE--TCRLMVS--MLDRDMSGTMGFNEFKELWA----------VL   71 (167)
T ss_dssp             HHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHH--HHHHHHH--HHCTTCCSCBCHHHHHHHHH----------HH
T ss_pred             HHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHH--HHHHHHH--HHCCCCCCcCCHHHHHHHHH----------HH
Confidence            6888888       6888888999886     34444  4454544  37999999999999999887          34


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      ..++.+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+  |++|.|+|+||+.++...       +.+..+|
T Consensus        72 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~-------~~~~~~F  142 (167)
T 1gjy_A           72 NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKITFDDYIACCVKL-------RALTDSF  142 (167)
T ss_dssp             HHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT--CBTTBEEHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh--CcCCcCcHHHHHHHHHHH-------HHHHHHH
Confidence            789999999999999999999999854 333   234578899988  889999999999999776       7899999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHH
Q psy4132         316 RIYDIDNDDDYYQALGNELIAA  337 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~  337 (473)
                      +.+|+|++|.++.. +++++.+
T Consensus       143 ~~~D~d~~G~i~~~-~~~~l~~  163 (167)
T 1gjy_A          143 RRRDSAQQGMVNFS-YDDFIQC  163 (167)
T ss_dssp             HHHCTTCCSEEEEE-HHHHHHH
T ss_pred             HHhCCCCCeeEEee-HHHHHHH
Confidence            99999999766654 5555544

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=99.57  E-value=3.4e-14  Score=129.45  Aligned_cols=108  Identities=18%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCc
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~  288 (473)
                      +|.|++|.|+++||..++..    .........+..+|+.+|.|++|.|+.+||..+....  ..+..+|+.+|.|++|.
T Consensus        36 ~D~d~~G~I~~~El~~~l~~----~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~--~~~~~~F~~~D~d~~G~  109 (191)
T 1y1x_A           36 VDTDGSGAISVPELNAALSS----AGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI--LSMREGFRKRDSSGDGR  109 (191)
T ss_dssp             HCTTCSSSBCHHHHHHHHCB----TTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH--HHHHHHHHHHCTTSSSC
T ss_pred             HcCCCCCcCcHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH--HHHHHHHHHhCCCCCCe
Confidence            45555555555555555521    0011223444555555555555555555555432211  23445555555555555


Q ss_pred             ccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCC
Q psy4132         289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND  323 (473)
Q Consensus       289 I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~d  323 (473)
                      |+.+||..++... .....++.+..+|+.+|.|++
T Consensus       110 i~~~e~~~~l~~~-g~~~~~~~~~~~~~~~D~d~d  143 (191)
T 1y1x_A          110 LDSNEVRAALLSS-GYQVSEQTFQALMRKFDRQRR  143 (191)
T ss_dssp             BCHHHHHHHHHTT-SCCCCHHHHHHHHHHHCTTCS
T ss_pred             EcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCC
Confidence            5555555555443 223344455555555555555

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.57  E-value=4.7e-15  Score=127.95  Aligned_cols=128  Identities=21%  Similarity=0.282  Sum_probs=100.8

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcch-hccCCH---HHHHHHHHhcCCCCCcccHHHHHHHHhhcc-cCCCcHHHHHHHhH
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLP-ELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFS-VKGDRESKLKFAFR  316 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~---~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~-~~~~~~e~l~~~F~  316 (473)
                      ++.+|+.+|.|++|.|+.+||..+. .++..+   .+..++..   +++|.|+|+||+.++.... ......+.++.+|+
T Consensus         7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~   83 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ---LNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFR   83 (145)
T ss_dssp             HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH---HTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHH
Confidence            9999999999999999999999853 344333   35566665   8899999999999998765 45556788999999


Q ss_pred             HhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         317 IYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       317 ~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .+|.|++|.+...   ++..++.                    .. | ..++++++..+++.+|.|+||.|+++||...+
T Consensus        84 ~~D~d~~G~i~~~---e~~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  138 (145)
T 2bl0_B           84 ALDKEGNGTIQEA---ELRQLLL--------------------NL-G-DALTSSEVEELMKEVSVSGDGAINYESFVDML  138 (145)
T ss_dssp             HHCSSSSSEEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHH
T ss_pred             HhCCCCCCeEcHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            9999999655553   3333333                    22 2 14789999999999999999999999998766


Q ss_pred             e
Q psy4132         397 K  397 (473)
Q Consensus       397 ~  397 (473)
                      .
T Consensus       139 ~  139 (145)
T 2bl0_B          139 V  139 (145)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=99.57  E-value=1.4e-14  Score=127.84  Aligned_cols=133  Identities=20%  Similarity=0.240  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-----hccC---CHHHH-----------HHHHHhcCCCCCcccHHHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-----ELQQ---NPLVQ-----------RVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-----~~~~---~~~~~-----------~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      +.+.++.+|+.+|.|++|+|+.+||..+.     .++.   ...+.           .++..+|.|++|.|+|+||+.++
T Consensus         2 ~~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~   81 (166)
T 3akb_A            2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGA   81 (166)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTH
T ss_pred             HHHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            35689999999999999999999999842     2232   22333           45799999999999999999988


Q ss_pred             hhcccCCCc------HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHH
Q psy4132         299 SQFSVKGDR------ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDL  372 (473)
Q Consensus       299 ~~~~~~~~~------~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei  372 (473)
                      .........      .+.+..+|+.+|.|++|.++.                       .++...+... |   ++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~-----------------------~E~~~~l~~~-~---~~~~~~  134 (166)
T 3akb_A           82 VKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTV-----------------------ADTARALTAF-G---VPEDLA  134 (166)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHCSSSSSCCBH-----------------------HHHHHHHHHT-T---CCHHHH
T ss_pred             HHHhccCccchHHHHHHHHHHHHHHhCCCCCCcCCH-----------------------HHHHHHHHHh-C---CCHHHH
Confidence            776433211      344899999999999855544                       3333333322 2   778899


Q ss_pred             HHHHHHhccCCCCCeeHHhhhccce
Q psy4132         373 LNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       373 ~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ..+|+.+|.|+||.|+++||...+.
T Consensus       135 ~~~~~~~D~d~dg~i~~~ef~~~~~  159 (166)
T 3akb_A          135 RQAAAALDTDGDGKVGETEIVPAFA  159 (166)
T ss_dssp             HHHHHHHCTTCSSBCCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            9999999999999999999987764

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=99.57  E-value=5.2e-15  Score=147.99  Aligned_cols=133  Identities=25%  Similarity=0.392  Sum_probs=109.2

Q ss_pred             HHhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         160 EKQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       160 ~~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      +..+++..+|+++|+.||+       ..++...|+++|..++..  ++..++..  +|.|++|.|+|+||+.++....  
T Consensus       295 ~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~Tee--EI~~Lf~~--~D~DgDG~IdFeEFl~lms~~l--  368 (440)
T 3u0k_A          295 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMINE--VDADGDGTIDFPEFLIMMARKM--  368 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHH--HHHHHHHH--HCSSCSSSEEHHHHHHHHHTC---
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCcCcHHHHHHHHHHHh--
Confidence            4456677889999999999       789999999999999887  77776654  8999999999999999887321  


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                       ......+.++++|+.||.|++|+|+.+||+.++ .++   ....++.+++.+|.|+||.|+|+||+.+|.
T Consensus       369 -k~~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkmMt  438 (440)
T 3u0k_A          369 -KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  438 (440)
T ss_dssp             ------CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHC
T ss_pred             -cCCChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHhC
Confidence             223345689999999999999999999999964 333   234689999999999999999999999885

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=99.56  E-value=1.1e-14  Score=133.31  Aligned_cols=134  Identities=14%  Similarity=0.169  Sum_probs=106.8

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHH---HHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~---~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+...++.+|..+|.|++|+|+..||..++ .++..+.   +..++..+    +|.|+|+||+.++..........+
T Consensus        51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~~~~~~~~~~~  126 (196)
T 3dtp_E           51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA----PGPINFTMFLTIFGDRIAGTDEED  126 (196)
T ss_dssp             SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----SSCCBHHHHHHHHHHCCCSSCCHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----cCCCcHHHHHHHHHHHhcCCCcHH
Confidence            345678899999999999999999999999953 4444333   45555554    899999999999988777777889


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .+..+|+.||.|++|.++..   +|..+| .                     .| ..++++++..+|..+|.|+||.|++
T Consensus       127 ~l~~~F~~~D~d~~G~Is~~---El~~~l-~---------------------~g-~~~~~~~~~~l~~~~D~d~dG~I~~  180 (196)
T 3dtp_E          127 VIVNAFNLFDEGDGKCKEET---LKRSLT-T---------------------WG-EKFSQDEVDQALSEAPIDGNGLIDI  180 (196)
T ss_dssp             HHHHHHHTTCSSSSCCBHHH---HHHHHH-H---------------------SS-SCCCHHHHHHHHHSSCEETTEECHH
T ss_pred             HHHHHHHHHCCCCCCcCcHH---HHHHHH-H---------------------cC-CCCCHHHHHHHHHHcCCCCCCEEeH
Confidence            99999999999999655553   333333 1                     12 1488999999999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||+..++
T Consensus       181 ~EF~~~l~  188 (196)
T 3dtp_E          181 KKFAQILT  188 (196)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            99998775

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=99.56  E-value=5.6e-15  Score=135.50  Aligned_cols=155  Identities=23%  Similarity=0.269  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ......++.+|+.+|.|++|+|+.+||..++ .++   ....+..++..+|.|++|.|+|+||+.++.... .....+.+
T Consensus        33 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~-~~~~~~~~  111 (204)
T 3e3r_A           33 ASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPM-SQAREAVI  111 (204)
T ss_dssp             -------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTSCCC-CHHHHHHH
T ss_pred             chhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHhhc-CchHHHHH
Confidence            3456788999999999999999999999953 333   233588999999999999999999999886542 22346789


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhcc-CCCCCeeHH
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDK-LPDSPIYLK  390 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~-~~dg~Is~~  390 (473)
                      ..+|+.||.|++|.++.   +|+..++....        .+.+      ..| ...+.+++..+|+.+|. |+||.|+++
T Consensus       112 ~~~F~~~D~d~~G~I~~---~El~~~l~~~~--------~~~~------~~~-~~~~~~~~~~~~~~~D~~d~dg~Is~~  173 (204)
T 3e3r_A          112 AAAFAKLDRSGDGVVTV---DDLRGVYSGRA--------HPKV------RSG-EWTEDEVLRRFLDNFDSSEKDGQVTLA  173 (204)
T ss_dssp             HHHHHHHCTTCSSEECH---HHHHHHCCCTT--------CHHH------HTT-SSCHHHHHHHHHHHHSCSSCCSCEEHH
T ss_pred             HHHHHHhCcCCCCeEeH---HHHHHHHcccc--------CCcc------ccC-CCChHHHHHHHHHHhhccCCCCcCcHH
Confidence            99999999999976666   45555554210        0000      012 23667778999999998 999999999


Q ss_pred             hhhccceeeeecccCcHHH
Q psy4132         391 TYSSGVKVLQLKSCEDASF  409 (473)
Q Consensus       391 EF~~~~~vl~~~~~~~~~~  409 (473)
                      ||...+.-+.....+++.+
T Consensus       174 EF~~~~~~~~~~~~~d~~f  192 (204)
T 3e3r_A          174 EFQDYYSGVSASMNTDEEF  192 (204)
T ss_dssp             HHHHHHHHHHHHCSSHHHH
T ss_pred             HHHHHHHHcCccCCChHHH
Confidence            9998887655444444443

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=99.56  E-value=1.5e-14  Score=131.15  Aligned_cols=165  Identities=25%  Similarity=0.396  Sum_probs=120.1

Q ss_pred             CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-ccC----CHHHHHHHHHhcCCCC
Q psy4132         213 RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-LQQ----NPLVQRVIDIFDEDRN  286 (473)
Q Consensus       213 ~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~~~----~~~~~~l~~~~D~d~d  286 (473)
                      .+|.++-+++..+...      ......++..+|+.+|.+ ++|.|+.+||..+.. ++.    ...+..+|..+|.|++
T Consensus         4 ~~~~l~~~el~~~~~~------~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~   77 (190)
T 2l2e_A            4 SQSKLSQDQLQDLVRS------TRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKN   77 (190)
T ss_dssp             SSCCSCHHHHHHHHHH------HCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSST
T ss_pred             ccccCCHHHHHHHHHh------cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCC
Confidence            3566777777666542      112456788999999999 899999999999643 221    2357889999999999


Q ss_pred             CcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCC
Q psy4132         287 GEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLEL  366 (473)
Q Consensus       287 G~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~  366 (473)
                      |.|++.||+.++.... .....+.+..+|+.+|.|++|.+...|+..++..+.......   .          .....+.
T Consensus        78 G~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~---~----------~~~~~~~  143 (190)
T 2l2e_A           78 GYIDFKEFICALSVTS-RGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSM---V----------KLPEDED  143 (190)
T ss_dssp             TCEEHHHHHHHHTTSS-CSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHH---S----------CCCSSCC
T ss_pred             CeEeHHHHHHHHHHHc-CCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccc---c----------Ccccccc
Confidence            9999999999998763 456678999999999999997777754444333321100000   0          0000123


Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .+.+++..+|+.+|.|+||.|+++||...+.
T Consensus       144 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  174 (190)
T 2l2e_A          144 TPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK  174 (190)
T ss_dssp             CTHHHHHHHHHHHTCCSSCCBCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            6788899999999999999999999987664

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=99.56  E-value=1.6e-14  Score=132.32  Aligned_cols=146  Identities=14%  Similarity=0.246  Sum_probs=116.7

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhh-----hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISK-----NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~-----~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      .++++ |..+|+       ..++...|+.++.     .++..  ++..++.  .+|.|++|.|+|+||+.++.       
T Consensus        33 ~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~--~~~~l~~--~~D~d~~g~i~~~eF~~~~~-------  100 (198)
T 1juo_A           33 DPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLE--TCRLMVS--MLDRDMSGTMGFNEFKELWA-------  100 (198)
T ss_dssp             CTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHH--HHHHHHH--HHCTTCSSCEEHHHHHHHHH-------
T ss_pred             HHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHH--HHHHHHH--HhCCCCCCeECHHHHHHHHH-------
Confidence            35788 998888       6888889999886     34444  4454544  37999999999999999887       


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                         ....++.+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+  |++|.|+|+||+.++...       +.
T Consensus       101 ---~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~~-------~~  168 (198)
T 1juo_A          101 ---VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKL-------RA  168 (198)
T ss_dssp             ---HHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHHH-------HH
T ss_pred             ---HHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH-------HH
Confidence               34789999999999999999999999854 333   234588899999  899999999999999876       67


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAA  337 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~  337 (473)
                      +..+|+.+|+|++|.++.. +++++..
T Consensus       169 ~~~~F~~~D~d~~G~is~~-~~~~l~~  194 (198)
T 1juo_A          169 LTDSFRRRDTAQQGVVNFP-YDDFIQC  194 (198)
T ss_dssp             HHHHHHHTCTTCCSEEEEE-HHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEeec-HHHHHHH
Confidence            8999999999999766654 5555443

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=99.56  E-value=2.7e-14  Score=131.29  Aligned_cols=154  Identities=21%  Similarity=0.341  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         235 MVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ..-..++++.+|+.||.+ ++|.|+.+||..++. ++   ....+..+|..+|.|++|.|+|+||+.++.... .....+
T Consensus        17 t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~-~~~~~~   95 (204)
T 1jba_A           17 GAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVL-RGTLEH   95 (204)
T ss_dssp             CHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHS-SCCCTH
T ss_pred             cCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHHc-cCCHHH
Confidence            345678899999999999 899999999999643 22   223578999999999999999999999998763 445678


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||.|++|.+...|+..++..+...........        ..+..|....+.+++..+|+.+|.|+||.|++
T Consensus        96 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~--------~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~  167 (204)
T 1jba_A           96 KLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV--------EAEQQGKLLTPEEVVDRIFLLVDENGDGQLSL  167 (204)
T ss_dssp             HHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCT--------TSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccc--------cccccCchhhHHHHHHHHHHHhCCCCCCeEcH
Confidence            8999999999999977777544444433321000000000        00111222255677889999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...+.
T Consensus       168 ~Ef~~~~~  175 (204)
T 1jba_A          168 NEFVEGAR  175 (204)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988765

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=99.56  E-value=1.3e-15  Score=132.73  Aligned_cols=137  Identities=18%  Similarity=0.244  Sum_probs=100.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCC--CCCcccHHHHHHHHhhcccC--CC
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDED--RNGEVDFKEFIQGVSQFSVK--GD  306 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d--~dG~I~~~EF~~~l~~~~~~--~~  306 (473)
                      +..+...++.+|..+|.+++|+|+.+||..++ .++.   ...+..++..+|.+  ++|.|+|+||+.++......  ..
T Consensus         5 s~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~~~~~~~~   84 (151)
T 1w7j_B            5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQG   84 (151)
T ss_dssp             ------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC-----
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHHhccCCCC
Confidence            34567789999999999999999999999853 3332   23578899999999  99999999999999876432  23


Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.+..+|+.||.|++|.++..   ++..++.                    .. | ..++++++..+++.+| |+||.
T Consensus        85 ~~~~l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~d-~~dg~  138 (151)
T 1w7j_B           85 TYEDYLEGFRVFDKEGNGKVMGA---ELRHVLT--------------------TL-G-EKMTEEEVETVLAGHE-DSNGC  138 (151)
T ss_dssp             ---CCHHHHHTTCTTSSSEEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHTTCC-CTTSE
T ss_pred             cHHHHHHHHHHhCCCCCCcCcHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHhcc-CCCCe
Confidence            45668889999999999655553   3333332                    22 2 1488999999999999 99999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...++
T Consensus       139 i~~~eF~~~~~  149 (151)
T 1w7j_B          139 INYEAFLKHIL  149 (151)
T ss_dssp             EEHHHHHHHTC
T ss_pred             EeHHHHHHHHh
Confidence            99999987653

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=99.55  E-value=1.3e-14  Score=124.75  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC--CcHHHHHHHh
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG--DRESKLKFAF  315 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~--~~~e~l~~~F  315 (473)
                      .++++.+|+.+|.|++|+|+.+||..+. .++..+....+...+. +++|.|+|+||+.++.......  ...+.++.+|
T Consensus         4 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~-~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F   82 (140)
T 1ggw_A            4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIES-TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGF   82 (140)
T ss_dssp             CTTTHHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCHHHHHHHHT-TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHh-CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHH
Confidence            3468899999999999999999999953 4454444444444444 8999999999999998765432  3458899999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhcc
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSG  395 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~  395 (473)
                      +.||.|++|.++..++..++..+                        | ..++++++..+++.+|. +||.|+++||...
T Consensus        83 ~~~D~d~~G~i~~~el~~~l~~~------------------------g-~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~  136 (140)
T 1ggw_A           83 QVFDKDATGMIGVGELRYVLTSL------------------------G-EKLSNEEMDELLKGVPV-KDGMVNYHDFVQM  136 (140)
T ss_dssp             HTTCSSCSSCCCHHHHHHHHHHH------------------------H-SCSCHHHHHHHHHHTTC-SSCCSTTTHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHHHc------------------------C-CCCCHHHHHHHHHhccC-CCCcEeHHHHHHH
Confidence            99999999655554333333222                        1 14889999999999999 9999999999876


Q ss_pred             c
Q psy4132         396 V  396 (473)
Q Consensus       396 ~  396 (473)
                      +
T Consensus       137 ~  137 (140)
T 1ggw_A          137 I  137 (140)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=99.55  E-value=9.6e-15  Score=129.24  Aligned_cols=135  Identities=23%  Similarity=0.320  Sum_probs=101.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ...+...++.+|..+|.+++|.|+.+||..+. .++.   ...+..++..+|.+++|.|+|.||+.++..... ....+.
T Consensus        22 ~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~  100 (166)
T 2aao_A           22 SEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNK-IEREDH  100 (166)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTTCHH-HHTTHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhh-cccHHH
Confidence            45677889999999999999999999999853 3332   235889999999999999999999998865422 234567


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|+.+|.|++|.+..   .++..++..                    . |   ++++++..++..+|.|++|.|+++
T Consensus       101 ~~~~F~~~D~d~~G~i~~---~e~~~~l~~--------------------~-~---~~~~~~~~~~~~~d~~~dg~i~~~  153 (166)
T 2aao_A          101 LFAAFTYFDKDGSGYITP---DELQQACEE--------------------F-G---VEDVRIEELMRDVDQDNDGRIDYN  153 (166)
T ss_dssp             HHHHHHHHCTTCSSSBCH---HHHHHHTCC--------------------------------CCHHHHHCTTCSSSBCHH
T ss_pred             HHHHHHHhCCCCCCcCcH---HHHHHHHHH--------------------c-C---CCHHHHHHHHHHhCCCCCCcEeHH
Confidence            999999999999955555   344444331                    1 2   567778899999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...+.
T Consensus       154 eF~~~~~  160 (166)
T 2aao_A          154 EFVAMMQ  160 (166)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9987764

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.54  E-value=2.3e-15  Score=137.11  Aligned_cols=135  Identities=24%  Similarity=0.371  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..+...++.+|..+|.|++|.|+.+||..++ .++.   ...+..++..+|.|++|.|+|+||+.++.... .....+.+
T Consensus         6 ~~~~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~-~~~~~~~l   84 (188)
T 1s6i_A            6 EEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLN-KLEREENL   84 (188)
T ss_dssp             CTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSS-SSCCCCST
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHh-ccCHHHHH
Confidence            3456679999999999999999999999853 3332   23578999999999999999999999987652 23445678


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.||.|++|.++.   .|+..++..                     .|   ++++++..+|+.+|.|+||.|+++|
T Consensus        85 ~~~F~~~D~d~dG~Is~---~El~~~l~~---------------------~g---~~~~~~~~~~~~~D~d~dG~Is~~E  137 (188)
T 1s6i_A           85 VSAFSYFDKDGSGYITL---DEIQQACKD---------------------FG---LDDIHIDDMIKEIDQDNDGQIDYGE  137 (188)
T ss_dssp             HHHHHHTTTTCSSEEEH---HHHHHTTTT---------------------TT---CCTTHHHHHHHHHCSSSSSEEETTH
T ss_pred             HHHHHHHCCCCCCcCcH---HHHHHHHHH---------------------cC---CCHHHHHHHHHHHCCCCCCcEeHHH
Confidence            99999999999965555   344444331                     12   5677899999999999999999999


Q ss_pred             hhcccee
Q psy4132         392 YSSGVKV  398 (473)
Q Consensus       392 F~~~~~v  398 (473)
                      |...+.-
T Consensus       138 F~~~~~~  144 (188)
T 1s6i_A          138 FAAMMRK  144 (188)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHH
Confidence            9988763

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=99.54  E-value=1.2e-14  Score=130.56  Aligned_cols=135  Identities=12%  Similarity=0.144  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHhh-CCCCCCCccHHHHhcch-hcc------C-CHHHH-----------HHHHHhcCCCCCcccHHHHH
Q psy4132         236 VVDIRRLGKRFRKL-DLDNSGALSIDEFMSLP-ELQ------Q-NPLVQ-----------RVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~G~Is~~el~~l~-~~~------~-~~~~~-----------~l~~~~D~d~dG~I~~~EF~  295 (473)
                      ....+.++.+|+.+ |.|++|+|+.+||..+. .++      . ...+.           .++..+|.|++|.|+++||+
T Consensus         4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~   83 (185)
T 2sas_A            4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL   83 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence            45678899999999 99999999999998852 222      1 22344           34999999999999999999


Q ss_pred             HHHhhcccC--------CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCC
Q psy4132         296 QGVSQFSVK--------GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELL  367 (473)
Q Consensus       296 ~~l~~~~~~--------~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~l  367 (473)
                      .++......        ....+.++.+|+.+|.|++|.++.   +|+..++..                     .|   +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~---~E~~~~l~~---------------------~g---~  136 (185)
T 2sas_A           84 AMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDL---EEFQNYCKN---------------------FQ---L  136 (185)
T ss_dssp             HHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCH---HHHHHHTTS---------------------SC---C
T ss_pred             HHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcH---HHHHHHHHH---------------------hC---C
Confidence            998766433        234578899999999999955555   333333321                     12   5


Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +++++..+|+.+|.|+||.|+++||...+.
T Consensus       137 ~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~  166 (185)
T 2sas_A          137 QCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             CCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            567789999999999999999999998775

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=99.54  E-value=1.2e-14  Score=129.54  Aligned_cols=133  Identities=17%  Similarity=0.251  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHH----H--------HHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPL----V--------QRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~----~--------~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..+..+++.+|+.+|.|++|+|+.+||..+. .++    ..+.    +        +.++..+|  ++|.|+|+||+.++
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D--~~g~i~~~EF~~~~   79 (174)
T 1q80_A            2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA--GGKGIDETTFINSM   79 (174)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT--TTSCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC--CCCeEcHHHHHHHH
Confidence            3567889999999999999999999999953 233    2332    2        35677888  89999999999999


Q ss_pred             hhcccCC----CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHH
Q psy4132         299 SQFSVKG----DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLN  374 (473)
Q Consensus       299 ~~~~~~~----~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~  374 (473)
                      .......    ...+.++.+|+.+|.|++|.++..                       ++...+... |   ++++++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~-----------------------e~~~~l~~~-g---~~~~~~~~  132 (174)
T 1q80_A           80 KEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRD-----------------------EYGIFFGML-G---LDKTMAPA  132 (174)
T ss_dssp             HHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHH-----------------------HHHHHHHHH-T---CCGGGHHH
T ss_pred             HHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHH-----------------------HHHHHHHHc-C---CCHHHHHH
Confidence            8775422    124778999999999999555553                       333333332 3   67778999


Q ss_pred             HHHHhccCCCCCeeHHhhhccce
Q psy4132         375 SCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       375 ~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +|+.+|.|+||.|+++||...++
T Consensus       133 ~~~~~D~d~dg~i~~~ef~~~~~  155 (174)
T 1q80_A          133 SFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHhCCCCCceEeHHHHHHHHH
Confidence            99999999999999999998775

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=99.54  E-value=4e-14  Score=126.61  Aligned_cols=150  Identities=14%  Similarity=0.222  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hc-c----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-EL-Q----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG  305 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~-~----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~  305 (473)
                      +.++++.+|+.+| +++|.|+.+||..++ .+ +          ....+..++..+|.|++|.|+|+||+.++...    
T Consensus         2 ~~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~----   76 (173)
T 1alv_A            2 EVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI----   76 (173)
T ss_dssp             HHHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH----
T ss_pred             chhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH----
Confidence            4678999999999 999999999999853 22 2          12357899999999999999999999998764    


Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                         +.++.+|+.||.|++|.+...++..++..+                        | ..++++++..++..+| |++|
T Consensus        77 ---~~~~~~F~~~D~d~~G~i~~~el~~~l~~~------------------------g-~~~~~~~~~~~~~~~d-d~dg  127 (173)
T 1alv_A           77 ---KKWQAIYKQFDVDRSGTIGSSELPGAFEAA------------------------G-FHLNEHLYSMIIRRYS-DEGG  127 (173)
T ss_dssp             ---HHHHHHHHHHCTTCCSSBCTTTHHHHHHHH------------------------T-CCCCHHHHHHHHHHHT-CSSS
T ss_pred             ---HHHHHHHHHHCCCCCCCCCHHHHHHHHHHc------------------------C-CCCCHHHHHHHHHHhc-CCCC
Confidence               789999999999999666554333333222                        2 1377888888888888 8899


Q ss_pred             CeeHHhhhccceeeeecccCcHHHHHHHHHHHhhC--CCCCHHHHHH
Q psy4132         386 PIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQN--VFVTVEQFSR  430 (473)
Q Consensus       386 ~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~ls~~e~a~  430 (473)
                      .|+++||...+..+        ..+..+++.++.+  |.||.. +.+
T Consensus       128 ~i~~~eF~~~~~~~--------~~~~~~F~~~D~d~~G~i~~~-~~~  165 (173)
T 1alv_A          128 NMDFDNFISCLVRL--------DAMFRAFKSLDKDGTGQIQVN-IQE  165 (173)
T ss_dssp             CBCHHHHHHHHHHH--------HHHHHHHHHHSSSCCSEEEEE-HHH
T ss_pred             cCcHHHHHHHHHHH--------HHHHHHHHHhCCCCCCeecHh-HHH
Confidence            99999998766432        2344555555443  456655 444

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=99.53  E-value=4.3e-14  Score=122.95  Aligned_cols=129  Identities=24%  Similarity=0.381  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +....++++|..+|+       ..++...|+.+|..++..  ++..++..  +|.|++|.|+|+||+.++....   ...
T Consensus         7 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~l~~~--~d~~~~g~i~~~eF~~~~~~~~---~~~   79 (148)
T 1exr_A            7 EQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMINE--VDADGNGTIDFPEFLSLMARKM---KEQ   79 (148)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHH--HHHHHHHH--HCTTCSSSEEHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--HCCCCCCcCcHHHHHHHHHhcc---cCC
Confidence            345679999999998       688888999999888876  56655543  7999999999999999886311   123


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .....+..+|+.+|++++|+|+.+||+.++ ..+   ....++.++..+|.|++|.|+|+||+.+|.
T Consensus        80 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1exr_A           80 DSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV  146 (148)
T ss_dssp             HHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            455788999999999999999999999864 333   234689999999999999999999999875

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=99.53  E-value=2.9e-15  Score=139.83  Aligned_cols=160  Identities=19%  Similarity=0.147  Sum_probs=116.3

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-h-ccCCH---HHHHHHHH---
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-E-LQQNP---LVQRVIDI---  280 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~-~~~~~---~~~~l~~~---  280 (473)
                      .+.++++++.+.++...+.    ......+...++.+|+.+|.|++|+|+.+||..++ . ++..+   .+..++..   
T Consensus        21 ~~~~~~~~~~~~~l~~~~~----~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~   96 (219)
T 3cs1_A           21 GKKAKDRKEAWERIRQAIP----REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFD   96 (219)
T ss_dssp             CCCHHHHHHHHHHHHHHSC----CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            4455677888999888765    33456788899999999999999999999999743 3 33322   23333332   


Q ss_pred             -----h-cCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHH
Q psy4132         281 -----F-DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDA  354 (473)
Q Consensus       281 -----~-D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~  354 (473)
                           + +.|++|.|+|.||+.++..... ....+.++.+|+.||.|++|.++..|+..++..+..              
T Consensus        97 ~~~~~~~~~d~~g~I~~~EF~~~~~~~~~-~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~--------------  161 (219)
T 3cs1_A           97 KSRTLGSKLENKGSEDFVEFLEFRLMLCY-IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEA--------------  161 (219)
T ss_dssp             HHHHHHHHHHTSCCCSSBCHHHHHHHHHH-HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHH--------------
T ss_pred             HHHhhhhccCCCCcCCHHHHHHHHHHHhc-cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcc--------------
Confidence                 2 3488999999999998754421 134577999999999999976666444433332221              


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         355 YCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       355 ~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                ..++++++..+|+.+|.|+||.|+++||+..+.
T Consensus       162 ----------~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~  194 (219)
T 3cs1_A          162 ----------WGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS  194 (219)
T ss_dssp             ----------HTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred             ----------cCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence                      026667789999999999999999999987665

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=99.52  E-value=9.9e-15  Score=128.50  Aligned_cols=129  Identities=14%  Similarity=0.230  Sum_probs=104.0

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      ..+++..+|++||..||+       ..++...|++||.+++..  +...+      +.+++|.|+|++|+.++....   
T Consensus        10 Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~--~~~~~------~~~~~~~i~f~ef~~~~~~~~---   78 (153)
T 3i5g_B           10 LSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDD--ELNAM------LKECPGQLNFTAFLTLFGEKV---   78 (153)
T ss_dssp             CCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHH--HHHHH------HHTSSSCCCSHHHHHTTTTTT---
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHH--HHHHH------HHhccCCccHHHHHHHHHhhh---
Confidence            345666789999999999       789999999999999987  44443      335678899999999887432   


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......+.++.+|+.||.|++|+|+.+||+.++ .++.   ...++.+++.+|.+ +|.|+|+||+.+|...
T Consensus        79 ~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m~~~  149 (153)
T 3i5g_B           79 SGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKGKA  149 (153)
T ss_dssp             TTCCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHHHCS
T ss_pred             cccccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHhcCC
Confidence            122346789999999999999999999999964 3332   33589999999988 9999999999998653

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=99.52  E-value=2e-14  Score=131.65  Aligned_cols=128  Identities=15%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc--------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                      .+.++++. |..+|.|++|+|+.+||..++ .++        ....++.++..+|.|++|.|+|+||+.++...      
T Consensus        30 ~~~~~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~------  102 (198)
T 1juo_A           30 QTQDPLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL------  102 (198)
T ss_dssp             CCCCTTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH------
T ss_pred             cccHHHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH------
Confidence            35667888 999999999999999999853 322        22357899999999999999999999988765      


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                       +.++.+|+.+|.|++|.+...|+..++..+.                         ..++++++..+++.+  |+||.|
T Consensus       103 -~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g-------------------------~~~~~~~~~~l~~~~--d~dg~i  154 (198)
T 1juo_A          103 -NGWRQHFISFDTDRSGTVDPQELQKALTTMG-------------------------FRLSPQAVNSIAKRY--STNGKI  154 (198)
T ss_dssp             -HHHHHHHHTTCTTCCSEECHHHHHHHHHHTT-------------------------CCCCHHHHHHHHHHT--CSSSSE
T ss_pred             -HHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC-------------------------CCCCHHHHHHHHHHh--CCCCeE
Confidence             7899999999999996666644433332221                         125555666666665  556666


Q ss_pred             eHHhhhccceee
Q psy4132         388 YLKTYSSGVKVL  399 (473)
Q Consensus       388 s~~EF~~~~~vl  399 (473)
                      +++||...+..+
T Consensus       155 ~~~eF~~~~~~~  166 (198)
T 1juo_A          155 TFDDYIACCVKL  166 (198)
T ss_dssp             EHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            666666555433

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=99.51  E-value=7.4e-14  Score=124.11  Aligned_cols=79  Identities=15%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             HHHHhhCCCCCCCccHHHHhcch-hcc--------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         244 KRFRKLDLDNSGALSIDEFMSLP-ELQ--------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       244 ~~F~~~D~d~~G~Is~~el~~l~-~~~--------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      ++|..+|.|++|.|+.+||..+. .++        ....++.++..+|.|++|.|+|+||+.++...       +.++.+
T Consensus         5 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~   77 (167)
T 1gjy_A            5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NGWRQH   77 (167)
T ss_dssp             HHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH-------HHHHHH
Confidence            45777888888888888887743 222        12246778888888888888888888777654       667778


Q ss_pred             hHHhcCCCCchhhHh
Q psy4132         315 FRIYDIDNDDDYYQA  329 (473)
Q Consensus       315 F~~~D~d~dg~~~~~  329 (473)
                      |+.+|.|++|.++..
T Consensus        78 F~~~D~d~~G~i~~~   92 (167)
T 1gjy_A           78 FISFDSDRSGTVDPQ   92 (167)
T ss_dssp             HHHHCTTCCSEECHH
T ss_pred             HHHhCCCCCCcCCHH
Confidence            888888877555553

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=99.51  E-value=6.9e-14  Score=126.98  Aligned_cols=161  Identities=22%  Similarity=0.369  Sum_probs=114.6

Q ss_pred             CceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-ccC----CHHHHHHHHHhcCCCCCc
Q psy4132         215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-LQQ----NPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       215 G~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~~~----~~~~~~l~~~~D~d~dG~  288 (473)
                      ++++-.++..+..      ......+++..+|+.||.+ ++|.|+.+||..++. ++.    ...+..+|..+|.|++|.
T Consensus         6 s~l~~~~l~~l~~------~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~   79 (193)
T 1bjf_A            6 SKLRPEVMQDLLE------STDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT   79 (193)
T ss_dssp             CCCCHHHHHHHHH------HSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSE
T ss_pred             ccCCHHHHHHHHH------HcCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCcCChHHHHHHHHHHhCCCCCCc
Confidence            3455555555433      1123456788899999998 899999999999643 222    235789999999999999


Q ss_pred             ccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCC--ccchhHHHHHHHhhhCCCC
Q psy4132         289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGG--TMLLTDAYCRINRARGLEL  366 (473)
Q Consensus       289 I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g--~i~l~d~~~~~~~~~g~~~  366 (473)
                      |+|.||+.++... ......+.+..+|+.+|.|++|.+...   |+..++.......+.  .++..+            .
T Consensus        80 i~~~Ef~~~~~~~-~~~~~~~~~~~~f~~~D~d~~G~I~~~---E~~~~~~~~~~~~g~~~~~~~~~------------~  143 (193)
T 1bjf_A           80 IDFREFIIALSVT-SRGKLEQKLKWAFSMYDLDGNGYISKA---EMLEIVQAIYKMVSSVMKMPEDE------------S  143 (193)
T ss_dssp             EEHHHHHHHHHHH-TSSCHHHHHHHHHHHHCTTCSSCEEHH---HHHHHHHHHHTTCCCTTTSCGGG------------S
T ss_pred             CcHHHHHHHHHHH-cCCCHHHHHHHHHhhcCCCCCCeECHH---HHHHHHHHHHHHhccccCCCccc------------c
Confidence            9999999999876 345667889999999999999777774   444444332211110  111111            1


Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ...+.+..+|+.+|.|+||.|+++||...+.
T Consensus       144 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  174 (193)
T 1bjf_A          144 TPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK  174 (193)
T ss_dssp             SHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            2245588999999999999999999998764

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.50  E-value=2.8e-14  Score=149.86  Aligned_cols=135  Identities=22%  Similarity=0.281  Sum_probs=109.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hc--------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-EL--------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~--------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~  302 (473)
                      ...+.++++++|+.+|.|++|.|+.+||..++ .+        +   ....++.+|..+|.|++|.|+|+||+.++... 
T Consensus       350 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~-  428 (504)
T 3q5i_A          350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-  428 (504)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH-
T ss_pred             cHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhh-
Confidence            45678899999999999999999999998842 22        1   12358899999999999999999999988765 


Q ss_pred             cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC
Q psy4132         303 VKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL  382 (473)
Q Consensus       303 ~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~  382 (473)
                      .....++.++.+|+.||+|++|.++.   +|+..++..                        ..++++++.++|+.+|.|
T Consensus       429 ~~~~~~~~~~~~F~~~D~d~dG~Is~---~El~~~l~~------------------------~~~~~~~~~~~~~~~D~d  481 (504)
T 3q5i_A          429 QILFSEERLRRAFNLFDTDKSGKITK---EELANLFGL------------------------TSISEKTWNDVLGEADQN  481 (504)
T ss_dssp             HHHTCHHHHHHHHHHHCTTCCSEECH---HHHHHHTTC------------------------SCCCHHHHHHHHHTTCSS
T ss_pred             hcccCHHHHHHHHHHhcCCCCCcCcH---HHHHHHHhh------------------------CCCCHHHHHHHHHHhCCC
Confidence            33455788999999999999965555   344444431                        137899999999999999


Q ss_pred             CCCCeeHHhhhccce
Q psy4132         383 PDSPIYLKTYSSGVK  397 (473)
Q Consensus       383 ~dg~Is~~EF~~~~~  397 (473)
                      +||.|+++||...++
T Consensus       482 ~dG~I~~~EF~~~~~  496 (504)
T 3q5i_A          482 KDNMIDFDEFVSMMH  496 (504)
T ss_dssp             CSSSEEHHHHHHHHH
T ss_pred             CCCcEeHHHHHHHHH
Confidence            999999999988765

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=99.50  E-value=5.6e-14  Score=127.27  Aligned_cols=163  Identities=24%  Similarity=0.395  Sum_probs=116.5

Q ss_pred             CceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-c---c-CCHHHHHHHHHhcCCCCCc
Q psy4132         215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-L---Q-QNPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       215 G~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~---~-~~~~~~~l~~~~D~d~dG~  288 (473)
                      ++++-+++..+..      ......+++..+|+.||.+ ++|.|+.+||..+.. +   + ....+..+|..+|.|++|.
T Consensus         6 ~~l~~~~l~~l~~------~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~   79 (190)
T 1g8i_A            6 SKLKPEVVEELTR------KTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR   79 (190)
T ss_dssp             CSCCHHHHHHHHH------TSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSE
T ss_pred             ccCCHHHHHHHHH------ccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCe
Confidence            3466666666544      1223566788889999988 899999999999533 2   2 2345889999999999999


Q ss_pred             ccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCC
Q psy4132         289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLS  368 (473)
Q Consensus       289 I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls  368 (473)
                      |++.||+.++.... .....+.++.+|+.+|.|++|.+...|+   ..++.......+.....+         .+ +..+
T Consensus        80 i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~i~~~e~---~~~l~~~~~~~g~~~~~~---------~~-~~~~  145 (190)
T 1g8i_A           80 IEFSEFIQALSVTS-RGTLDEKLRWAFKLYDLDNDGYITRNEM---LDIVDAIYQMVGNTVELP---------EE-ENTP  145 (190)
T ss_dssp             EEHHHHHHHHHHHH-HCCHHHHHHHHHHHHCTTCSSEEEHHHH---HHHHHHHHHHC-----CC---------GG-GSSH
T ss_pred             EeHHHHHHHHHHhc-CCCHHHHHHHHHHhhcCCCCCeECHHHH---HHHHHHHHHHhCCccCCc---------cc-cccH
Confidence            99999999988763 3466788999999999999977777544   444433211100000000         00 1366


Q ss_pred             HHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         369 PEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       369 ~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .+++..+|+.+|.|+||.|+++||...+.
T Consensus       146 ~~~~~~~f~~~D~d~dG~i~~~ef~~~~~  174 (190)
T 1g8i_A          146 EKRVDRIFAMMDKNADGKLTLQEFQEGSK  174 (190)
T ss_dssp             HHHHHHHHHHHCSSCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence            78899999999999999999999987664

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=99.50  E-value=6.7e-14  Score=124.04  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             HHHHhhCCCCCCCccHHHHhcch-hcc--------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         244 KRFRKLDLDNSGALSIDEFMSLP-ELQ--------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       244 ~~F~~~D~d~~G~Is~~el~~l~-~~~--------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      .+|..+|.|++|.|+.+||..++ .++        ....+..++..+|.+++|.|+|+||+.++...       +.++.+
T Consensus         3 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~   75 (165)
T 1k94_A            3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKEN   75 (165)
T ss_dssp             HHHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHHHHH
Confidence            45778888888888888887743 222        12346778888888888888888888777654       667788


Q ss_pred             hHHhcCCCCchhhHhhH
Q psy4132         315 FRIYDIDNDDDYYQALG  331 (473)
Q Consensus       315 F~~~D~d~dg~~~~~e~  331 (473)
                      |+.||.|++|.+...|+
T Consensus        76 F~~~D~d~~G~i~~~el   92 (165)
T 1k94_A           76 FMTVDQDGSGTVEHHEL   92 (165)
T ss_dssp             HHHHCTTCCSBCCHHHH
T ss_pred             HHHhCCCCCceECHHHH
Confidence            88888888755555433

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=99.50  E-value=7.8e-14  Score=126.31  Aligned_cols=164  Identities=24%  Similarity=0.394  Sum_probs=116.5

Q ss_pred             CCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchh-c----cCCHHHHHHHHHhcCCCCC
Q psy4132         214 DGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPE-L----QQNPLVQRVIDIFDEDRNG  287 (473)
Q Consensus       214 dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~----~~~~~~~~l~~~~D~d~dG  287 (473)
                      .++++-++...+...      .....+++..+|+.||.+ ++|.|+.+||..+.. .    .....+..+|..+|.|++|
T Consensus         5 ~~~l~~~~l~~l~~~------~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G   78 (190)
T 1fpw_A            5 TSKLSKDDLTCLKQS------TYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNG   78 (190)
T ss_dssp             SCCSTTHHHHHHTTT------CCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSS
T ss_pred             cCCCCHHHHHHHHHh------cCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCC
Confidence            344565665555431      223456677788888876 899999999999643 2    2344688999999999999


Q ss_pred             cccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCC
Q psy4132         288 EVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELL  367 (473)
Q Consensus       288 ~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~l  367 (473)
                      .|++.||+.++.... .....+.+..+|+.+|.|++|.+...   |+..++.......+.....          ...+..
T Consensus        79 ~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~i~~~---ef~~~~~~~~~~~g~~~~~----------~~~~~~  144 (190)
T 1fpw_A           79 FIHFEEFITVLSTTS-RGTLEEKLSWAFELYDLNHDGYITFD---EMLTIVASVYKMMGSMVTL----------NEDEAT  144 (190)
T ss_dssp             EECHHHHHHHHHHHS-CCCSTHHHHHHHHHHCSSCSSEEEHH---HHHHHHHHHHTTSCSTTSS----------SCCCCC
T ss_pred             cEeHHHHHHHHHHHc-cCCcHHHHHHHHHHhcCCCCCcCcHH---HHHHHHHHHHHHhccccCc----------ccccch
Confidence            999999999998764 34567889999999999999777764   4444444322111100000          000136


Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +.+++..+|+.+|.|+||.|+++||...+.
T Consensus       145 ~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  174 (190)
T 1fpw_A          145 PEMRVKKIFKLMDKNEDGYITLDEFREGSK  174 (190)
T ss_dssp             HHHHHHHHHHHHTTTCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            677899999999999999999999988765

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.50  E-value=3.2e-14  Score=148.94  Aligned_cols=135  Identities=21%  Similarity=0.300  Sum_probs=109.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-----------CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-----------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-----------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~  302 (473)
                      ...+.++++++|+.+|.|++|.|+.+||..++ ..+.           ...++.+|+.+|.|++|.|+|+||+.++... 
T Consensus       341 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~~~-  419 (494)
T 3lij_A          341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR-  419 (494)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH-
T ss_pred             cHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh-
Confidence            46778899999999999999999999999853 3321           2357899999999999999999999998655 


Q ss_pred             cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC
Q psy4132         303 VKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL  382 (473)
Q Consensus       303 ~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~  382 (473)
                      ......+.+..+|+.||+|++|.++.   +|+..++..                        ..++++++.++|+.+|.|
T Consensus       420 ~~~~~~~~~~~~F~~~D~d~~G~Is~---~El~~~l~~------------------------~~~~~~~~~~~~~~~D~d  472 (494)
T 3lij_A          420 KSLLSKDKLESAFQKFDQDGNGKISV---DELASVFGL------------------------DHLESKTWKEMISGIDSN  472 (494)
T ss_dssp             HHHTCHHHHHHHHHHHCTTCSSEECH---HHHHHHC-C------------------------CSCCCHHHHHHHHTTCSS
T ss_pred             hccccHHHHHHHHHHHCCCCCCcCCH---HHHHHHHHh------------------------cCCCHHHHHHHHHHhCCC
Confidence            33446778999999999999965555   344444431                        137888999999999999


Q ss_pred             CCCCeeHHhhhccce
Q psy4132         383 PDSPIYLKTYSSGVK  397 (473)
Q Consensus       383 ~dg~Is~~EF~~~~~  397 (473)
                      +||.|+++||...++
T Consensus       473 ~dG~I~~~EF~~~~~  487 (494)
T 3lij_A          473 NDGDVDFEEFCKMIQ  487 (494)
T ss_dssp             SSSSEEHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHH
Confidence            999999999988775

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=99.49  E-value=7.3e-14  Score=127.74  Aligned_cols=140  Identities=24%  Similarity=0.410  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHhhCCC-CCCCccHHHHhcch-hccCCH----HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         238 DIRRLGKRFRKLDLD-NSGALSIDEFMSLP-ELQQNP----LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d-~~G~Is~~el~~l~-~~~~~~----~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..++++.+|+.||.+ ++|.|+.+||..++ .++..+    .+..+|..+|.|++|.|+|.||+.++.... .....+.+
T Consensus        12 ~~~el~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~-~~~~~~~~   90 (198)
T 2r2i_A           12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVL-KGKVDQKL   90 (198)
T ss_dssp             HTSCHHHHHHHHHHHCTTSEECHHHHHHHHTCCSCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHS-SCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHc-cCchHHHH
Confidence            345678899999998 89999999999964 344333    378999999999999999999999998763 44567889


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH-HHHHHHHhccCCCCCeeHH
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED-LLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e-i~~~~~~~D~~~dg~Is~~  390 (473)
                      +.+|+.||.|++|.+...   |+..++.......                .....+++++ +..+|+.+|.|+||.|+++
T Consensus        91 ~~~F~~~D~d~~G~I~~~---Ef~~~~~~~~~~~----------------~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~  151 (198)
T 2r2i_A           91 RWYFKLYDVDGNGCIDRG---ELLNIIKAIRAIN----------------RCNEAMTAEEFTNMVFDKIDINGDGELSLE  151 (198)
T ss_dssp             HHHHHHHCTTCSSCEEHH---HHHHHHHHTTGGG----------------GSSSCCCHHHHHHHHHHHHCTTCSSEECHH
T ss_pred             HHHHHHhcCCCCCcCcHH---HHHHHHHHHHhhc----------------CCCchhhHHHHHHHHHHHhCCCCCCcCcHH
Confidence            999999999999766664   4444443221100                0001356555 7889999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...+.
T Consensus       152 Ef~~~~~  158 (198)
T 2r2i_A          152 EFMEGVQ  158 (198)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988765

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=99.49  E-value=7e-14  Score=128.19  Aligned_cols=132  Identities=17%  Similarity=0.309  Sum_probs=96.1

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      ...+....++++|..+|.       ..++...|..++..++..  ++..++.  .+|.|++|.|+|+||+.++...    
T Consensus        51 l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~--~~~~l~~--~~D~d~~g~I~~~EF~~~~~~~----  122 (197)
T 3pm8_A           51 LCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPP--DIHQVLR--DIDSNASGQIHYTDFLAATIDK----  122 (197)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC----CH--HHHHHHH--C-------CEEHHHHHHTTCCH----
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHH--HHHHHHH--HhCCCCCCeEcHHHHHHHHHHH----
Confidence            345556789999999998       788888999998877766  5555554  3799999999999999987621    


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ......+.+..+|+.+|.|++|+|+.+||+.++...      ....++.++..+|.|++|.|+|+||+.+|..
T Consensus       123 ~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~~  195 (197)
T 3pm8_A          123 QTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSK  195 (197)
T ss_dssp             HHHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHC
T ss_pred             HhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHc
Confidence            223346789999999999999999999999964332      2234789999999999999999999998864

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=99.48  E-value=7.2e-14  Score=125.81  Aligned_cols=144  Identities=19%  Similarity=0.332  Sum_probs=100.6

Q ss_pred             HHHHHHHHhhCC-CCCCCccHHHHhcchh-cc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         240 RRLGKRFRKLDL-DNSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       240 ~~l~~~F~~~D~-d~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      +++..+|+.||. |++|.|+.+||..+.. .+    ....+..+|..+|.|++|.|+++||+.++.... .....+.++.
T Consensus        18 ~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~-~~~~~~~~~~   96 (183)
T 1s6c_A           18 RELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILL-RGTVHEKLRW   96 (183)
T ss_dssp             HHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH-HCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHc-CCCHHHHHHH
Confidence            344445555555 7899999999999633 22    233578999999999999999999999998763 3456788999


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhh
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYS  393 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~  393 (473)
                      +|+.+|.|++|.+...|+..++..+.....    ....+.+         .+..+.+++..+|+.+|.|+||.|+++||.
T Consensus        97 ~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g----~~~~~~~---------~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~  163 (183)
T 1s6c_A           97 TFNLYDINKDGYINKEEMMDIVKAIYDMMG----KYTYPVL---------KEDTPRQHVDVFFQKMDKNKDGIVTLDEFL  163 (183)
T ss_dssp             HHHHHCTTCSSCEEHHHHHHHHHHHHHHTC------------------------CHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HHHHhCCCCCCeEcHHHHHHHHHHHHHHhc----cccCcCc---------cHHHHHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            999999999977777544444333311100    0000000         001334789999999999999999999998


Q ss_pred             ccce
Q psy4132         394 SGVK  397 (473)
Q Consensus       394 ~~~~  397 (473)
                      ..+.
T Consensus       164 ~~~~  167 (183)
T 1s6c_A          164 ESXQ  167 (183)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.48  E-value=6.2e-14  Score=146.32  Aligned_cols=135  Identities=22%  Similarity=0.281  Sum_probs=106.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcc----h-hccC----------CHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSL----P-ELQQ----------NPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l----~-~~~~----------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ...+.+.++++|+.+|.|++|.|+.+||..+    . ..+.          ...++.+|+.+|.|++|.|+|+||+.++.
T Consensus       330 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~  409 (484)
T 3nyv_A          330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAM  409 (484)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence            3566789999999999999999999999552    1 1221          23478999999999999999999999887


Q ss_pred             hcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q psy4132         300 QFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLAL  379 (473)
Q Consensus       300 ~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~  379 (473)
                      .. .....++.+..+|+.||+|++|.++.+   |+..++.                    .    ..++++++.++|+.+
T Consensus       410 ~~-~~~~~~~~~~~~F~~~D~d~dG~I~~~---El~~~l~--------------------~----~~~~~~~~~~~~~~~  461 (484)
T 3nyv_A          410 DR-KTLLSRERLERAFRMFDSDNSGKISST---ELATIFG--------------------V----SDVDSETWKSVLSEV  461 (484)
T ss_dssp             HH-HHHHHHHHHHHHHHHHCTTCCSEEEHH---HHHHHHH--------------------H----TTCCHHHHHHHHHHH
T ss_pred             hc-cccCcHHHHHHHHHHHCCCCCCcCCHH---HHHHHHH--------------------h----cCCCHHHHHHHHHHh
Confidence            65 333456789999999999999666653   4444433                    1    137899999999999


Q ss_pred             ccCCCCCeeHHhhhccce
Q psy4132         380 DKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       380 D~~~dg~Is~~EF~~~~~  397 (473)
                      |.|+||.|+++||...++
T Consensus       462 D~d~dG~i~~~Ef~~~~~  479 (484)
T 3nyv_A          462 DKNNDGEVDFDEFQQMLL  479 (484)
T ss_dssp             CTTCCSEEEHHHHHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHH
Confidence            999999999999987764

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=99.48  E-value=6.5e-14  Score=129.68  Aligned_cols=139  Identities=27%  Similarity=0.440  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhhCCC-CCCCccHHHHhcch-hccCCH----HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         238 DIRRLGKRFRKLDLD-NSGALSIDEFMSLP-ELQQNP----LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d-~~G~Is~~el~~l~-~~~~~~----~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ..++++.+|+.||.+ ++|+|+.+||..++ .++..+    .+..+|..+|.|++|.|+|.||+.++.... .....+.+
T Consensus        17 s~~ei~~~f~~fD~~~~~G~is~~El~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~-~~~~~~~l   95 (211)
T 2ggz_A           17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIM-QEKMEQKL   95 (211)
T ss_dssp             -------CCCSHHHHCTTSEEEHHHHHHHTTCCSCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHS-CSSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhc-cCchHHHH
Confidence            456778899999998 89999999999954 344332    378899999999999999999999998763 34567889


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH-HHHHHHHhccCCCCCeeHH
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED-LLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e-i~~~~~~~D~~~dg~Is~~  390 (473)
                      +.+|+.||.|++|.+...   |+..++.......                 +...+++++ +..+|+.+|.|+||.|+++
T Consensus        96 ~~~F~~~D~d~~G~I~~~---E~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~f~~~D~d~dG~I~~~  155 (211)
T 2ggz_A           96 KWYFKLYDADGNGSIDKN---ELLDMFMAVQALN-----------------GQQTLSPEEFINLVFHKIDINNDGELTLE  155 (211)
T ss_dssp             HHHHHHHCTTCSSSBCHH---HHHHHHHHHTTSS-----------------CCCSCTHHHHHHHHHHHHCTTCSSSBCHH
T ss_pred             HHHHHHhcCCCCCcCcHH---HHHHHHHHHHhhc-----------------CCccccHHHHHHHHHHHhCCCCCCCCcHH
Confidence            999999999999666664   3333333211100                 001355544 7889999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...+.
T Consensus       156 Ef~~~~~  162 (211)
T 2ggz_A          156 EFINGMA  162 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=99.48  E-value=6.9e-14  Score=138.40  Aligned_cols=182  Identities=11%  Similarity=0.079  Sum_probs=129.2

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ....+...+..+|..+|.|++|+|+..||..++ .++   ....+..++..+|.+++|.|+|.+|+.++.       ...
T Consensus       116 Ls~~e~~~l~~~F~~~D~d~dG~Is~~El~~~L~~lg~~~~~~~i~~l~~~~D~d~~G~I~f~ef~~l~~-------~~~  188 (323)
T 1ij5_A          116 LSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVAN-------DLA  188 (323)
T ss_dssp             CCHHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHH-------HHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCcHHHHHhhhh-------HHH
Confidence            456678889999999999999999999999853 232   234688999999999999999999987542       235


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHH-----------H-HHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELI-----------A-ALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCL  377 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~-----------~-~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~  377 (473)
                      .+..+|..||.|++|.++..++..++           . ++.....+.+|.|++.++...+....        .+..+|+
T Consensus       189 ~l~~~F~~~D~d~dG~Is~~El~~~l~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~--------~l~~~F~  260 (323)
T 1ij5_A          189 ALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL--------VLRILYA  260 (323)
T ss_dssp             TSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCcHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHH--------HHHHHHH
Confidence            67778999999999877776665443           2 22223344567777777766665543        5677888


Q ss_pred             HhccCCCCCeeHHhhhccc-eeeeecccCcHHHHHHHHHHHh--hCCCCCHHHHHHhh
Q psy4132         378 ALDKLPDSPIYLKTYSSGV-KVLQLKSCEDASFVEKTYEIVS--QNVFVTVEQFSRLA  432 (473)
Q Consensus       378 ~~D~~~dg~Is~~EF~~~~-~vl~~~~~~~~~~~~~~~~~~~--~~~~ls~~e~a~~~  432 (473)
                      .+|.|++|.|+.+||...+ ..+.... ++ ..+..++..++  ..|.||..||...+
T Consensus       261 ~~D~d~dG~Is~~El~~~l~~~~g~~l-s~-~e~~~l~~~~D~d~dG~Is~~EF~~~~  316 (323)
T 1ij5_A          261 FADFDKSGQLSKEEVQKVLEDAHIPES-AR-KKFEHQFSVVDVDDSKSLSYQEFVMLV  316 (323)
T ss_dssp             HTCSSSCSSEEHHHHHHHHHHTTCCGG-GC-STHHHHHHHHTTTTCSEECHHHHHHHH
T ss_pred             HhCCCCCCCccHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence            8888888888888888777 5443221 12 22455665554  34678888887654

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=99.48  E-value=1.6e-14  Score=135.43  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhc-chhc-cCC---HHHHHHHHHh---------cCCCCCcccHHHHHHHH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPEL-QQN---PLVQRVIDIF---------DEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~-l~~~-~~~---~~~~~l~~~~---------D~d~dG~I~~~EF~~~l  298 (473)
                      .....+...++.+|..+|.|++|.|+.+||.. +... +..   ..+..++..+         |.|++|.|+|+||+.++
T Consensus        44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~  123 (226)
T 2lvv_A           44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFR  123 (226)
T ss_dssp             SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHH
Confidence            44567789999999999999999999999998 5332 222   2344555555         99999999999999964


Q ss_pred             hhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy4132         299 SQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLA  378 (473)
Q Consensus       299 ~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~  378 (473)
                      .... .....+.+..+|+.||.|++|.++..|+..++..+..                     .|   ++.+++..+|..
T Consensus       124 ~~~~-~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~---------------------~g---~~~~e~~~~~~~  178 (226)
T 2lvv_A          124 LMLC-YIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLKE---------------------WG---VDITDATTVFNE  178 (226)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHHH---------------------HT---CCCCSCHHHHHH
T ss_pred             HHHH-hccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhh---------------------cC---CCHHHHHHHHHH
Confidence            3331 1223568999999999999966666444333332211                     12   333458899999


Q ss_pred             hccCCCCCeeHHhhhccce
Q psy4132         379 LDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       379 ~D~~~dg~Is~~EF~~~~~  397 (473)
                      +|.|+||.|+++||+..++
T Consensus       179 ~D~d~dG~Is~~EF~~~~~  197 (226)
T 2lvv_A          179 IDTNGSGVVTFDEFSCWAV  197 (226)
T ss_dssp             HCCSCSSCEEHHHHHHHHH
T ss_pred             hCCCCCCcEeHHHHHHHHH
Confidence            9999999999999988775

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=126.38  Aligned_cols=132  Identities=17%  Similarity=0.345  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      ......++++|..+|+       ..++...|+.++..++..  ++...+.  .+|.|++|.|+|+||+.++..    ...
T Consensus        33 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~--~~D~d~dg~i~~~ef~~~~~~----~~~  104 (204)
T 3e3r_A           33 ASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQA--EAEGVCR--KWDRNGSGTLDLEEFLRALRP----PMS  104 (204)
T ss_dssp             -------CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHH--HHHHHHH--HHCTTCSSSBCHHHHHHHTSC----CCC
T ss_pred             chhHHHHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHH--HHHHHHH--HhccCCCCcCcHHHHHHHHHh----hcC
Confidence            3445679999999998       788888888888888776  5555554  379999999999999999873    223


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--------cC---CHHHHHHHHHhcC-CCCCcccHHHHHHHHhhcc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--------QQ---NPLVQRVIDIFDE-DRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--------~~---~~~~~~l~~~~D~-d~dG~I~~~EF~~~l~~~~  302 (473)
                      ......+..+|+.+|.|++|+|+.+||..+...        +.   ...++.++..+|. |++|.|+|+||+.++..+.
T Consensus       105 ~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~  183 (204)
T 3e3r_A          105 QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVS  183 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcC
Confidence            356678999999999999999999999996432        11   1247889999998 9999999999999998763

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=99.46  E-value=1.1e-13  Score=119.89  Aligned_cols=129  Identities=12%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhhCCCC-CCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDN-SGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~-~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      .+...++.+|..+|.|+ +|.|+.+||..+ ..++..   ..+..++..+|.+    |+|+||+.++..........+.+
T Consensus        11 ~~~~~l~~~F~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~----i~~~eF~~~~~~~~~~~~~~~~l   86 (146)
T 2qac_A           11 EEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDN----LTYEQYLEYLSICVHDKDNVEEL   86 (146)
T ss_dssp             HHHSCHHHHHHHHHHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSE----ECHHHHHHHHHHTCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCcchHHHH
Confidence            45567899999999999 999999999985 333332   3578899999987    99999999998776666778899


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.||.|++|.++..   ++..++.                    .. | ..++++++..++..+  |+||.|+++|
T Consensus        87 ~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~~~~~~--d~dg~i~~~e  139 (146)
T 2qac_A           87 IKMFAHFDNNCTGYLTKS---QMKNILT--------------------TW-G-DALTDQEAIDALNAF--SSEDNIDYKL  139 (146)
T ss_dssp             HHHHHTTCTTCSSEEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHHHH--CSSSEEEHHH
T ss_pred             HHHHHHhCCCCCCCCCHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHc--CCCCcCcHHH
Confidence            999999999999655553   3333333                    21 2 148899999999999  8999999999


Q ss_pred             hhccc
Q psy4132         392 YSSGV  396 (473)
Q Consensus       392 F~~~~  396 (473)
                      |...+
T Consensus       140 F~~~l  144 (146)
T 2qac_A          140 FCEDI  144 (146)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A

Probab=99.46  E-value=1.3e-13  Score=127.21  Aligned_cols=141  Identities=20%  Similarity=0.146  Sum_probs=119.2

Q ss_pred             chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhh-ccceeeeec
Q psy4132         324 DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYS-SGVKVLQLK  402 (473)
Q Consensus       324 g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~-~~~~vl~~~  402 (473)
                      |-|..++..++.+++......+||+|++.|+++.++++   +.+|++|+..+++.+..- +|   |+-|. .+.++++..
T Consensus        89 gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~---~~IS~dDi~rAik~L~~L-~g---f~v~~v~g~~~vqsv  161 (233)
T 1u5t_A           89 NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK---LNVGLDDLEKSIDMLKSL-EC---FEIFQIRGKKFLRSV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT---TTCCHHHHHHHHHHHTTT-CC---CCEEEETTEEEECCS
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh---cCCCHHHHHHHHHHhhhc-cC---eEEEEECCEEEEEeC
Confidence            45666667889999999889999999999999999998   479999999999999876 43   33333 467777777


Q ss_pred             ccCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc--ccccccccccCcc
Q psy4132         403 SCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI--EGLRFYENKFLLE  471 (473)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~--~g~~~~~n~~~~~  471 (473)
                      +......-..++++++..+++|..+++..++|+...|++.|+.++..|.+|||++.  ++.+||||.|++.
T Consensus       162 p~el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Yw~P~lf~~~  232 (233)
T 1u5t_A          162 PNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWITRQ  232 (233)
T ss_dssp             SSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEECGGGGGCC
T ss_pred             CCccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCCccceechhhhhcc
Confidence            66555556777788888899999999999999999999999999999999999977  6788899999854

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.46  E-value=5.5e-14  Score=146.86  Aligned_cols=137  Identities=19%  Similarity=0.288  Sum_probs=96.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-----hccC-------------CHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-----ELQQ-------------NPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-----~~~~-------------~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ...+.++++++|+.+|.|++|.|+.+||..+.     ..+.             ...++.+|..+|.|++|.|+|+||+.
T Consensus       326 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~~  405 (486)
T 3mwu_A          326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIA  405 (486)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            45677899999999999999999999996531     1121             23478999999999999999999999


Q ss_pred             HHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHH
Q psy4132         297 GVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSC  376 (473)
Q Consensus       297 ~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~  376 (473)
                      ++... ......+.+..+|+.||+|++|.++.+|+..++..+                        | ..++++++.++|
T Consensus       406 ~~~~~-~~~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~------------------------g-~~~~~~~~~~~~  459 (486)
T 3mwu_A          406 SAIDR-TILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA------------------------D-SSIQMEELESII  459 (486)
T ss_dssp             HHSCT-TTTCCHHHHHHHHHHHCSSCSSSBCSSCC---------------------------------------------
T ss_pred             HHHhh-hccchHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHc------------------------C-CCCCHHHHHHHH
Confidence            88655 334567889999999999999666665443333222                        1 137788899999


Q ss_pred             HHhccCCCCCeeHHhhhccce
Q psy4132         377 LALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       377 ~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +.+|.|+||.|+++||...+.
T Consensus       460 ~~~D~d~dG~I~~~EF~~~~~  480 (486)
T 3mwu_A          460 EQVDNNKDGEVDFNEFVEMLQ  480 (486)
T ss_dssp             CCCCSSCSSSBCHHHHHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHH
Confidence            999999999999999987664

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=99.46  E-value=2.1e-13  Score=118.38  Aligned_cols=133  Identities=20%  Similarity=0.384  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc-c
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK-K  234 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~-~  234 (473)
                      .+....++++|..+|.       ..++...|..++..++..  ++...+..  +|.+++|.|+|+||+.++....... .
T Consensus         7 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~--~~~~l~~~--~d~~~~g~i~~~eF~~~~~~~~~~~~~   82 (153)
T 3ox6_A            7 PEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEM--ELIELSQQ--INMNLGGHVDFDDFVELMGPKLLAETA   82 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHH--HHHHHHHH--HHTTSTTCCCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCccCcHHHHHHHHHHHhhcccc
Confidence            3445679999999998       688888899998888776  55555543  7899999999999999886322111 1


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh--cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE--LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~--~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .......+..+|+.+|.+++|+|+.+||+.+..  .+   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        83 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  152 (153)
T 3ox6_A           83 DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS  152 (153)
T ss_dssp             HHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred             ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            122367899999999999999999999999643  33   234588999999999999999999998764

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=99.46  E-value=1.5e-13  Score=128.68  Aligned_cols=163  Identities=17%  Similarity=0.250  Sum_probs=107.7

Q ss_pred             CceeHHHHHHHHccccccccchHHHHHHHHHHHhhCC-CCCCCccHHHHhcchh-cc----CCHHHHHHHHHhcCCCCCc
Q psy4132         215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDL-DNSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       215 G~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~-d~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D~d~dG~  288 (473)
                      +.++-+++..++...      ....+++..+|+.||. +++|.|+.+||..++. ++    ....+..+|+.+|.|++|.
T Consensus        32 ~~l~~~~l~~l~~~~------~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~  105 (224)
T 1s1e_A           32 VCHRPEGLEQLEAQT------NFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS  105 (224)
T ss_dssp             ------CHHHHHHHS------SCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSC
T ss_pred             cCCCHHHHHHHHHHc------CCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCc
Confidence            446656655554411      1234455556666665 4899999999999643 22    2235789999999999999


Q ss_pred             ccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCC
Q psy4132         289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLS  368 (473)
Q Consensus       289 I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls  368 (473)
                      |+|+||+.++.... ....++.++.+|+.||.|++|.+...|   +..++.......+.. ..+.       .  .+..+
T Consensus       106 I~~~Ef~~~l~~~~-~~~~~~~l~~~F~~~D~d~dG~Is~~E---~~~~l~~~~~~~g~~-~~~~-------~--~~~~~  171 (224)
T 1s1e_A          106 VKFEDFVTALSILL-RGTVHEKLRWTFNLYDINKDGYINKEE---MMDIVKAIYDMMGKY-TYPV-------L--KEDTP  171 (224)
T ss_dssp             BCHHHHHHHHHHHH-HCCHHHHHHHHHHHHCTTCCSEECHHH---HHHHHHHHHHHHTTC-CCGG-------G--CSSSH
T ss_pred             EeHHHHHHHHHHHc-cCCHHHHHHHHHHHHcCCCCCeECHHH---HHHHHHHHHHHhccc-CCCC-------C--CHhHH
Confidence            99999999998764 345678899999999999997777644   444443321100000 0000       0  01133


Q ss_pred             HHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         369 PEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       369 ~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .+++..+|+.+|.|+||.|+++||...++
T Consensus       172 ~~~~~~~f~~~D~d~dG~Is~~EF~~~~~  200 (224)
T 1s1e_A          172 RQHVDVFFQKMDKNKDGIVTLDEFLESCQ  200 (224)
T ss_dssp             HHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            57789999999999999999999987764

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=99.46  E-value=2e-13  Score=128.20  Aligned_cols=146  Identities=21%  Similarity=0.354  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ..+...+...|..  .+++|.|+.+||+.+... .    ....++.+|+.+|.|++|.|+|+||+.++.... ....++.
T Consensus        63 ~~ei~~l~~~F~~--~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~-~~~~~~~  139 (229)
T 3dd4_A           63 KKELQILYRGFKN--ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILL-RGTVQEK  139 (229)
T ss_dssp             HHHHHHHHHHHHT--TCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHH-HSCHHHH
T ss_pred             HHHHHHHHHHHHh--hCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHc-CCChHHH
Confidence            4455566666655  678899999999996432 1    123478999999999999999999999998774 4556789


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.|++|.++..|+..++..+..   ..+.. ..+.        .+ +.++++++..+|+.+|.|+||.|+++
T Consensus       140 l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~---~~~~~-~~~~--------~~-~~~~~~~~~~~f~~~D~d~dG~Is~~  206 (229)
T 3dd4_A          140 LNWAFNLYDINKDGYITKEEMLDIMKAIYD---MMGKC-TYPV--------LK-EDAPRQHVETFFQKMDKNKDGVVTID  206 (229)
T ss_dssp             HHHHHHHHCTTCSSCCBHHHHHHHHHHHHH---HCC---------------------CCTHHHHHHHHHCSSCSSBCCHH
T ss_pred             HHHHHHHhCCCCCCeECHHHHHHHHHHHHH---Hhccc-cCCC--------cc-hhhHHHHHHHHHHHhcCCCCCcEeHH
Confidence            999999999999977777544444433321   11100 0000        01 13667789999999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||...++
T Consensus       207 EF~~~~~  213 (229)
T 3dd4_A          207 EFIESCQ  213 (229)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=99.45  E-value=2.6e-13  Score=122.62  Aligned_cols=140  Identities=16%  Similarity=0.112  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhccCC-HHHHHHHHHhc---CCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQN-PLVQRVIDIFD---EDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~-~~~~~l~~~~D---~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      +..+++++|..+|  ++|+|+.+||..++..... ..+..++..+|   .+++|.|+|.||..++..+. .....+.++.
T Consensus        26 ~~~~~~~~F~~~D--~dG~I~~~el~~~lg~~~~~~~~~~i~~~~d~~~~~~~~~i~~~ef~~~~~~~~-~~~~~~~l~~  102 (179)
T 3a8r_A           26 GWAAVEKRFNQLQ--VDGVLLRSRFGKCIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLT-DQGFDNRLRT  102 (179)
T ss_dssp             CHHHHHHHHHHHC--BTTBEEGGGHHHHHTCCSCHHHHHHHHHHHHHHHTCCSSEECHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred             hHHHHHHHHhccC--CCCCCcHHHHHHHHCCCCcHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHc-CCCHHHHHHH
Confidence            4678889999999  8999999999986543323 35778888887   56789999999999887653 3567789999


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHH-HHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIA-ALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~-~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      +|+.||+|++|.++..|+..++. .+...        .+...       .   ..+.+++..+++.+|.|+||.|+++||
T Consensus       103 ~F~~~D~d~dG~Is~~El~~~l~~~~g~~--------~~~~~-------~---~~~~~~~~~~~~~~D~d~dG~I~~~EF  164 (179)
T 3a8r_A          103 FFDMVDKNADGRLTAEEVKEIIALSASAN--------KLSKI-------K---ERADEYTALIMEELDPTNLGYIEMEDL  164 (179)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHHHHHHHTT--------HHHHH-------H---HHHHHHHHHHHHHHSTTCCSEECHHHH
T ss_pred             HHHHHCCCCCCcCCHHHHHHHHHHHhccc--------ccccc-------c---cchHHHHHHHHHHhCCCCCCcCcHHHH
Confidence            99999999997777644444333 22100        00000       0   025678899999999999999999999


Q ss_pred             hcccee
Q psy4132         393 SSGVKV  398 (473)
Q Consensus       393 ~~~~~v  398 (473)
                      ...+..
T Consensus       165 ~~~~~~  170 (179)
T 3a8r_A          165 EALLLQ  170 (179)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            987753

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=99.45  E-value=5.1e-13  Score=120.15  Aligned_cols=153  Identities=14%  Similarity=0.094  Sum_probs=101.9

Q ss_pred             ccCCCCCceeHHHHHHHHcccccc--ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCC
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIH--KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRN  286 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~--~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~d  286 (473)
                      -+.|++|.|+.+|+..++..-...  .......+.+..+|..+|.|++|.|+.+||..+....  ..+..+|+.+| |++
T Consensus        13 ~~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~--~~l~~aF~~fD-d~~   89 (174)
T 2i7a_A           13 GLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRL--VHYQHVFQKVQ-TSP   89 (174)
T ss_dssp             CSCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHH--HHHHHHHHHHC-SBT
T ss_pred             ccCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH--HHHHHHHHHhc-CCC
Confidence            467889999999998887631000  0112335677788888888888888888888754321  34667888888 888


Q ss_pred             CcccHHHHHHHHhhcc---cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhC
Q psy4132         287 GEVDFKEFIQGVSQFS---VKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARG  363 (473)
Q Consensus       287 G~I~~~EF~~~l~~~~---~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g  363 (473)
                      |.|+.+|+..++..+.   .....++.+..+++.+| |++|.+..                       .|+...+.+.  
T Consensus        90 G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~-----------------------~EF~~~~~~~--  143 (174)
T 2i7a_A           90 GVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSF-----------------------PSLVCFLMRL--  143 (174)
T ss_dssp             TBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECH-----------------------HHHHHHHHHH--
T ss_pred             CcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcH-----------------------HHHHHHHHHH--
Confidence            8888888888887651   23345667777888887 66644433                       3333333221  


Q ss_pred             CCCCCHHHHHHHHHHhccCCCC-CeeHHhhhccc
Q psy4132         364 LELLSPEDLLNSCLALDKLPDS-PIYLKTYSSGV  396 (473)
Q Consensus       364 ~~~ls~~ei~~~~~~~D~~~dg-~Is~~EF~~~~  396 (473)
                            +.+.++|+.+|++++| .++++||+.++
T Consensus       144 ------~~~~~~F~~~D~d~~GI~~~~~Ef~~~~  171 (174)
T 2i7a_A          144 ------EAMAKTFRNLSKDGKGLYLTEMEWMSLV  171 (174)
T ss_dssp             ------HHHHHHHHHHCSSSSCCCCCHHHHHHHH
T ss_pred             ------HHHHHHHHHhCCCCCCceecHHHHHHHH
Confidence                  3467788888888888 34788887654

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.45  E-value=2.2e-13  Score=148.50  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhhhh------hhhHHHHHHHH--------hhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccc
Q psy4132         166 SSNINNAFKDLNQ------LMSMAKEMVEI--------SKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI  231 (473)
Q Consensus       166 ~~~l~eaF~~lD~------~~e~~~~l~~l--------g~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~  231 (473)
                      ..+++++|..+|.      ..++...|..+        +..++..  +...++..  +|.|++|.|+|+||+.++.    
T Consensus       531 ~~~l~~~F~~~Dd~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~--~~~~l~~~--~D~d~~G~I~f~EF~~l~~----  602 (714)
T 3bow_A          531 GDGFRRLFAQLAGEDAEISAFELQTILRRVLAKREDIKSDGFSIE--TCKIMVDM--LDEDGSGKLGLKEFYILWT----  602 (714)
T ss_dssp             CHHHHHHHHHHHGGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHH--HHHHHHHH--HCCSSCSSBCHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhhhcccccCCCCCHH--HHHHHHHH--hCCCCCCcCcHHHHHHHHH----
Confidence            5679999998885      57777788876        5556655  55555543  7999999999999999987    


Q ss_pred             cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         232 HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       232 ~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                            ..+.++.+|+.+|.|++|+|+.+||+.++ ..+   ....++.++..+| |++|.|+|+||+.++...      
T Consensus       603 ------~~~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~~~D-d~dG~Isf~EF~~~l~~~------  669 (714)
T 3bow_A          603 ------KIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL------  669 (714)
T ss_dssp             ------HHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHHHHS-CTTCEECHHHHHHHHHHH------
T ss_pred             ------HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHHH------
Confidence                  34789999999999999999999999854 222   3346899999999 999999999999999765      


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhc
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIE  340 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~  340 (473)
                       +.+..+|+.+|+|++|.++..+++.+...|..
T Consensus       670 -~~l~~~F~~~D~d~dG~Is~~el~~l~~~~~~  701 (714)
T 3bow_A          670 -EILFKIFKQLDPENTGTIQLDLISWLSFSVLG  701 (714)
T ss_dssp             -HHHHHHHSSSCSSCCSEEEEEHHHHHHHHHHC
T ss_pred             -HHHHHHHHHhCCCCCCcEEHHHHHHHHHHHHH
Confidence             68899999999999987877777777766654

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=99.44  E-value=3.4e-13  Score=119.51  Aligned_cols=130  Identities=24%  Similarity=0.363  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +....++++|..+|.       ..++...|..++..++..  ++...+.  .+|.|++|.|+|+||+.++....   ...
T Consensus        25 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~eF~~~~~~~~---~~~   97 (169)
T 3qrx_A           25 EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKE--EIKKMIS--EIDKDGSGTIDFEEFLTMMTAKM---GER   97 (169)
T ss_dssp             HHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHH--HHHHHHH--HHCSSSSSSEEHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhcCCCCCcCCHHHHHHHHHHHh---ccc
Confidence            445679999999998       788888899998887766  5555554  37999999999999999887211   123


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .....+..+|+.+|.+++|+|+.+||+.+.. .+   ....++.++..+|.|++|.|+|+||+.++..
T Consensus        98 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  165 (169)
T 3qrx_A           98 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK  165 (169)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred             CcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence            3467889999999999999999999999643 32   2345889999999999999999999998864

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=99.44  E-value=5.4e-13  Score=121.55  Aligned_cols=128  Identities=21%  Similarity=0.343  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         162 QKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       162 ~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      ..+....++++|..+|.       ..++...|+.+|..++ .  +....+.  .+|.|++|.|+|+||+.++....    
T Consensus        47 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~-~--~~~~l~~--~~D~d~~g~i~~~EF~~~~~~~~----  117 (191)
T 3k21_A           47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-Y--NFDLLLD--QIDSDGSGKIDYTEFIAAALDRK----  117 (191)
T ss_dssp             CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC-T--THHHHHH--HHCTTCSSSEEHHHHHHHHSCGG----
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCCcH-H--HHHHHHH--HhCCCCCCeEeHHHHHHHHHhhh----
Confidence            34556789999999988       7788888888887776 3  4444444  37889999999999999876321    


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc---cCC------HHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL---QQN------PLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~---~~~------~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                       ....+.+..+|+.+|.|++|+|+.+||+.+...   +..      ..+..++..+|.|++|.|+|+||+.+|.
T Consensus       118 -~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  190 (191)
T 3k21_A          118 -QLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK  190 (191)
T ss_dssp             -GCCHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred             -hccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence             245678889999999999999999999986432   111      2478899999999999999999998774

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=99.43  E-value=3.6e-13  Score=118.15  Aligned_cols=130  Identities=18%  Similarity=0.348  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|.       ..++...++.++..++..  ++...+.  .+|.+++|.|+|+||+.++....   ..
T Consensus        19 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~l~~--~~d~~~~g~i~~~eF~~~~~~~~---~~   91 (161)
T 3fwb_A           19 EEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKR--EILDLID--EYDSEGRHLMKYDDFYIVMGEKI---LK   91 (161)
T ss_dssp             HHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHH--HHHHHHH--HHCTTSSSCEEHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhCcCCCCeEeHHHHHHHHHHHH---hc
Confidence            4455679999999998       688888899998888776  5555554  37999999999999999887321   12


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ......+..+|+.+|.+++|+|+.+||+.+.. .+   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        92 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~  159 (161)
T 3fwb_A           92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICT  159 (161)
T ss_dssp             CCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            23467899999999999999999999999643 33   234588999999999999999999999875

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=99.43  E-value=1.7e-13  Score=115.93  Aligned_cols=126  Identities=22%  Similarity=0.361  Sum_probs=94.8

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcc--cCCCcHHHHHHHh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS--VKGDRESKLKFAF  315 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~--~~~~~~e~l~~~F  315 (473)
                      ++.+|..+|.+++|.|+.+||..+. ..+..   ..+..+++.+|.+++|.|+++||+.++..+.  ......+.++.+|
T Consensus         2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f   81 (134)
T 1jfj_A            2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLY   81 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence            6789999999999999999999854 33322   3478899999999999999999999885321  1122345689999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhcc
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSG  395 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~  395 (473)
                      +.+|.|++|.++.   +++..++..                    . |   . +. +..+|..+|.|+||.|+++||...
T Consensus        82 ~~~D~d~~G~i~~---~e~~~~l~~--------------------~-~---~-~~-~~~~~~~~D~~~dg~i~~~ef~~~  132 (134)
T 1jfj_A           82 KLMDVDGDGKLTK---EEVTSFFKK--------------------H-G---I-EK-VAEQVMKADANGDGYITLEEFLEF  132 (134)
T ss_dssp             HHHCCSSSSEEEH---HHHHHHHTT--------------------T-T---C-HH-HHHHHHHHHCSSSSEEEHHHHHHH
T ss_pred             HHHCCCCCCccCH---HHHHHHHHH--------------------h-C---H-HH-HHHHHHHhCCCCCCcEeHHHHHHH
Confidence            9999999965555   344444432                    1 1   1 11 778899999999999999999865


Q ss_pred             c
Q psy4132         396 V  396 (473)
Q Consensus       396 ~  396 (473)
                      +
T Consensus       133 l  133 (134)
T 1jfj_A          133 S  133 (134)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=99.42  E-value=9e-13  Score=115.71  Aligned_cols=137  Identities=18%  Similarity=0.321  Sum_probs=105.9

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      ...+....++++|..+|.       ..++...+..++..++..  ++...+.  .+|.+++|.|+|+||+.++.......
T Consensus        14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~~~~~~~~~   89 (162)
T 1top_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE--ELDAIIE--EVDEDGSGTIDFEEFLVMMVRQMKED   89 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHH--HHHHHHH--HHCTTSCCEEEHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHH--HHHHHHH--HHcCCCCCcEeHHHHHHHHHHHhccc
Confidence            334556789999999997       788889999998887766  5555554  37899999999999999886321111


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ........+..+|+.+|.+++|+|+.+||+.+. ..+   ....+..++..+|.|++|.|+|+||+.++..+
T Consensus        90 ~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~  161 (162)
T 1top_A           90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV  161 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHSC
T ss_pred             cccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhhc
Confidence            111256788999999999999999999999854 333   23458899999999999999999999988643

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=99.42  E-value=6.4e-13  Score=116.64  Aligned_cols=135  Identities=18%  Similarity=0.317  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         163 KETSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      .+....++++|..+|.        ..++...|..++..++..  ++...+.  .+|.|++|.|+|+||+.++........
T Consensus        14 ~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~--~~D~~~~g~i~~~eF~~~~~~~~~~~~   89 (161)
T 1dtl_A           14 EEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPE--ELQEMID--EVDEDGSGTVDFDEFLVMMVRSMKDDS   89 (161)
T ss_dssp             HHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHH--HHHHHHH--HHCTTSSSSBCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhCCCCCCeEcHHHHHHHHHHHhcccc
Confidence            3445679999999985        567778888888877766  5555554  379999999999999998873221001


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......+..+|+.+|.|++|+|+.+||+.+.. .+   ....++.++..+|.|++|.|+|+||+.++..+
T Consensus        90 ~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~  160 (161)
T 1dtl_A           90 KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGV  160 (161)
T ss_dssp             --CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC-
T ss_pred             cchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHcC
Confidence            234567799999999999999999999999643 32   23358899999999999999999999988643

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=99.41  E-value=2.8e-13  Score=122.94  Aligned_cols=148  Identities=18%  Similarity=0.268  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         163 KETSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      .-+..+++++|..||+        ..++...+..++...... ......+.  .+|.|++|.|++.||..++...    .
T Consensus        21 ~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~-~~~~~~f~--~~D~d~~g~i~~~Ef~~~~~~~----~   93 (193)
T 1bjf_A           21 DFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDAS-KFAEHVFR--TFDANGDGTIDFREFIIALSVT----S   93 (193)
T ss_dssp             SCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCH-HHHHHHHH--HHCSSCSSEEEHHHHHHHHHHH----T
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCcCChH-HHHHHHHH--HhCCCCCCcCcHHHHHHHHHHH----c
Confidence            3445678888888875        345555555554433211 01222333  3788899999999998877621    1


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-----c-----CC------HHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-----Q-----QN------PLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-----~-----~~------~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      .......+..+|+.+|.|++|+|+.+||..+...     +     ..      ..+..+|..+|.|++|.|+++||+.++
T Consensus        94 ~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~  173 (193)
T 1bjf_A           94 RGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA  173 (193)
T ss_dssp             SSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            1234567888999999999999999999885321     2     01      137788999999999999999999888


Q ss_pred             hhcccCCCcHHHHHHHhHHhcCCCCch
Q psy4132         299 SQFSVKGDRESKLKFAFRIYDIDNDDD  325 (473)
Q Consensus       299 ~~~~~~~~~~e~l~~~F~~~D~d~dg~  325 (473)
                      ..       .+.+..+| .+|+|++|.
T Consensus       174 ~~-------~~~~~~~~-~~D~~~dG~  192 (193)
T 1bjf_A          174 KS-------DPSIVRLL-QCDPSSAGQ  192 (193)
T ss_dssp             HH-------CTHHHHTT-CC-------
T ss_pred             hc-------CHHHHHHh-ccCCCCCCC
Confidence            53       35677778 888888853

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=99.41  E-value=4.6e-13  Score=119.98  Aligned_cols=131  Identities=24%  Similarity=0.387  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +....++++|..+|.       ..++...|..++..++..  ++...+.  .+|.|++|.|+|+||+.++....   ...
T Consensus         8 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~EF~~~~~~~~---~~~   80 (179)
T 2f2o_A            8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMIN--EVDADGNGTIDFPEFLTMMARKM---KDT   80 (179)
T ss_dssp             SHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHH--HHHHHHH--HHCTTCSSSBCHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHH--HhccCCCCCCcHHHHHHHHHHHc---cCc
Confidence            345679999999998       678888888988888766  5555554  37999999999999999876211   123


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....+..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.++...
T Consensus        81 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  149 (179)
T 2f2o_A           81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK  149 (179)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHCTTCSSSEEHHHHHHHSCC-
T ss_pred             ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHc
Confidence            455679999999999999999999999954 332   23458899999999999999999999998765

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.41  E-value=2.3e-13  Score=117.03  Aligned_cols=126  Identities=17%  Similarity=0.323  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      ....++++|..+|+       ..++...|+.++..++..  ++..++.  .+|.+++|.|+|+||+.++....   ....
T Consensus         4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~--~~~~l~~--~~d~~~~g~i~~~eF~~~~~~~~---~~~~   76 (142)
T 2bl0_C            4 QVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPA--AFNEMFN--EADATGNGKIQFPEFLSMMGRRM---KQTT   76 (142)
T ss_dssp             HHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCCCCHH--HHHHHHH--HHCTTCSSEEEHHHHHHHHHHHH---TTCC
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHH--HhCcCCCCeeeHHHHHHHHHHHh---cCCC
Confidence            45679999999987       678888888888888766  5555554  37889999999999999887311   1123


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ....+..+|+.+|.+++|+|+.+||+.+.. .+   ....++.++..+| |++|.|+|+||+.++
T Consensus        77 ~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~  140 (142)
T 2bl0_C           77 SEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM  140 (142)
T ss_dssp             CHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred             hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence            567889999999999999999999998643 32   2335789999999 999999999998765

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=99.40  E-value=1.1e-12  Score=118.54  Aligned_cols=131  Identities=21%  Similarity=0.415  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHH-----------hhhhhhhhhhhhcccccccccCCCCCceeHHHHHH
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEI-----------SKNISNKIINRQGEITEDDSNKDRDGKINFQEFCS  224 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~l-----------g~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~  224 (473)
                      ++....++++|..+|.       ..++...|..+           +..++..  ++...+.  .+|.|++|.|+|+||+.
T Consensus        36 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~D~d~~g~i~~~ef~~  111 (191)
T 3khe_A           36 LEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEA--EVDHILQ--SVDFDRNGYIEYSEFVT  111 (191)
T ss_dssp             TTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHH--HHHHHHH--HTCTTCSSSEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHH--HHHHHHH--HhCCCCCCcCCHHHHHH
Confidence            4455678889998887       66777777776           5555554  4444443  37888889999999988


Q ss_pred             HHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         225 IVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ++...    ......+.+..+|+.+|.|++|+|+.+||+.+...  .....++.++..+|.|++|.|+|+||+.++..+
T Consensus       112 ~~~~~----~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  186 (191)
T 3khe_A          112 VCMDK----QLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI  186 (191)
T ss_dssp             HHSCH----HHHCCHHHHHHHHHHHCTTCSSEECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHh----cccchHHHHHHHHHHHCCCCcCcCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            87621    22334567888999999999999999999886541  122347888888999999999999998888655

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=99.40  E-value=8e-13  Score=113.92  Aligned_cols=129  Identities=20%  Similarity=0.312  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|.       ..++...+..++..++..  ++...+..  +|.+++|.|+|+||+.++...   ...
T Consensus         7 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~l~~~--~d~~~~g~i~~~ef~~~~~~~---~~~   79 (147)
T 4ds7_A            7 EEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEA--EVADLMNE--IDVDGNHAIEFSEFLALMSRQ---LKC   79 (147)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHH--HHHHHHHH--HCTTSSSEEEHHHHHHHHHHH---HHT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHH--HHHHHHHH--hccCCCCcCcHHHHHHHHHHh---ccC
Confidence            4455679999999988       678888888888877766  55555543  788999999999999988621   122


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ......+..+|+.+|.+++|+|+.+||+.+.. .+   ....++.++..+| |++|.|+|+||+.++.
T Consensus        80 ~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~  146 (147)
T 4ds7_A           80 NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALLS  146 (147)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHh
Confidence            34557889999999999999999999999643 32   2335788999999 9999999999998764

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=99.40  E-value=1.2e-12  Score=114.50  Aligned_cols=132  Identities=16%  Similarity=0.249  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhhhh---------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         163 KETSSNINNAFKDLNQ---------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~---------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      ++....++++|..+|.         ..++...|+.+|..++..  ++..+   ..+|.+++|.|+|+||+.++...... 
T Consensus         5 ~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~l---~~~D~~~~g~i~~~eF~~~~~~~~~~-   78 (156)
T 1wdc_C            5 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE--DVFAV---GGTHKMGEKSLPFEEFLPAYEGLMDC-   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHH--HHHHT---TCCSSTTSCEECHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCCCHH--HHHHH---HhhCCCCCCeeeHHHHHHHHHHHhhc-
Confidence            3445679999998885         578889999999888876  55555   35899999999999999988732211 


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHH--hcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDI--FDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~--~D~d~dG~I~~~EF~~~l~~~  301 (473)
                       .......+..+|+.+|.+++|+|+.+||+.+. ..+   ....++.++..  +|.|++|.|+|+||+.++...
T Consensus        79 -~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~  151 (156)
T 1wdc_C           79 -EQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAG  151 (156)
T ss_dssp             -CCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHHC
T ss_pred             -cCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhcC
Confidence             13456789999999999999999999999964 333   23358899999  999999999999999998764

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=99.40  E-value=1.8e-13  Score=118.59  Aligned_cols=128  Identities=18%  Similarity=0.306  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccc-cCCCCCceeHHHHHHHHcccccc--ccchH
Q psy4132         168 NINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDS-NKDRDGKINFQEFCSIVGNTDIH--KKMVV  237 (473)
Q Consensus       168 ~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~-D~d~dG~I~f~EF~~~~~~~~~~--~~~~~  237 (473)
                      .++++|..+|.       ..++...|+.+|..++..  ++..++.  .+ |.+++|.|+|+||+.++......  .....
T Consensus         5 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~l~~--~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~   80 (148)
T 1m45_A            5 ANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQ--LVQDIIN--ADSSLRDASSLTLDQITGLIEVNEKELDATTKA   80 (148)
T ss_dssp             CCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHH--HHHHHHH--C--CC--CCEEEHHHHHHHHHHTHHHHHGGGCC
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCCCHH--HHHHHHH--HhhCCCCCCeEcHHHHHHHHHHHHhhccccccc
Confidence            47789999998       788999999999988876  5665554  37 99999999999999988732000  02223


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+..+|+.+|.+++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        81 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1m45_A           81 KTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL  146 (148)
T ss_dssp             CTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            45789999999999999999999999964 333   233588999999999999999999999875

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=99.40  E-value=7.1e-13  Score=122.09  Aligned_cols=134  Identities=10%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhh--hhhhhhhhhhccc-------ccccccCCCCCceeHHHHHHHHcc
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISK--NISNKIINRQGEI-------TEDDSNKDRDGKINFQEFCSIVGN  228 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~--~~~~~~~~~~~~~-------~~~~~D~d~dG~I~f~EF~~~~~~  228 (473)
                      ....++++|..+|+       ..++...|..++.  .++..  ++..++       .  .+|.|++|.|+|+||+.++..
T Consensus        34 ~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~--~~~~l~~~~~~lf~--~~D~d~dg~i~~~EF~~~~~~  109 (208)
T 2hpk_A           34 MLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDE--QVEKMRDAVRVFFL--HKGVEPVNGLLREDWVEANRV  109 (208)
T ss_dssp             --CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHH--HHHHHHHHHHHHHH--HTTCBTTTBEEGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHH--HhCCCCCCeEcHHHHHHHHHH
Confidence            34579999999998       6788888888887  67655  444444       3  489999999999999998751


Q ss_pred             -----c--cccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         229 -----T--DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       229 -----~--~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                           .  ..........+.+..+|+.+|.|++|+|+.+||+.+. ..+ ....++.++..+|.|++|.|+|+||+.++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~  189 (208)
T 2hpk_A          110 FAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFR  189 (208)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTSCTTHHHHHHHHHCTTCCSSBCHHHHHHHHH
T ss_pred             HhhhhhhhhccCChHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence                 0  1111112233338999999999999999999999953 232 344689999999999999999999999987


Q ss_pred             hcc
Q psy4132         300 QFS  302 (473)
Q Consensus       300 ~~~  302 (473)
                      ...
T Consensus       190 ~~~  192 (208)
T 2hpk_A          190 KFW  192 (208)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            663

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=99.39  E-value=1.1e-12  Score=118.84  Aligned_cols=136  Identities=10%  Similarity=0.087  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHhh-hh-------hhhHHHHHHHH----hhhhhhhhhhhhcccc---------cccccCCCCCceeHHHH
Q psy4132         164 ETSSNINNAFKDL-NQ-------LMSMAKEMVEI----SKNISNKIINRQGEIT---------EDDSNKDRDGKINFQEF  222 (473)
Q Consensus       164 ~~~~~l~eaF~~l-D~-------~~e~~~~l~~l----g~~~~~~~~~~~~~~~---------~~~~D~d~dG~I~f~EF  222 (473)
                      .....++++|..+ |+       ..++...+..+    |..++..  +....+.         ...+|.|++|.|+++||
T Consensus         9 ~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef   86 (191)
T 2ccm_A            9 FQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGK--KHNEARATLKLIWDGLRKYADENEDEQVTKEEW   86 (191)
T ss_dssp             HHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSH--HHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             HHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence            3455799999999 88       67777778777    6665544  3333330         02479999999999999


Q ss_pred             HHHHcccc-----ccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHH
Q psy4132         223 CSIVGNTD-----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       223 ~~~~~~~~-----~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~  295 (473)
                      +.++....     ...........+..+|+.+|.|++|+|+.+||..+. ..+. ...++.+|..+|.|++|.|+|+||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~  166 (191)
T 2ccm_A           87 LKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFA  166 (191)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHH
T ss_pred             HHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHH
Confidence            99887321     011123445679999999999999999999999964 3332 3358899999999999999999999


Q ss_pred             HHHhhc
Q psy4132         296 QGVSQF  301 (473)
Q Consensus       296 ~~l~~~  301 (473)
                      .++..+
T Consensus       167 ~~~~~~  172 (191)
T 2ccm_A          167 RLWTEY  172 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=99.39  E-value=5.3e-13  Score=114.83  Aligned_cols=126  Identities=19%  Similarity=0.302  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ++...++++|..+|+       ..++...|+.+|..++..  ++..++..      ++|.|+|+||+.++....   ...
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~~~~~------~~g~i~~~eF~~~~~~~~---~~~   72 (143)
T 3j04_B            4 SQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDE--YLEGMMSE------APGPINFTMFLTMFGEKL---NGT   72 (143)
T ss_dssp             HHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHH--HHHTTTTT------SSSCCCHHHHHHHHHHTT---TSS
T ss_pred             HHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHH--HHHHHHHh------CCCCcCHHHHHHHHHHHh---ccC
Confidence            455679999999998       788889999999888876  55555432      789999999999887321   123


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .....+..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.++..
T Consensus        73 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  140 (143)
T 3j04_B           73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKH  140 (143)
T ss_dssp             CCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHHS
T ss_pred             CcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHhc
Confidence            346789999999999999999999999964 333   2345899999999999999999999998864

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=99.38  E-value=3.8e-13  Score=117.87  Aligned_cols=134  Identities=21%  Similarity=0.283  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHhhh-h-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc-
Q psy4132         163 KETSSNINNAFKDLN-Q-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK-  233 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD-~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~-  233 (473)
                      ++....++++|..+| .       ..++...|+.++..++..  ++...+.  .+|.+++|.|+|+||+.++....... 
T Consensus         9 ~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~l~~--~~D~~~~g~i~~~eF~~~~~~~~~~~~   84 (158)
T 2jnf_A            9 SNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKS--TIRQLID--EFDPFGNGDIDFDSFKIIGARFLGEEV   84 (158)
T ss_dssp             HHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHH--HHHHHHH--HHCTTCCSEECHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHH--HhCCCCCCcCcHHHHHHHHHHHhcccc
Confidence            344567999999999 6       788888899999888766  5555554  37999999999999999886322110 


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ........+..+|+.+|.+++|+|+.+||+.+. ..+   ....+..++..+|.|++|.|+|+||+.++..
T Consensus        85 ~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  155 (158)
T 2jnf_A           85 NPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG  155 (158)
T ss_dssp             CTTTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHTSS
T ss_pred             chhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            001345679999999999999999999999964 333   2345889999999999999999999988753

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=99.38  E-value=2.2e-13  Score=122.89  Aligned_cols=137  Identities=13%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c------cCCH---HHHHH---------HHHhcCCCCCcccHHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L------QQNP---LVQRV---------IDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~------~~~~---~~~~l---------~~~~D~d~dG~I~~~EF~  295 (473)
                      ...+...++.+|+.+|.|++|+|+.+||..+.. +      +..+   .+..+         |..+|.|++|.|+|+|  
T Consensus         9 ~~~~~~~l~~~F~~~D~d~dG~i~~~El~~~l~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~f~~~D~d~dg~I~~~E--   86 (186)
T 2hps_A            9 RAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNAT--   86 (186)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCTTCEEEHHHHHHHHH--
T ss_pred             cHHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCcccHHH--
Confidence            345678899999999999999999999998642 2      2222   35555         4889999999999999  


Q ss_pred             HHHhhcccCCCcHHHHHHHh--HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHH
Q psy4132         296 QGVSQFSVKGDRESKLKFAF--RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLL  373 (473)
Q Consensus       296 ~~l~~~~~~~~~~e~l~~~F--~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~  373 (473)
                      .++..........+.+..+|  +.||.|++|.++..   ++..++.                    .. | ..++++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~f~~~~fD~d~~G~I~~~---E~~~~l~--------------------~~-g-~~~~~~~~~  141 (186)
T 2hps_A           87 DSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLP---EFKAFLQ--------------------AV-G-PDLTDDKAI  141 (186)
T ss_dssp             HHHHHCCTHHHHHTTHHHHHHHHHHCTTCSSEEEHH---HHHHHHH--------------------HH-C-TTCCHHHHH
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHccCCCCCcCCHH---HHHHHHH--------------------Hh-C-CCCCHHHHH
Confidence            55544422222234566666  88899998655553   3333332                    22 2 248899999


Q ss_pred             HHHHHhccCCCCCeeHHhhhcccee
Q psy4132         374 NSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       374 ~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      .+|+.+|.|+||.|+++||...+.-
T Consensus       142 ~~~~~~D~d~dG~i~~~ef~~~~~~  166 (186)
T 2hps_A          142 TCFNTLDFNKNGQISRDEFLVTVND  166 (186)
T ss_dssp             HHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            9999999999999999999987763

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=99.37  E-value=1.4e-12  Score=124.46  Aligned_cols=145  Identities=19%  Similarity=0.326  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhhCCC-CCCCccHHHHhcchh-cc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         239 IRRLGKRFRKLDLD-NSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       239 ~~~l~~~F~~~D~d-~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      .+++..+|+.||.+ ++|.|+.+||..++. ++    ....+..+|..+|.|++|.|+|+||+.++.... .....+.++
T Consensus        90 ~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~-~~~~~~~l~  168 (256)
T 2jul_A           90 KKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILL-RGTVHEKLK  168 (256)
T ss_dssp             HHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHH-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHh-ccChHHHHH
Confidence            34455566666654 799999999999643 22    123588999999999999999999999998763 456788999


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|+.||.|++|.+..+|+..++..+...+...    ..+.         -.+..+.+++..+|+.+|.|+||.|+++||
T Consensus       169 ~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~----~~~~---------~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef  235 (256)
T 2jul_A          169 WAFNLYDINKDGCITKEEMLAIMKSIYDMMGRH----TYPI---------LREDAPLEHVERFFQKMDRNQDGVVTIDEF  235 (256)
T ss_dssp             HHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCC----CSCC---------SCCCCHHHHHHHHHHHSCCSTTCSBCHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCC----CCcc---------cchhhHHHHHHHHHHHHCCCCCCcEeHHHH
Confidence            999999999997777644444333332111100    0000         002356788999999999999999999999


Q ss_pred             hccce
Q psy4132         393 SSGVK  397 (473)
Q Consensus       393 ~~~~~  397 (473)
                      ...+.
T Consensus       236 ~~~~~  240 (256)
T 2jul_A          236 LETCQ  240 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=99.37  E-value=2.1e-12  Score=116.18  Aligned_cols=126  Identities=13%  Similarity=0.262  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhhh-----hhhHHHHHHHHhhh-hhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHH
Q psy4132         167 SNINNAFKDLNQ-----LMSMAKEMVEISKN-ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIR  240 (473)
Q Consensus       167 ~~l~eaF~~lD~-----~~e~~~~l~~lg~~-~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~  240 (473)
                      ..+.++|+.+|.     ..++...++.++.. ++..  ++...+.  .+|.|++|.|+|+||..++....    ......
T Consensus        21 ~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~--~~~~~f~--~~D~d~~g~i~~~Ef~~~~~~~~----~~~~~~   92 (183)
T 1s6c_A           21 QVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDAST--YAHYLFN--AFDTTQTGSVKFEDFVTALSILL----RGTVHE   92 (183)
T ss_dssp             HHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHH--HHHHHHH--HHCTTCSSCEEHHHHHHHHHHHH----HCCHHH
T ss_pred             HHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHH--HHHHHHH--HhCCCCCCcEeHHHHHHHHHHHc----CCCHHH
Confidence            345555555443     56666777777644 3333  3333333  36888888888888888776211    123456


Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcchh-c----cC-----------CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLPE-L----QQ-----------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~~-----------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .+..+|+.+|.|++|+|+.+||..+.. .    +.           ...+..+|+.+|.|++|.|+|+||+.++..
T Consensus        93 ~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~  168 (183)
T 1s6c_A           93 KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE  168 (183)
T ss_dssp             HHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            778888888888888888888887532 1    21           134677888888888888888888877754

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=99.37  E-value=5.5e-12  Score=118.37  Aligned_cols=140  Identities=14%  Similarity=0.229  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhhhh-----hhhHHHHHHHHhh-hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         166 SSNINNAFKDLNQ-----LMSMAKEMVEISK-NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       166 ~~~l~eaF~~lD~-----~~e~~~~l~~lg~-~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ...+.+.|...|.     ..++...+..+.. ..+..  .....+.  .+|.|++|.|+|+||+.++....    .....
T Consensus        66 i~~l~~~F~~~d~~G~Is~~ef~~~l~~~~~~~~~~~--~~~~lf~--~~D~d~~G~I~~~Ef~~~l~~~~----~~~~~  137 (229)
T 3dd4_A           66 LQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTT--YAHFLFN--AFDTDHNGAVSFEDFIKGLSILL----RGTVQ  137 (229)
T ss_dssp             HHHHHHHHHTTCCSCCCCHHHHHHHHHHHSCSSSHHH--HHHHHHH--TTCSSCCSSCCHHHHHHHHHHHH----HSCHH
T ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCCCcHH--HHHHHHH--HcCCCCCCeEeHHHHHHHHHHHc----CCChH
Confidence            3445566655555     5666666666432 22222  2333333  48999999999999999887321    22345


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchhc----------------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPEL----------------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV  303 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~~----------------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~  303 (473)
                      +.++.+|+.+|.|++|+|+.+||..+...                .....++.+|..+|.|++|.|+|+||+.++...  
T Consensus       138 ~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~--  215 (229)
T 3dd4_A          138 EKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKD--  215 (229)
T ss_dssp             HHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHTC--
T ss_pred             HHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHhC--
Confidence            78999999999999999999999985321                123458899999999999999999999999754  


Q ss_pred             CCCcHHHHHHHhHHhcC
Q psy4132         304 KGDRESKLKFAFRIYDI  320 (473)
Q Consensus       304 ~~~~~e~l~~~F~~~D~  320 (473)
                           ..+..+|+.||.
T Consensus       216 -----~~~~~~~~~~D~  227 (229)
T 3dd4_A          216 -----ENIMRSMQLFEN  227 (229)
T ss_dssp             -----HHHHHHHHHHTT
T ss_pred             -----HHHHHHHHhccc
Confidence                 678888888874

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=99.37  E-value=2.1e-12  Score=111.48  Aligned_cols=130  Identities=16%  Similarity=0.293  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccc---cCCCCCceeHHHHHHHHcccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDS---NKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~---D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      +++...++++|..+|+       ..++...|+.++..++..  ++..++..  +   |.++ |.|+|+||+.++.... .
T Consensus         4 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~--~~~~l~~~--~~~~d~~~-g~i~~~eF~~~~~~~~-~   77 (149)
T 2mys_C            4 KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNA--EINKILGN--PSKEEMNA-AAITFEEFLPMLQAAA-N   77 (149)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHHH--hhhccccC-CcCcHHHHHHHHHHHh-c
Confidence            3455679999999998       677888888999888766  55555443  5   8889 9999999999887321 0


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .........+..+|+.+|.+++|+|+.+||+.+. ..+   ....++.++.. |.|++|.|+|+||+.++.
T Consensus        78 ~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~  147 (149)
T 2mys_C           78 NKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM  147 (149)
T ss_pred             cCCcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence            1223456789999999999999999999999964 333   23458899999 999999999999999875

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=99.36  E-value=2.1e-12  Score=109.21  Aligned_cols=111  Identities=15%  Similarity=0.239  Sum_probs=57.7

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh----ccC---CHHHHHHHHHh
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE----LQQ---NPLVQRVIDIF  281 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~----~~~---~~~~~~l~~~~  281 (473)
                      +|.|++|.|+++||..++...    ........+..+|+.+|.+++|.|+.+||..+..    ...   ...+..+|+.+
T Consensus         9 ~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~   84 (134)
T 1jfj_A            9 IDVNGDGAVSYEEVKAFVSKK----RAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLM   84 (134)
T ss_dssp             HCTTCSSEEEHHHHHHHHHTT----CCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHH
T ss_pred             HCCCCCCcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            455566666666666555421    1222344555566666666666666666655431    111   11245556666


Q ss_pred             cCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhH
Q psy4132         282 DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQ  328 (473)
Q Consensus       282 D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~  328 (473)
                      |.+++|.|+++||..++....   ...  +..+|+.+|.|++|.++.
T Consensus        85 D~d~~G~i~~~e~~~~l~~~~---~~~--~~~~~~~~D~~~dg~i~~  126 (134)
T 1jfj_A           85 DVDGDGKLTKEEVTSFFKKHG---IEK--VAEQVMKADANGDGYITL  126 (134)
T ss_dssp             CCSSSSEEEHHHHHHHHTTTT---CHH--HHHHHHHHHCSSSSEEEH
T ss_pred             CCCCCCccCHHHHHHHHHHhC---HHH--HHHHHHHhCCCCCCcEeH
Confidence            666666666666666555331   111  555666666666655554

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=99.36  E-value=1.9e-12  Score=114.28  Aligned_cols=130  Identities=18%  Similarity=0.363  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|.       ..++...+..++..++..  ++...+.  .+|.+++|.|+|.||+.++...    ..
T Consensus        23 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~~~~~----~~   94 (166)
T 2aao_A           23 EEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKES--EILDLMQ--AADVDNSGTIDYKEFIAATLHL----NK   94 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHH--HHHHHHH--HHCTTCCSSBCHHHHHHHHTTC----HH
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHH--HHHHHHH--HhCCCCCCeEcHHHHHHHHHHH----hh
Confidence            4455678888888886       566666677777666655  4444443  3688888888888888877521    11


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ......+..+|+.+|.+++|.|+.+||+.+.. .+ ....++.++..+|.|++|.|+|+||+.++..
T Consensus        95 ~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  161 (166)
T 2aao_A           95 IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMMQK  161 (166)
T ss_dssp             HHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------CCHHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred             cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            23446788888888888888888888888532 22 1234677888888888888888888887753

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=99.35  E-value=3.7e-13  Score=116.98  Aligned_cols=130  Identities=15%  Similarity=0.291  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCC--CCCceeHHHHHHHHcccccccc
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKD--RDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d--~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      +....++++|..+|+       ..++...|+.+|..++..  ++..++..  +|.+  ++|.|+|+||+.++..... ..
T Consensus         7 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~l~~~--~d~~~~~~g~i~~~eF~~~~~~~~~-~~   81 (151)
T 1w7j_B            7 DQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNA--EVLKVLGN--PKSDELKSRRVDFETFLPMLQAVAK-NR   81 (151)
T ss_dssp             ----CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHH--HHHHHTTC--CCHHHHTTCEEEHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCcCcCCCCcCcHHHHHHHHHHHhc-cC
Confidence            344569999999998       788899999999888876  56666553  7888  9999999999998873211 11


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .......+..+|+.+|.+++|+|+.+||+.+. ..+   ....++.++..+| |++|.|+|+||+.++.
T Consensus        82 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~~  149 (151)
T 1w7j_B           82 GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DSNGCINYEAFLKHIL  149 (151)
T ss_dssp             ------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence            22345678889999999999999999999964 333   2335889999999 9999999999998764

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=99.35  E-value=1.8e-12  Score=119.22  Aligned_cols=163  Identities=17%  Similarity=0.125  Sum_probs=121.5

Q ss_pred             hhCCCCCCCccHHHHhcchhc-c-CCHHHHHHHHHhcCC-CCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCc
Q psy4132         248 KLDLDNSGALSIDEFMSLPEL-Q-QNPLVQRVIDIFDED-RNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD  324 (473)
Q Consensus       248 ~~D~d~~G~Is~~el~~l~~~-~-~~~~~~~l~~~~D~d-~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg  324 (473)
                      .++.+++|.|+.+++..+... + ....+..++..+|.+ ++|.|+++||..++..+.......+.+..+|+.+|.|++|
T Consensus         7 ~mg~~~~g~l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G   86 (207)
T 2d8n_A            7 GMGNSKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG   86 (207)
T ss_dssp             -CTTCCTTCCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCS
T ss_pred             hhccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCC
Confidence            367899999999999997543 3 344688999999998 7999999999999988755556778899999999999996


Q ss_pred             hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceee----e
Q psy4132         325 DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVL----Q  400 (473)
Q Consensus       325 ~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl----~  400 (473)
                      .+...   |+..++.                    ....  ..+.+++..+|+.+|.|++|.|+++||...+..+    .
T Consensus        87 ~i~~~---Ef~~~~~--------------------~~~~--~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~~~~~~~g  141 (207)
T 2d8n_A           87 TLDFK---EYVIALH--------------------MTTA--GKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMIT  141 (207)
T ss_dssp             EEEHH---HHHHHHH--------------------HHSC--SSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSC
T ss_pred             eEeHH---HHHHHHH--------------------HHcC--CCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHHHHHhc
Confidence            66553   3333332                    2111  2455678899999999999999999999887654    1


Q ss_pred             -----eccc---CcHHHHHHHHHHHhh--CCCCCHHHHHHhhCCc
Q psy4132         401 -----LKSC---EDASFVEKTYEIVSQ--NVFVTVEQFSRLASVS  435 (473)
Q Consensus       401 -----~~~~---~~~~~~~~~~~~~~~--~~~ls~~e~a~~~~~s  435 (473)
                           ..+.   .....+..+++.++.  +|.|+..||...+.-.
T Consensus       142 ~~~~~~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~  186 (207)
T 2d8n_A          142 PEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLAN  186 (207)
T ss_dssp             HHHHHTSCTTTSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHHHC
T ss_pred             cccCCCcccccccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHhC
Confidence                 1111   123556777777654  5789999999887643

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=99.35  E-value=2.4e-12  Score=113.78  Aligned_cols=130  Identities=20%  Similarity=0.283  Sum_probs=102.3

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhh-hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISK-NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~-~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      ...+....++++|..+|.       ..++...|+.+|. .++..  ++..++..      .+|.|+|+||+.++....  
T Consensus        19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~--~~~~l~~~------~dg~i~~~eF~~~~~~~~--   88 (166)
T 2mys_B           19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNE--ELDAMIKE------ASGPINFTVFLTMFGEKL--   88 (166)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHH--HHHHHHHH------CCCCcCHHHHHHHHHHHh--
Confidence            344556789999999998       6888888999998 88766  55544432      379999999999887321  


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                       ........+..+|+.+|.|++|+|+.+||..++. .+   ....++.++..+|.|++|.|+|+||+.++...
T Consensus        89 -~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~~  160 (166)
T 2mys_B           89 -KGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHG  160 (166)
T ss_pred             -ccCCcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHhc
Confidence             1223557899999999999999999999999643 32   23458899999999999999999999998654

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.35  E-value=2.1e-12  Score=111.14  Aligned_cols=123  Identities=15%  Similarity=0.286  Sum_probs=100.5

Q ss_pred             HHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHH
Q psy4132         169 INNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR  241 (473)
Q Consensus       169 l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~  241 (473)
                      ++++|..+|+       ..++...|+.++..++..  ++..++..     +++|.|+|+||+.++....  .........
T Consensus         7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~~~~-----~~~g~i~~~eF~~~~~~~~--~~~~~~~~~   77 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNA--ELNTIKGQ-----LNAKEFDLATFKTVYRKPI--KTPTEQSKE   77 (145)
T ss_dssp             HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHH--HHHHHHHH-----HTSSEECHHHHHHHHTSCC--CCGGGGHHH
T ss_pred             HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHH--HHHHHHHh-----cCCCeEcHHHHHHHHHHHh--hcCcccHHH
Confidence            9999999998       788999999999888766  55555442     7899999999999987321  033456778


Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.++..
T Consensus        78 l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  140 (145)
T 2bl0_B           78 MLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVT  140 (145)
T ss_dssp             HHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHHh
Confidence            9999999999999999999999964 333   2345889999999999999999999998864

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=99.34  E-value=4.6e-12  Score=114.01  Aligned_cols=127  Identities=17%  Similarity=0.219  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      ++....++++|..+|.       ..++...|+.+|..+  .  ++..++.  .+|.|++|.|+|+||+.++....     
T Consensus        35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~--~--~~~~~~~--~~D~d~~g~i~~~Ef~~~~~~~~-----  103 (180)
T 3mse_B           35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKK--W--DINRILQ--ALDINDRGNITYTEFMAGCYRWK-----  103 (180)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCH--H--HHHHHHH--HHCTTCCSEECHHHHHHHHSCCT-----
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCH--H--HHHHHHH--HhCCCCCCcCcHHHHHHHHHhcc-----
Confidence            4556789999999988       778888888887653  2  3344443  37889999999999998887321     


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-cCCHHHHHHHHHhcCCCC--------CcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-QQNPLVQRVIDIFDEDRN--------GEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-~~~~~~~~l~~~~D~d~d--------G~I~~~EF~~~l~~  300 (473)
                      ....+.+..+|+.+|.|++|+|+.+||+.+.. . .....++.++..+|.|++        |.|+|+||+.+|..
T Consensus       104 ~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~~  178 (180)
T 3mse_B          104 NIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLS  178 (180)
T ss_dssp             TC--CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHHh
Confidence            11236788999999999999999999998644 1 123457889999999888        89999999988753

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=99.33  E-value=1.1e-11  Score=110.20  Aligned_cols=132  Identities=16%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHh----hhhhhhhhh-hh--------cccccccccCCCCCceeHHHHH
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEIS----KNISNKIIN-RQ--------GEITEDDSNKDRDGKINFQEFC  223 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg----~~~~~~~~~-~~--------~~~~~~~~D~d~dG~I~f~EF~  223 (473)
                      +....++++|..+|+       ..++...|+.++    ..++..  + +.        .++.  .+|  ++|.|+|+||+
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~--~~D--~~g~i~~~EF~   76 (174)
T 1q80_A            3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHA--KVLMDSLTGVWDNFLT--AVA--GGKGIDETTFI   76 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHH--HHHHHHHHHHHHHTGG--GTT--TTSCEEHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHHHHH--hcC--CCCeEcHHHHH
Confidence            345679999999998       688888888888    666654  2 21        2333  366  89999999999


Q ss_pred             HHHccccccc-cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         224 SIVGNTDIHK-KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       224 ~~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .++....... ........+..+|+.+|.|++|+|+.+||+.+. ..+ ....++.++..+|.|++|.|+|+||+.++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~  156 (174)
T 1q80_A           77 NSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSD  156 (174)
T ss_dssp             HHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHHH
Confidence            9887422110 012345789999999999999999999999963 223 2345899999999999999999999998865


Q ss_pred             c
Q psy4132         301 F  301 (473)
Q Consensus       301 ~  301 (473)
                      .
T Consensus       157 ~  157 (174)
T 1q80_A          157 F  157 (174)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=99.33  E-value=3e-12  Score=113.96  Aligned_cols=135  Identities=17%  Similarity=0.221  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHH----HHHHHhhhhhhhhhhhh-----------cccccccccCCCCCceeHHH
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAK----EMVEISKNISNKIINRQ-----------GEITEDDSNKDRDGKINFQE  221 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~----~l~~lg~~~~~~~~~~~-----------~~~~~~~~D~d~dG~I~f~E  221 (473)
                      +....++++|..+|.       ..++..    .++.+|..++..  ++.           ..+.  .+|.|++|.|+|+|
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~--~~~~l~~~~~~~~~~lf~--~~D~d~dg~i~~~E   79 (176)
T 1nya_A            4 IASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAA--EVQTLKNAFGGLFDYLAK--EAGVGSDGSLTEEQ   79 (176)
T ss_dssp             HHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSH--HHHHHHHHHHHHHHHHHH--HHTSCTTCCBCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHHHHHH--HhCCCCCCeEcHHH
Confidence            345679999999998       566666    677888887765  333           2332  47999999999999


Q ss_pred             HHHHHccccccccc----hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHH
Q psy4132         222 FCSIVGNTDIHKKM----VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       222 F~~~~~~~~~~~~~----~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~  295 (473)
                      |+.++.........    ......++.+|+.+|.|++|+|+.+||+.+. ..+ ....+..+|..+|.|++|.|+|+||+
T Consensus        80 f~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~  159 (176)
T 1nya_A           80 FIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELL  159 (176)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            99988742211111    1124678999999999999999999999853 333 23458899999999999999999999


Q ss_pred             HHHhhcc
Q psy4132         296 QGVSQFS  302 (473)
Q Consensus       296 ~~l~~~~  302 (473)
                      .++....
T Consensus       160 ~~~~~~~  166 (176)
T 1nya_A          160 TAVRDFH  166 (176)
T ss_dssp             HHHSCCS
T ss_pred             HHHHHHh
Confidence            9997663

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=99.33  E-value=7.7e-12  Score=112.08  Aligned_cols=136  Identities=13%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhh-hh-------hhhHHHHHHHHh----hhhhhhhhhhhcc---------cccccccCCCCCceeHHHH
Q psy4132         164 ETSSNINNAFKDL-NQ-------LMSMAKEMVEIS----KNISNKIINRQGE---------ITEDDSNKDRDGKINFQEF  222 (473)
Q Consensus       164 ~~~~~l~eaF~~l-D~-------~~e~~~~l~~lg----~~~~~~~~~~~~~---------~~~~~~D~d~dG~I~f~EF  222 (473)
                      +....++.+|..+ |+       ..++...+..++    ..++..  +....         .....+|.|++|.|+++||
T Consensus         5 ~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef   82 (185)
T 2sas_A            5 FQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDA--DYKSMQASLEDEWRDLKGRADINKDDVVSWEEY   82 (185)
T ss_dssp             HHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             HHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHH--HHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHH
Confidence            4456799999999 88       678888888888    566544  22221         0123479999999999999


Q ss_pred             HHHHccccc-----cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHH
Q psy4132         223 CSIVGNTDI-----HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       223 ~~~~~~~~~-----~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~  295 (473)
                      +.++.....     ..........+..+|+.+|.|++|+|+.+||..+.. .+ ....+..+|..+|.|++|.|+|+||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~  162 (185)
T 2sas_A           83 LAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYK  162 (185)
T ss_dssp             HHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHH
T ss_pred             HHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence            998863211     111123457899999999999999999999998542 22 24458899999999999999999999


Q ss_pred             HHHhhc
Q psy4132         296 QGVSQF  301 (473)
Q Consensus       296 ~~l~~~  301 (473)
                      .++...
T Consensus       163 ~~~~~~  168 (185)
T 2sas_A          163 ELYYRL  168 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=99.33  E-value=1.7e-11  Score=111.88  Aligned_cols=125  Identities=16%  Similarity=0.294  Sum_probs=96.0

Q ss_pred             ccCC-CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-ccC---CHHHHHHHHHhcC
Q psy4132         209 SNKD-RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQ---NPLVQRVIDIFDE  283 (473)
Q Consensus       209 ~D~d-~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~~---~~~~~~l~~~~D~  283 (473)
                      +|.+ ++|.|+++||..++...   .........+..+|+.+|.|++|.|+..||..++. .+.   ...+..+|..+|.
T Consensus        23 fd~~~~~G~i~~~e~~~~l~~~---~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~~D~   99 (198)
T 2r2i_A           23 FMTECPSGQLTLYEFKQFFGLK---NLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDV   99 (198)
T ss_dssp             HHHHCTTSEECHHHHHHHHTCC---SCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCCHHHHHHHHHHHHCT
T ss_pred             HHHhCCCCcCCHHHHHHHHHHh---CCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHccCchHHHHHHHHHHhcC
Confidence            4545 79999999999998732   12233456799999999999999999999998543 222   2247889999999


Q ss_pred             CCCCcccHHHHHHHHhhcc------cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHh
Q psy4132         284 DRNGEVDFKEFIQGVSQFS------VKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALI  339 (473)
Q Consensus       284 d~dG~I~~~EF~~~l~~~~------~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~  339 (473)
                      |++|.|+++||..++....      .....++.+..+|+.+|.|++|.++.   +|+..++.
T Consensus       100 d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~---~Ef~~~~~  158 (198)
T 2r2i_A          100 DGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSL---EEFMEGVQ  158 (198)
T ss_dssp             TCSSCEEHHHHHHHHHHTTGGGGSSSCCCHHHHHHHHHHHHCTTCSSEECH---HHHHHHHT
T ss_pred             CCCCcCcHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhCCCCCCcCcH---HHHHHHHH
Confidence            9999999999999998764      22344566999999999999977776   45555443

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.32  E-value=5.3e-12  Score=132.44  Aligned_cols=131  Identities=20%  Similarity=0.393  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhh--------hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISK--------NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~--------~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ++...+++++|+.+|+       ..|+...|+.++.        .++..  ++..++.  .+|.|++|.|+|+||+.++.
T Consensus       351 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~--~~D~d~dG~I~~~EF~~~~~  426 (504)
T 3q5i_A          351 LEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEE--EVDNILK--EVDFDKNGYIEYSEFISVCM  426 (504)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHH--HHHHHHH--HHCTTCSSSEEHHHHHHHHS
T ss_pred             HHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHH--HHHHHHH--HhCCCCCCcEeHHHHHHHHH
Confidence            4556778889998888       6677777777743        33333  4444444  37888889999999988876


Q ss_pred             cccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-c-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         228 NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-Q-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       228 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..    ......+.+..+|+.+|.|++|+|+.+||+.++.. + ....++.+|..+|.|+||.|+|+||+.+|...
T Consensus       427 ~~----~~~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  498 (504)
T 3q5i_A          427 DK----QILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI  498 (504)
T ss_dssp             CH----HHHTCHHHHHHHHHHHCTTCCSEECHHHHHHHTTCSCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred             hh----hcccCHHHHHHHHHHhcCCCCCcCcHHHHHHHHhhCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            32    22334567888899999999999999998886432 2 23457888888999999999999998888765

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.32  E-value=3.8e-12  Score=142.16  Aligned_cols=149  Identities=15%  Similarity=0.296  Sum_probs=115.6

Q ss_pred             ceeHHHHHHHHccccc-----------cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHH
Q psy4132         216 KINFQEFCSIVGNTDI-----------HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDI  280 (473)
Q Consensus       216 ~I~f~EF~~~~~~~~~-----------~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~  280 (473)
                      .++|++|...+.....           ..........++.+|+.||.|++|+|+.+||..++ .++   ....++.++..
T Consensus       690 ~i~~~eF~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~  769 (863)
T 1sjj_A          690 RVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSI  769 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHTTTCSSSSSEEESTTHHHHHHHHTCCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            5789999877663211           11224467889999999999999999999999853 333   34568999999


Q ss_pred             hcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHh
Q psy4132         281 FDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINR  360 (473)
Q Consensus       281 ~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~  360 (473)
                      +|.|++|.|+|+||+.++..........+.+..+|+.| .|++|.++.   .++..+                       
T Consensus       770 ~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF~~~-~d~~G~Is~---~El~~~-----------------------  822 (863)
T 1sjj_A          770 VDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKIL-AGDKNYITV---DELRRE-----------------------  822 (863)
T ss_dssp             HCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHHHGG-GTSSSEEEH---HHHHHH-----------------------
T ss_pred             hCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hCCCCcCcH---HHHHHH-----------------------
Confidence            99999999999999999987766666778899999999 788844444   233322                       


Q ss_pred             hhCCCCCCHHHHHHHHHHhccC-----CCCCeeHHhhhccce
Q psy4132         361 ARGLELLSPEDLLNSCLALDKL-----PDSPIYLKTYSSGVK  397 (473)
Q Consensus       361 ~~g~~~ls~~ei~~~~~~~D~~-----~dg~Is~~EF~~~~~  397 (473)
                            ++++++..++..+|.+     +||.|+|+||...+.
T Consensus       823 ------l~~~~~~~l~~~~d~~~~~~~~dg~I~~~eF~~~~~  858 (863)
T 1sjj_A          823 ------LPPDQAEYCIARMAPYNGRDAVPGALDYMSFSTALY  858 (863)
T ss_dssp             ------SCHHHHHHHHHHSEECCSSCCCTTEEESHHHHHHHS
T ss_pred             ------CCHHHHHHHHHHcchhcCCCCCCCceeHHHHHHHHh
Confidence                  2367788999999987     699999999987664

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=99.32  E-value=6.9e-12  Score=117.30  Aligned_cols=115  Identities=13%  Similarity=0.248  Sum_probs=66.5

Q ss_pred             hhhHHHHHHHHhhh-hhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCc
Q psy4132         179 LMSMAKEMVEISKN-ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGAL  257 (473)
Q Consensus       179 ~~e~~~~l~~lg~~-~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I  257 (473)
                      ..++...+..++.. ++..  ++...+.  .+|.|++|.|+|+||+.++....    .....+.++.+|+.+|.|++|+|
T Consensus        71 ~~E~~~~l~~l~~~~~~~~--~~~~~f~--~~D~d~~G~I~~~Ef~~~l~~~~----~~~~~~~l~~~F~~~D~d~dG~I  142 (224)
T 1s1e_A           71 EETFKQIYAQFFPHGDAST--YAHYLFN--AFDTTQTGSVKFEDFVTALSILL----RGTVHEKLRWTFNLYDINKDGYI  142 (224)
T ss_dssp             HHHHHHHHHTTCTTSCCHH--HHHHHHH--HHCTTCSSCBCHHHHHHHHHHHH----HCCHHHHHHHHHHHHCTTCCSEE
T ss_pred             HHHHHHHHHHhcCCCCcHH--HHHHHHH--HhcCCCCCcEeHHHHHHHHHHHc----cCCHHHHHHHHHHHHcCCCCCeE
Confidence            34555555555432 2222  2233332  36777777777777777665211    11234566777777777777777


Q ss_pred             cHHHHhcchh-c----cC-------C----HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         258 SIDEFMSLPE-L----QQ-------N----PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       258 s~~el~~l~~-~----~~-------~----~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.+||..+.. .    +.       .    ..++.+|+.+|.|++|.|+|+||+.++...
T Consensus       143 s~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~  202 (224)
T 1s1e_A          143 NKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQED  202 (224)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            7777776422 1    11       1    346677777777777777777777776543

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=99.31  E-value=2.2e-12  Score=120.78  Aligned_cols=131  Identities=19%  Similarity=0.162  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHH-HHHHHhhhhhhhhhhhhcccccccc---------cCCCCCceeHHHHHHH
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAK-EMVEISKNISNKIINRQGEITEDDS---------NKDRDGKINFQEFCSI  225 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~-~l~~lg~~~~~~~~~~~~~~~~~~~---------D~d~dG~I~f~EF~~~  225 (473)
                      .+....++++|..+|.       ..++.. .++.++..++..  ++..++..  +         |.|++|.|+|+||+.+
T Consensus        47 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~--~~~~~~~~--~f~~~~~~~~D~d~~G~I~~~EF~~~  122 (226)
T 2lvv_A           47 AESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTT--HLPDIVQR--AFDKAKDLGNKVKGVGEEDLVEFLEF  122 (226)
T ss_dssp             HHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSS--SCHHHHHH--HHHHHHHHHHHHSCCCCCSCBCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHH--HHHHHHHH--HHHHhcccCCCCCCCCcCCHHHHHHH
Confidence            4456789999999998       667776 456667766655  44444432  4         8999999999999995


Q ss_pred             HccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c---cC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         226 VGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L---QQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       226 ~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~---~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +..    .........+..+|+.+|.|++|+|+.+||+.++. +   +. ...++.+|..+|.|++|.|+|+||+.++..
T Consensus       123 ~~~----~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~  198 (226)
T 2lvv_A          123 RLM----LCYIYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVT  198 (226)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHH
T ss_pred             HHH----HHhccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            431    11223456899999999999999999999999642 2   22 224889999999999999999999999865


Q ss_pred             c
Q psy4132         301 F  301 (473)
Q Consensus       301 ~  301 (473)
                      .
T Consensus       199 ~  199 (226)
T 2lvv_A          199 K  199 (226)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=99.31  E-value=3.5e-12  Score=104.99  Aligned_cols=101  Identities=18%  Similarity=0.340  Sum_probs=82.6

Q ss_pred             HHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch
Q psy4132         187 VEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP  266 (473)
Q Consensus       187 ~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~  266 (473)
                      +++|.+++..  ++..++..  +|  ++|.|+|+||+.++..      .......++.+|+.+|.|++|+|+.+||+.+.
T Consensus         1 ralG~~~t~~--e~~~~~~~--~d--~~g~i~~~ef~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l   68 (110)
T 1pva_A            1 XAAKDLLKAD--DIKKALDA--VK--AEGSFNHKKFFALVGL------KAMSANDVKKVFKAIDADASGFIEEEELKFVL   68 (110)
T ss_dssp             -CHHHHSCHH--HHHHHHHH--TC--STTCCCHHHHHHHHTC------TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGG
T ss_pred             CcccccCCHH--HHHHHHHh--cC--CCCcCcHHHHHHHHcc------CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            4678888877  77777654  55  8899999999999862      23567889999999999999999999999964


Q ss_pred             h-c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         267 E-L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       267 ~-~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      . .   +   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        69 ~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  108 (110)
T 1pva_A           69 KSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH  108 (110)
T ss_dssp             GGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            3 3   2   223588999999999999999999998875

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=99.31  E-value=4.3e-12  Score=110.41  Aligned_cols=126  Identities=24%  Similarity=0.386  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      ....++++|..+|.       ..++ ..+..++.++     .....+.  .+|.+++|.|+|+||+.++....   ....
T Consensus         4 ~~~~l~~~F~~~D~d~~G~i~~~el-~~l~~~~~~~-----~~~~~~~--~~D~~~~g~i~~~ef~~~~~~~~---~~~~   72 (155)
T 3ll8_B            4 EIKRLGKRFKKLDLDNSGSLSVEEF-MSLPELQQNP-----LVQRVID--IFDTDGNGEVDFKEFIEGVSQFS---VKGD   72 (155)
T ss_dssp             HHHHHHHHHHHHCTTCSSSBCHHHH-TTSGGGTTCT-----THHHHHH--HHCTTCSSSBCHHHHHHHHGGGC---SSCC
T ss_pred             HHHHHHHHHHHhCcCCCCeEcHHHH-HHhhccccch-----HHHHHHH--HHCCCCCCcCcHHHHHHHHHHHc---ccCC
Confidence            44578889998887       3333 3344444332     2222332  36888889999999988877321   1224


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhc--c---CCHHHHHHHHH----hcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--Q---QNPLVQRVIDI----FDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~---~~~~~~~l~~~----~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ....+..+|+.+|.|++|+|+.+||+.+...  +   ....+..++..    +|.|++|.|+|+||+.++...
T Consensus        73 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  145 (155)
T 3ll8_B           73 KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL  145 (155)
T ss_dssp             HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence            5577888899999999999999998885322  2   22345666666    888999999999998888765

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=99.31  E-value=6.3e-12  Score=113.99  Aligned_cols=137  Identities=14%  Similarity=0.132  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHH-----HHHHHHhhhhhhhhh---hhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMA-----KEMVEISKNISNKII---NRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~-----~~l~~lg~~~~~~~~---~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ++....++++|..+|+       ..++.     ..++.+|..++....   ++...+.  .+|.|++|.|+|+||+.++.
T Consensus        16 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~--~~D~d~~g~i~~~EF~~~~~   93 (195)
T 1qv0_A           16 PRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFR--GCGMEYGKEIAFPQFLDGWK   93 (195)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHH--HTTCCTTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH--HcCCCCCceEcHHHHHHHHH
Confidence            4455679999999998       56666     577888887765410   1233333  47999999999999999876


Q ss_pred             cccccc---cchHHHHHH----HHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         228 NTDIHK---KMVVDIRRL----GKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       228 ~~~~~~---~~~~~~~~l----~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ......   ......+.+    ..+|+.+|.|++|+|+.+||+.+. ..+.   ...++.++..+|.|++|.|+|+||+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~  173 (195)
T 1qv0_A           94 QLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTR  173 (195)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHHhhhhhcccccHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            321100   000111223    389999999999999999999964 3332   34589999999999999999999998


Q ss_pred             HHhhc
Q psy4132         297 GVSQF  301 (473)
Q Consensus       297 ~l~~~  301 (473)
                      ++..+
T Consensus       174 ~~~~~  178 (195)
T 1qv0_A          174 QHLGF  178 (195)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=99.31  E-value=7.7e-12  Score=112.93  Aligned_cols=137  Identities=12%  Similarity=0.148  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHH-----HHHHHHhhhhhhhhh---hhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMA-----KEMVEISKNISNKII---NRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~-----~~l~~lg~~~~~~~~---~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ++....++++|..+|+       ..++.     ..|+.+|..++....   .+..++.  .+|.|++|.|+|+||+.++.
T Consensus        12 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~--~~D~d~~g~i~~~EF~~~~~   89 (191)
T 1uhk_A           12 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFG--GAGMKYGVETDWPAYIEGWK   89 (191)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--HTTCCTTCEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH--HhCcCCCCcCcHHHHHHHHH
Confidence            3455679999999998       56776     677888877765410   1233333  47999999999999999876


Q ss_pred             cccccc---cchHHHHHH----HHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         228 NTDIHK---KMVVDIRRL----GKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       228 ~~~~~~---~~~~~~~~l----~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ......   ......+.+    ..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+|.|++|.|+|+||+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~  169 (191)
T 1uhk_A           90 KLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR  169 (191)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHH
T ss_pred             HHhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            321100   000111223    389999999999999999999964 333   234588999999999999999999999


Q ss_pred             HHhhc
Q psy4132         297 GVSQF  301 (473)
Q Consensus       297 ~l~~~  301 (473)
                      ++..+
T Consensus       170 ~~~~~  174 (191)
T 1uhk_A          170 QHLGF  174 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.31  E-value=6.3e-12  Score=131.50  Aligned_cols=132  Identities=22%  Similarity=0.450  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhh--------hhhhhhhhhhcccccccccCCCCCceeHHHHHHHH
Q psy4132         162 QKETSSNINNAFKDLNQ-------LMSMAKEMVEISK--------NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIV  226 (473)
Q Consensus       162 ~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~--------~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~  226 (473)
                      .++...+++++|+.+|.       ..|+...|..++.        .++..  ++..++.  .+|.|++|.|+|+||+.++
T Consensus       341 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~--~~D~d~~G~I~~~EF~~~~  416 (494)
T 3lij_A          341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIES--EVDAILG--AADFDRNGYIDYSEFVTVA  416 (494)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHH--HHHHHHH--HHCTTCSSSEEHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHH--HHHHHHH--HhCCCCCCcCcHHHHHHHH
Confidence            35566788999998888       6677777777764        23333  4444444  3788899999999998887


Q ss_pred             ccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         227 GNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...    ......+.+..+|+.||.|++|+|+.+||+.++..  .....++.+++.+|.|+||.|+|+||+.+|..+
T Consensus       417 ~~~----~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  489 (494)
T 3lij_A          417 MDR----KSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL  489 (494)
T ss_dssp             SCH----HHHTCHHHHHHHHHHHCTTCSSEECHHHHHHHC-CCSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHH
T ss_pred             Hhh----hccccHHHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence            632    22334567888999999999999999999886432  334568889999999999999999999888765

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=99.31  E-value=3.6e-12  Score=104.77  Aligned_cols=99  Identities=22%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-
Q psy4132         189 ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-  267 (473)
Q Consensus       189 lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-  267 (473)
                      ++..++..  ++..++..  +|  ++|.|+|+||+.++..      .....+.++.+|+.+|.|++|+|+.+||+.+.. 
T Consensus         3 l~~~~~~~--ei~~~~~~--~D--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~   70 (109)
T 3fs7_A            3 ITDILSAK--DIESALSS--CQ--AADSFNYKSFFSTVGL------SSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKN   70 (109)
T ss_dssp             GGGTSCHH--HHHHHHHH--TC--STTCCCHHHHHHHHTC------TTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGG
T ss_pred             ccCcCCHH--HHHHHHHh--cC--CCCcCcHHHHHHHHhc------CCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHH
Confidence            56666666  66666553  55  7999999999999873      234678899999999999999999999999643 


Q ss_pred             c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         268 L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       268 ~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .   +   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~  108 (109)
T 3fs7_A           71 FSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK  108 (109)
T ss_dssp             TCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred             HhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            3   2   223588999999999999999999998874

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=99.31  E-value=1.9e-11  Score=110.45  Aligned_cols=161  Identities=19%  Similarity=0.184  Sum_probs=119.6

Q ss_pred             CCCCCccHHHHhcchhc--cCCHHHHHHHHHhcCC-CCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhH
Q psy4132         252 DNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDED-RNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQ  328 (473)
Q Consensus       252 d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D~d-~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~  328 (473)
                      +.+|.++.+++..+...  .....+..+|..+|.+ ++|.|+++||..++..+.....+.+.+..+|+.+|.|++|.+..
T Consensus         3 ~~~~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~   82 (190)
T 2l2e_A            3 KSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF   82 (190)
T ss_dssp             CSSCCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEH
T ss_pred             cccccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeH
Confidence            45788999998886432  2455689999999999 89999999999999887555567788999999999999965555


Q ss_pred             hhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceee---------
Q psy4132         329 ALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVL---------  399 (473)
Q Consensus       329 ~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl---------  399 (473)
                         .|+...+..                    ...  ..+.+++..+|+.+|.|++|.|+++||...+..+         
T Consensus        83 ---~ef~~~~~~--------------------~~~--~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~  137 (190)
T 2l2e_A           83 ---KEFICALSV--------------------TSR--GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVK  137 (190)
T ss_dssp             ---HHHHHHHTT--------------------SSC--SCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSC
T ss_pred             ---HHHHHHHHH--------------------HcC--CCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccC
Confidence               344433332                    111  3567889999999999999999999999877642         


Q ss_pred             -eecccCcHHHHHHHHHHHhh--CCCCCHHHHHHhhCCcHH
Q psy4132         400 -QLKSCEDASFVEKTYEIVSQ--NVFVTVEQFSRLASVSLV  437 (473)
Q Consensus       400 -~~~~~~~~~~~~~~~~~~~~--~~~ls~~e~a~~~~~s~~  437 (473)
                       ..........+..+++.++.  +|.||..||.+.+.-...
T Consensus       138 ~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~  178 (190)
T 2l2e_A          138 LPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPT  178 (190)
T ss_dssp             CCSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHHTCTH
T ss_pred             cccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhCcH
Confidence             11112235566777777654  578999999988755443

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=99.30  E-value=5.9e-12  Score=113.79  Aligned_cols=59  Identities=17%  Similarity=0.317  Sum_probs=26.4

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +..+|+.+|.+++|.|+..||..+.. .+   ....+..+|+.+|.|++|.|+++||..++..
T Consensus        65 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~  127 (190)
T 1g8i_A           65 ATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA  127 (190)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEeHHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHHHHHHHH
Confidence            44455555555555555555544211 11   0112344455555555555555555544443

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=99.30  E-value=3.9e-12  Score=109.01  Aligned_cols=123  Identities=16%  Similarity=0.263  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ..++++|..+|.       ..++...|+.+|..++..  ++..++.      +++|.|+|+||+.++..... .......
T Consensus         5 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~~~~------~~~g~i~~~eF~~~~~~~~~-~~~~~~~   75 (140)
T 1ggw_A            5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLA--EITEIES------TLPAEVDMEQFLQVLNRPNG-FDMPGDP   75 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCHH--HHHHHHT------TSCSSEEHHHHHHHHCTTSS-SSSSCCH
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHH--HHHHHHh------CCCCcCcHHHHHHHHHHHhc-ccCcccH
Confidence            358899999998       788888999999888766  4544432      78999999999999874221 1222345


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ..+..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+|. ++|.|+|+||+.++.
T Consensus        76 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~i~~~eF~~~~~  138 (140)
T 1ggw_A           76 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFVQMIL  138 (140)
T ss_dssp             HHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCCSTTTHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCcEeHHHHHHHHh
Confidence            789999999999999999999999953 333   23458899999999 999999999998874

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=99.30  E-value=6.8e-12  Score=109.71  Aligned_cols=128  Identities=13%  Similarity=0.215  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         162 QKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       162 ~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      ..+....++++|..+|+       ..++...|+.+|..++..  ++..++.      +++|.|+|+||+.++....   .
T Consensus        13 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~--~~~~~~~------~~~g~i~~~eF~~~~~~~~---~   81 (156)
T 1wdc_B           13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDK--ELTAMLK------EAPGPLNFTMFLSIFSDKL---S   81 (156)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHH--HHHHHHT------TSSSCCCHHHHHHHHHHHT---C
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHH------hCCCcCcHHHHHHHHHHHh---c
Confidence            34456679999999998       688889999999888766  5554443      4689999999999887321   1


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......+..+|+.+|.+++|+|+.+||+.+. ..+   ....++.++..+|.| +|.|+|+||+.++...
T Consensus        82 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~~~  151 (156)
T 1wdc_B           82 GTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKGS  151 (156)
T ss_dssp             SCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHHTS
T ss_pred             CCChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHhcC
Confidence            12345789999999999999999999999964 333   233589999999999 9999999999998654

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=99.29  E-value=6.2e-12  Score=115.14  Aligned_cols=131  Identities=19%  Similarity=0.330  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc---
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH---  232 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~---  232 (473)
                      .+....++++|..+|.       ..++... ..++..++     +..++.  .+|.|++|.|+|+||+.++......   
T Consensus        25 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~~~-----~~~l~~--~~D~d~dg~i~~~EF~~~~~~~~~~~~~   96 (202)
T 2bec_A           25 QASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPL-----GDRIIE--SFFPDGSQRVDFPGFVRVLAHFRPVEDE   96 (202)
T ss_dssp             HHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHSTT-----HHHHHH--TTSCSSCCCCCHHHHHHHHGGGSCCCHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCCcc-----HHHHHH--HhCCCCCCcCcHHHHHHHHHHhcccchh
Confidence            4456679999999997       4555555 66766554     223333  4899999999999999998743210   


Q ss_pred             ----------ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hc-c---CCHHHHHHHHH----hcCCCCCcccHHH
Q psy4132         233 ----------KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-EL-Q---QNPLVQRVIDI----FDEDRNGEVDFKE  293 (473)
Q Consensus       233 ----------~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~-~---~~~~~~~l~~~----~D~d~dG~I~~~E  293 (473)
                                .........++.+|+.+|.|++|+|+.+||+.+. .. +   ....++.++..    +|.|++|.|+|+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~E  176 (202)
T 2bec_A           97 DTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE  176 (202)
T ss_dssp             HHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHH
Confidence                      0034567789999999999999999999999964 33 3   22346666766    9999999999999


Q ss_pred             HHHHHhhc
Q psy4132         294 FIQGVSQF  301 (473)
Q Consensus       294 F~~~l~~~  301 (473)
                      |+.++...
T Consensus       177 F~~~~~~~  184 (202)
T 2bec_A          177 FTKSLEKM  184 (202)
T ss_dssp             HHHTTTTS
T ss_pred             HHHHHHHh
Confidence            99988643

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.29  E-value=3e-12  Score=139.55  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=75.4

Q ss_pred             hHH-HHHHHHHHHhhCCCCCCCccHHHHhcchhc---------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcc
Q psy4132         236 VVD-IRRLGKRFRKLDLDNSGALSIDEFMSLPEL---------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       236 ~~~-~~~l~~~F~~~D~d~~G~Is~~el~~l~~~---------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~  302 (473)
                      ..+ .++++.+|+.+| +++|.|+.+||+.++..         +   ....++.++..+|.|++|.|+|+||+.++... 
T Consensus       527 ~~e~~~~l~~~F~~~D-d~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~-  604 (714)
T 3bow_A          527 EEDIGDGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI-  604 (714)
T ss_dssp             GGGCCHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHH-
T ss_pred             hhhHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH-
Confidence            444 788999999999 99999999999996432         1   12357899999999999999999999999875 


Q ss_pred             cCCCcHHHHHHHhHHhcCCCCchhhHhhHHHH
Q psy4132         303 VKGDRESKLKFAFRIYDIDNDDDYYQALGNEL  334 (473)
Q Consensus       303 ~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el  334 (473)
                            +.++.+|+.||.|++|.+...|+..+
T Consensus       605 ------~~l~~~F~~~D~d~dG~Is~~El~~~  630 (714)
T 3bow_A          605 ------QKYQKIYREIDVDRSGTMNSYEMRKA  630 (714)
T ss_dssp             ------HHHHHHHHHHCTTCCSSEEHHHHHHH
T ss_pred             ------HHHHHHHHHhCCCCCCeECHHHHHHH
Confidence                  78999999999999977777555433

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.29  E-value=9.6e-13  Score=119.64  Aligned_cols=126  Identities=17%  Similarity=0.377  Sum_probs=83.4

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ..++++|..+|.       ..++...|..++..++..  ++..++.  .+|.|++|.|+|+||+.++....    .....
T Consensus        10 ~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~--~~~~l~~--~~D~d~dG~I~~~EF~~~~~~~~----~~~~~   81 (188)
T 1s6i_A           10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES--EIKDLMD--AADIDKSGTIDYGEFIAATVHLN----KLERE   81 (188)
T ss_dssp             CSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHH--HHHHHHH--HTCTTCSSEECHHHHHHHHTTSS----SSCCC
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCCCHH--HHHHHHH--HcCCCCCCeEeHHHHHHHHHHHh----ccCHH
Confidence            357778887776       566666777777666654  4444443  36777888888888877765211    11123


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ..+..+|+.+|.|++|+|+.+||+.++ ..+ ....++.++..+|.|++|.|+|+||+.++..
T Consensus        82 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  144 (188)
T 1s6i_A           82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRK  144 (188)
T ss_dssp             CSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTTSC
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence            456777888888888888888887753 222 2335677888888888888888888777654

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=99.29  E-value=4.8e-12  Score=103.82  Aligned_cols=99  Identities=17%  Similarity=0.295  Sum_probs=79.5

Q ss_pred             HHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh
Q psy4132         188 EISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE  267 (473)
Q Consensus       188 ~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~  267 (473)
                      +||. ++..  ++..++..  +|  ++|.|+|+||+.++..      .......++.+|+.+|.|++|+|+.+||+.+..
T Consensus         2 slG~-~~~~--e~~~l~~~--~d--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~   68 (108)
T 2pvb_A            2 SFAG-LKDA--DVAAALAA--CS--AADSFKHKEFFAKVGL------ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQ   68 (108)
T ss_dssp             CCTT-SCHH--HHHHHHHH--TC--STTCCCHHHHHHHHTG------GGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGG
T ss_pred             CcCC-CCHH--HHHHHHHH--hC--CCCcCcHHHHHHHHhC------ChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence            4666 6666  66666653  55  7899999999999862      234678899999999999999999999999643


Q ss_pred             -c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         268 -L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       268 -~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                       .   +   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        69 ~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 2pvb_A           69 NFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK  107 (108)
T ss_dssp             GTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence             3   2   223588999999999999999999998774

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=99.29  E-value=4.3e-12  Score=116.45  Aligned_cols=127  Identities=16%  Similarity=0.333  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         165 TSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       165 ~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +..+++++|..+|+        ..++...++.++..++..  .+...+.  .+|.|++|.|+|+||+.++....    ..
T Consensus        20 ~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~--~~~~~f~--~~D~d~~G~i~~~Ef~~~~~~~~----~~   91 (204)
T 1jba_A           20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQ--YVEAMFR--AFDTNGDNTIDFLEYVAALNLVL----RG   91 (204)
T ss_dssp             HHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHH--HHHHHHH--HHCCSSSSEECHHHHHHHHHHHS----SC
T ss_pred             CHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcCCCcHH--HHHHHHH--HHcCCCCCeEeHHHHHHHHHHHc----cC
Confidence            44567777776664        344444455444433322  2222222  25566666666666666554211    11


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----c----------------CCHHHHHHHHHhcCCCCCcccHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----Q----------------QNPLVQRVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~----------------~~~~~~~l~~~~D~d~dG~I~~~EF~  295 (473)
                      ...+.+..+|+.+|.|++|+|+.+||..+.. .    +                ....+..+|..+|.|++|.|+|+||+
T Consensus        92 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~  171 (204)
T 1jba_A           92 TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFV  171 (204)
T ss_dssp             CCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            2234455666666666666666666665321 1    0                01235556666666666666666666


Q ss_pred             HHHh
Q psy4132         296 QGVS  299 (473)
Q Consensus       296 ~~l~  299 (473)
                      .++.
T Consensus       172 ~~~~  175 (204)
T 1jba_A          172 EGAR  175 (204)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5553

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.29  E-value=6.1e-12  Score=131.13  Aligned_cols=131  Identities=23%  Similarity=0.426  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhH----HHHHHHHhhhhh-------hhhhhhhcccccccccCCCCCceeHHHHHH
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSM----AKEMVEISKNIS-------NKIINRQGEITEDDSNKDRDGKINFQEFCS  224 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~----~~~l~~lg~~~~-------~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~  224 (473)
                      +++...++++|..+|+       ..++    ...++.+|..++       ..  +...++.  .+|.|++|.|+|+||+.
T Consensus       331 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~--~~D~d~~g~i~~~Ef~~  406 (484)
T 3nyv_A          331 QDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEH--EVDQVLD--AVDFDKNGYIEYSEFVT  406 (484)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHH--HHHHHHH--HHTCCTTSEEEHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHH--HHHHHHH--HhCCCCCCeEeHHHHHH
Confidence            4456678888988887       4555    344445555555       22  3333443  37888889999999988


Q ss_pred             HHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         225 IVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       225 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ++...    ......+.+..+|+.||.|++|+|+.+||+.++..  .....++.+|+.+|.|+||.|+|+||+.+|..+
T Consensus       407 ~~~~~----~~~~~~~~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~  481 (484)
T 3nyv_A          407 VAMDR----KTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL  481 (484)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred             HHHhc----cccCcHHHHHHHHHHHCCCCCCcCCHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHhh
Confidence            77621    22345567888899999999999999998886432  223457888888999999999999998888654

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=99.28  E-value=4.9e-12  Score=103.97  Aligned_cols=100  Identities=20%  Similarity=0.345  Sum_probs=79.2

Q ss_pred             HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-
Q psy4132         189 ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-  267 (473)
Q Consensus       189 lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-  267 (473)
                      ++..++..  ++..++..  +|.  +|.|+|+||+.++..      .....+.++.+|+.+|.|++|+|+.+||+.+.. 
T Consensus         2 l~~~~s~~--ei~~~~~~--~d~--~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~   69 (109)
T 5pal_A            2 MTKVLKAD--DINKAISA--FKD--PGTFDYKRFFHLVGL------KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKG   69 (109)
T ss_dssp             GGGTSCHH--HHHHHHHH--TCS--TTCCCHHHHHHHHTC------TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHH
T ss_pred             CCCcCCHH--HHHHHHHH--hCC--CCcCcHHHHHHHHhh------ccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            45556655  56655543  555  899999999999873      234677899999999999999999999999543 


Q ss_pred             c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         268 L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       268 ~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +   +   ....++.++..+|.|++|.|+|+||+.++..
T Consensus        70 ~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 5pal_A           70 FSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             HCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            2   2   2335889999999999999999999998854

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=99.28  E-value=8.6e-12  Score=119.01  Aligned_cols=87  Identities=20%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----c-----------CCH
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----Q-----------QNP  272 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~-----------~~~  272 (473)
                      +|.|++|.|+|+||..++....    .....+.+..+|+.+|.|++|+|+.+||..+.. .    +           ...
T Consensus       138 ~D~d~dG~I~~~Ef~~~l~~~~----~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~  213 (256)
T 2jul_A          138 FDADGNGAIHFEDFVVGLSILL----RGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLE  213 (256)
T ss_dssp             SSCSCCSEECSHHHHHHHHHHH----SCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHH
T ss_pred             hccCCCCcCcHHHHHHHHHHHh----ccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHH
Confidence            5666666666666666554211    112344566666666666666666666665321 1    1           112


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .++.+|..+|.|++|.|+|+||+.++.
T Consensus       214 ~~~~~f~~~D~d~dG~Is~~Ef~~~~~  240 (256)
T 2jul_A          214 HVERFFQKMDRNQDGVVTIDEFLETCQ  240 (256)
T ss_dssp             HHHHHHHHSCCSTTCSBCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence            355666666666666666666666554

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=99.27  E-value=6.4e-12  Score=103.20  Aligned_cols=100  Identities=21%  Similarity=0.311  Sum_probs=80.9

Q ss_pred             HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-
Q psy4132         189 ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-  267 (473)
Q Consensus       189 lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-  267 (473)
                      +|.+++..  ++..++..  +|  ++|.|+|+||+.++..      .....+.++.+|+.+|.|++|+|+.+||+.+.. 
T Consensus         2 lg~~~t~~--e~~~~~~~--~d--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~   69 (109)
T 1rwy_A            2 MTDLLSAE--DIKKAIGA--FT--AADSFDHKKFFQMVGL------KKKSADDVKKVFHILDKDKSGFIEEDELGSILKG   69 (109)
T ss_dssp             HHHHSCHH--HHHHHHHT--TC--STTCCCHHHHHHHHTG------GGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHH
T ss_pred             CCCcCCHH--HHHHHHHH--cC--CCCcEeHHHHHHHHhc------CcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH
Confidence            56777776  66666654  56  8899999999999862      245678899999999999999999999999643 


Q ss_pred             c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         268 L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       268 ~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .   +   ....++.++..+|.|++|.|+|+||+.++..
T Consensus        70 ~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 1rwy_A           70 FSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAE  108 (109)
T ss_dssp             HCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHT
T ss_pred             HhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHc
Confidence            3   2   2335889999999999999999999998753

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=99.27  E-value=1.2e-11  Score=126.28  Aligned_cols=131  Identities=24%  Similarity=0.399  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         162 QKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       162 ~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      ..+....++++|..+|+       ..++...|..++..++..  +...++.  .+|.|++|.|+|+||+.++....   .
T Consensus       307 s~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~e--el~~Lf~--~~D~DgdG~IsfeEFl~ll~~~~---~  379 (450)
T 3sg6_A          307 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMIN--EVDADGNGTIDFPEFLTMMARKM---K  379 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHH--HHHHHHH--TTCTTSSSSEEHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHH--HHHHHHH--HhccCCCCcccHHHHHHHHHhhc---c
Confidence            34456789999999998       788889999999888776  5666655  38999999999999999887321   1


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .....+.++.+|+.+|.|++|+|+.+||+.++ ..+   ....++.++..+|.|++|.|+|+||+.++.
T Consensus       380 ~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~  448 (450)
T 3sg6_A          380 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  448 (450)
T ss_dssp             ---CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred             ccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            23345689999999999999999999999964 232   234588999999999999999999999874

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=99.26  E-value=2.3e-11  Score=106.89  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             ccCCCCCceeHHHHHHHHcc---ccccccchHHHHHH--------HHHHHhhCCCCCCCccHHHHhcchhcc---C----
Q psy4132         209 SNKDRDGKINFQEFCSIVGN---TDIHKKMVVDIRRL--------GKRFRKLDLDNSGALSIDEFMSLPELQ---Q----  270 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~---~~~~~~~~~~~~~l--------~~~F~~~D~d~~G~Is~~el~~l~~~~---~----  270 (473)
                      +|.|++|.|+++||..++..   .............+        ..+|+.+|.+++|.|+.+||..+....   .    
T Consensus        13 ~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~   92 (166)
T 3akb_A           13 FDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRF   92 (166)
T ss_dssp             HCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTHHHHHHHSHHHH
T ss_pred             HcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCccch
Confidence            68899999999999887531   11112223333333        477999999999999999998853211   1    


Q ss_pred             ----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHh
Q psy4132         271 ----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALI  339 (473)
Q Consensus       271 ----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~  339 (473)
                          ...+..+|+.+|.|++|.|+++||..++....   ..++.+..+|+.+|.|++|.++.   +|+..++.
T Consensus        93 ~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~---~~~~~~~~~~~~~D~d~dg~i~~---~ef~~~~~  159 (166)
T 3akb_A           93 AEMARPFLHAALGVADTDGDGAVTVADTARALTAFG---VPEDLARQAAAALDTDGDGKVGE---TEIVPAFA  159 (166)
T ss_dssp             HHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHHHTT---CCHHHHHHHHHHHCTTCSSBCCH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC---CCHHHHHHHHHHhCCCCCCcCcH---HHHHHHHH
Confidence                11267889999999999999999999988763   67788999999999999866666   34444443

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=99.26  E-value=5.2e-12  Score=103.79  Aligned_cols=100  Identities=18%  Similarity=0.284  Sum_probs=80.4

Q ss_pred             HHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-
Q psy4132         188 EISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-  266 (473)
Q Consensus       188 ~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-  266 (473)
                      ++|.+++..  ++..++..  +|  ++|.|+|+||+.++..      .......++.+|+.+|.|++|+|+.+||+.+. 
T Consensus         2 slg~~~~~~--e~~~~~~~--~d--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~   69 (109)
T 1bu3_A            2 AFSGILADA--DVAAALKA--CE--AADSFNYKAFFAKVGL------TAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQ   69 (109)
T ss_dssp             CCSCSSCHH--HHHHHHHH--TC--STTCCCHHHHHHHHTG------GGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHH
T ss_pred             cccccCCHH--HHHHHHHH--hC--CCCcCcHHHHHHHHHc------ChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence            356677766  66666654  55  8899999999998862      23467889999999999999999999999953 


Q ss_pred             hc---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         267 EL---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       267 ~~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ..   +   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        70 ~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  108 (109)
T 1bu3_A           70 VFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK  108 (109)
T ss_dssp             HHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred             HHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            33   2   234588999999999999999999998774

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=99.25  E-value=5.2e-12  Score=115.46  Aligned_cols=127  Identities=18%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      +....++++|..+|.       ..++...|+.+|..++..  ++..++..  +    +|.|+|+||+.++....   ...
T Consensus        54 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~--~~~~l~~~--~----~g~i~~~eF~~~~~~~~---~~~  122 (196)
T 3dtp_E           54 HQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQ--ELDSMVAE--A----PGPINFTMFLTIFGDRI---AGT  122 (196)
T ss_dssp             TTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHH--HHHHHHTT--S----SSCCBHHHHHHHHHHCC---CSS
T ss_pred             HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHH--HHHHHHHH--c----cCCCcHHHHHHHHHHHh---cCC
Confidence            345579999999998       788888999999888876  55555443  2    89999999999987321   123


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchhccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....+..+|+.||.|++|+|+.+||+.++.++.   ...++.++..+|.|++|.|+|+||+.+|...
T Consensus       123 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  190 (196)
T 3dtp_E          123 DEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILTKG  190 (196)
T ss_dssp             CCHHHHHHHHHTTCSSSSCCBHHHHHHHHHHSSSCCCHHHHHHHHHSSCEETTEECHHHHHHHHHSSC
T ss_pred             CcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCEEeHHHHHHHHHcC
Confidence            3467899999999999999999999999654432   2358899999999999999999999998654

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=113.64  Aligned_cols=119  Identities=18%  Similarity=0.311  Sum_probs=92.2

Q ss_pred             cccCC-CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-ccC---CHHHHHHHHHhc
Q psy4132         208 DSNKD-RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQ---NPLVQRVIDIFD  282 (473)
Q Consensus       208 ~~D~d-~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~~---~~~~~~l~~~~D  282 (473)
                      .+|.+ ++|.|+.+||..++....   ........+..+|+.+|.|++|.|+..||..++. ...   ...+..+|+.+|
T Consensus        27 ~fD~~~~~G~is~~El~~~l~~~~---~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~l~~~F~~~D  103 (211)
T 2ggz_A           27 TFMMEYPSGLQTLHEFKTLLGLQG---LNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYD  103 (211)
T ss_dssp             SHHHHCTTSEEEHHHHHHHTTCCS---CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCcCCHHHHHHHHHHhC---CCcchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhccCchHHHHHHHHHHhc
Confidence            36766 899999999999886311   1234456789999999999999999999998543 221   224788999999


Q ss_pred             CCCCCcccHHHHHHHHhhcc-----cCCCcHHHHHHHhHHhcCCCCchhhHh
Q psy4132         283 EDRNGEVDFKEFIQGVSQFS-----VKGDRESKLKFAFRIYDIDNDDDYYQA  329 (473)
Q Consensus       283 ~d~dG~I~~~EF~~~l~~~~-----~~~~~~e~l~~~F~~~D~d~dg~~~~~  329 (473)
                      .|++|.|+++||..++....     .....++.+..+|+.+|.|++|.++..
T Consensus       104 ~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~  155 (211)
T 2ggz_A          104 ADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE  155 (211)
T ss_dssp             TTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHH
T ss_pred             CCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHH
Confidence            99999999999999998764     233445678999999999999666653

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=99.24  E-value=1.8e-11  Score=112.80  Aligned_cols=131  Identities=18%  Similarity=0.314  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|.       ..++.. +..++.+++..  +   .+  ..+|.+++|.|+|+||+.++.........
T Consensus        25 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~-~~~lg~~~~~~--~---l~--~~~d~~~~g~i~~~EF~~~~~~~~~~~~~   96 (208)
T 2ct9_A           25 HSQITRLYSRFTSLDKGENGTLSREDFQR-IPELAINPLGD--R---II--NAFFSEGEDQVNFRGFMRTLAHFRPIEDN   96 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECTGGGGG-CHHHHTSTTHH--H---HH--HTTSCTTCSCEEHHHHHHHHHTTSCCC--
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHH-HHHcCCCCcHH--H---HH--HHHcCCCCCcCcHHHHHHHHHhhccccch
Confidence            4456679999999997       445544 34677766533  2   22  23789999999999999988732211000


Q ss_pred             ------------hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-cC---CHHHHHH----HHHhcCCCCCcccHHHH
Q psy4132         236 ------------VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-QQ---NPLVQRV----IDIFDEDRNGEVDFKEF  294 (473)
Q Consensus       236 ------------~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-~~---~~~~~~l----~~~~D~d~dG~I~~~EF  294 (473)
                                  ....+.++.+|+.+|.|++|+|+.+||+.+.. . +.   ...++.+    +..+|.|++|.|+|+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF  176 (208)
T 2ct9_A           97 EKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEF  176 (208)
T ss_dssp             ---------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHH
T ss_pred             hhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHH
Confidence                        12678899999999999999999999999643 2 32   2234455    99999999999999999


Q ss_pred             HHHHhhc
Q psy4132         295 IQGVSQF  301 (473)
Q Consensus       295 ~~~l~~~  301 (473)
                      +.++...
T Consensus       177 ~~~~~~~  183 (208)
T 2ct9_A          177 VKVLEKV  183 (208)
T ss_dssp             HHTTTTS
T ss_pred             HHHHhcc
Confidence            9988654

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=99.24  E-value=5.5e-12  Score=117.44  Aligned_cols=133  Identities=17%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHH-Hhhhhhhhhhhhhcccccc------cc-cCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVE-ISKNISNKIINRQGEITED------DS-NKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~-lg~~~~~~~~~~~~~~~~~------~~-D~d~dG~I~f~EF~~~~~  227 (473)
                      .+....++++|..+|.       ..++...|.. +|..++..  ++..++...      .+ |.|++|.|+|.||+.++.
T Consensus        44 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~  121 (219)
T 3cs1_A           44 AEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTS--RVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRL  121 (219)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCS--CHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHH--HHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHH
Confidence            4456779999999998       6778788877 78777654  333322110      01 347899999999998765


Q ss_pred             cccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hc----cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         228 NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-EL----QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       228 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~----~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..    ........+..+|+.+|.|++|+|+.+||+.++ .+    .....++.+|..+|.|++|.|+|+||+.++...
T Consensus       122 ~~----~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~~  196 (219)
T 3cs1_A          122 ML----CYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAV  196 (219)
T ss_dssp             HH----HHHHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHHH
T ss_pred             HH----hccchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            21    112345789999999999999999999999953 22    234458999999999999999999999988653

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=99.24  E-value=1.1e-11  Score=101.62  Aligned_cols=99  Identities=22%  Similarity=0.324  Sum_probs=78.8

Q ss_pred             HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-
Q psy4132         189 ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-  267 (473)
Q Consensus       189 lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-  267 (473)
                      |+.+++..  +++.++..  +|  ++|.|+|+||+.++..      .......++.+|+.+|.|++|+|+.+||+.+.. 
T Consensus         2 l~~~~t~~--e~~~~~~~--~d--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~   69 (108)
T 1rro_A            2 ITDILSAE--DIAAALQE--CQ--DPDTFEPQKFFQTSGL------SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK   69 (108)
T ss_dssp             GGGTSCHH--HHHHHHHH--TC--STTCCCHHHHHHHHSG------GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGG
T ss_pred             ccccCCHH--HHHHHHHH--cc--CCCCcCHHHHHHHHhc------CcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            45566666  66666553  55  8899999999998862      234677899999999999999999999999643 


Q ss_pred             c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         268 L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       268 ~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      +   +   ....++.++..+|.+++|.|+|+||+.++.
T Consensus        70 ~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 1rro_A           70 FQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             TCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence            3   1   233588999999999999999999998774

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.23  E-value=1.5e-11  Score=128.29  Aligned_cols=133  Identities=21%  Similarity=0.378  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHH----HHHHHHhhhhhhh--------hhhhhcccccccccCCCCCceeHHHHH
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMA----KEMVEISKNISNK--------IINRQGEITEDDSNKDRDGKINFQEFC  223 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~----~~l~~lg~~~~~~--------~~~~~~~~~~~~~D~d~dG~I~f~EF~  223 (473)
                      .+...+++++|..+|+       ..|+.    ..++.+|..++..        ..++..++.  .+|.|++|.|+|+||+
T Consensus       327 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~D~d~dG~I~~~Ef~  404 (486)
T 3mwu_A          327 LDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMP--LLDMDGSGSIEYSEFI  404 (486)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHH--HHCTTCCSSBCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHH--HhcCCCCCcCcHHHHH
Confidence            4566789999999998       45553    3344555554411        113333443  3799999999999999


Q ss_pred             HHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         224 SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ..+...    ......+.+..+|+.||.|++|+|+.+||+.++. .+   ....++.+|..+|.|+||.|+|+||+.++.
T Consensus       405 ~~~~~~----~~~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~  480 (486)
T 3mwu_A          405 ASAIDR----TILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQ  480 (486)
T ss_dssp             HHHSCT----TTTCCHHHHHHHHHHHCSSCSSSBCSSCC--------------------CCCCSSCSSSBCHHHHHHHHH
T ss_pred             HHHHhh----hccchHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            987632    2223456799999999999999999999998643 22   234578999999999999999999999987


Q ss_pred             hc
Q psy4132         300 QF  301 (473)
Q Consensus       300 ~~  301 (473)
                      .+
T Consensus       481 ~~  482 (486)
T 3mwu_A          481 NF  482 (486)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=99.23  E-value=5.3e-12  Score=108.38  Aligned_cols=103  Identities=13%  Similarity=0.035  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccc
Q psy4132         271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTML  350 (473)
Q Consensus       271 ~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~  350 (473)
                      .|.+.+++..+|.|++|.|+|+||+.++..........+.++.+|+.||+|++|.+..   +++..++..          
T Consensus         2 ~p~~~~l~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~---~el~~~l~~----------   68 (135)
T 3h4s_E            2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITA---ESLRRNSGI----------   68 (135)
T ss_dssp             -----------------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCH---HHHHHHGGG----------
T ss_pred             ChhHHHHHHHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCH---HHHHHHHHH----------
Confidence            4567789999999999999999999998775444455688999999999999955554   344444432          


Q ss_pred             hhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         351 LTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       351 l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                . |.+.++.+++..+++.+|.|+||.|+++||...+.
T Consensus        69 ----------~-g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~  104 (135)
T 3h4s_E           69 ----------L-GIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMV  104 (135)
T ss_dssp             ----------G-TCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHH
T ss_pred             ----------h-CCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence                      1 21248899999999999999999999999987765

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=99.21  E-value=4.2e-11  Score=108.08  Aligned_cols=160  Identities=19%  Similarity=0.211  Sum_probs=116.2

Q ss_pred             CCCCCccHHHHhcchhc--cCCHHHHHHHHHhcCC-CCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhH
Q psy4132         252 DNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDED-RNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQ  328 (473)
Q Consensus       252 d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D~d-~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~  328 (473)
                      ++.+.|+.+++..+...  .....+..++..+|.+ ++|.|+++||..++..+.....+.+.+..+|+.+|.|++|.+..
T Consensus         3 ~~~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~   82 (190)
T 1fpw_A            3 AKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHF   82 (190)
T ss_dssp             CCSCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECH
T ss_pred             cccCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcEeH
Confidence            45678888998886533  2344688999999987 89999999999999887544556677999999999999965555


Q ss_pred             hhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceee----e----
Q psy4132         329 ALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVL----Q----  400 (473)
Q Consensus       329 ~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl----~----  400 (473)
                      .   |+...+.                    ....  ..+.+++..+|+.+|.|++|.|+++||...+..+    .    
T Consensus        83 ~---ef~~~~~--------------------~~~~--~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~  137 (190)
T 1fpw_A           83 E---EFITVLS--------------------TTSR--GTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVT  137 (190)
T ss_dssp             H---HHHHHHH--------------------HHSC--CCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTS
T ss_pred             H---HHHHHHH--------------------HHcc--CCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccC
Confidence            3   3333332                    2211  2567789999999999999999999999877642    1    


Q ss_pred             --ecccCcHHHHHHHHHHHhh--CCCCCHHHHHHhhCCcH
Q psy4132         401 --LKSCEDASFVEKTYEIVSQ--NVFVTVEQFSRLASVSL  436 (473)
Q Consensus       401 --~~~~~~~~~~~~~~~~~~~--~~~ls~~e~a~~~~~s~  436 (473)
                        .........+..+++.++.  +|.||..||.+.+.-..
T Consensus       138 ~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~  177 (190)
T 1fpw_A          138 LNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDP  177 (190)
T ss_dssp             SSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSST
T ss_pred             cccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhCh
Confidence              0111234556777777654  57899999998875443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.20  E-value=7.3e-12  Score=133.88  Aligned_cols=132  Identities=10%  Similarity=0.083  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      ....++++|+.||.|++|+|+.+||+.++ .++.   ...++.+|+.+|.|++|.|+|+||+.++..+..    ++.++.
T Consensus         9 ~e~~l~~~F~~fD~d~dG~Is~~El~~~l~~lg~~~s~~el~~lf~~~D~d~~G~I~f~EF~~~~~~l~~----~~el~~   84 (624)
T 1djx_A            9 LQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQ----RAEIDR   84 (624)
T ss_dssp             -----------------------------------------------------------CTTHHHHHHTC----CHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhcc----HHHHHH
Confidence            34578999999999999999999999853 3332   235789999999999999999999999987632    367999


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC----CCCCeeH
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL----PDSPIYL  389 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~----~dg~Is~  389 (473)
                      +|+.||.+ +|.++                       ..|+...+....|...++++++.++++.+|.+    ++|.|++
T Consensus        85 aF~~fD~~-~G~Is-----------------------~~EL~~fL~~~qge~~ls~ee~~~ii~~~d~d~~~~~dG~Is~  140 (624)
T 1djx_A           85 AFEEAAGS-AETLS-----------------------VERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTK  140 (624)
T ss_dssp             HHHHHHTT-SSSEE-----------------------HHHHHHHHHHTSCCSSCSHHHHHHHHHHHCCCHHHHHTTEECH
T ss_pred             HHHHhcCC-CCeec-----------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCChhhccCCCCCH
Confidence            99999974 53333                       33443333333332237899999999999998    7999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...+.
T Consensus       141 deF~~~L~  148 (624)
T 1djx_A          141 DGFLMYLL  148 (624)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987665

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=99.18  E-value=2.7e-11  Score=103.94  Aligned_cols=91  Identities=12%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             cccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHHHHHHHHHhc
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPLVQRVIDIFD  282 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~~~~l~~~~D  282 (473)
                      .+|.|++|.|+|+||+.++...   .......+.++.+|+.||.|++|+|+.+||+.++ .++    ....++.++..+|
T Consensus        11 ~~D~d~~G~I~~~EF~~~~~~~---~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D   87 (135)
T 3h4s_E           11 ETTSTTKMETKYEDMLPVMAEK---MDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGD   87 (135)
T ss_dssp             --------CCCC--------------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHC
T ss_pred             HHcCCCCCcEeHHHHHHHHHHH---ccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence            4899999999999999988732   1234456889999999999999999999999954 333    2235899999999


Q ss_pred             CCCCCcccHHHHHHHHhhc
Q psy4132         283 EDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       283 ~d~dG~I~~~EF~~~l~~~  301 (473)
                      .|++|.|+|+||+.++...
T Consensus        88 ~d~dG~I~~~EF~~~~~~~  106 (135)
T 3h4s_E           88 LDGDGALNQTEFCVLMVRL  106 (135)
T ss_dssp             SSCSSSBCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHh
Confidence            9999999999999998765

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=99.17  E-value=5.4e-11  Score=107.22  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhhhh-----hhhHHHHHHHHhhhhhhhhhhhhccccccccc---CCCCCceeHHHHHHHHccccccccch
Q psy4132         165 TSSNINNAFKDLNQ-----LMSMAKEMVEISKNISNKIINRQGEITEDDSN---KDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-----~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D---~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ...+++++|..||.     ..++..   .+|..++..  ....++..  +|   .+++|.|+|.||..++...    ...
T Consensus        26 ~~~~~~~~F~~~D~dG~I~~~el~~---~lg~~~~~~--~~~~i~~~--~d~~~~~~~~~i~~~ef~~~~~~~----~~~   94 (179)
T 3a8r_A           26 GWAAVEKRFNQLQVDGVLLRSRFGK---CIGMDGSDE--FAVQMFDS--LARKRGIVKQVLTKDELKDFYEQL----TDQ   94 (179)
T ss_dssp             CHHHHHHHHHHHCBTTBEEGGGHHH---HHTCCSCHH--HHHHHHHH--HHHHHTCCSSEECHHHHHHHHHHH----HCC
T ss_pred             hHHHHHHHHhccCCCCCCcHHHHHH---HHCCCCcHH--HHHHHHHH--HHHhccCCCCCcCHHHHHHHHHHH----cCC
Confidence            35689999999995     455554   346665544  23333321  33   4667889999999887521    112


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch--hccCC----------HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP--ELQQN----------PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~--~~~~~----------~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.++.+|+.||.|++|+|+.+||+.++  .++..          ..++.++..+|.|++|.|+|+||+.++...
T Consensus        95 ~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  171 (179)
T 3a8r_A           95 GFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQS  171 (179)
T ss_dssp             CHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence            456789999999999999999999999965  34433          247899999999999999999999988654

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=99.17  E-value=1e-10  Score=95.91  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.+++.+|  ++|.|+|+||+.++..   .....+.++.+|+.||.|++|.+..   +++..++.....        
T Consensus        10 ~ei~~~~~~~D--~~g~i~~~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~i~~---~el~~~l~~~~~--------   73 (109)
T 3fs7_A           10 KDIESALSSCQ--AADSFNYKSFFSTVGL---SSKTPDQIKKVFGILDQDKSGFIEE---EELQLFLKNFSS--------   73 (109)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHSTTCSSSBCH---HHHHTTGGGTCT--------
T ss_pred             HHHHHHHHhcC--CCCcCcHHHHHHHHhc---CCCcHHHHHHHHHHHCCCCCCeEeH---HHHHHHHHHHhc--------
Confidence            45788999998  7999999999999865   3557889999999999999965555   344444432100        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                .| ..++++++..+++.+|.|+||.|+++||...++
T Consensus        74 ----------~~-~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~  108 (109)
T 3fs7_A           74 ----------SA-RVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK  108 (109)
T ss_dssp             ----------TS-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred             ----------cc-ccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence                      02 248899999999999999999999999987653

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=99.17  E-value=3.4e-11  Score=108.37  Aligned_cols=146  Identities=13%  Similarity=0.145  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHH------hhhhhhhhhhhhccc-------ccccccCCCCCceeHHHH
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEI------SKNISNKIINRQGEI-------TEDDSNKDRDGKINFQEF  222 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~l------g~~~~~~~~~~~~~~-------~~~~~D~d~dG~I~f~EF  222 (473)
                      .+....++++|..+|+       ..++...|+.+      |..++..  ++..++       ....+|.|++|.|+|+| 
T Consensus        10 ~~~~~~l~~~F~~~D~d~dG~i~~~El~~~l~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~f~~~D~d~dg~I~~~E-   86 (186)
T 2hps_A           10 AYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEE--TRQEFLRVADQLGLAPGVRISVEEAAVNAT-   86 (186)
T ss_dssp             HHHHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHHHHHHHTCCTTCEEEHHHHHHHHH-
T ss_pred             HHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHHHHhcCCCCCCcccHHH-
Confidence            3445679999999998       67777778776      7777655  444332       02358999999999999 


Q ss_pred             HHHHccccccccchHHHHHHHHHH--HhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         223 CSIVGNTDIHKKMVVDIRRLGKRF--RKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~F--~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                       .++...   .........+..+|  ..||.|++|+|+.+||+.+. ..+   ....+..+|..+|.|++|.|+|+||+.
T Consensus        87 -~~~~~~---~~~~~~~~~~~~~f~~~~fD~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~ef~~  162 (186)
T 2hps_A           87 -DSLLKM---KGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLV  162 (186)
T ss_dssp             -HHHHHC---CTHHHHHTTHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             -HHHHHh---cCChHHHHHHHHHHHHHHccCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHH
Confidence             444311   11223344566666  88899999999999999964 233   233588999999999999999999999


Q ss_pred             HHhhcccCCCcHHHHHHHh
Q psy4132         297 GVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       297 ~l~~~~~~~~~~e~l~~~F  315 (473)
                      ++........+......+|
T Consensus       163 ~~~~~~~~~~~~~~~~~l~  181 (186)
T 2hps_A          163 TVNDFLFGLEETALANAFY  181 (186)
T ss_dssp             HHHHHHHCSSCCHHHHHHT
T ss_pred             HHHHHhcCCCCCCcccccc
Confidence            9877644333333333333

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=99.15  E-value=1.8e-10  Score=94.45  Aligned_cols=100  Identities=24%  Similarity=0.278  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccc
Q psy4132         271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTML  350 (473)
Q Consensus       271 ~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~  350 (473)
                      ...++.+++.+|.  +|.|+|+||+.++..   .....+.++.+|+.||+|++|.+...   ++..++.....       
T Consensus         8 ~~ei~~~~~~~d~--~g~i~~~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~i~~~---el~~~l~~~~~-------   72 (109)
T 5pal_A            8 ADDINKAISAFKD--PGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQSGFIEEE---ELKGVLKGFSA-------   72 (109)
T ss_dssp             HHHHHHHHHHTCS--TTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHCTTCSSEECHH---HHHTHHHHHCT-------
T ss_pred             HHHHHHHHHHhCC--CCcCcHHHHHHHHhh---ccCcHHHHHHHHHHHCCCCCCcCcHH---HHHHHHHHHHH-------
Confidence            3457889999987  899999999998864   35577899999999999999665553   33333332100       


Q ss_pred             hhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         351 LTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       351 l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                 .| ..++++++..+++.+|.|+||.|+++||...++
T Consensus        73 -----------~g-~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (109)
T 5pal_A           73 -----------HG-RDLNDTETKALLAAGDSDHDGKIGADEFAKMVA  107 (109)
T ss_dssp             -----------TC-CCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred             -----------cC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence                       02 248899999999999999999999999987653

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=99.14  E-value=1.3e-10  Score=107.82  Aligned_cols=124  Identities=17%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhhhh---------------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCc-eeHHHHHHHHccc
Q psy4132         166 SSNINNAFKDLNQ---------------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGK-INFQEFCSIVGNT  229 (473)
Q Consensus       166 ~~~l~eaF~~lD~---------------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~-I~f~EF~~~~~~~  229 (473)
                      ...+.++|..+|.               ..++.. |..++.++...  ++   +  ..+|.|++|. |+|+||+.++...
T Consensus        50 i~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~-l~~lg~~~~~~--~l---f--~~~D~d~dG~~I~f~EF~~~~~~~  121 (214)
T 2l4h_A           50 ILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKE--RI---C--RVFSTSPAKDSLSFEDFLDLLSVF  121 (214)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT-CHHHHTSTTHH--HH---H--HHHCCSSSCCSEEHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccccccccccCCcCCHHHHHH-hhccCCChHHH--HH---H--HHhCcCCCCCEecHHHHHHHHHHH
Confidence            3456667776653               233444 66677666543  22   2  2368999999 9999999988732


Q ss_pred             cccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c--------cCCHHH----HHHHHHhcCCCCCcccHHHHHH
Q psy4132         230 DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L--------QQNPLV----QRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       230 ~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~--------~~~~~~----~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      .   ......+.++.+|+.||.|++|+|+.+||+.+.. +        .....+    +.++..+|.|++|.|+|+||+.
T Consensus       122 ~---~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~  198 (214)
T 2l4h_A          122 S---DTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH  198 (214)
T ss_dssp             S---SCSCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHH
T ss_pred             c---CCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            1   1223467899999999999999999999998532 2        122333    3599999999999999999999


Q ss_pred             HHhh
Q psy4132         297 GVSQ  300 (473)
Q Consensus       297 ~l~~  300 (473)
                      ++..
T Consensus       199 ~~~~  202 (214)
T 2l4h_A          199 VISR  202 (214)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8864

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=99.11  E-value=8.3e-11  Score=105.72  Aligned_cols=125  Identities=17%  Similarity=0.270  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhhh---------------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCc-eeHHHHHHHHcc
Q psy4132         165 TSSNINNAFKDLNQ---------------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGK-INFQEFCSIVGN  228 (473)
Q Consensus       165 ~~~~l~eaF~~lD~---------------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~-I~f~EF~~~~~~  228 (473)
                      ....+.++|..+|.               ..++.. |+.+|.+++..  +   ++.  .+|.+++|. |+|+||+.++..
T Consensus        18 ~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~~~~~~--~---l~~--~~D~d~~G~~I~~~EF~~~~~~   89 (183)
T 1dgu_A           18 EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKE--R---ICR--VFSTSPAKDSLSFEDFLDLLSV   89 (183)
T ss_dssp             HHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSSCTTHH--H---HHH--HHSCSSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhcCcHHH--H---HHH--HhCCCCCCCEecHHHHHHHHHH
Confidence            34568899998875               133444 55555555433  2   222  368899999 999999998873


Q ss_pred             ccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-----C---HHHH----HHHHHhcCCCCCcccHHHHH
Q psy4132         229 TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-----N---PLVQ----RVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       229 ~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-----~---~~~~----~l~~~~D~d~dG~I~~~EF~  295 (473)
                      ..   ........++.+|+.+|.|++|+|+.+||+.+. ..+.     .   ..++    .++..+|.|++|.|+|+||+
T Consensus        90 ~~---~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~  166 (183)
T 1dgu_A           90 FS---DTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  166 (183)
T ss_dssp             HS---TTCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHH
T ss_pred             hc---CCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            21   112345689999999999999999999999853 3322     1   1233    48999999999999999999


Q ss_pred             HHHhh
Q psy4132         296 QGVSQ  300 (473)
Q Consensus       296 ~~l~~  300 (473)
                      .++..
T Consensus       167 ~~~~~  171 (183)
T 1dgu_A          167 HVISR  171 (183)
T ss_dssp             HHHCS
T ss_pred             HHHHh
Confidence            88854

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=99.11  E-value=1.2e-10  Score=100.48  Aligned_cols=121  Identities=10%  Similarity=0.171  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         166 SSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       166 ~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      ...++++|..+|.        ..++...|+.+|..++..  ++...+..  +|.+    |+|+||+.++....   ....
T Consensus        13 ~~~l~~~F~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~--~~~~l~~~--~d~~----i~~~eF~~~~~~~~---~~~~   81 (146)
T 2qac_A           13 KVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSI--DEKKIKEL--YGDN----LTYEQYLEYLSICV---HDKD   81 (146)
T ss_dssp             HSCHHHHHHHHHHHCBTTBEEHHHHHHHHHHTTCCCCHH--HHHHHHHH--HCSE----ECHHHHHHHHHHTC---CTTC
T ss_pred             HHHHHHHHHHhCccCCCCcccHHHHHHHHHHhCCCCCHH--HHHHHHHH--hCCC----CCHHHHHHHHHHHh---cCcc
Confidence            3468999999986        467778888888888766  55555543  4554    99999999887321   1233


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+..+|+.+|.|++|+|+.+||+.+. ..+   ....++.++..+  |++|.|+|+||+.++.
T Consensus        82 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l~  145 (146)
T 2qac_A           82 NVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDIL  145 (146)
T ss_dssp             CHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHHh
Confidence            56789999999999999999999999864 333   233578899988  9999999999998874

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=99.10  E-value=3.6e-10  Score=92.48  Aligned_cols=98  Identities=18%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.+++.+|  ++|.|+|+||+.++...   ....+.++.+|+.||.|++|.+..   +++..++.....        
T Consensus         9 ~e~~~l~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~---~el~~~l~~~~~--------   72 (108)
T 2pvb_A            9 ADVAAALAACS--AADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEE---DELKLFLQNFSP--------   72 (108)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCH---HHHHTGGGGTCT--------
T ss_pred             HHHHHHHHHhC--CCCcCcHHHHHHHHhCC---hhHHHHHHHHHHHHCCCCCCcCCH---HHHHHHHHHHhc--------
Confidence            45778899988  78999999999988542   456788999999999999955555   344444332100        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                .| ..++++++..+++.+|.|+||.|+++||...+
T Consensus        73 ----------~g-~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~  106 (108)
T 2pvb_A           73 ----------SA-RALTDAETKAFLADGDKDGDGMIGVDEFAAMI  106 (108)
T ss_dssp             ----------TS-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             ----------cC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence                      02 24889999999999999999999999998654

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=99.10  E-value=9.5e-12  Score=102.04  Aligned_cols=99  Identities=20%  Similarity=0.305  Sum_probs=78.3

Q ss_pred             HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-
Q psy4132         189 ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-  267 (473)
Q Consensus       189 lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-  267 (473)
                      |+.+++..  ++..++..  +|  ++|.|+|+||+.++..      .....+.++.+|+.+|.|++|+|+.+||+.+.. 
T Consensus         2 l~~~~~~~--e~~~l~~~--~d--~~g~i~~~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~   69 (108)
T 2kyc_A            2 LTDILSPS--DIAAALRD--CQ--APDSFSPKKFFQISGM------SKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQR   69 (108)
T ss_dssp             TTSSSCHH--HHHHHHTT--SC--STTTCCHHHHHHHHTC------TTCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHH
T ss_pred             ccccCCHH--HHHHHHHH--cC--CCCcCCHHHHHHHHhh------CcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            45566666  66666653  55  8899999999999862      133456789999999999999999999999643 


Q ss_pred             c---c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         268 L---Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       268 ~---~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .   +   ....++.++..+|.|++|.|+|+||+.++.
T Consensus        70 ~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~  107 (108)
T 2kyc_A           70 FESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQ  107 (108)
T ss_dssp             HSSSCCCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred             HhhccCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence            2   2   234588999999999999999999998874

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=99.10  E-value=3.2e-10  Score=92.98  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.++..+|  ++|.|+|+||+.++...   ....+.++.+|+.||.|++|.+...   ++..++.            
T Consensus        10 ~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~---el~~~l~------------   69 (109)
T 1bu3_A           10 ADVAAALKACE--AADSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKSGFIEED---ELKLFLQ------------   69 (109)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSEEHH---HHHTHHH------------
T ss_pred             HHHHHHHHHhC--CCCcCcHHHHHHHHHcC---hhhHHHHHHHHHHHCCCCCCcCcHH---HHHHHHH------------
Confidence            35788899988  79999999999988543   3567889999999999999655553   3333332            


Q ss_pred             hHHHHHHHhhh--CCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRAR--GLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~--g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                              ...  | ..++++++..+++.+|.|+||.|+++||...+
T Consensus        70 --------~~~~~g-~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~  107 (109)
T 1bu3_A           70 --------VFSAGA-RALTDAETKAFLKAGDSDGDGAIGVDEWAALV  107 (109)
T ss_dssp             --------HHSTTC-CCCCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred             --------HHcccC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence                    221  2 24889999999999999999999999998754

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=99.09  E-value=3.4e-10  Score=92.64  Aligned_cols=98  Identities=17%  Similarity=0.089  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.++..+|  ++|.|+|+||+.++...   ....+.++.+|+.||.|++|.+..   +++..++.....        
T Consensus         9 ~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~---~el~~~l~~~~~--------   72 (108)
T 1rro_A            9 EDIAAALQECQ--DPDTFEPQKFFQTSGLS---KMSASQVKDIFRFIDNDQSGYLDG---DELKYFLQKFQS--------   72 (108)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHSGG---GSCHHHHHHHHHHHCTTCSSEECT---HHHHTGGGGTCT--------
T ss_pred             HHHHHHHHHcc--CCCCcCHHHHHHHHhcC---cccHHHHHHHHHHhCCCCCCcCCH---HHHHHHHHHHhh--------
Confidence            35778888888  79999999999988532   356788999999999999955555   344444432110        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                .| ..++++++..+++.+|.++||.|+++||...+
T Consensus        73 ----------~g-~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~  106 (108)
T 1rro_A           73 ----------DA-RELTESETKSLMDAADNDGDGKIGADEFQEMV  106 (108)
T ss_dssp             ----------TS-CCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHH
T ss_pred             ----------cc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence                      02 24789999999999999999999999998754

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=99.09  E-value=4e-10  Score=92.28  Aligned_cols=98  Identities=24%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.+++.+|  ++|.|+|+||+.++...   ....+.++.+|+.||.|++|.+...   ++..++.....        
T Consensus         9 ~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~---el~~~l~~~~~--------   72 (109)
T 1rwy_A            9 EDIKKAIGAFT--AADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEED---ELGSILKGFSS--------   72 (109)
T ss_dssp             HHHHHHHHTTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECHH---HHHTHHHHHCT--------
T ss_pred             HHHHHHHHHcC--CCCcEeHHHHHHHHhcC---cchHHHHHHHHHHHCCCCCCeEcHH---HHHHHHHHHhc--------
Confidence            45778888888  79999999999988542   4567889999999999999655553   33333332100        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                .| ..++++++..+++.+|.|++|.|+++||...+
T Consensus        73 ----------~g-~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~  106 (109)
T 1rwy_A           73 ----------DA-RDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV  106 (109)
T ss_dssp             ----------TC-CCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred             ----------cC-CCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence                      02 14788999999999999999999999998755

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=99.06  E-value=7.4e-10  Score=104.71  Aligned_cols=110  Identities=14%  Similarity=0.181  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.+|+.||.|++|.|+|.||+.+++.+ ..+..+++++.+|+.|| |++|.++..|+.++...+..+....+-...+
T Consensus       132 ~~a~~lf~~FD~~~~G~I~f~ef~~aLs~l-~rG~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~  209 (261)
T 1eg3_A          132 MCLNWLLNVYDTGRTGRIRVLSFKTGIISL-CKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASF  209 (261)
T ss_dssp             HHHHHHHHHHCTTCCSEEEHHHHHHHHHHT-SSSCHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred             HHHHHHHHHccCCCCceEeHHHHHHHHHHH-cCCCHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccC
Confidence            346789999999999999999999999997 67888999999999999 9997777754444443333222222111111


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                 | +.-..+-+..+|+.+|  +||.|+++||+.+++
T Consensus       210 -----------~-~~~~e~~v~~~F~~~d--~dg~It~~EFl~~~~  241 (261)
T 1eg3_A          210 -----------G-GSNIEPSVRSCFQFAN--NKPEIEAALFLDWMR  241 (261)
T ss_dssp             -----------T-CSCCHHHHHHHHHHTT--TCSCBCHHHHHHHHH
T ss_pred             -----------C-CCCHHHHHHHHHHhCC--CCCcCCHHHHHHHHH
Confidence                       1 0122344667899986  789999999999886

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.05  E-value=1.5e-10  Score=126.74  Aligned_cols=140  Identities=9%  Similarity=0.048  Sum_probs=89.5

Q ss_pred             HHHHHHHHHH--hhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcC-------CCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         238 DIRRLGKRFR--KLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDE-------DRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       238 ~~~~l~~~F~--~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~-------d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      ....++++|.  .||.|++|+|+..||..++... ...++.+++.+|.       +++|.|+|+||+.++..+.    ..
T Consensus       144 ~~~~Lk~~F~~~~fD~d~dG~Is~~EL~~~l~~~-~~ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~----~r  218 (799)
T 2zkm_X          144 RSTFLDKILVKLKMQLNSEGKIPVKNFFQMFPAD-RKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC----PR  218 (799)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSCEEHHHHHHHSCSC-HHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS----CC
T ss_pred             HHHHHHHHhHHhccCCCCCCeECHHHHHHHHhhh-HHHHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHcc----CH
Confidence            3456888999  8999999999999999965442 4668899999985       7889999999999998763    34


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC----CC
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL----PD  384 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~----~d  384 (473)
                      +.++.+|+.||.|++|.++.   ++|..+|....    |.-.+.++.       - ..++.+++.++++.+|.|    ++
T Consensus       219 ~el~~aF~~fD~d~~g~Is~---~eL~~fL~~~Q----ge~~~~~~~-------~-~~~t~ee~~~iI~~~d~d~~~~~d  283 (799)
T 2zkm_X          219 PEIDEIFTSYHAKAKPYMTK---EHLTKFINQKQ----RDSRLNSLL-------F-PPARPDQVQGLIDKYEPSGINAQR  283 (799)
T ss_dssp             HHHHTTCC--------CCCH---HHHHHHHHHTC----C-----------------------CHHHHHHHHCCC------
T ss_pred             HHHHHHHHHhccCCCCeEcH---HHHHHHHHHhc----CCccccccc-------c-cCCCHHHHHHHHHHhhcccccccC
Confidence            78999999999998865555   44444444321    100011100       0 026788899999999998    89


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||...+.
T Consensus       284 g~is~eeF~~~L~  296 (799)
T 2zkm_X          284 GQLSPEGMVWFLC  296 (799)
T ss_dssp             --CCHHHHHHHHH
T ss_pred             Cccchhhhhhccc
Confidence            9999999987765

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=99.05  E-value=6.7e-10  Score=91.07  Aligned_cols=98  Identities=21%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..++.++..+|  ++|.|+|+||+.++..   .....+.++.+|+.||.|++|.+..   +++..++.....        
T Consensus        10 ~e~~~~~~~~d--~~g~i~~~ef~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~---~el~~~l~~~~~--------   73 (110)
T 1pva_A           10 DDIKKALDAVK--AEGSFNHKKFFALVGL---KAMSANDVKKVFKAIDADASGFIEE---EELKFVLKSFAA--------   73 (110)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHTC---TTSCHHHHHHHHHHHCTTCSSSBCH---HHHHTGGGGTCT--------
T ss_pred             HHHHHHHHhcC--CCCcCcHHHHHHHHcc---CcchHHHHHHHHHHhCCCCCCcCcH---HHHHHHHHHHhh--------
Confidence            45778888888  7899999999998843   3456788999999999999955554   344444432100        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                .| ..++++++..+++.+|.|++|.|+++||...+
T Consensus        74 ----------~g-~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~  107 (110)
T 1pva_A           74 ----------DG-RDLTDAETKAFLKAADKDGDGKIGIDEFETLV  107 (110)
T ss_dssp             ----------TC-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             ----------cC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence                      02 24889999999999999999999999998755

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=99.02  E-value=9.2e-10  Score=100.89  Aligned_cols=158  Identities=11%  Similarity=0.106  Sum_probs=98.7

Q ss_pred             CCCCCCccHHHHhcchhc-cCCH----HHHHHHHHhcCC--CCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCC
Q psy4132         251 LDNSGALSIDEFMSLPEL-QQNP----LVQRVIDIFDED--RNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND  323 (473)
Q Consensus       251 ~d~~G~Is~~el~~l~~~-~~~~----~~~~l~~~~D~d--~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~d  323 (473)
                      +|++|.|+.+++..+... ...+    .+..+|..+|.|  ++|.|+++||..++..  .....+..+..+|+.+|.|++
T Consensus        11 ~~~~g~l~~~el~~l~~~~~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~--~~~~~~~~~~~~f~~~D~d~~   88 (207)
T 2ehb_A           11 KNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR--NRNRRNLFADRIFDVFDVKRN   88 (207)
T ss_dssp             ----------CHHHHHHHSSCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHS--CTTCCCHHHHHHHHHHCTTCS
T ss_pred             hccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhc--cccccHHHHHHHHHHhcCCCC
Confidence            467899999999886432 2222    256889999999  9999999999999875  233344567889999999998


Q ss_pred             chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccceee--e-
Q psy4132         324 DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVKVL--Q-  400 (473)
Q Consensus       324 g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~vl--~-  400 (473)
                      |.+..   .|+...+..                    ... ...+.+++..+|+.+|.|++|.|+.+||...++.+  . 
T Consensus        89 g~i~~---~Ef~~~~~~--------------------~~~-~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~  144 (207)
T 2ehb_A           89 GVIEF---GEFVRSLGV--------------------FHP-SAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHES  144 (207)
T ss_dssp             SEECH---HHHHHHHGG--------------------GST-TSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHH
T ss_pred             CeEeH---HHHHHHHHH--------------------Hcc-CCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHc
Confidence            65555   344443332                    211 11345668899999999999999999998877522  1 


Q ss_pred             ecccCcH---HHHHHHHHHHhh--CCCCCHHHHHHhhCC
Q psy4132         401 LKSCEDA---SFVEKTYEIVSQ--NVFVTVEQFSRLASV  434 (473)
Q Consensus       401 ~~~~~~~---~~~~~~~~~~~~--~~~ls~~e~a~~~~~  434 (473)
                      ....+++   ..+..+++.++.  +|.||..||.+.+.-
T Consensus       145 g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~  183 (207)
T 2ehb_A          145 ELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL  183 (207)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            1122222   223334445543  578999999887643

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=98.98  E-value=1.7e-09  Score=100.90  Aligned_cols=120  Identities=18%  Similarity=0.198  Sum_probs=86.8

Q ss_pred             ccCC--CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-cC----CHHHHHHHHHh
Q psy4132         209 SNKD--RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-QQ----NPLVQRVIDIF  281 (473)
Q Consensus       209 ~D~d--~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~~----~~~~~~l~~~~  281 (473)
                      +|.|  ++|.|+.+||..++...     .......+..+|+.+|.|++|.|+.+||..+... ..    ...+..+|+.+
T Consensus        57 ~D~d~~~~G~I~~~El~~~l~~~-----~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~  131 (226)
T 2zfd_A           57 ISSAVIDDGLINKEEFQLALFKT-----NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLY  131 (226)
T ss_dssp             HHTSSSCSSSBCHHHHHHHHHSC-----SSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             hCcccCCCCeEcHHHHHHHHhcc-----CcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHHHHHHHHHHHh
Confidence            4556  89999999999988631     1112235677999999999999999999985432 21    22478899999


Q ss_pred             cCCCCCcccHHHHHHHHhhc---ccCCCcHH----HHHHHhHHhcCCCCchhhHhhHHH
Q psy4132         282 DEDRNGEVDFKEFIQGVSQF---SVKGDRES----KLKFAFRIYDIDNDDDYYQALGNE  333 (473)
Q Consensus       282 D~d~dG~I~~~EF~~~l~~~---~~~~~~~e----~l~~~F~~~D~d~dg~~~~~e~~e  333 (473)
                      |.|++|.|+++||..++...   ......++    .+..+|+.+|.|++|.+..+||..
T Consensus       132 D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~  190 (226)
T 2zfd_A          132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRS  190 (226)
T ss_dssp             CTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHH
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            99999999999999998632   12222333    346778899999997777643333

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=98.98  E-value=3.6e-10  Score=97.97  Aligned_cols=106  Identities=17%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHhhccc----CCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCcc
Q psy4132         274 VQRVIDIFDEDRNGEVDFKEFIQGVSQFSV----KGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTM  349 (473)
Q Consensus       274 ~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~----~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i  349 (473)
                      ...+|..+|.|++|.|+++||+.++.....    .....+.++.+|+.||.|++|.+..   .|+..++.......+   
T Consensus        29 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~---~El~~~l~~~~~~~~---  102 (143)
T 3a4u_B           29 SFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDG---LELSTAITHVHKEEG---  102 (143)
T ss_dssp             ----------------------------------CCCHHHHHHHHHHHTCTTCSSCEEH---HHHHHTCC----------
T ss_pred             CHHHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCH---HHHHHHHHHHHhhhc---
Confidence            356888889999999999999888776533    2345678999999999999976666   455544443211000   


Q ss_pred             chhHHHHHHHhhhCCCCCCHHHHHHH----HHHhccCCCCCeeHHhhhccc
Q psy4132         350 LLTDAYCRINRARGLELLSPEDLLNS----CLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       350 ~l~d~~~~~~~~~g~~~ls~~ei~~~----~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                ...| ..++++++..+    |+.+|.|+||.|+++||...+
T Consensus       103 ----------~~~g-~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~  142 (143)
T 3a4u_B          103 ----------SEQA-PLMSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL  142 (143)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred             ----------cccC-CCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence                      0001 13677777554    599999999999999998654

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=98.97  E-value=3.1e-10  Score=98.32  Aligned_cols=91  Identities=13%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             cccCCCCCceeHHHHHHHHccccccc-cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-----------CCHHH
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHK-KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-----------QNPLV  274 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-----------~~~~~  274 (473)
                      .+|.|++|.|+++||...+....... ......+.+..+|+.||.|++|+|+.+||..+.. ++           ....+
T Consensus        35 ~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~  114 (143)
T 3a4u_B           35 SMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDEL  114 (143)
T ss_dssp             ----------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHH
Confidence            47999999999999998876321110 1123457889999999999999999999998542 21           12233


Q ss_pred             ----HHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         275 ----QRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       275 ----~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                          +.+|..+|.|++|.|+|+||+.++
T Consensus       115 ~~~~~~~f~~~D~d~dG~Is~~EF~~~~  142 (143)
T 3a4u_B          115 INIIDGVLRDDDKNNDGYIDYAEFAKSL  142 (143)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred             HHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence                455599999999999999998765

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=98.95  E-value=7.6e-10  Score=92.66  Aligned_cols=66  Identities=24%  Similarity=0.414  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh------cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE------LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~------~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+...+.+..+|+.||.| +|+|+..||+.++.      ++   ....++++++.+|.|+||.|+|+||+.+|..+
T Consensus        10 lE~~ie~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l   84 (121)
T 4drw_A           10 MEHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   84 (121)
T ss_dssp             HHHHHHHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            455678999999999998 89999999999643      22   34468999999999999999999999998765

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=98.95  E-value=1.8e-10  Score=123.12  Aligned_cols=125  Identities=8%  Similarity=0.191  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ..+..++++|+.+|+       ..++...|+.+|..++..  ++..++..  +|.|++|.|+|+||+.++....      
T Consensus         8 ~~e~~l~~~F~~fD~d~dG~Is~~El~~~l~~lg~~~s~~--el~~lf~~--~D~d~~G~I~f~EF~~~~~~l~------   77 (624)
T 1djx_A            8 KLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDG--YARKIFRE--CDHSQTDSLEDEEIETFYKMLT------   77 (624)
T ss_dssp             ----------------------------------------------------------------CTTHHHHHHT------
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCeEeHHHHHHHHHHhc------
Confidence            345679999999998       678888899999888776  66666654  8999999999999999887321      


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-c----CCHHHHHHHHHhcCC----CCCcccHHHHHHHHhh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-Q----QNPLVQRVIDIFDED----RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-~----~~~~~~~l~~~~D~d----~dG~I~~~EF~~~l~~  300 (473)
                       ..+++..+|+.||.+ +|+|+.+||+.++. . +    ....++++++.+|.+    ++|.|+|+||+.+|..
T Consensus        78 -~~~el~~aF~~fD~~-~G~Is~~EL~~fL~~~qge~~ls~ee~~~ii~~~d~d~~~~~dG~Is~deF~~~L~s  149 (624)
T 1djx_A           78 -QRAEIDRAFEEAAGS-AETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLS  149 (624)
T ss_dssp             -CCHHHHHHHHHHHTT-SSSEEHHHHHHHHHHTSCCSSCSHHHHHHHHHHHCCCHHHHHTTEECHHHHHHHHHS
T ss_pred             -cHHHHHHHHHHhcCC-CCeecHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCChhhccCCCCCHHHHHHHhcC
Confidence             125799999999986 99999999999643 2 2    234589999999998    7999999999999874

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=98.90  E-value=1.5e-09  Score=87.92  Aligned_cols=66  Identities=24%  Similarity=0.405  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+.++++++|+.||.|++|+|+.+||+.++ .++   ....++.+++.+|.|++|.|+|+||+.+|.
T Consensus        30 l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m~   99 (100)
T 2lv7_A           30 IPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLG   99 (100)
T ss_dssp             CCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHhC
Confidence            456788899999999999999999999999953 333   344689999999999999999999998763

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=98.88  E-value=3.1e-10  Score=92.83  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT  352 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~  352 (473)
                      .++.++..+|  ++|.|+|+||+.++..   .....+.++.+|+.||.|++|.+...++..++..+..            
T Consensus        10 e~~~l~~~~d--~~g~i~~~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~------------   72 (108)
T 2kyc_A           10 DIAAALRDCQ--APDSFSPKKFFQISGM---SKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFES------------   72 (108)
T ss_dssp             HHHHHHTTSC--STTTCCHHHHHHHHTC---TTCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSS------------
T ss_pred             HHHHHHHHcC--CCCcCCHHHHHHHHhh---CcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhh------------
Confidence            4678888888  7999999999998853   2445678999999999999966665443333332210            


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         353 DAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       353 d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                               .| ..++++++..+++.+|.|++|.|+++||...+
T Consensus        73 ---------~g-~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~  106 (108)
T 2kyc_A           73 ---------GA-RVLTASETKTFLAAADHDGDGKIGAEEFQEMV  106 (108)
T ss_dssp             ---------SC-CCCCTTTTHHHHTTTCCSSSSCCCSSHHHHHH
T ss_pred             ---------cc-CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence                     02 13677889999999999999999999998654

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=98.84  E-value=2.7e-09  Score=93.12  Aligned_cols=83  Identities=10%  Similarity=0.279  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      ...+.++.+|+.||.|++|+|+.+||+.++ .++   ....++.++..+|.|++|.|+|+||+.++...      .+.+.
T Consensus        47 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~~~------~~~i~  120 (150)
T 2jjz_A           47 EKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGK------RSAVL  120 (150)
T ss_dssp             HHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHHSS------SCCHH
T ss_pred             HHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHh------HHHHH
Confidence            467789999999999999999999999854 333   23458899999999999999999999998764      35699


Q ss_pred             HHhHHhcCCCCch
Q psy4132         313 FAFRIYDIDNDDD  325 (473)
Q Consensus       313 ~~F~~~D~d~dg~  325 (473)
                      .+|+.||.|++|.
T Consensus       121 ~aF~~~D~d~~G~  133 (150)
T 2jjz_A          121 KLVMMFEGKANES  133 (150)
T ss_dssp             HHHHC--------
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999999853

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.83  E-value=1.4e-09  Score=121.37  Aligned_cols=125  Identities=12%  Similarity=0.216  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchH
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV  237 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~  237 (473)
                      ....++.+|..||+       ..++...|..+|..++..  +...++..  +|.|++|.|+|+||+.++....   ....
T Consensus       723 ~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~--~~~~~~~~--~D~d~dG~I~~~EF~~~~~~~~---~~~~  795 (863)
T 1sjj_A          723 QMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEA--EFARIMSI--VDPNRMGVVTFQAFIDFMSRET---ADTD  795 (863)
T ss_dssp             HHHHHHHHHTTTCSSSSSEEESTTHHHHHHHHTCCCCTH--HHHHHHHH--HCTTSCSEEETTHHHHTHHHHS---TTCS
T ss_pred             HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCcCcHHHHHHHHHHHh---cCCC
Confidence            45678999999987       688888899999888766  55555543  7899999999999998876321   1122


Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCC-----CCCcccHHHHHHHHhh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-----RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d-----~dG~I~~~EF~~~l~~  300 (473)
                      ..+.+..+|+.| .|++|+|+.+||+.++.   ...++.++..+|.+     ++|.|+|+||+.+|..
T Consensus       796 ~~~~l~~aF~~~-~d~~G~Is~~El~~~l~---~~~~~~l~~~~d~~~~~~~~dg~I~~~eF~~~~~~  859 (863)
T 1sjj_A          796 TADQVMASFKIL-AGDKNYITVDELRRELP---PDQAEYCIARMAPYNGRDAVPGALDYMSFSTALYG  859 (863)
T ss_dssp             SSHHHHHHHHGG-GTSSSEEEHHHHHHHSC---HHHHHHHHHHSEECCSSCCCTTEEESHHHHHHHSC
T ss_pred             CHHHHHHHHHHH-hCCCCcCcHHHHHHHCC---HHHHHHHHHHcchhcCCCCCCCceeHHHHHHHHhc
Confidence            345788999999 89999999999998753   45688899999886     6899999999988753

>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A

Probab=98.82  E-value=2.1e-10  Score=96.77  Aligned_cols=101  Identities=12%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             HHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHH-----HHccccccccchHHHHHHHHHHHhhCCCCCCCccHH
Q psy4132         186 MVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCS-----IVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSID  260 (473)
Q Consensus       186 l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~-----~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~  260 (473)
                      |+++|.+++..  ++..++..  +    +|.|+|+||+.     ++....   ........++++|+.||    |+|+.+
T Consensus         2 lr~lG~~~t~~--ei~~~~~~--~----~g~i~f~EF~~~~~~~~~~~~~---~~~~~~~~l~~aF~~fD----G~I~~~   66 (123)
T 2kld_A            2 STAIGINDTYS--EVKSDLAQ--Q----KAEMELSDLIRKGYHKALVKLK---LKKNTVDDISESLRQGG----GKLNFD   66 (123)
T ss_dssp             ------------------------------------------------------------CCSCSSTTTT----TCEEHH
T ss_pred             hhhcCCCCCHH--HHHHHHHH--c----CCCccHHHHHhHhHHHHHHHhh---cChhHHHHHHHHHHHhC----CCCCHH
Confidence            68899999888  77776653  2    78999999999     665221   12344567889999999    999999


Q ss_pred             HHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         261 EFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       261 el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ||+.++ .++. ...++.+++.+|.|++|.|+|+||+.++...
T Consensus        67 El~~~l~~lG~t~~ei~~~~~~~D~d~dG~I~~~EF~~~~~~~  109 (123)
T 2kld_A           67 ELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDL  109 (123)
T ss_dssp             HHHHHTTTCCSSHHHHHHHHHHHSSSSCCEECSHHHHHCSCTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            999953 3443 3458999999999999999999999988655

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.79  E-value=2e-08  Score=110.25  Aligned_cols=139  Identities=10%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             HHHHHHHHHh--hCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCC-------CCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         239 IRRLGKRFRK--LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-------RNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       239 ~~~l~~~F~~--~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d-------~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ...++++|..  +|+|++|.|+.+++.+++... ...++.+++.+|.+       ++|.|+|+||..++..+..    .+
T Consensus       149 ~~~L~kaf~~~~~D~n~dGkIs~kel~~~l~~~-~~~v~~l~~~~d~~~~~~d~~~~g~i~feEF~~f~~~l~~----R~  223 (885)
T 3ohm_B          149 NTFLRKAYTKLKLQVNQDGRIPVKNILKMFSAD-KKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCL----RP  223 (885)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCEEHHHHHHTTGGG-HHHHHHHHHTTTCCCSTTCEECGGGCCHHHHHHHHHHHSC----CH
T ss_pred             HHHHHHHHHHhcCccCCCCccCHHHHHHHHhcC-HHHHHHHHHHhCCCccccccCCCCcCCHHHHHHHHHhcCC----HH
Confidence            3467788887  899999999999999976653 34678899999987       7899999999999987642    46


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC----CCC
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL----PDS  385 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~----~dg  385 (473)
                      .++.+|+.||.+++|.++.   ++|..+|...-.+.    .+.++       . ...++.+++.++++.++.+    ++|
T Consensus       224 EI~eiF~~ydsd~~g~mT~---~EL~~FL~~~Q~e~----~~~e~-------~-~~~~t~e~~~~iI~k~e~~~~~~~~g  288 (885)
T 3ohm_B          224 DIDKILLEIGAKGKPYLTL---EQLMDFINQKQRDP----RLNEV-------L-YPPLRPSQARLLIEKYEPNQQFLERD  288 (885)
T ss_dssp             HHHHHHHHTTCCSTTCEEH---HHHHHHHHHHSSCT----TSCTT-------T-SCCCCHHHHHHHHHHHCCCHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCccCH---HHHHHHHHHhcCcc----ccccc-------c-cccCCHHHHHHHHHHhcCChhhhccC
Confidence            7999999999888755555   34444444321110    00000       0 0027889999999999998    789


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|++++|...+.
T Consensus       289 ~LsldgF~~yL~  300 (885)
T 3ohm_B          289 QMSMEGFSRYLG  300 (885)
T ss_dssp             EECHHHHHHHHT
T ss_pred             ccchhhhhhhcc
Confidence            999999987765

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=98.79  E-value=3.8e-09  Score=91.85  Aligned_cols=83  Identities=13%  Similarity=0.292  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      .....++.+|+.||.|++|+|+.+||+.++ .++.   ...++.++..+|.|++|.|+|+||+.++...      .+.+.
T Consensus        45 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~~------~~~~~  118 (147)
T 1wy9_A           45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGK------RSAIL  118 (147)
T ss_dssp             HHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCSS------GGGGG
T ss_pred             HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh------HHHHH
Confidence            567789999999999999999999999853 3332   3358899999999999999999999998654      56788


Q ss_pred             HHhHHhcCCCCch
Q psy4132         313 FAFRIYDIDNDDD  325 (473)
Q Consensus       313 ~~F~~~D~d~dg~  325 (473)
                      .+|+.||.|++|.
T Consensus       119 ~aF~~~D~d~~g~  131 (147)
T 1wy9_A          119 RMILMYEEKNKEH  131 (147)
T ss_dssp             GGGGGCCCC----
T ss_pred             HHHHHHccCCCCC
Confidence            9999999999854

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=98.78  E-value=1.9e-08  Score=79.56  Aligned_cols=82  Identities=24%  Similarity=0.362  Sum_probs=64.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCC--cH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD--RE  308 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~--~~  308 (473)
                      .....+.++.+|+.+|.+++|+|+..||+.++ .++   ....+..++..+|.+++|.|+|+||+.++........  ..
T Consensus         4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~~~~~~~~~   83 (92)
T 2kn2_A            4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGW   83 (92)
T ss_dssp             CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHTTTCCCHHH
T ss_pred             CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhccCCCCCchH
Confidence            34567889999999999999999999999953 333   2345889999999999999999999999987754432  23


Q ss_pred             HHHHHHhH
Q psy4132         309 SKLKFAFR  316 (473)
Q Consensus       309 e~l~~~F~  316 (473)
                      +.++.+|+
T Consensus        84 ~~l~~aF~   91 (92)
T 2kn2_A           84 SRLRRKFS   91 (92)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            55666664

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=98.73  E-value=1.3e-09  Score=85.34  Aligned_cols=81  Identities=25%  Similarity=0.435  Sum_probs=62.8

Q ss_pred             CCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCC
Q psy4132         212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNG  287 (473)
Q Consensus       212 d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG  287 (473)
                      |++|.|+|+|+  ++..    .........++.+|+.+|.+++|+|+..||+.+. .++   ....++.++..+|.+++|
T Consensus         1 ~~~G~i~~~e~--~~~~----~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g   74 (87)
T 1s6j_A            1 HSSGHIDDDDK--HMAE----RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSG   74 (87)
T ss_dssp             CCSSSSSSHHH--HSSS----SSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSS
T ss_pred             CCCCccCccHH--HHHH----HCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence            56899999993  3331    1223345679999999999999999999999853 333   233588999999999999


Q ss_pred             cccHHHHHHHH
Q psy4132         288 EVDFKEFIQGV  298 (473)
Q Consensus       288 ~I~~~EF~~~l  298 (473)
                      .|+|+||+.++
T Consensus        75 ~i~~~eF~~~~   85 (87)
T 1s6j_A           75 TIDYGEFIAAT   85 (87)
T ss_dssp             EECHHHHTTCC
T ss_pred             cCcHHHHHHHH
Confidence            99999998643

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=98.71  E-value=1.1e-08  Score=82.77  Aligned_cols=67  Identities=16%  Similarity=0.294  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchh--c----cC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPE--L----QQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~--~----~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+.....++++|+.|| +|++ |+|+.+||+.++.  +    +.   ...++++++.+|.|+||.|+|+||+.++..+
T Consensus         5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~   82 (101)
T 3nso_A            5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            3556789999999997 8887 9999999999653  2    22   3358999999999999999999999988654

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=98.70  E-value=1.8e-08  Score=80.35  Aligned_cols=67  Identities=22%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchh--cc-------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPE--LQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~--~~-------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+...+.++++|+.|| +|++ |+|+.+||+.++.  ++       ....++++++.+|.|+||.|+|+||+.++..+
T Consensus         5 le~~~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~   82 (93)
T 4eto_A            5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   82 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence            4567789999999998 6874 8999999999643  32       23468999999999999999999999998754

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=98.69  E-value=1.9e-08  Score=81.96  Aligned_cols=68  Identities=22%  Similarity=0.343  Sum_probs=56.5

Q ss_pred             cchHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchh--cc-------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPE--LQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~--~~-------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.....++++|+.|| .|++ |+|+.+||+.++.  ++       ....++++++.+|.|+||.|+|+||+.+|...
T Consensus         7 ~le~~~~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~   85 (104)
T 3zwh_A            7 PLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSI   85 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            34567789999999997 7775 8999999999653  32       23468999999999999999999999998755

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=98.69  E-value=2.8e-08  Score=82.12  Aligned_cols=67  Identities=22%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             chHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh------cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE------LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~------~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....+.++++|+.|| .|++| +|+.+||+.++.      ++   ....++.+++.+|.|+||.|+|+||+.+|...
T Consensus        17 ~~~~~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~   94 (113)
T 2lnk_A           17 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   94 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence            3556789999999999 89997 999999999653      22   34468999999999999999999999988654

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.67  E-value=6.9e-08  Score=91.22  Aligned_cols=85  Identities=14%  Similarity=0.171  Sum_probs=65.8

Q ss_pred             cccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh--------ccC---------
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE--------LQQ---------  270 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~--------~~~---------  270 (473)
                      .+|.|++|.|+|.||+..+.-    .......++++.+|+.+| |++|+|+.+|+..+..        ++.         
T Consensus       140 ~FD~~~~G~I~f~ef~~aLs~----l~rG~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~~~~~~  214 (261)
T 1eg3_A          140 VYDTGRTGRIRVLSFKTGIIS----LCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNI  214 (261)
T ss_dssp             HHCTTCCSEEEHHHHHHHHHH----TSSSCHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCC
T ss_pred             HccCCCCceEeHHHHHHHHHH----HcCCCHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCCCCH
Confidence            479999999999999988772    123445679999999999 9999999999888421        111         


Q ss_pred             CHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       271 ~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .+.++.+|+.+|  ++|.|+.+||+..+.
T Consensus       215 e~~v~~~F~~~d--~dg~It~~EFl~~~~  241 (261)
T 1eg3_A          215 EPSVRSCFQFAN--NKPEIEAALFLDWMR  241 (261)
T ss_dssp             HHHHHHHHHHTT--TCSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCCcCCHHHHHHHHH
Confidence            123788888885  789999999998875

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=98.66  E-value=2.2e-08  Score=78.16  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhC
Q psy4132         284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARG  363 (473)
Q Consensus       284 d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g  363 (473)
                      |++|.|+|+|+  .+... ......+.++.+|+.||.|++|.+..   .++..++..                    . |
T Consensus         1 ~~~G~i~~~e~--~~~~~-l~~~~~~~~~~~F~~~D~d~~G~i~~---~el~~~l~~--------------------~-~   53 (87)
T 1s6j_A            1 HSSGHIDDDDK--HMAER-LSEEEIGGLKELFKMIDTDNSGTITF---DELKDGLKR--------------------V-G   53 (87)
T ss_dssp             CCSSSSSSHHH--HSSSS-SCSSSTTTTTTHHHHHCTTCSSCEEH---HHHHHHHHT--------------------T-T
T ss_pred             CCCCccCccHH--HHHHH-CCHHHHHHHHHHHHHHCCCCCCcCcH---HHHHHHHHH--------------------h-C
Confidence            56888999983  22222 12223456888999999998855555   333333332                    1 1


Q ss_pred             CCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         364 LELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       364 ~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                       ..++++++..+++.+|.+++|.|+++||+..+
T Consensus        54 -~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~   85 (87)
T 1s6j_A           54 -SELMESEIKDLMDAADIDKSGTIDYGEFIAAT   85 (87)
T ss_dssp             -SSCCHHHHHHHHHHHCTTCSSEECHHHHTTCC
T ss_pred             -CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence             14788999999999999999999999998765

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=98.66  E-value=5.5e-08  Score=75.76  Aligned_cols=67  Identities=24%  Similarity=0.339  Sum_probs=57.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.+.++.+|+.+|.|++|+|+.+||..+. .++  ....++.++..+|.|++|.|+|+||+.++...
T Consensus         6 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   75 (86)
T 2opo_A            6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN   75 (86)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred             CHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC
Confidence            45678899999999999999999999999853 333  22358899999999999999999999998765

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.64  E-value=4e-08  Score=78.14  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+..+++++|+.||+|++|+|+.+|++.++ ..+. ...+..++..+|.|++|.|+|+||+.+|...
T Consensus         4 s~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~   72 (92)
T 1fi6_A            4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV   72 (92)
T ss_dssp             CHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999999999964 3332 3458899999999999999999999988654

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.64  E-value=8.2e-09  Score=113.04  Aligned_cols=123  Identities=7%  Similarity=0.096  Sum_probs=77.3

Q ss_pred             HHHHHHHHHH--hhhh-------hhhHHHHHHHHhhhhhhhhhhhhccccc-----ccccCCCCCceeHHHHHHHHcccc
Q psy4132         165 TSSNINNAFK--DLNQ-------LMSMAKEMVEISKNISNKIINRQGEITE-----DDSNKDRDGKINFQEFCSIVGNTD  230 (473)
Q Consensus       165 ~~~~l~eaF~--~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~-----~~~D~d~dG~I~f~EF~~~~~~~~  230 (473)
                      ....++++|.  .||+       ..++...|++.     ..  ++..++..     ...|.+++|.|+|+||+.++....
T Consensus       144 ~~~~Lk~~F~~~~fD~d~dG~Is~~EL~~~l~~~-----~~--ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~  216 (799)
T 2zkm_X          144 RSTFLDKILVKLKMQLNSEGKIPVKNFFQMFPAD-----RK--RVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC  216 (799)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSCEEHHHHHHHSCSC-----HH--HHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHhHHhccCCCCCCeECHHHHHHHHhhh-----HH--HHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHcc
Confidence            4567999999  7887       34444444331     11  33333322     123568899999999999987321


Q ss_pred             ccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-cC------------CHHHHHHHHHhcCC----CCCcccHH
Q psy4132         231 IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-QQ------------NPLVQRVIDIFDED----RNGEVDFK  292 (473)
Q Consensus       231 ~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-~~------------~~~~~~l~~~~D~d----~dG~I~~~  292 (473)
                             ..++++++|+.||.+++|+|+.+||+.++. . +.            ...+++|++.+|.|    ++|.|+|+
T Consensus       217 -------~r~el~~aF~~fD~d~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~d~d~~~~~dg~is~e  289 (799)
T 2zkm_X          217 -------PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPE  289 (799)
T ss_dssp             -------CCHHHHTTCC--------CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHH
T ss_pred             -------CHHHHHHHHHHhccCCCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHhhcccccccCCccchh
Confidence                   236789999999999999999999999643 2 22            23478999999998    89999999


Q ss_pred             HHHHHHhhc
Q psy4132         293 EFIQGVSQF  301 (473)
Q Consensus       293 EF~~~l~~~  301 (473)
                      +|+.+|...
T Consensus       290 eF~~~L~S~  298 (799)
T 2zkm_X          290 GMVWFLCGP  298 (799)
T ss_dssp             HHHHHHHST
T ss_pred             hhhhcccCc
Confidence            999999643

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=98.63  E-value=3.8e-08  Score=81.50  Aligned_cols=84  Identities=17%  Similarity=0.308  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHhhCC-CCCC-CccHHHHhcchh--cc--------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcc
Q psy4132         235 MVVDIRRLGKRFRKLDL-DNSG-ALSIDEFMSLPE--LQ--------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS  302 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~-d~~G-~Is~~el~~l~~--~~--------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~  302 (473)
                      .......++.+|+.||. |++| +|+.+||+.++.  ++        ....++.++..+|.|++|.|+|+||+.++....
T Consensus         7 l~~~~~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~~   86 (113)
T 1xk4_C            7 LERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMARLT   86 (113)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHHH
Confidence            34567889999999995 9999 999999999643  33        123588999999999999999999999997652


Q ss_pred             cCCCcHHHHHHHhHHhcCCCCch
Q psy4132         303 VKGDRESKLKFAFRIYDIDNDDD  325 (473)
Q Consensus       303 ~~~~~~e~l~~~F~~~D~d~dg~  325 (473)
                            ......|...| +++|.
T Consensus        87 ------~~~~~~f~~~~-~~~g~  102 (113)
T 1xk4_C           87 ------WASHEKMHEGD-EGPGH  102 (113)
T ss_dssp             ------HHHHC------------
T ss_pred             ------HHHHHHHhhCC-CCCcc
Confidence                  34566677777 77753

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=98.63  E-value=4.4e-08  Score=79.25  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHhhCCCC---CCCccHHHHhcchhc-c----C----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDN---SGALSIDEFMSLPEL-Q----Q----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~---~G~Is~~el~~l~~~-~----~----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....+.++++|+.||.++   +|+|+.+||+.++.. +    .    ...++.+++.+|.|+||.|+|+||+.+|..+
T Consensus         6 le~~i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~   84 (100)
T 3nxa_A            6 LEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGI   84 (100)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            4567789999999999964   799999999996432 1    1    2358999999999999999999999999765

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=98.61  E-value=4.8e-08  Score=78.18  Aligned_cols=67  Identities=22%  Similarity=0.353  Sum_probs=54.7

Q ss_pred             chHHHHHHHHHHHhhC-CCC-CCCccHHHHhcchhc------c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDN-SGALSIDEFMSLPEL------Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~-~G~Is~~el~~l~~~------~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+...++.+|+.|| .|+ +|+|+.+||+.++..      +   ....++.+++.+|.|++|.|+|+||+.++...
T Consensus         4 l~~~~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~   81 (95)
T 1j55_A            4 LETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAI   81 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence            3456789999999999 788 589999999996432      2   23358999999999999999999999988654

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=98.60  E-value=4.2e-08  Score=78.51  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.+.++++|+.||+|++|+|+.+|++.++ ..+. ...++.+++.+|.|++|.|+|+||+.+|...
T Consensus         5 s~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~   73 (95)
T 1c07_A            5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLI   73 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence            34677899999999999999999999999964 3332 3358899999999999999999999988654

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=98.59  E-value=6.5e-08  Score=73.53  Aligned_cols=66  Identities=17%  Similarity=0.394  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+...++.+|+.+|.+++|+|+.+||..+. .++..   ..++.++..+|.+++|.|+|+||+.++...
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~   72 (77)
T 2joj_A            3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEK   72 (77)
T ss_dssp             HHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            4567889999999999999999999999953 33332   347899999999999999999999988654

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=98.57  E-value=5.8e-08  Score=77.15  Aligned_cols=67  Identities=19%  Similarity=0.337  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchhc------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPEL------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~~------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++.+|+.|| +|++| +|+.+||+.++..      .....++.+++.+|.|++|.|+|+||+.++...
T Consensus         5 l~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~   79 (92)
T 2kax_A            5 LEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTML   79 (92)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            3456788999999999 99999 9999999996431      223468999999999999999999999988654

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=98.57  E-value=6.5e-08  Score=78.09  Aligned_cols=67  Identities=25%  Similarity=0.404  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh------cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE------LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~------~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++.+|+.|| .|++| +|+.+||+.++.      ++   ....++.++..+|.|++|.|+|+||+.++...
T Consensus         5 l~~~~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~   82 (99)
T 2y5i_A            5 LEGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAAL   82 (99)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            3456788999999997 89998 999999999643      22   23358999999999999999999999988654

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=98.56  E-value=4.3e-08  Score=78.48  Aligned_cols=67  Identities=19%  Similarity=0.335  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh------cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE------LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~------~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++++|+.|| +|++| +|+.+||+.++.      ++   ....++.+++.+|.|++|.|+|+||+.++...
T Consensus         7 ~e~~~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~~   84 (95)
T 2wcb_A            7 LEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIA   84 (95)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            3456788999999999 89998 999999999643      22   23458999999999999999999999988643

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=98.56  E-value=6.6e-08  Score=79.05  Aligned_cols=67  Identities=18%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchh--ccC----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPE--LQQ----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~--~~~----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....+.++++|+.|| .|++ |+|+.+||+.++.  ++.    ...++.++..+|.|++|.|+|+||+.++...
T Consensus        17 le~~~~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~   91 (106)
T 2h2k_A           17 LEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL   91 (106)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence            4556789999999999 7986 7999999999753  331    2468999999999999999999999988654

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=98.55  E-value=5.2e-08  Score=80.24  Aligned_cols=66  Identities=18%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.++++++|+.||+|++|+|+.+|++.++ ..+ ....++.+++.+|.|++|.|+|+||+.+|...
T Consensus        18 ~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~   85 (110)
T 1iq3_A           18 EEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI   85 (110)
T ss_dssp             SSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            4567889999999999999999999999953 332 23468999999999999999999999988654

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.54  E-value=5.4e-08  Score=78.57  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+.+.++++|+.||+|++|+|+.+|++.++ ..+. ...+..+++.+|.|++|.|+|+||+.+|...
T Consensus         8 ~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~   74 (99)
T 1qjt_A            8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV   74 (99)
T ss_dssp             TTCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence            345679999999999999999999999964 3332 3458999999999999999999999998654

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=98.53  E-value=1e-07  Score=75.69  Aligned_cols=66  Identities=26%  Similarity=0.472  Sum_probs=54.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCC---CccHHHHhcchh------ccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSG---ALSIDEFMSLPE------LQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G---~Is~~el~~l~~------~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+.....++++|+.|| +++|   +|+.+||+.++.      ++.   ...++.+++.+|.|++|.|+|+||+.++..+
T Consensus         4 le~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l   81 (92)
T 3rm1_A            4 LEKAVVALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMI   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            3456788999999999 6666   999999999643      332   2358999999999999999999999998765

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=98.53  E-value=1.3e-07  Score=74.73  Aligned_cols=67  Identities=31%  Similarity=0.460  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++.+|+.+|.|++|+|+.+||..++ .++. ...++.++..+|.|++|.|+|+||+.++..+
T Consensus        22 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~~   90 (91)
T 2pmy_A           22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLGS   90 (91)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHHHT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHHH
Confidence            35667889999999999999999999999853 3332 3358899999999999999999999988643

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=98.52  E-value=1.7e-07  Score=76.58  Aligned_cols=66  Identities=23%  Similarity=0.242  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+..+++++|+.||+ ++|+|+.+|++.++ ..+. ...+..++..+|.|++|.|+|+||+.+|...
T Consensus        10 s~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~   77 (106)
T 1eh2_A           10 KPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV   77 (106)
T ss_dssp             CHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            35677889999999999 99999999999964 3332 3358899999999999999999999988654

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=98.50  E-value=1.3e-07  Score=77.97  Aligned_cols=67  Identities=16%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.+.++.+|+.||.|++|+|+.+||+.++. .. ....+..++..+|.|++|.|+|+||+.++...
T Consensus         9 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~   77 (111)
T 2kgr_A            9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLI   77 (111)
T ss_dssp             CHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence            355778899999999999999999999999654 11 23358899999999999999999999988654

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=98.50  E-value=9.2e-08  Score=70.39  Aligned_cols=60  Identities=27%  Similarity=0.493  Sum_probs=50.6

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .++.+|+.+|.+++|+|+.+||..+. .++   ....+..++..+|.|++|.|+|+||+.++..
T Consensus         2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~   65 (67)
T 1tiz_A            2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK   65 (67)
T ss_dssp             THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            47889999999999999999999853 333   2235789999999999999999999998864

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=98.49  E-value=2e-07  Score=73.27  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++.+|+.+|.+++|+|+.+||..+. .++.   ...++.++..+|.+++|.|+|+||+.++...
T Consensus        15 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~   85 (90)
T 1avs_A           15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ   85 (90)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence            45677889999999999999999999999953 3332   2358899999999999999999999988654

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A

Probab=98.47  E-value=1.4e-07  Score=76.27  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=54.9

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-----------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-----------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-----------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.+.++++|+.||.+ +|+|+.+||+.++..           .....++.+++.+|.|++|.|+|+||+.++...
T Consensus         5 l~~~~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~   81 (100)
T 1psr_A            5 AERSIIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI   81 (100)
T ss_dssp             HHHHHHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            345678999999999976 799999999996431           223468899999999999999999999998653

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=98.47  E-value=2e-07  Score=75.32  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||+|++|.++..|+..++..+                        |. .++++++.++++.+|.|+||.|
T Consensus        35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~l------------------------g~-~~~~~ei~~l~~~~D~d~dG~I   89 (100)
T 2lv7_A           35 LEEIREAFKVFDRDGNGFISKQELGTAMRSL------------------------GY-MPNEVELEVIIQRLDMDGDGQV   89 (100)
T ss_dssp             HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH------------------------TC-CCCTTTHHHHHHHHCSSCSSSB
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh------------------------CC-CCCHHHHHHHHHHHCCCCCCeE
Confidence            4578999999999999666664333333222                        21 4788889999999999999999


Q ss_pred             eHHhhhccc
Q psy4132         388 YLKTYSSGV  396 (473)
Q Consensus       388 s~~EF~~~~  396 (473)
                      +|+||+..+
T Consensus        90 ~~~EF~~~m   98 (100)
T 2lv7_A           90 DFEEFVTLL   98 (100)
T ss_dssp             CHHHHHHHT
T ss_pred             eHHHHHHHh
Confidence            999998643

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=98.46  E-value=3.7e-07  Score=72.66  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             HHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHH
Q psy4132         294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLL  373 (473)
Q Consensus       294 F~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~  373 (473)
                      |+.++..........+.++.+|+.||.|++|.+...   ++..++.                    .. | ..++++++.
T Consensus        14 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~---El~~~l~--------------------~~-g-~~~~~~e~~   68 (94)
T 2kz2_A           14 ENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAA---ELRHVMT--------------------NL-G-EKLTDEEVD   68 (94)
T ss_dssp             CTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHH---HHHHHHH--------------------HH-T-CCCCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHH---HHHHHHH--------------------Hh-C-CCCCHHHHH
Confidence            444455555566778899999999999999655553   3333332                    22 2 147889999


Q ss_pred             HHHHHhccCCCCCeeHHhhhccc
Q psy4132         374 NSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       374 ~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .+++.+|.|++|.|+++||...+
T Consensus        69 ~l~~~~D~d~dG~I~~~EF~~~~   91 (94)
T 2kz2_A           69 EMIREADIDGDGQVNYEEFVQMM   91 (94)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEeHHHHHHHH
Confidence            99999999999999999998654

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=98.45  E-value=9.3e-08  Score=71.31  Aligned_cols=62  Identities=26%  Similarity=0.465  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ..+.++.+|+.+|.+++|+|+.+||..+. .++   ....++.++..+|.+++|.|+|+||+.++.
T Consensus         4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~   69 (71)
T 2b1u_A            4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLA   69 (71)
T ss_dssp             THHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHT
T ss_pred             cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            46789999999999999999999999854 333   233578999999999999999999998874

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=98.44  E-value=3.2e-07  Score=73.04  Aligned_cols=64  Identities=27%  Similarity=0.403  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+.++.+|+.+|.|++|+|+.+||+.++ .++   ....++.+++.+|.|++|.|+|+||+.++.
T Consensus        25 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~   92 (94)
T 2kz2_A           25 TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT   92 (94)
T ss_dssp             CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            3456789999999999999999999999953 333   234588999999999999999999998875

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=98.44  E-value=1e-07  Score=70.03  Aligned_cols=59  Identities=27%  Similarity=0.467  Sum_probs=48.8

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ++.+|+.+|.|++|+|+.+||..+.. .+   ....++.++..+|.|++|.|+|+||+.++..
T Consensus         2 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~   64 (66)
T 3li6_A            2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS   64 (66)
T ss_dssp             CCHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence            35789999999999999999998533 22   2234788999999999999999999998864

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=98.43  E-value=3.1e-07  Score=72.85  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHhhCC-CCCC-CccHHHHhcch-h-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDL-DNSG-ALSIDEFMSLP-E-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~-d~~G-~Is~~el~~l~-~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......++.+|+.||. |++| +|+..||+.++ . ++   ....++.+++.+|.|++|.|+|+||+.++...
T Consensus         6 ~~~~~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~   78 (93)
T 1xk4_A            6 EKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKM   78 (93)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            4566789999999999 9999 99999999865 2 32   12347899999999999999999999988654

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=98.43  E-value=2.6e-07  Score=69.83  Aligned_cols=64  Identities=19%  Similarity=0.349  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhh-CCCCC-CCccHHHHhcch-hcc-----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKL-DLDNS-GALSIDEFMSLP-ELQ-----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~-D~d~~-G~Is~~el~~l~-~~~-----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.++.+|+.+ |.+++ |+|+..||..+. ..+     ....++.++..+|.+++|.|+|+||+.++...
T Consensus         3 ~~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~   74 (76)
T 1qx2_A            3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            356789999999 99999 999999999853 222     33468999999999999999999999988654

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=98.43  E-value=4.3e-07  Score=69.18  Aligned_cols=62  Identities=27%  Similarity=0.470  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ++++.+|+.+|.+++|+|+.+||..+. .++  ....++.++..+|.|++|.|+|+||+.++...
T Consensus         3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~   67 (78)
T 1k9u_A            3 DDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNAN   67 (78)
T ss_dssp             CHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHC
Confidence            468899999999999999999999853 333  23358899999999999999999999988754

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=98.43  E-value=2.8e-07  Score=74.63  Aligned_cols=80  Identities=11%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             eeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHH
Q psy4132         217 INFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFK  292 (473)
Q Consensus       217 I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~  292 (473)
                      ++++++...+..     ........++.+|+.||.+++|+|+..||+.++ .++   ....++.++..+|.|++|.|+|+
T Consensus         6 ~~~~~~~~~l~~-----~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~   80 (105)
T 1wlz_A            6 TADRDILARLHK-----AVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP   80 (105)
T ss_dssp             TCCHHHHHHHHH-----HHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHH
T ss_pred             hhHHHHHHHHHH-----HHHchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHH
Confidence            556777776652     223456789999999999999999999999953 333   23358899999999999999999


Q ss_pred             HHHHHHhhc
Q psy4132         293 EFIQGVSQF  301 (473)
Q Consensus       293 EF~~~l~~~  301 (473)
                      ||+.++...
T Consensus        81 eF~~~~~~~   89 (105)
T 1wlz_A           81 DFLSRFSSE   89 (105)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHhcc
Confidence            999988654

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=98.42  E-value=3.2e-07  Score=71.35  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHH---HHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~---~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+...++.+|+.||.+++|+|+..||..++ .++.   ...   +..++..+|.+++|.|+| ||+.++...
T Consensus         9 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~~   81 (86)
T 1j7q_A            9 GPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSKW   81 (86)
T ss_dssp             SSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHHH
Confidence            45678889999999999999999999999853 3332   335   788999999999999999 999988754

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=98.42  E-value=1.1e-07  Score=72.40  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhhCC-CCCC-CccHHHHhcchh--cc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDL-DNSG-ALSIDEFMSLPE--LQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~-d~~G-~Is~~el~~l~~--~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .....++.+|+.+|. +++| +|+..||+.+..  ++    ....++.++..+|.|++|.|+|+||+.++..+
T Consensus         4 ~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   76 (78)
T 1cb1_A            4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             CCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Confidence            356789999999999 9999 999999999643  33    34458899999999999999999999988654

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=98.41  E-value=2.3e-07  Score=73.27  Aligned_cols=66  Identities=27%  Similarity=0.423  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh------ccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE------LQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~------~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......++.+|+.+| .+++| +|+..||+.++.      ++.   ...++.++..+|.|++|.|+|+||+.++...
T Consensus         5 ~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~   81 (93)
T 1k2h_A            5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            456778999999999 79999 999999998643      332   2358899999999999999999999988654

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=98.41  E-value=1.5e-07  Score=72.35  Aligned_cols=65  Identities=25%  Similarity=0.407  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ....+.++ +|+.+|.+++|+|+.+||..++ .++    ....+..++..+|.+++|.|+|+||+.++...
T Consensus         5 ~~~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   74 (81)
T 1c7v_A            5 DDEEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKS   74 (81)
T ss_dssp             --CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHCC
T ss_pred             ccHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh
Confidence            34567899 9999999999999999999853 333    23358899999999999999999999988654

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=98.41  E-value=3.3e-07  Score=78.35  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.++++++|+.|| |++|+|+.+|++.++ ..+. ...+..|+..+|.|++|.|+|+||+.+|...
T Consensus        47 ~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li  113 (139)
T 2jq6_A           47 GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLI  113 (139)
T ss_dssp             GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            356789999999999 999999999999964 3332 3458999999999999999999999988654

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.40  E-value=2.5e-07  Score=100.93  Aligned_cols=129  Identities=6%  Similarity=0.014  Sum_probs=81.3

Q ss_pred             hCCCCCCCccHHHHhcchhccCC--HHHHHHHHHh-------cCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhc
Q psy4132         249 LDLDNSGALSIDEFMSLPELQQN--PLVQRVIDIF-------DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYD  319 (473)
Q Consensus       249 ~D~d~~G~Is~~el~~l~~~~~~--~~~~~l~~~~-------D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D  319 (473)
                      ||+|++|.|+.+|+.+++.....  ..+..+++.+       |.+++|.|+|+||..++..+.    ..++++.+|+.||
T Consensus       164 fd~n~dG~Is~kEl~~~l~~~~~~~~el~~~~~~~~~~~~k~D~~~~g~L~FeEF~~f~~~L~----~R~EI~eiF~~y~  239 (816)
T 3qr0_A          164 TVEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALL----ERSEIEGIFKELS  239 (816)
T ss_dssp             HTSCCSSEEEHHHHHHHHCSCHHHHHHHHHHHHHHTSCCSTTCEEETTTCCHHHHHHHHHHHC----CCTHHHHHHHHHT
T ss_pred             ccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHhcccccccccCCCCcCCHHHHHHHHHhcC----CHHHHHHHHHHHc
Confidence            45555555555555554322111  1255666666       567889999999999998763    3457999999999


Q ss_pred             CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhcc--C----CCCCeeHHhhh
Q psy4132         320 IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDK--L----PDSPIYLKTYS  393 (473)
Q Consensus       320 ~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~--~----~dg~Is~~EF~  393 (473)
                      .|++|.++. ++..++.-...   +.    ...+.       .- ..++.+++.++++.++.  +    ++|.+++++|.
T Consensus       240 ~dg~~~mT~-eL~~FL~~~Q~---E~----~~~~~-------~~-~~~t~e~~~~iI~kye~~~~~~~~~~g~LsldgF~  303 (816)
T 3qr0_A          240 KNKGNITTV-MFRDFLNDMQR---HP----SLHKT-------LF-PLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLL  303 (816)
T ss_dssp             TTSSSEEHH-HHHHHHHHTSS---CT----TSCTT-------TS-CCCCHHHHHHHHHHHHHHHHGGGCBTTEECHHHHH
T ss_pred             cCCCCcccH-HHHHHHHHhCC---cc----ccccc-------cc-cccCHHHHHHHHHHhccccchhhhccCCccHHHHH
Confidence            887754444 44444433321   00    00000       00 02688889999988876  4    68999999998


Q ss_pred             ccce
Q psy4132         394 SGVK  397 (473)
Q Consensus       394 ~~~~  397 (473)
                      ..+.
T Consensus       304 ~yL~  307 (816)
T 3qr0_A          304 YFLM  307 (816)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7665

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A

Probab=98.39  E-value=3.5e-07  Score=73.22  Aligned_cols=66  Identities=23%  Similarity=0.402  Sum_probs=54.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh------cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE------LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~------~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......++++|+.||. ++|+|+.+||+.++.      ++   ....++.++..+|.|++|.|+|+||+.++...
T Consensus         4 l~~~~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~   78 (96)
T 1a4p_A            4 MEHAMETMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   78 (96)
T ss_dssp             HHHHHHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            34567889999999994 567999999999643      22   34568999999999999999999999988654

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=98.38  E-value=3.4e-07  Score=73.99  Aligned_cols=69  Identities=19%  Similarity=0.159  Sum_probs=48.7

Q ss_pred             HHHHHHhHHhc-CCCC-chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDND-DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~d-g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|+.|| +|++ |.++.   .||..+|...+..   .             .| +.++++++.++++.+|.|+||.
T Consensus        10 ~~l~~aF~~fd~~dg~~G~Is~---~EL~~~l~~~l~~---~-------------lg-~~~~~~ev~~~i~~~D~dgDG~   69 (101)
T 3nso_A           10 AAIVCTFQEYAGRCGDKYKLCQ---AELKELLQKELAT---W-------------TP-TEFRECDYNKFMSVLDTNKDCE   69 (101)
T ss_dssp             HHHHHHHHHHHTTSSCTTEECH---HHHHHHHHHHTTT---C-------------CC-CTTCHHHHHHHHHHHHHCCCSC
T ss_pred             HHHHHHHHHHhhcCCCCCEECH---HHHHHHHHHHhhh---h-------------cC-CCCCHHHHHHHHHHhCCCCCCC
Confidence            56888999997 7877 44444   4444444321110   0             01 2478999999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        70 Idf~EF~~~~~   80 (101)
T 3nso_A           70 VDFVEYVRSLA   80 (101)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987654

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=98.38  E-value=6.5e-07  Score=71.59  Aligned_cols=66  Identities=26%  Similarity=0.434  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh--c-------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE--L-------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~--~-------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......+..+|+.+| .+++| +|+.+||+.+..  +       .....++.++..+|.|++|.|+|+||+.++...
T Consensus         9 ~~~~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~   85 (99)
T 1qls_A            9 ERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGL   85 (99)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            345678999999998 99999 999999998643  1       234568999999999999999999999988654

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=98.38  E-value=1.9e-07  Score=72.10  Aligned_cols=64  Identities=22%  Similarity=0.420  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc-----CCHHHHH----HHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-----QNPLVQR----VIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-----~~~~~~~----l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.++.+|+.+|.|++|+|+.+||..+. ..+     ....++.    ++..+|.|++|.|+|+||+..+..+
T Consensus         5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~   78 (83)
T 1yx7_A            5 VKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAEL   78 (83)
T ss_dssp             SCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHH
Confidence            45678999999999999999999999853 233     2234666    9999999999999999999776543

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=98.37  E-value=3.6e-07  Score=71.54  Aligned_cols=66  Identities=23%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHhhC-CCCCC-CccHHHHhcchh----cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNSG-ALSIDEFMSLPE----LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~G-~Is~~el~~l~~----~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......++.+|+.+| ++++| +|+..||+.+..    ++   ....++.++..+|.|++|.|+|+||+.++...
T Consensus         6 ~~~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   80 (90)
T 1k8u_A            6 DQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL   80 (90)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            445678999999999 69999 999999998643    33   34468999999999999999999999988654

>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A

Probab=98.35  E-value=3.1e-08  Score=83.38  Aligned_cols=89  Identities=12%  Similarity=0.151  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHH-----HHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCc
Q psy4132         274 VQRVIDIFDEDRNGEVDFKEFIQ-----GVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGT  348 (473)
Q Consensus       274 ~~~l~~~~D~d~dG~I~~~EF~~-----~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~  348 (473)
                      ++.++..+    +|.|+|+||+.     ++..........+.++.+|+.||    |.+..   +++..+|..        
T Consensus        14 i~~~~~~~----~g~i~f~EF~~~~~~~~~~~~~~~~~~~~~l~~aF~~fD----G~I~~---~El~~~l~~--------   74 (123)
T 2kld_A           14 VKSDLAQQ----KAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGG----GKLNF---DELRQDLKG--------   74 (123)
T ss_dssp             -----------------------------------------CCSCSSTTTT----TCEEH---HHHHHHTTT--------
T ss_pred             HHHHHHHc----CCCccHHHHHhHhHHHHHHHhhcChhHHHHHHHHHHHhC----CCCCH---HHHHHHHHH--------
Confidence            45555544    89999999998     66654333444566788899997    44444   444444432        


Q ss_pred             cchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         349 MLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       349 i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                   .|  . +++++.++++.+|.|+||.|+++||...+.
T Consensus        75 -------------lG--~-t~~ei~~~~~~~D~d~dG~I~~~EF~~~~~  107 (123)
T 2kld_A           75 -------------KG--H-TDAEIEAIFTKYDQDGDQELTEHEHQQMRD  107 (123)
T ss_dssp             -------------CC--S-SHHHHHHHHHHHSSSSCCEECSHHHHHCSC
T ss_pred             -------------hC--C-CHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence                         23  2 788899999999999999999999987764

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=98.35  E-value=5.4e-07  Score=73.37  Aligned_cols=66  Identities=11%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......++.+|+.+|.|++|+|+..||..+. ..+   ....+..++..+|.+++|.|+|+||+.++...
T Consensus        28 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~~~   97 (107)
T 2d58_A           28 PSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGK   97 (107)
T ss_dssp             HHHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHc
Confidence            4667889999999999999999999999853 333   23358899999999999999999999988654

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=98.29  E-value=1.3e-06  Score=69.39  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             HHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      +.++.+|+.|| +|+++|+++.  .||..++...+..   .+             + ...+++++.++++.+|.|+||.|
T Consensus        10 ~~l~~~F~~fd~~dg~~G~Is~--~EL~~~l~~~lg~---~l-------------~-~~~~~~ev~~~i~~~D~d~DG~I   70 (93)
T 4eto_A           10 DVMVSTFHKYSGKEGDKFKLNK--SELKELLTRELPS---FL-------------G-KRTDEAAFQKLMSNLDSNRDNEV   70 (93)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCH--HHHHHHHHHHCGG---GC-----------------CCHHHHHHHHHHHCTTSSSSB
T ss_pred             HHHHHHHHHHcccCCCCCeECH--HHHHHHHHHHhhh---hc-------------c-CCCCHHHHHHHHHHHCCCCCCCC
Confidence            67889999998 5665334333  4444444421110   00             0 13688999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||+..+.
T Consensus        71 df~EF~~~~~   80 (93)
T 4eto_A           71 DFQEYCVFLS   80 (93)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987654

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=98.28  E-value=3.4e-07  Score=76.49  Aligned_cols=58  Identities=17%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhhhh------hhhHHHHHHH-----HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         166 SSNINNAFKDLNQ------LMSMAKEMVE-----ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       166 ~~~l~eaF~~lD~------~~e~~~~l~~-----lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ...|+.+|..||.      ..|+...|++     ++..++..  ++..++..  +|.|+||.|+|+||+.+|+
T Consensus        14 ie~l~~~F~~yd~ddG~Is~~EL~~~l~~~~~~~l~~~~~~~--~v~~~i~~--~D~d~DG~IdF~EF~~lm~   82 (121)
T 4drw_A           14 METMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPL--AVDKIMKD--LDQCRDGKVGFQSFFSLIA   82 (121)
T ss_dssp             HHHHHHTTGGGSCTTCSCCHHHHHHHTTTSCHHHHTTSSCTT--HHHHHHHH--HCTTCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEcHHHHHHHHHHHhhhhcccCCCHH--HHHHHHHH--HcCCCCCcCcHHHHHHHHH
Confidence            3467777777766      4555555543     44444444  44444443  6777777777777777766

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=98.27  E-value=1.8e-06  Score=70.14  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=48.0

Q ss_pred             HHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      +.++.+|+.|| +|+++|++..  .||..+|...+...                .+ ..++++++.++++.+|.|+||.|
T Consensus        13 ~~l~~aF~~fD~~dgd~G~Is~--~EL~~~l~~~lg~~----------------l~-~~~~~~ev~~~i~~~D~dgDG~I   73 (104)
T 3zwh_A           13 DVMVSTFHKYSGKEGDKFKLNK--SELKELLTRELPSW----------------LG-KRTDEAAFQKLMSNLDSNRDNEV   73 (104)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCH--HHHHHHHHHHCGGG----------------SC-SSCCHHHHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHHHHhccCCCCCeECH--HHHHHHHHHHcchh----------------cc-CCCCHHHHHHHHHHHcCCCCCCC
Confidence            57889999998 6665334433  44444444211100                01 13688999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||+..+.
T Consensus        74 df~EF~~~m~   83 (104)
T 3zwh_A           74 DFQEYCVFLS   83 (104)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987664

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=98.27  E-value=6.8e-07  Score=72.37  Aligned_cols=60  Identities=18%  Similarity=0.321  Sum_probs=49.3

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcchh-----c-cCC--------------HHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLPE-----L-QQN--------------PLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~~-----~-~~~--------------~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .++.+|+.||.|++|+|+.+||..+..     . +..              ..+..++..+|.|++|.|+|+||+.++..
T Consensus        21 ~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  100 (103)
T 1snl_A           21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR  100 (103)
T ss_dssp             CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHC
T ss_pred             CHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHhc
Confidence            477899999999999999999998643     1 221              12788999999999999999999988753

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=98.26  E-value=1e-06  Score=64.63  Aligned_cols=63  Identities=14%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.+|.|++|.+...   ++..++.                    .. | ..++++++..+++.+|.|++|.|++
T Consensus         2 ~l~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-~-~~~~~~~~~~~~~~~D~~~dg~i~~   56 (67)
T 1tiz_A            2 SAKRVFEKFDKNKDGKLSLD---EFREVAL--------------------AF-S-PYFTQEDIVKFFEEIDVDGNGELNA   56 (67)
T ss_dssp             THHHHHHHHCTTSSSCEEHH---HHHHHHH--------------------HT-C-TTSCHHHHHHHHHHHCCSSSSEECH
T ss_pred             HHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHHCCCCCCcCcH
Confidence            46789999999999655553   3333332                    21 1 1478899999999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...+.
T Consensus        57 ~ef~~~~~   64 (67)
T 1tiz_A           57 DEFTSCIE   64 (67)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=98.24  E-value=1.2e-06  Score=65.20  Aligned_cols=66  Identities=24%  Similarity=0.301  Sum_probs=50.6

Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      ...+.++.+|+.+|.|++|.+..   .++..++..                    . | ..++++++..+++.+|.+++|
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~---~el~~~l~~--------------------~-~-~~~~~~~~~~~~~~~d~~~~g   57 (71)
T 2b1u_A            3 AGLEDLQVAFRAFDQDGDGHITV---DELRRAMAG--------------------L-G-QPLPQEELDAMIREADVDQDG   57 (71)
T ss_dssp             TTHHHHHHHHTTSCCSSSSEEEH---HHHHHHGGG--------------------T-T-CSSCHHHHHHHHHHCCSSSSS
T ss_pred             ccHHHHHHHHHHHCCCCCCcCcH---HHHHHHHHH--------------------h-C-CCCCHHHHHHHHHHhCCCCCC
Confidence            35678999999999999965555   344444432                    1 2 137889999999999999999


Q ss_pred             CeeHHhhhccc
Q psy4132         386 PIYLKTYSSGV  396 (473)
Q Consensus       386 ~Is~~EF~~~~  396 (473)
                      .|+++||...+
T Consensus        58 ~i~~~eF~~~~   68 (71)
T 2b1u_A           58 RVNYEEFARML   68 (71)
T ss_dssp             EEETTHHHHHH
T ss_pred             cCcHHHHHHHH
Confidence            99999998765

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.21  E-value=1.6e-06  Score=68.75  Aligned_cols=63  Identities=11%  Similarity=0.031  Sum_probs=47.3

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||+|++|.+...   ++..++.                    +. |   ++.+++.++++.+|.|+||.|
T Consensus         8 ~~~~~~~F~~~D~d~dG~I~~~---el~~~l~--------------------~~-g---~~~~~~~~i~~~~D~d~dG~i   60 (92)
T 1fi6_A            8 RQYYVNQFKTIQPDLNGFIPGS---AAKEFFT--------------------KS-K---LPILELSHIWELSDFDKDGAL   60 (92)
T ss_dssp             HHHHHHHHTTTCCSTTCEEEHH---HHHHHHH--------------------HH-S---SCHHHHHHHHHHHCTTCSSEE
T ss_pred             HHHHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hc-C---CCHHHHHHHHHHHCCCCCCCC
Confidence            3567889999999998555553   3333332                    21 3   678889999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||..++.
T Consensus        61 ~~~EF~~~~~   70 (92)
T 1fi6_A           61 TLDEFCAAFH   70 (92)
T ss_dssp             EHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999987664

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=98.20  E-value=2.9e-06  Score=68.52  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=59.6

Q ss_pred             CcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCC
Q psy4132         287 GEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLEL  366 (473)
Q Consensus       287 G~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~  366 (473)
                      ..++++++...+.....  ...+.++.+|+.||.|++|.+...   ++..+|.                    .. | ..
T Consensus         4 ~~~~~~~~~~~l~~~~~--~~~~~l~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g-~~   56 (105)
T 1wlz_A            4 MATADRDILARLHKAVT--SHYHAITQEFENFDTMKTNTISRE---EFRAICN--------------------RR-V-QI   56 (105)
T ss_dssp             CTTCCHHHHHHHHHHHH--HTHHHHHHHHHHHCTTCSSCBCHH---HHHHHHH--------------------HH-T-CC
T ss_pred             cchhHHHHHHHHHHHHH--chHHHHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hh-C-CC
Confidence            34556677666655432  235778999999999998555553   3333332                    22 2 14


Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhcccee
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      ++.+++..++..+|.|++|.|+++||...+.-
T Consensus        57 ~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~~   88 (105)
T 1wlz_A           57 LTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSS   88 (105)
T ss_dssp             CCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHcCCCCCCCCcHHHHHHHHhc
Confidence            78899999999999999999999999987763

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=98.19  E-value=2.6e-06  Score=67.89  Aligned_cols=64  Identities=16%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.++.+|+.||+|++|.+..   +|+..++.                    +. |   ++.+++.++++.+|.|+||.
T Consensus         8 ~~~~~~~~F~~~D~d~dG~I~~---~el~~~l~--------------------~~-g---~~~~~~~~i~~~~D~d~dG~   60 (95)
T 1c07_A            8 EKAKYDEIFLKTDKDMDGFVSG---LEVREIFL--------------------KT-G---LPSTLLAHIWSLCDTKDCGK   60 (95)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECH---HHHHHHHH--------------------TT-T---CCHHHHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHhCCCCCCcEeH---HHHHHHHH--------------------Hc-C---CCHHHHHHHHHHHCCCCCCc
Confidence            3467889999999999955555   33333333                    21 2   67888999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||..++.
T Consensus        61 i~~~EF~~~~~   71 (95)
T 1c07_A           61 LSKDQFALAFH   71 (95)
T ss_dssp             EETTTHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999987654

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=98.19  E-value=6e-07  Score=65.79  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|+.+|.|++|.++..|+..++..+..                         .++++++..+|+.+|.|++|.|+++|
T Consensus         3 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~-------------------------~~~~~~~~~~~~~~D~~~~g~i~~~e   57 (66)
T 3li6_A            3 EALFKEIDVNGDGAVSYEEVKAFVSKKRA-------------------------IKNEQLLQLIFKSIDADGNGEIDQNE   57 (66)
T ss_dssp             CHHHHHHCTTCSSSCCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHCTTCSSSCCHHH
T ss_pred             HHHHHHHCCCCCCcccHHHHHHHHHHccC-------------------------CCcHHHHHHHHHHHCCCCCCCCCHHH
Confidence            56899999999976666444333333221                         25567899999999999999999999


Q ss_pred             hhccceee
Q psy4132         392 YSSGVKVL  399 (473)
Q Consensus       392 F~~~~~vl  399 (473)
                      |...+..+
T Consensus        58 f~~~~~~~   65 (66)
T 3li6_A           58 FAKFYGSI   65 (66)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHhc
Confidence            98776543

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=98.19  E-value=1.4e-06  Score=75.72  Aligned_cols=49  Identities=12%  Similarity=0.099  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCC
Q psy4132         274 VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND  323 (473)
Q Consensus       274 ~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~d  323 (473)
                      +..+|..+|.|++|.|+.+||..++..+ .....++.+..+|+.+|.|++
T Consensus        52 l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~e~~~l~~~~D~d~d  100 (150)
T 2jjz_A           52 FKEKYMEFDLNNEGEIDLMSLKRMMEKL-GVPKTHLEMKKMISEVTGGVS  100 (150)
T ss_dssp             HHHHHTTSCCCTTSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCCCcCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHCCCCC
Confidence            3445555555555555555555555443 122233444445555554444

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.18  E-value=1.9e-06  Score=69.31  Aligned_cols=64  Identities=13%  Similarity=0.047  Sum_probs=49.1

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.++.+|+.||+|++|.++.   +|+..++.                    +. |   ++.+++.++++.+|.|+||.
T Consensus         9 ~~~~~~~~F~~~D~d~dG~Is~---~el~~~l~--------------------~~-~---l~~~~l~~i~~~~D~d~dG~   61 (99)
T 1qjt_A            9 GNPVYEKYYRQVEAGNTGRVLA---LDAAAFLK--------------------KS-G---LPDLILGKIWDLADTDGKGV   61 (99)
T ss_dssp             TCTHHHHHHHHHCCTTSSCCCS---HHHHHHHH--------------------TS-S---SCHHHHHHHHHHHCCSSSSS
T ss_pred             hHHHHHHHHHHHCCCCCCcCCH---HHHHHHHH--------------------Hc-C---CCHHHHHHHHHHHCCCCCCc
Confidence            3467899999999999955544   33333332                    21 2   67889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||..++.
T Consensus        62 i~~~EF~~~~~   72 (99)
T 1qjt_A           62 LSKQEFFVALR   72 (99)
T ss_dssp             CCSHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999987765

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=98.17  E-value=3e-06  Score=64.34  Aligned_cols=64  Identities=20%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ++.++.+|+.||.|++|.+...   ++..++.                    .. |  .++++++..++..+|.|++|.|
T Consensus         2 ~~~l~~~F~~~D~~~~G~i~~~---el~~~l~--------------------~~-g--~~~~~~~~~~~~~~D~~~dg~i   55 (78)
T 1k9u_A            2 ADDMERIFKRFDTNGDGKISLS---ELTDALR--------------------TL-G--STSADEVQRMMAEIDTDGDGFI   55 (78)
T ss_dssp             -CHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HH-H--TCCHHHHHHHHHHHCTTCSSSE
T ss_pred             hHHHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hh-C--CCCHHHHHHHHHHhCCCCCCeE
Confidence            3568899999999999655553   3333332                    22 2  2788999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        56 ~~~ef~~~~~   65 (78)
T 1k9u_A           56 DFNEFISFCN   65 (78)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987664

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.17  E-value=1.1e-05  Score=88.71  Aligned_cols=137  Identities=11%  Similarity=0.225  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHh--hhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccc-----cccCCCC
Q psy4132         149 TGIVGIERNIVEKQKETSSNINNAFKD--LNQ-------LMSMAKEMVEISKNISNKIINRQGEITED-----DSNKDRD  214 (473)
Q Consensus       149 ~gi~gi~r~~~~~~~~~~~~l~eaF~~--lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~-----~~D~d~d  214 (473)
                      .|+..|+............-++++|..  +|+       ..++...|..     ...  ++..++..-     ..|..++
T Consensus       132 ~gL~~L~~~~~~~~~~~~~~L~kaf~~~~~D~n~dGkIs~kel~~~l~~-----~~~--~v~~l~~~~d~~~~~~d~~~~  204 (885)
T 3ohm_B          132 EELFKLAMNILAQNASRNTFLRKAYTKLKLQVNQDGRIPVKNILKMFSA-----DKK--RVETALESCGLKFNRSESIRP  204 (885)
T ss_dssp             HHHHHHHHCHHHHTCCHHHHHHHHHHHHHHSCCTTSCEEHHHHHHTTGG-----GHH--HHHHHHHTTTCCCSTTCEECG
T ss_pred             HHHHHHHhhhhhcccCHHHHHHHHHHHhcCccCCCCccCHHHHHHHHhc-----CHH--HHHHHHHHhCCCccccccCCC
Confidence            344445544432222335678888887  666       2233332221     111  233333221     1233377


Q ss_pred             CceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-ccCC-------------HHHHHHHHH
Q psy4132         215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQN-------------PLVQRVIDI  280 (473)
Q Consensus       215 G~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~~~-------------~~~~~l~~~  280 (473)
                      |.|+|+||..++....       ...+++.+|+.+|.+++|+|+.+||..++. ....             ..+..|++.
T Consensus       205 g~i~feEF~~f~~~l~-------~R~EI~eiF~~ydsd~~g~mT~~EL~~FL~~~Q~e~~~~e~~~~~~t~e~~~~iI~k  277 (885)
T 3ohm_B          205 DEFSLEIFERFLNKLC-------LRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEK  277 (885)
T ss_dssp             GGCCHHHHHHHHHHHS-------CCHHHHHHHHHTTCCSTTCEEHHHHHHHHHHHSSCTTSCTTTSCCCCHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHhcC-------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhcCcccccccccccCCHHHHHHHHHH
Confidence            8899999999887311       235789999999999999999999988532 2111             347888999


Q ss_pred             hcCC----CCCcccHHHHHHHHh
Q psy4132         281 FDED----RNGEVDFKEFIQGVS  299 (473)
Q Consensus       281 ~D~d----~dG~I~~~EF~~~l~  299 (473)
                      ++.+    ++|.|++++|..+|.
T Consensus       278 ~e~~~~~~~~g~LsldgF~~yL~  300 (885)
T 3ohm_B          278 YEPNQQFLERDQMSMEGFSRYLG  300 (885)
T ss_dssp             HCCCHHHHHTTEECHHHHHHHHT
T ss_pred             hcCChhhhccCccchhhhhhhcc
Confidence            9888    788999999988873

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=98.17  E-value=2e-06  Score=70.89  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             HHHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .+.++.+|+.|| +|++||++..  .||..+|...+..                ..| ..++++++.++++.+|.|+||.
T Consensus        21 ~~~l~~aF~~fD~~dgdGG~Is~--~EL~~~l~~~l~~----------------~lg-~~~t~~ev~~li~~~D~dgdG~   81 (113)
T 2lnk_A           21 LDVMVSTFHKYSGKEGDKFKLNK--SELKELLTRELPS----------------FLG-KRTDEAAFQKLMSNLDSNRDNE   81 (113)
T ss_dssp             HHHHHHHHHHTTTTTSCTTCBCH--HHHHHHHHHHCGG----------------GGT-TCCCTTHHHHHHHHHCSSSSSC
T ss_pred             HHHHHHHHHHHcccCCCCCEECH--HHHHHHHHHHcch----------------hcC-CCCCHHHHHHHHHHhCCCCCCc
Confidence            467889999999 7888633333  4444444321110                011 1367888999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        82 Idf~EF~~~m~   92 (113)
T 2lnk_A           82 VDFQEYCVFLS   92 (113)
T ss_dssp             BCHHHHHHHHH
T ss_pred             EeHHHHHHHHH
Confidence            99999987653

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=98.16  E-value=2.9e-06  Score=64.16  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.+...   ++..++.                    .. |. .++++++..++..+|.+++|.|
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g~-~~~~~~~~~~~~~~d~~~~g~i   60 (77)
T 2joj_A            6 KQEIKEAFDLFDTNKTGSIDYH---ELKVAMR--------------------AL-GF-DVKKPEILELMNEYDREGNGYI   60 (77)
T ss_dssp             HHHHHHHHHHHCCSSSSEEEHH---HHHHHHH--------------------HH-TC-CCHHHHHHHHHHHHCCSSSSEE
T ss_pred             HHHHHHHHHHhCCCCCCCCcHH---HHHHHHH--------------------Hh-CC-CCCHHHHHHHHHHHCCCCCCcC
Confidence            4678899999999999666553   3333332                    21 21 3778889999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        61 ~~~eF~~~~~   70 (77)
T 2joj_A           61 GFDDFLDIMT   70 (77)
T ss_dssp             EHHHHHHHHT
T ss_pred             cHHHHHHHHH
Confidence            9999987653

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=98.16  E-value=4.4e-06  Score=65.59  Aligned_cols=67  Identities=22%  Similarity=0.283  Sum_probs=50.8

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.++.+|+.||.|++|.+...   ++..++.                    .. |. .++++++..++..+|.|++|.
T Consensus         7 ~~~~l~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g~-~~~~~~~~~l~~~~d~~~dg~   61 (92)
T 2kn2_A            7 AEEELKEAFKVFDKDQNGYISAS---ELRHVMI--------------------NL-GE-KLTDEEVEQMIKEADLDGDGQ   61 (92)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-TC-CCCHHHHHHHHHHHCSSCCSS
T ss_pred             HHHHHHHHHHHHCCCCCCeEcHH---HHHHHHH--------------------Hh-CC-CCCHHHHHHHHHHhCCCCCCc
Confidence            45678999999999999655553   3333333                    21 21 478999999999999999999


Q ss_pred             eeHHhhhcccee
Q psy4132         387 IYLKTYSSGVKV  398 (473)
Q Consensus       387 Is~~EF~~~~~v  398 (473)
                      |+++||...+..
T Consensus        62 i~~~eF~~~~~~   73 (92)
T 2kn2_A           62 VNYEEFVKMMMT   73 (92)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EeHHHHHHHHHh
Confidence            999999877653

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A

Probab=98.15  E-value=3.8e-06  Score=69.70  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ....+..++.++|+.+|+ ++|+|+.+|++.++ ..+. ...+.+|++..|.|++|.|+|+||+.+|...
T Consensus        27 it~ee~~~y~~iF~~lD~-~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li   95 (121)
T 3fia_A           27 ITVEERAKHDQQFHSLKP-ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI   95 (121)
T ss_dssp             CCHHHHHHHHHHHHHTCC-BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            346778899999999999 89999999999964 3332 3458999999999999999999999988654

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=98.14  E-value=5.7e-06  Score=64.74  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.+...   ++..++.                    .. |. .++++++..++..+|.|++|.|
T Consensus        19 ~~~l~~~F~~~D~d~~G~i~~~---el~~~l~--------------------~~-g~-~~~~~~~~~l~~~~D~~~dg~i   73 (90)
T 1avs_A           19 IAEFKAAFDMFDADGGGDISTK---ELGTVMR--------------------ML-GQ-NPTKEELDAIIEEVDEDGSGTI   73 (90)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-TC-CCCHHHHHHHHHHHCTTCCSSE
T ss_pred             HHHHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hh-CC-CCCHHHHHHHHHHhCCCCCCeE
Confidence            4678899999999999655553   3333332                    22 21 4788999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        74 ~~~eF~~~~~   83 (90)
T 1avs_A           74 DFEEFLVMMV   83 (90)
T ss_dssp             EHHHHHHHHH
T ss_pred             eHHHHHHHHH
Confidence            9999987654

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=98.13  E-value=2.1e-06  Score=70.00  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             HHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      +.++.+|+.|| +|++||++..  .||..+|...                    .|....+++++.++++.+|.|+||.|
T Consensus        22 ~~l~~aF~~fD~~dg~~G~Is~--~EL~~~l~~~--------------------lg~~~~~~~ev~~li~~~D~d~dG~I   79 (106)
T 2h2k_A           22 ETVVTTFFTFARQEGRKDSLSV--NEFKELVTQQ--------------------LPHLLKDVGSLDEKMKSLDVNQDSEL   79 (106)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECH--HHHHHHHHHH--------------------CTTTTTTCCCHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHHHcccCCCCCEECH--HHHHHHHHHH--------------------cCcCCCCHHHHHHHHHHHCCCCCCCC
Confidence            57899999999 7887433333  4444444321                    11001124678999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||+..+.
T Consensus        80 df~EF~~~~~   89 (106)
T 2h2k_A           80 KFNEYWRLIG   89 (106)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987654

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=98.12  E-value=3.2e-06  Score=66.57  Aligned_cols=63  Identities=19%  Similarity=0.248  Sum_probs=45.5

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.+...   |+..++.                    .. |   ++++++..+|..+|.|+||.|
T Consensus        26 ~~~l~~~F~~~D~d~~G~I~~~---El~~~l~--------------------~~-g---~~~~~~~~~~~~~D~d~dg~I   78 (91)
T 2pmy_A           26 LARLRSVFAACDANRSGRLERE---EFRALCT--------------------EL-R---VRPADAEAVFQRLDADRDGAI   78 (91)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHH---HHHHHHH--------------------HT-T---CCHHHHHHHHHHHCTTCSSEE
T ss_pred             HHHHHHHHHHHCCCCCCCCcHH---HHHHHHH--------------------Hc-C---cCHHHHHHHHHHhCCCCCCCE
Confidence            3567788888888888544442   3333332                    21 2   577889999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        79 ~~~EF~~~~~   88 (91)
T 2pmy_A           79 TFQEFARGFL   88 (91)
T ss_dssp             CHHHHTHHHH
T ss_pred             eHHHHHHHHH
Confidence            9999987653

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=98.12  E-value=6.4e-06  Score=66.37  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=46.9

Q ss_pred             HHHHHHhHHhcCCC---CchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         309 SKLKFAFRIYDIDN---DDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       309 e~l~~~F~~~D~d~---dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      +.++.+|+.||.++   +|.++.   .||..+|......   .++              +..+++++.++++.+|.|+||
T Consensus        11 ~~l~~~F~~fD~~~g~~~G~Is~---~EL~~~l~~~~~~---~l~--------------~~~~~~ev~~~i~~~D~d~DG   70 (100)
T 3nxa_A           11 IVLVENFYKYVSKYSLVKNKISK---SSFREMLQKELNH---MLS--------------DTGNRKAADKLIQNLDANHDG   70 (100)
T ss_dssp             HHHHHHHHHTSCTTCSCTTCBCH---HHHHHHHHHHSTT---TTC--------------SSHHHHHHHHHHHHSCCCSSC
T ss_pred             HHHHHHHHHHcCcCCCCCCeEcH---HHHHHHHHHHccc---ccc--------------ccccHHHHHHHHHHhCCCCCC
Confidence            56899999999864   444444   3444444321110   000              113467899999999999999


Q ss_pred             CeeHHhhhcccee
Q psy4132         386 PIYLKTYSSGVKV  398 (473)
Q Consensus       386 ~Is~~EF~~~~~v  398 (473)
                      .|+|+||+..+..
T Consensus        71 ~Idf~EF~~~m~~   83 (100)
T 3nxa_A           71 RISFDEYWTLIGG   83 (100)
T ss_dssp             CBCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999877653

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=98.11  E-value=4.5e-06  Score=67.13  Aligned_cols=71  Identities=20%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             HHHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .+.++.+|+.|| +|++||++..  .||..+|...+..                ..| ..++++++.++++.+|.|+||.
T Consensus         9 ~~~l~~~F~~fDd~dg~gG~I~~--~El~~~l~~~~~~----------------~lg-~~~~~~~v~~l~~~~D~d~dG~   69 (99)
T 2y5i_A            9 MDALITVFHNYSGSEGDKYKLSK--GELKELLNAELTD----------------FLM-SQKDPMLVEKIMNDLDSNKDNE   69 (99)
T ss_dssp             HHHHHHHHHHHHTSSSSTTEECH--HHHHHHHHHHSGG----------------GGT-TSCCHHHHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHhccCCCcCcCCH--HHHHHHHHHHhhh----------------hcc-ccccHHHHHHHHHHHCCCCCCc
Confidence            356889999997 7888634333  4444444321110                011 1378899999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        70 I~f~EF~~~~~   80 (99)
T 2y5i_A           70 VDFNEFVVLVA   80 (99)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987664

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=98.09  E-value=2.3e-06  Score=65.48  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=50.4

Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      ....+.++ +|+.||.|++|.+..   .++..++..                    . |...++++++..++..+|.+++
T Consensus         5 ~~~~~~l~-~F~~~D~d~~G~i~~---~el~~~l~~--------------------~-g~~~~~~~~~~~~~~~~D~~~d   59 (81)
T 1c7v_A            5 DDEEEILR-AFKVFDANGDGVIDF---DEFKFIMQK--------------------V-GEEPLTDAEVEEAMKEADEDGN   59 (81)
T ss_dssp             --CHHHHH-HHHHHSCSGGGEECH---HHHHHHSST--------------------T-TTCCCCHHHHHHHHHHHCSSGG
T ss_pred             ccHHHHHH-HHHHHCCCCCCcCCH---HHHHHHHHH--------------------h-CCCCCCHHHHHHHHHHhCCCCC
Confidence            34567889 999999999965555   444444432                    1 1014788999999999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||...+.
T Consensus        60 g~i~~~eF~~~~~   72 (81)
T 1c7v_A           60 GVIDIPEFMDLIK   72 (81)
T ss_dssp             GSEEHHHHHHHHH
T ss_pred             CcCcHHHHHHHHH
Confidence            9999999987664

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=98.09  E-value=3.5e-06  Score=67.18  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             HHHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .+.++.+|+.|| +|++||++..  +||..+|...+.         .       ..| ..++++++.++++.+|.|+||.
T Consensus        11 ~~~l~~~F~~fD~~dg~gg~I~~--~El~~~l~~~~~---------~-------~lg-~~~~~~~v~~~~~~~D~d~dG~   71 (95)
T 2wcb_A           11 LEGIVNIFHQYSVRKGHFDTLSK--GELKQLLTKELA---------N-------TIK-NIKDKAVIDEIFQGLDANQDEQ   71 (95)
T ss_dssp             HHHHHHHHHHHHTSSSSTTEEEH--HHHHHHHHHHTH---------H-------HHH-HCCCHHHHHHHHTTSSSSTTSE
T ss_pred             HHHHHHHHHHHhccCCCCCccCH--HHHHHHHHHHhh---------h-------hcc-ccccHHHHHHHHHHHcCCCCCc
Confidence            356889999999 7888634433  455544442110         0       001 1378889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        72 I~f~EF~~~~~   82 (95)
T 2wcb_A           72 VDFQEFISLVA   82 (95)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987653

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=98.09  E-value=6.2e-06  Score=65.21  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             HHHHHHhHHhcCCCCc--hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYDIDNDD--DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg--~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|+.|| +++|  |++..  .||..+|...+..                ..| ..++++++.++++.+|.|+||.
T Consensus         9 ~~l~~~F~~~D-~~dG~~g~Is~--~EL~~~l~~~~~~----------------~lg-~~~~~~~v~~~~~~~D~d~dG~   68 (92)
T 3rm1_A            9 VALIDVFHQYS-GREGDKHKLKK--SELKELINNELSH----------------FLE-EIKEQEVVDKVMETLDSNGDGE   68 (92)
T ss_dssp             HHHHHHHHHHH-TSSSSTTSBCH--HHHHHHHHHHCTT----------------TSC-CCCSHHHHHHHHHHHCTTSSSS
T ss_pred             HHHHHHHHHHc-cCCCCcCeECH--HHHHHHHHHHhhh----------------hcc-CcccHHHHHHHHHHHcCCCCCC
Confidence            56889999999 6664  23332  4444444431110                012 2478999999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||+..+.
T Consensus        69 I~f~EF~~~~~   79 (92)
T 3rm1_A           69 CDFQEFMAFVA   79 (92)
T ss_dssp             BCHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987664

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=98.08  E-value=5.9e-06  Score=63.98  Aligned_cols=64  Identities=19%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.+..   .++..++.                    .. |  .++++++..+++.+|.|++|.|
T Consensus        10 ~~~l~~~F~~~D~d~~G~i~~---~el~~~l~--------------------~~-g--~~~~~~~~~~~~~~D~~~dg~i   63 (86)
T 2opo_A           10 IADRERIFKRFDTNGDGKISS---SELGDALK--------------------TL-G--SVTPDEVRRMMAEIDTDGDGFI   63 (86)
T ss_dssp             HHHHHHHHHHHCTTCSSEEEH---HHHHHHHH--------------------TT-T--TCCHHHHHHHHHHHCTTCSSEE
T ss_pred             HHHHHHHHHHHCCCCCCCcCH---HHHHHHHH--------------------Hc-C--CCCHHHHHHHHHHhCCCCCCcC
Confidence            467899999999999955555   34443333                    21 2  3788899999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        64 ~~~eF~~~~~   73 (86)
T 2opo_A           64 SFDEFTDFAR   73 (86)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987664

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=98.07  E-value=4.7e-06  Score=66.42  Aligned_cols=71  Identities=13%  Similarity=0.055  Sum_probs=45.7

Q ss_pred             HHHHHHHhHHhc-CCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      .+.++.+|+.|| +|+++|++..  .||..+|...+...                .| ..++++++.++++.+|.|+||.
T Consensus         8 ~~~l~~~F~~fD~~dgd~G~I~~--~El~~~l~~~~~~~----------------lg-~~~~~~~v~~l~~~~D~d~dG~   68 (95)
T 1j55_A            8 MGMIIDVFSRYSGSEGSTQTLTK--GELKVLMEKELPGF----------------LQ-SGKDKDAVDKLLKDLDANGDAQ   68 (95)
T ss_dssp             HHHHHHHHHHHTTSSSCTTEECH--HHHHHHHHHHSTTC----------------C-------CHHHHHHHHHCSSSSSS
T ss_pred             HHHHHHHHHHHhccCCCCCcCCH--HHHHHHHHHHhHhh----------------cc-cccCHHHHHHHHHHhCCCCCCc
Confidence            357889999999 6875333333  45555544321100                01 1367778999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        69 I~f~EF~~~~~   79 (95)
T 1j55_A           69 VDFSEFIVFVA   79 (95)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999987653

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=98.06  E-value=2.8e-06  Score=64.01  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             cHHHHHHHhHHh-cCCCC-chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCC--CHHHHHHHHHHhccC
Q psy4132         307 RESKLKFAFRIY-DIDND-DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELL--SPEDLLNSCLALDKL  382 (473)
Q Consensus       307 ~~e~l~~~F~~~-D~d~d-g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~l--s~~ei~~~~~~~D~~  382 (473)
                      ..+.++.+|+.| |.|++ |.+...++..++..+..                         .+  +++++..++..+|.|
T Consensus         3 ~~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~-------------------------~~~~~~~~~~~l~~~~D~~   57 (76)
T 1qx2_A            3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGP-------------------------SLLKGMSTLDEMIEEVDKN   57 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGG-------------------------GSCTTSCSHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCC-------------------------CcCCCHHHHHHHHHHhCCC
Confidence            456788889998 88888 77766444333333221                         24  666789999999999


Q ss_pred             CCCCeeHHhhhccce
Q psy4132         383 PDSPIYLKTYSSGVK  397 (473)
Q Consensus       383 ~dg~Is~~EF~~~~~  397 (473)
                      ++|.|+++||...+.
T Consensus        58 ~~g~i~~~eF~~~~~   72 (76)
T 1qx2_A           58 GDGEVSFEEFLVMMK   72 (76)
T ss_dssp             CSSEECHHHHHHHHH
T ss_pred             CCCcEeHHHHHHHHH
Confidence            999999999987653

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=98.04  E-value=3.3e-06  Score=64.90  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHH----HHHHhcc
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLN----SCLALDK  381 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~----~~~~~D~  381 (473)
                      ...+.++.+|+.||.|++|.+...++..++..+..                       ...++++++..    +++.+|.
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~D~   60 (83)
T 1yx7_A            4 KVKAELEAAFKKLDANGDGYVTALELQTFMVTLDA-----------------------YKALSKDKVKEASAKLIKMADK   60 (83)
T ss_dssp             CSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTT-----------------------CTTTTTTTTHHHHHHHHTTTCS
T ss_pred             cHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcc-----------------------ccCCCHHHHHHHHHHHHHHhCC
Confidence            34568899999999999966666433333322210                       01256666777    9999999


Q ss_pred             CCCCCeeHHhhhccc
Q psy4132         382 LPDSPIYLKTYSSGV  396 (473)
Q Consensus       382 ~~dg~Is~~EF~~~~  396 (473)
                      |+||.|+++||....
T Consensus        61 ~~dg~I~~~eF~~~~   75 (83)
T 1yx7_A           61 NSDGKISKEEFLNAN   75 (83)
T ss_dssp             SSCSCCSHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhh
Confidence            999999999998543

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=98.02  E-value=8.3e-06  Score=67.01  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=48.6

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||+|++|.+..   .|+..++.                       + ..++.+++..+++.+|.|+||.|
T Consensus        13 ~~~l~~~F~~~D~d~dG~I~~---~El~~~l~-----------------------~-~~~~~~~~~~i~~~~D~d~dG~I   65 (111)
T 2kgr_A           13 RLKYRQLFNSHDKTMSGHLTG---PQARTILM-----------------------Q-SSLPQAQLASIWNLSDIDQDGKL   65 (111)
T ss_dssp             HHHHHHHHHTTSCSSCCEEEH---HHHHHHHH-----------------------T-TCCCHHHHHHHHHHHCSSCCSEE
T ss_pred             HHHHHHHHHHHCCCCCCcCcH---HHHHHHHH-----------------------h-CCCCHHHHHHHHHHHCCCCCCCC
Confidence            467889999999999965555   33333333                       1 13788899999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||+..+.
T Consensus        66 ~~~EF~~~~~   75 (111)
T 2kgr_A           66 TAEEFILAMH   75 (111)
T ss_dssp             EHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987654

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=98.01  E-value=5e-06  Score=65.78  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             HHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|+.|| +|++| .+..   +|+..+|...                    .+...+++.++..+++.+|.|+||.
T Consensus        10 ~~l~~~F~~~D~~d~dG~~I~~---~El~~~l~~~--------------------~~~~~~~~~~i~~~~~~~D~d~dG~   66 (92)
T 2kax_A           10 TTMVTTFHKYSGREGSKLTLSR---KELKELIKKE--------------------LCLGEMKESSIDDLMKSLDKNSDQE   66 (92)
T ss_dssp             HHHHHHHHHHHTTSSCSSEEEH---HHHHHHHHHH--------------------SCCTTTCCTTHHHHHHHHTTTCSSE
T ss_pred             HHHHHHHHHHHhhCCCCCeeCH---HHHHHHHHHH--------------------cCCCCCCHHHHHHHHHHhCCCCCCc
Confidence            56889999999 99996 4554   3444444321                    1100156677899999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||+..+.
T Consensus        67 I~f~EF~~~~~   77 (92)
T 2kax_A           67 IDFKEYSVFLT   77 (92)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987664

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=97.99  E-value=2.1e-06  Score=74.33  Aligned_cols=75  Identities=12%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCc
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~  288 (473)
                      +|.|++|.|+.+||..++...    ........+..+|..+|.+++|.|+.+||..+.... ...+...|+.+|.+++|.
T Consensus        57 ~D~d~dG~I~~~El~~~l~~~----g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~~-~~~~~~aF~~~D~d~~g~  131 (147)
T 1wy9_A           57 FDLNGNGDIDIMSLKRMLEKL----GVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGK-RSAILRMILMYEEKNKEH  131 (147)
T ss_dssp             SCCCTTSSEEHHHHHHHHHHT----TCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCSS-GGGGGGGGGGCCCC----
T ss_pred             HCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh-HHHHHHHHHHHccCCCCC
Confidence            566777777777777666521    111234456666777777777777777776643322 334556667777776665

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=97.99  E-value=1.2e-05  Score=63.28  Aligned_cols=70  Identities=16%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             HHHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         308 ESKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       308 ~e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      .+.++.+|+.|| +|++| .+...   ++..++...+.                ...| ..++++++..++..+|.|+||
T Consensus         8 ~~~l~~~F~~~D~~d~~G~~I~~~---el~~~l~~~~~----------------~~~g-~~~~~~~~~~~~~~~D~d~dg   67 (93)
T 1k2h_A            8 METLINVFHAHSGKEGDKYKLSKK---ELKDLLQTELS----------------SFLD-VQKDADAVDKIMKELDENGDG   67 (93)
T ss_dssp             HHHHHHHHHHHHTTSSCCSSCCHH---HHHHHHHHHTH----------------HHHH-CCCCHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHcccCCCcCccCHH---HHHHHHHHHHH----------------HHhC-CCCCHHHHHHHHHHhCCCCCC
Confidence            357889999999 79996 55553   33333332100                0012 147899999999999999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||...+.
T Consensus        68 ~i~~~eF~~~~~   79 (93)
T 1k2h_A           68 EVDFQEFVVLVA   79 (93)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             cCcHHHHHHHHH
Confidence            999999987664

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=97.98  E-value=8.1e-06  Score=69.68  Aligned_cols=63  Identities=10%  Similarity=0.005  Sum_probs=48.0

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+.++.+|+.|| |++|.++..   ++..+|.                    + .|   ++.+++.++++..|.|+||.
T Consensus        49 e~~~l~~~F~~fD-d~dG~Is~~---El~~~l~--------------------~-~g---l~~~el~~I~~~~D~d~dG~  100 (139)
T 2jq6_A           49 DKPTYDEIFYTLS-PVNGKITGA---NAKKEMV--------------------K-SK---LPNTVLGKIWKLADVDKDGL  100 (139)
T ss_dssp             THHHHHHHHHHSC-CSSSEEEHH---HHHHHHH--------------------H-TT---CCHHHHHHHHHHHCSSCCSE
T ss_pred             HHHHHHHHHHHhC-CCCCeECHH---HHHHHHH--------------------H-hC---cCHHHHHHHHHHhCCCCCCc
Confidence            3577899999999 888555553   3333332                    2 22   78889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||..++.
T Consensus       101 Ld~~EF~~am~  111 (139)
T 2jq6_A          101 LDDEEFALANH  111 (139)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987654

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=97.96  E-value=3.7e-06  Score=69.05  Aligned_cols=65  Identities=14%  Similarity=0.047  Sum_probs=49.3

Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCC
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDS  385 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg  385 (473)
                      ...+.++.+|+.||+|++|.+..   +++..++..                     .|   ++.+++.++++.+|.|+||
T Consensus        19 ~~~~~~~~~F~~~D~d~dG~Is~---~el~~~l~~---------------------~g---l~~~el~~i~~~~D~d~dG   71 (110)
T 1iq3_A           19 EQREYYVNQFRSLQPDPSSFISG---SVAKNFFTK---------------------SK---LSIPELSYIWELSDADCDG   71 (110)
T ss_dssp             SSHHHHHHHHHHHCCSSSSEEEH---HHHHHHCCS---------------------SS---CSSCCHHHHHHHHCSSSCS
T ss_pred             HHHHHHHHHHHHHCCCCCCeEcH---HHHHHHHHH---------------------cC---CCHHHHHHHHHHHcCCCCC
Confidence            34577899999999999965555   444444432                     12   5566789999999999999


Q ss_pred             CeeHHhhhccce
Q psy4132         386 PIYLKTYSSGVK  397 (473)
Q Consensus       386 ~Is~~EF~~~~~  397 (473)
                      .|+++||..++.
T Consensus        72 ~I~~~EF~~~m~   83 (110)
T 1iq3_A           72 ALTLPEFCAAFH   83 (110)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             cCcHHHHHHHHH
Confidence            999999987654

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=97.95  E-value=1.5e-05  Score=61.68  Aligned_cols=65  Identities=8%  Similarity=0.067  Sum_probs=48.2

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH---HHHHHHHhccCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED---LLNSCLALDKLP  383 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e---i~~~~~~~D~~~  383 (473)
                      ..+.++.+|..||.|++|.+...   ++..+|.                    .. |. .+++++   +..++..+|.++
T Consensus        12 ~~~~l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g~-~~~~~~~~~~~~~~~~~d~~~   66 (86)
T 1j7q_A           12 EKDECMKIFDIFDRNAENIAPVS---DTMDMLT--------------------KL-GQ-TYTKRETEAIMKEARGPKGDK   66 (86)
T ss_dssp             HHHHHHHHHHHHSTTTTSCBCHH---HHHHHHH--------------------HT-SC-CCSHHHHHHHHHHHHCSSCSS
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHH---HHHHHHH--------------------HH-cC-CCCHHHHHHHHHHHHHhCCCC
Confidence            35678999999999999655553   3333333                    21 21 478888   999999999999


Q ss_pred             CCCeeHHhhhccce
Q psy4132         384 DSPIYLKTYSSGVK  397 (473)
Q Consensus       384 dg~Is~~EF~~~~~  397 (473)
                      +|.|++ ||...+.
T Consensus        67 ~g~i~~-eF~~~~~   79 (86)
T 1j7q_A           67 KNIGPE-EWLTLCS   79 (86)
T ss_dssp             CCBCTT-HHHHHHH
T ss_pred             CCcCCH-HHHHHHH
Confidence            999999 9987653

>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3

Probab=97.95  E-value=7.1e-06  Score=70.44  Aligned_cols=64  Identities=20%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhhCCC-CCCCccHHHHhcchhcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLD-NSGALSIDEFMSLPELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ....+...|..+|.| ++|+|+..|+..+....  ...-+..+|+.+|.|+||.|+++||+..+...
T Consensus        75 ~~~~l~W~F~~lD~n~~DG~Isr~EL~~i~~~l~~~e~cv~~ff~~cD~d~Dg~ISl~Ew~~Clg~~  141 (151)
T 1sra_A           75 YIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK  141 (151)
T ss_dssp             GHHHHHHHHHHHCCTTCSSEECTTTTGGGGSTTSTTGGGHHHHHHHHCTTCSSSEEHHHHHHHTTCC
T ss_pred             chhHHHhHHHHHCCCCCCCcCcHHHHHHHHHHhcChHHHHHHHHHHhCCCCCCcCCHHHHHHHhCCC
Confidence            456789999999997 99999999999976432  23458999999999999999999999987654

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=97.94  E-value=1.4e-05  Score=65.02  Aligned_cols=62  Identities=11%  Similarity=0.028  Sum_probs=46.7

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||+ ++|.++.   .++..+|.                    +. |   ++.+++.++++.+|.|+||.|
T Consensus        14 ~~~~~~~F~~~D~-~dG~Is~---~el~~~l~--------------------~~-g---l~~~el~~i~~~~D~d~dG~i   65 (106)
T 1eh2_A           14 KAKYDAIFDSLSP-VNGFLSG---DKVKPVLL--------------------NS-K---LPVDILGRVWELSDIDHDGML   65 (106)
T ss_dssp             HHHHHHHHTTSCC-SSSCCBH---HHHHHHHH--------------------TT-T---CCHHHHHHHHHHHCSSCSSBC
T ss_pred             HHHHHHHHHHhCC-CCCeEcH---HHHHHHHH--------------------Hc-C---CCHHHHHHHHHHHcCCCCCcC
Confidence            3567889999999 8854444   33333333                    21 3   788899999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||..++.
T Consensus        66 d~~EF~~~m~   75 (106)
T 1eh2_A           66 DRDEFAVAMF   75 (106)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987654

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=97.92  E-value=1.8e-05  Score=65.09  Aligned_cols=66  Identities=11%  Similarity=0.045  Sum_probs=47.5

Q ss_pred             HHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCC---CC-CCHHHHHHHHHHhccC
Q psy4132         309 SKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGL---EL-LSPEDLLNSCLALDKL  382 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~---~~-ls~~ei~~~~~~~D~~  382 (473)
                      +.++.+|+.|| +|++| .++.   .||..+|..                    ..|.   .. ++++++..+++.+|.|
T Consensus        12 ~~l~~~F~~fD~~dgdG~~Is~---~El~~~l~~--------------------~lg~~~~~~~~~~~~v~~l~~~~D~d   68 (113)
T 1xk4_C           12 ETIINTFHQYSVKLGHPDTLNQ---GEFKELVRK--------------------DLQNFLKKENKNEKVIEHIMEDLDTN   68 (113)
T ss_dssp             HHHHHHHHHHHTTSSSTTSBCH---HHHHHHHHH--------------------HTTTTTTTGGGCHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhcCCCCCEECH---HHHHHHHHH--------------------HhhhhhcccccCHHHHHHHHHHhCCC
Confidence            56889999999 49996 4555   344444431                    1110   01 5788899999999999


Q ss_pred             CCCCeeHHhhhccce
Q psy4132         383 PDSPIYLKTYSSGVK  397 (473)
Q Consensus       383 ~dg~Is~~EF~~~~~  397 (473)
                      +||.|+++||+..+.
T Consensus        69 ~dG~I~f~EF~~~~~   83 (113)
T 1xk4_C           69 ADKQLSFEEFIMLMA   83 (113)
T ss_dssp             CSSSBCHHHHHHHHH
T ss_pred             CCCCEeHHHHHHHHH
Confidence            999999999987654

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=97.90  E-value=2.8e-05  Score=84.92  Aligned_cols=122  Identities=12%  Similarity=0.185  Sum_probs=94.1

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhh-------CCCCCCCccHHHHhcch-hccCCHHHHHHHHH
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKL-------DLDNSGALSIDEFMSLP-ELQQNPLVQRVIDI  280 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~-------D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~  280 (473)
                      +|.|+||+|++.|...++..      ......++.++++..       |.+++|.|+.+||..+. .+...+.+.++|+.
T Consensus       164 fd~n~dG~Is~kEl~~~l~~------~~~~~~el~~~~~~~~~~~~k~D~~~~g~L~FeEF~~f~~~L~~R~EI~eiF~~  237 (816)
T 3qr0_A          164 TVEMEKNKIPVKAIQKCLSK------DKDDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLERSEIEGIFKE  237 (816)
T ss_dssp             HTSCCSSEEEHHHHHHHHCS------CHHHHHHHHHHHHHHTSCCSTTCEEETTTCCHHHHHHHHHHHCCCTHHHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHh------cCChHHHHHHHHHHhcccccccccCCCCcCCHHHHHHHHHhcCCHHHHHHHHHH
Confidence            67899999999999998872      122235677788877       67889999999999964 44456789999999


Q ss_pred             hcCCCCCcccHHHHHHHHhhcccCC---------CcHHHHHHHhHHhcC--C----CCchhhHhhHHHHHHHHhc
Q psy4132         281 FDEDRNGEVDFKEFIQGVSQFSVKG---------DRESKLKFAFRIYDI--D----NDDDYYQALGNELIAALIE  340 (473)
Q Consensus       281 ~D~d~dG~I~~~EF~~~l~~~~~~~---------~~~e~l~~~F~~~D~--d----~dg~~~~~e~~el~~~L~~  340 (473)
                      ++.+++|.|+. ||..+|.......         ...+.+..+++.||.  +    ++|.++.   +++..+|.+
T Consensus       238 y~~dg~~~mT~-eL~~FL~~~Q~E~~~~~~~~~~~t~e~~~~iI~kye~~~~~~~~~~g~Lsl---dgF~~yL~S  308 (816)
T 3qr0_A          238 LSKNKGNITTV-MFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTK---EGLLYFLMC  308 (816)
T ss_dssp             HTTTSSSEEHH-HHHHHHHHTSSCTTSCTTTSCCCCHHHHHHHHHHHHHHHHGGGCBTTEECH---HHHHHHHHS
T ss_pred             HccCCCCcccH-HHHHHHHHhCCccccccccccccCHHHHHHHHHHhccccchhhhccCCccH---HHHHHHhhc
Confidence            99999999999 9999999875443         357788889988876  4    4544555   566666664

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=97.90  E-value=1.7e-05  Score=64.39  Aligned_cols=65  Identities=11%  Similarity=0.051  Sum_probs=49.1

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.+...   ++..++.                    .. | ..++++++..++..+|.|++|.|
T Consensus        31 ~~~l~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~~~~~l~~~~D~d~dg~i   85 (107)
T 2d58_A           31 LEGFKEKYMEFDLNGNGDIDIM---SLKRMLE--------------------KL-G-VPKTHLELKKLIGEVSSGSGETF   85 (107)
T ss_dssp             HHHHHHHHTTSCCCTTSCEEHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHHHCSSSSSEE
T ss_pred             HHHHHHHHHHHCCCCCCcCcHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHhCCCCCCeE
Confidence            3568889999999999655553   3333332                    22 2 14788999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus        86 ~~~eF~~~~~   95 (107)
T 2d58_A           86 SYPDFLRMML   95 (107)
T ss_dssp             CHHHHHHHHS
T ss_pred             cHHHHHHHHH
Confidence            9999987664

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=97.89  E-value=7.7e-06  Score=61.83  Aligned_cols=67  Identities=25%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             cHHHHHHHhHHhcC-CCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCC-CHHHHHHHHHHhccCC
Q psy4132         307 RESKLKFAFRIYDI-DNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELL-SPEDLLNSCLALDKLP  383 (473)
Q Consensus       307 ~~e~l~~~F~~~D~-d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~l-s~~ei~~~~~~~D~~~  383 (473)
                      ..+.++.+|+.||. |++| .+..   .++..++..                    ..|. .+ +++++..++..+|.|+
T Consensus         5 ~~~~l~~~F~~~D~~d~~G~~i~~---~el~~~l~~--------------------~~g~-~~~~~~~~~~~~~~~D~~~   60 (78)
T 1cb1_A            5 SPAELKSIFEKYAAKEGDPNQLSK---EELKQLIQA--------------------EFPS-LLKGPRTLDDLFQELDKNG   60 (78)
T ss_dssp             CHHHHHHHHHHHHTTSSSTTEECH---HHHHHHHHH--------------------HCSS-CCSSCCCSSHHHHHTCCCS
T ss_pred             HHHHHHHHHHHHhccCCCcCEeCH---HHHHHHHHH--------------------Hhhh-hcccHHHHHHHHHHhcCCC
Confidence            45778999999999 9986 4444   334433332                    1111 13 5666888999999999


Q ss_pred             CCCeeHHhhhccce
Q psy4132         384 DSPIYLKTYSSGVK  397 (473)
Q Consensus       384 dg~Is~~EF~~~~~  397 (473)
                      +|.|+++||...+.
T Consensus        61 dg~i~~~eF~~~~~   74 (78)
T 1cb1_A           61 DGEVSFEEFQVLVK   74 (78)
T ss_dssp             SSSEEHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHH
Confidence            99999999987653

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A

Probab=97.87  E-value=3.2e-05  Score=62.18  Aligned_cols=61  Identities=23%  Similarity=0.368  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhhh------hhhHHHHHHH-----Hhh--hhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLNQ------LMSMAKEMVE-----ISK--NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~------~~e~~~~l~~-----lg~--~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ++...++++||+.||.      ..++...|+.     +|.  .++..  ++..++..  +|.|+||.|+|+||+.+|.
T Consensus         6 ~~~~~~l~~~F~~fD~~~g~Is~~El~~~l~~~~~~~lg~~~~~~~~--ev~~l~~~--~D~d~dG~I~f~EF~~~~~   79 (100)
T 1psr_A            6 ERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTN--YLADVFEK--KDKNEDKKIDFSEFLSLLG   79 (100)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCC--GGGTHHHH--HCTTCSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCeECHHHHHHHHHHHhHhhhccccccCHH--HHHHHHHH--hCCCCCCcCcHHHHHHHHH
Confidence            3456689999999986      6677777776     555  55554  55556553  8999999999999999887

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=97.85  E-value=6.2e-06  Score=65.20  Aligned_cols=65  Identities=12%  Similarity=0.109  Sum_probs=45.3

Q ss_pred             HHHHHHhHHhcC-CCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYDI-DNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~-d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|+.||. |++| .+...   ++..++.                    +..|. .++..++..+++.+|.|+||.
T Consensus        10 ~~l~~~F~~~D~~d~dG~~I~~~---El~~~l~--------------------~~~g~-~~~~~~~~~l~~~~D~d~dG~   65 (93)
T 1xk4_A           10 NSIIDVYHKYSLIKGNFHAVYRD---DLKKLLE--------------------TESPQ-YIRKKGADVWFKELDINTDGA   65 (93)
T ss_dssp             HHHHHHHHHHHTSSSCTTCBCHH---HHHHHHH--------------------HHSCH-HHHTTCHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHhhcCCCcCeECHH---HHHHHHH--------------------HHCcc-cCCHHHHHHHHHHhCCCCCCC
Confidence            578899999999 9996 55553   4444441                    11110 122345788999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...+.
T Consensus        66 I~~~EF~~~~~   76 (93)
T 1xk4_A           66 VNFQEFLILVI   76 (93)
T ss_dssp             BCHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987654

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=97.83  E-value=1.5e-05  Score=62.11  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=48.1

Q ss_pred             HHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|+.|| +|++| .+...   ++..++...+.                  .| ..+++.++..+++.+|.|+||.
T Consensus        10 ~~l~~~F~~~D~~d~~G~~i~~~---el~~~l~~~~~------------------~g-~~~~~~~~~~~~~~~D~~~dg~   67 (90)
T 1k8u_A           10 GLLVAIFHKYSGREGDKHTLSKK---ELKELIQKELT------------------IG-SKLQDAEIARLMEDLDRNKDQE   67 (90)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEHH---HHHHHHHHHSC------------------CG-GGTTSHHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHhccCCCCCcCCHH---HHHHHHHHhcc------------------cC-CCCCHHHHHHHHHHhCCCCCCC
Confidence            57888999999 69996 55553   44444432100                  11 1367788999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...+.
T Consensus        68 i~~~eF~~~~~   78 (90)
T 1k8u_A           68 VNFQEYVTFLG   78 (90)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987654

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=97.78  E-value=2.1e-05  Score=62.63  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             HHHHHHhHHhc-CCCCc-hhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIYD-IDNDD-DYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D-~d~dg-~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.++.+|..|| .|++| .+..   .++..++...+.         ..       .| ..+++.++..+++.+|.|+||.
T Consensus        13 ~~l~~~F~~~Dd~d~~G~~I~~---~el~~~l~~~~~---------~~-------~~-~~~~~~~~~~l~~~~D~~~dg~   72 (99)
T 1qls_A           13 ESLIAIFQKHAGRDGNNTKISK---TEFLIFMNTELA---------AF-------TQ-NQKDPGVLDRMMKKLDLDSDGQ   72 (99)
T ss_dssp             HHHHHHHHHHHTTSSCTTCBCH---HHHHHHHTTTSH---------HH-------HH-HCCCTHHHHHHHHHHCTTCSSS
T ss_pred             HHHHHHHHHHHhcCCCcCeeCH---HHHHHHHHHHcc---------hh-------cc-ccCCHHHHHHHHHHhCCCCCCc
Confidence            46778888887 88885 4444   444444432110         00       00 0367888999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+++||...+.
T Consensus        73 I~~~EF~~~~~   83 (99)
T 1qls_A           73 LDFQEFLNLIG   83 (99)
T ss_dssp             BCHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999987654

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=97.69  E-value=4.4e-05  Score=61.48  Aligned_cols=75  Identities=16%  Similarity=0.079  Sum_probs=45.6

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhc----hhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIE----PLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~----~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      ..++.+|+.||.|++|.+...   ++..++..    .+..........+.          +......+..+|..+|.|+|
T Consensus        20 ~~~~~~F~~~D~d~dG~I~~~---El~~~l~~~~~~~~g~~~~~~~~~~~----------~e~~~~~~~~~~~~~D~d~d   86 (103)
T 1snl_A           20 FNPKTFFILHDINSDGVLDEQ---ELEALFTKELEKVYDPKNEEDDMREM----------EEERLRMREHVMKNVDTNQD   86 (103)
T ss_dssp             CCHHHHHHHHCSSCCSEEEHH---HHHHHHHHHHHTTSCCSSCSSHHHHT----------THHHHHHHHHHHHHTCSSCS
T ss_pred             CCHHHHHHHHcCCCCCcccHH---HHHHHHHHHHHHHhccCCCCccHHHH----------HHHHHHHHHHHHHHcCCCCC
Confidence            357889999999999777664   44444442    11111000000000          00011347788999999999


Q ss_pred             CCeeHHhhhccc
Q psy4132         385 SPIYLKTYSSGV  396 (473)
Q Consensus       385 g~Is~~EF~~~~  396 (473)
                      |.|+++||+..+
T Consensus        87 G~Is~~EF~~~~   98 (103)
T 1snl_A           87 RLVTLEEFLAST   98 (103)
T ss_dssp             SEEEHHHHHHHH
T ss_pred             CcCCHHHHHHHH
Confidence            999999998765

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A

Probab=97.62  E-value=6.3e-05  Score=59.89  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhh-h-----hhhHHHHHHH-----HhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         163 KETSSNINNAFKDLN-Q-----LMSMAKEMVE-----ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD-~-----~~e~~~~l~~-----lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      +....++++||+.|| +     ..++...|+.     +|..++..  ++..++..  +|.|+||.|+|+||+.+|.
T Consensus         5 ~~~~~~l~~~F~~fD~~dg~Is~~El~~~l~~~~~~~lg~~~~~~--ev~~l~~~--~D~d~dG~I~f~EF~~~~~   76 (96)
T 1a4p_A            5 EHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPL--AVDKIMKD--LDQCRDGKVGFQSFFSLIA   76 (96)
T ss_dssp             HHHHHHHHHHHHHHHGGGCSBCHHHHHHHHHHHCHHHHHHSCCTT--HHHHHHHH--HCTTSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCeECHHHHHHHHHHHcccccccccCHH--HHHHHHHH--hCCCCCCcCcHHHHHHHHH
Confidence            344567999999999 3     6777777776     55555655  55666654  8999999999999999887

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A

Probab=97.39  E-value=0.00026  Score=58.65  Aligned_cols=62  Identities=13%  Similarity=-0.004  Sum_probs=46.0

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      .+.+.+|+.+|+ ++|.++.   +++..++                    .+.    .++.+++.++++..|.|+||.|+
T Consensus        33 ~~y~~iF~~lD~-~dG~Isg---~elr~~~--------------------~~s----gLp~~~L~~Iw~laD~d~dG~Ld   84 (121)
T 3fia_A           33 AKHDQQFHSLKP-ISGFITG---DQARNFF--------------------FQS----GLPQPVLAQIWALADMNNDGRMD   84 (121)
T ss_dssp             HHHHHHHHHTCC-BTTBEEH---HHHHHHH--------------------GGG----CCCHHHHHHHHHHHCTTCSSEEC
T ss_pred             HHHHHHHHHhCC-CCCeECH---HHHHHHH--------------------HHc----CCCHHHHHHHHHHHcCCCCCcCC
Confidence            567788999987 6644444   3333333                    332    27899999999999999999999


Q ss_pred             HHhhhcccee
Q psy4132         389 LKTYSSGVKV  398 (473)
Q Consensus       389 ~~EF~~~~~v  398 (473)
                      ++||..++..
T Consensus        85 ~~EF~~aM~L   94 (121)
T 3fia_A           85 QVEFSIAMKL   94 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877653

>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein, anti-adhesive protein, C binding, site-directed mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*

Probab=97.28  E-value=0.00024  Score=65.88  Aligned_cols=63  Identities=21%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhhCC-CCCCCccHHHHhcchhcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         239 IRRLGKRFRKLDL-DNSGALSIDEFMSLPELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       239 ~~~l~~~F~~~D~-d~~G~Is~~el~~l~~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+...|..+|. |+||+|+..||..+....  ...-+..+|+..|.|+||.|+++||...+...
T Consensus       154 ~~~v~w~F~~lD~~n~dg~l~~~El~~i~~~l~~~~~c~~~~~~~cD~n~D~~is~~Ew~~cf~~~  219 (229)
T 1nub_A          154 IFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK  219 (229)
T ss_dssp             HHHHHHHHHHHTTTTCSSEECTTTTGGGGSTTSTTGGGHHHHHHHHCTTCSSCEEHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHcCCCCCCcCCHHHHHHHhCCC
Confidence            3456789999999 899999999999976432  22347899999999999999999999887543

>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3

Probab=97.11  E-value=0.00012  Score=62.74  Aligned_cols=63  Identities=11%  Similarity=-0.043  Sum_probs=44.2

Q ss_pred             HHHHHHhHHhcCC-CCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYDID-NDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D~d-~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ..+..+|..||.| +||.+...|+..   ++..+.                        ....-+..+|+.+|.|+||.|
T Consensus        77 ~~l~W~F~~lD~n~~DG~Isr~EL~~---i~~~l~------------------------~~e~cv~~ff~~cD~d~Dg~I  129 (151)
T 1sra_A           77 FPVHWQFGQLDQHPIDGYLSHTELAP---LRAPLI------------------------PMEHCTTRFFETCDLDNDKYI  129 (151)
T ss_dssp             HHHHHHHHHHCCTTCSSEECTTTTGG---GGSTTS------------------------TTGGGHHHHHHHHCTTCSSSE
T ss_pred             hHHHhHHHHHCCCCCCCcCcHHHHHH---HHHHhc------------------------ChHHHHHHHHHHhCCCCCCcC
Confidence            4678899999997 886666643333   322110                        112236788999999999999


Q ss_pred             eHHhhhcccee
Q psy4132         388 YLKTYSSGVKV  398 (473)
Q Consensus       388 s~~EF~~~~~v  398 (473)
                      |++||...+.+
T Consensus       130 Sl~Ew~~Clg~  140 (151)
T 1sra_A          130 ALDEWAGCFGI  140 (151)
T ss_dssp             EHHHHHHHTTC
T ss_pred             CHHHHHHHhCC
Confidence            99999987754

>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=97.03  E-value=0.0002  Score=59.03  Aligned_cols=90  Identities=17%  Similarity=0.227  Sum_probs=59.4

Q ss_pred             CceeHHHHHHHHccccccccchHHHHHHHHHHHhhC-----CCCCCCccHHHHhcchhc----c--CCHHHHHHHHHhcC
Q psy4132         215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLD-----LDNSGALSIDEFMSLPEL----Q--QNPLVQRVIDIFDE  283 (473)
Q Consensus       215 G~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D-----~d~~G~Is~~el~~l~~~----~--~~~~~~~l~~~~D~  283 (473)
                      ++++-++|..+....   .-...++..+.+-|.  |     ...+|.|+.++|+.+...    +  ....+..+|+.||.
T Consensus         6 s~lspe~l~~L~~~t---~fs~~elk~~y~~F~--~g~~~k~cp~G~i~~e~F~~i~~~ffp~~~~p~~~~~~lF~~Fd~   80 (118)
T 1tuz_A            6 GLISPSDFAQLQKYM---EYSTKKVSDVLKLFE--DGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFET   80 (118)
T ss_dssp             SCSCHHHHHHHHHHH---HHCCCCHHHHHHHHH--TSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCC
T ss_pred             CcCCHHHHHHHHHHc---ccCHHHHHHHHHHHc--cccccccCCCCCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhc
Confidence            345556665544311   123446666777775  3     456899999999996322    2  23357889999998


Q ss_pred             CC--------CCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         284 DR--------NGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       284 d~--------dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      |+        +|.|+|.||+.+++.+ ..+.++++
T Consensus        81 ~~~~~~~~~~~g~I~fkefi~~LSll-~rG~~edK  114 (118)
T 1tuz_A           81 GHCLNETNVTKDVVCLNDVSCYFSLL-EGGRPEDK  114 (118)
T ss_dssp             CCCTTCCCCCSCCEEHHHHHHHHHHH-HSCCCSCC
T ss_pred             ccccccccCCCCeEeHHHHHHHHHHh-cCCCHHHh
Confidence            75        8999999999999887 34444443

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=96.97  E-value=0.00087  Score=69.28  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeeec-----CccccccchhhhhHHHhhhhcccc-cCcccE
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK-----DITLCLALSYIQNAVEEAKSMFNL-TAGRKI   81 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~~-----~~~~~l~l~~v~~~~~~~~~~~~~-~~s~ki   81 (473)
                      .+.|-|||.++...++|.+...-  .+...|+|+||+|||||.+     ...+.+||..|.+++...+ .-+. ..+-.|
T Consensus         6 ~~~lLpGE~i~~~~~~V~~~~~~--~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~-~s~~~~~~~~l   82 (528)
T 1zsq_A            6 EPPLLPGENIKDMAKDVTYICPF--TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGG-ASSRGENSYGL   82 (528)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETT--TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECC-TTCCSTTCSEE
T ss_pred             CCccCCCCeEEEecCCEEEeCCC--CCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCC-CCcCCCCCceE
Confidence            45689999999999999965322  2458999999999999992     2358999999999976432 1000 122357


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCeEEEeccCCC--chHHHHHHHH
Q psy4132          82 ILYLSKAVPGKNLGPSATSAYDYVKLSFREGI--QNEFLDALKS  123 (473)
Q Consensus        82 ~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg--~~~F~~~l~~  123 (473)
                      .++.+              ....+++.|+..+  ....+..|..
T Consensus        83 ~I~CK--------------Dfr~~~f~f~~~~~~~~~v~~~L~~  112 (528)
T 1zsq_A           83 ETVCK--------------DIRNLRFAHKPEGRTRRSIFENLMK  112 (528)
T ss_dssp             EEEET--------------TTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred             EEEcc--------------CCeEEEEEecCchHHHHHHHHHHHH
Confidence            77776              3457788887553  2345555544

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=96.86  E-value=0.0011  Score=69.76  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeeec-----CccccccchhhhhHHHhhhhcccc-cCcccE
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQK-----DITLCLALSYIQNAVEEAKSMFNL-TAGRKI   81 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~~-----~~~~~l~l~~v~~~~~~~~~~~~~-~~s~ki   81 (473)
                      .+.|-|||.++...++|.+....  .+...|+|+||+|||||.+     ...+.|||..|.+++...+ .-+. ..+-.|
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~--~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g-~s~~g~~~~~l  154 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPF--TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGG-ASSRGENSYGL  154 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETT--TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECC-TTCCSTTCSEE
T ss_pred             CCccCCCeeEEEEeCCEEEecCC--CCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCC-CcccCCCCceE
Confidence            45689999999999999754322  2357899999999999992     2357999999999976431 1000 123357


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCeEEEeccCCC--chHHHHHHHH
Q psy4132          82 ILYLSKAVPGKNLGPSATSAYDYVKLSFREGI--QNEFLDALKS  123 (473)
Q Consensus        82 ~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg--~~~F~~~l~~  123 (473)
                      .++.+              ....+++.|+..+  ....+..|..
T Consensus       155 ~I~CK--------------DfR~~~f~f~~~~~~~~~v~~~L~~  184 (657)
T 1lw3_A          155 ETVCK--------------DIRNLRFAHKPEGRTRRSIFENLMK  184 (657)
T ss_dssp             EEEET--------------TTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred             EEEec--------------CCcEEEEEeCCccchHHHHHHHHHH
Confidence            77776              3467888887553  2455565554

>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=96.77  E-value=0.003  Score=51.89  Aligned_cols=94  Identities=15%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             CCCCccHHHHhcchhc--cCCHHHHHHHHHh-c-----CCCCCcccHHHHHHHHhhcccCC-CcHHHHHHHhHHhcCCCC
Q psy4132         253 NSGALSIDEFMSLPEL--QQNPLVQRVIDIF-D-----EDRNGEVDFKEFIQGVSQFSVKG-DRESKLKFAFRIYDIDND  323 (473)
Q Consensus       253 ~~G~Is~~el~~l~~~--~~~~~~~~l~~~~-D-----~d~dG~I~~~EF~~~l~~~~~~~-~~~e~l~~~F~~~D~d~d  323 (473)
                      ..+.+++++|..+...  -....++.+++.| |     ...+|.|++++|..++..+...+ .+..-...+|+.||.|++
T Consensus         4 ~~s~lspe~l~~L~~~t~fs~~elk~~y~~F~~g~~~k~cp~G~i~~e~F~~i~~~ffp~~~~p~~~~~~lF~~Fd~~~~   83 (118)
T 1tuz_A            4 ERGLISPSDFAQLQKYMEYSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETGHC   83 (118)
T ss_dssp             CCSCSCHHHHHHHHHHHHHCCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCCCC
T ss_pred             ccCcCCHHHHHHHHHHcccCHHHHHHHHHHHccccccccCCCCCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcccc
Confidence            4557889998887432  3455677888888 2     45689999999999999987776 888888889999998763


Q ss_pred             chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhh
Q psy4132         324 DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRA  361 (473)
Q Consensus       324 g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~  361 (473)
                      ....               ...+|.|++.|+.|++.-.
T Consensus        84 ~~~~---------------~~~~g~I~fkefi~~LSll  106 (118)
T 1tuz_A           84 LNET---------------NVTKDVVCLNDVSCYFSLL  106 (118)
T ss_dssp             TTCC---------------CCCSCCEEHHHHHHHHHHH
T ss_pred             cccc---------------cCCCCeEeHHHHHHHHHHh
Confidence            1000               0123667777777766653

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=96.48  E-value=0.0026  Score=52.48  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee------cCc--cccccchhhhhHHHhhhhcccccCcc
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ------KDI--TLCLALSYIQNAVEEAKSMFNLTAGR   79 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~------~~~--~~~l~l~~v~~~~~~~~~~~~~~~s~   79 (473)
                      .+.|.|||.+...-.-|            .+.+..|++|||.+      ++.  -.++|.+.|.++..+.+|.|  -..+
T Consensus        25 ~~~L~~gE~I~~ayk~i------------RD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~f--DlDa   90 (126)
T 3hsa_A           25 SPILGDNEELQLAYXMV------------RDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTF--DMDA   90 (126)
T ss_dssp             GGGSCTTCCEEEEEECS------------SEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTT--SCEE
T ss_pred             HHhcCCCCEEEEEehhc------------CceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccc--cCCc
Confidence            56688999988765443            38899999999999      222  35999999999988877874  5678


Q ss_pred             cEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCC-chHHHHHHHHHH
Q psy4132          80 KIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI-QNEFLDALKSTV  125 (473)
Q Consensus        80 ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg-~~~F~~~l~~~l  125 (473)
                      .|+++++..             ..-+++-|+++- -.++++.|...+
T Consensus        91 Elki~isg~-------------~~pi~~~f~k~~di~~i~k~La~~v  124 (126)
T 3hsa_A           91 ELXLWISGQ-------------HEPLVXELXRGTDVVGIQXTIARYA  124 (126)
T ss_dssp             EEEEEETTC-------------SSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCC-------------ceEEEEeccCcccHHHHHHHHHHHh
Confidence            899998521             112899999874 578888887654

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=96.30  E-value=0.0043  Score=46.93  Aligned_cols=59  Identities=19%  Similarity=0.119  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhhC------CCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccccc
Q psy4132         409 FVEKTYEIVSQN------VFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENK  467 (473)
Q Consensus       409 ~~~~~~~~~~~~------~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n~  467 (473)
                      ....|++++...      +..|..|||+.+++|..-++..|...|+.|+|.|+-+..|.+.++-.
T Consensus         5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~~   69 (77)
T 2jt1_A            5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRL   69 (77)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEE
T ss_pred             HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHHH
Confidence            344555555444      78999999999999999999999999999999999877776665543

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.95  E-value=0.011  Score=44.69  Aligned_cols=47  Identities=15%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         409 FVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       409 ~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      ++..|.+++...+.++..|+|+.|++|...++..|...|++|.|.|-
T Consensus         3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence            36788999999999999999999999999999999999999999886

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=95.91  E-value=0.024  Score=45.32  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             CCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhHHHhhhhcccccCcccEEEEeecC
Q psy4132          13 PDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKA   88 (473)
Q Consensus        13 ~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~   88 (473)
                      ..|.+++...+|..       ..++|+||||+-||.|.    +...+++++..|.+.....      -.++||-|+|--.
T Consensus         4 ~~~~~ll~v~~v~y-------KK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP------~~k~KVqLqi~l~   70 (108)
T 1pfj_A            4 SSEEVLLIVKKVRQ-------KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISP------EGKAKIQLQLVLH   70 (108)
T ss_dssp             SSCCEEEEESCCBC-------SSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECC------SSSSSCEEEEECS
T ss_pred             cchheeEEehhhee-------ecCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCC------CCCccEEEEEEEe
Confidence            45677777777654       35669999999999999    4566788888888764333      3788998888532


Q ss_pred             CCCCCCCCCCCCCCCeEEEeccCCC
Q psy4132          89 VPGKNLGPSATSAYDYVKLSFREGI  113 (473)
Q Consensus        89 ~~~~~~~p~~~~~~~~iklsFr~gg  113 (473)
                      +            +.-..|.|-...
T Consensus        71 ~------------~~~~~F~Ftn~~   83 (108)
T 1pfj_A           71 A------------GDTTNFHFSNES   83 (108)
T ss_dssp             S------------SCEEEEECCCSS
T ss_pred             C------------CCceEEEEcCcH
Confidence            1            123467777654

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.63  E-value=0.011  Score=45.62  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      +..|.+++...+.++..|+|+.|++|...++..|...+++|.|.|-
T Consensus         4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence            5678899999999999999999999999999999999999999986

>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein, anti-adhesive protein, C binding, site-directed mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*

Probab=95.55  E-value=0.0036  Score=57.93  Aligned_cols=65  Identities=18%  Similarity=0.040  Sum_probs=44.0

Q ss_pred             HHHHHHhHHhcC-CCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYDI-DNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D~-d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ..+.+.|..||. |+||.+...|+..|...|.                           ....=+..+|+..|.|+||.|
T Consensus       155 ~~v~w~F~~lD~~n~dg~l~~~El~~i~~~l~---------------------------~~~~c~~~~~~~cD~n~D~~i  207 (229)
T 1nub_A          155 FPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI---------------------------PMEHCTTRFFETCDLDNDKYI  207 (229)
T ss_dssp             HHHHHHHHHHTTTTCSSEECTTTTGGGGSTTS---------------------------TTGGGHHHHHHHHCTTCSSCE
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHh---------------------------hHHHHHHHHHHHcCCCCCCcC
Confidence            356778999998 7886666643333331110                           011125678999999999999


Q ss_pred             eHHhhhccceeee
Q psy4132         388 YLKTYSSGVKVLQ  400 (473)
Q Consensus       388 s~~EF~~~~~vl~  400 (473)
                      |++||...+.+..
T Consensus       208 s~~Ew~~cf~~~~  220 (229)
T 1nub_A          208 ALDEWAGCFGIKQ  220 (229)
T ss_dssp             EHHHHHHHTTCCG
T ss_pred             CHHHHHHHhCCCc
Confidence            9999998877543

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=95.54  E-value=0.0054  Score=53.62  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=33.4

Q ss_pred             CCCCCCC--CceEEeecceeeecCCCCCcccCcEEEeeeeeeeee--cCccccccchhhh
Q psy4132           8 SFELSPD--ESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ--KDITLCLALSYIQ   63 (473)
Q Consensus         8 ~~~l~~~--E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~--~~~~~~l~l~~v~   63 (473)
                      ++..-|.  |.+++.+.+|.++-|+.-.  ..|+||+|+-||+|.  ....++||...|.
T Consensus        14 ~~~~~p~~~E~v~~~~~~v~~vl~~~~~--g~GtLyVt~~~l~W~~~~~~G~sI~YpsIs   71 (171)
T 1zyi_A           14 KSFPPPGSAEGLRQQQPETEAVLNGKGL--GTGTLYIAESRLSWLDGSGLGFSLEYPTIS   71 (171)
T ss_dssp             -------------CBCSSEEEEBTTBCC--CEEEEEEETTEEEEEETTTEEEEESSCCCS
T ss_pred             ccCCCCCCccceEEEcCCEEEEECCCcc--CceEEEEEcCEEEEEcCCCcEEEeecCeEE
Confidence            3444577  9999999999999987543  579999999999999  3444555554443

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=94.69  E-value=0.072  Score=40.29  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc--cccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE--GLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~--g~~~~~  465 (473)
                      ..++.++...+.+|..|+|+.+++|..-+...|...++.|+|.+.....  |.+|..
T Consensus         3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l   59 (81)
T 2htj_A            3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFL   59 (81)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEE
Confidence            4567777777889999999999999999999999999999999654333  344443

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=94.66  E-value=0.064  Score=40.83  Aligned_cols=57  Identities=11%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhCC---CCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         408 SFVEKTYEIVSQNV---FVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       408 ~~~~~~~~~~~~~~---~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      ..-.+|+.++..++   .+|+.++|+.+++|-.-.+..|...++.|.|++-++-- -+|+.
T Consensus        10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~-~~W~i   69 (81)
T 1qbj_A           10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWKI   69 (81)
T ss_dssp             HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS-CEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CeeEE
Confidence            34467788888888   89999999999999999999999999999999865332 44443

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=94.23  E-value=0.073  Score=40.44  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccccc
Q psy4132         405 EDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYEN  466 (473)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n  466 (473)
                      +..+...+|+.++..++ +|+.|+|+.+|+|-.-++.+|...|..|.|++- +..=.+||.+
T Consensus        14 ~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~-~~~PP~W~~~   73 (82)
T 1oyi_A           14 SNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMT   73 (82)
T ss_dssp             CSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC-SSSSCEEESC
T ss_pred             chHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCCCCcceec
Confidence            34578899999998776 999999999999999999999999999999984 2222556554

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=94.17  E-value=0.049  Score=41.22  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHH-HHHHHHHHHHHcCCcccc
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLV-IAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~-~~~~~l~~~~~~g~l~~d  455 (473)
                      ..+...+|+.++...+++|+.+||+.++++.. -++..|...|..|+|++-
T Consensus         9 ~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~   59 (79)
T 1xmk_A            9 MAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ   59 (79)
T ss_dssp             HHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred             chhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence            35778899999999999999999999999999 999999999999999964

>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*

Probab=94.13  E-value=0.14  Score=41.11  Aligned_cols=83  Identities=23%  Similarity=0.324  Sum_probs=57.0

Q ss_pred             ccCcEEEeeee----eeeee---cCccccccchhhhhHHHhhhhcccccCcccEEEEeecCCC-CC----CCCCCCCCCC
Q psy4132          35 FQRGELILTSH----RLFWQ---KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVP-GK----NLGPSATSAY  102 (473)
Q Consensus        35 ~~~G~l~LTsh----Rii~~---~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~~~-~~----~~~p~~~~~~  102 (473)
                      .++|.|.++.-    -|.|.   +...++|||..|.++.-..      -.|||+.|.|-..+. ++    +.|+......
T Consensus        11 Kk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp------~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p   84 (115)
T 1y5o_A           11 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATP------ASSEKMMLRLIGKVDESKKRKDNEGNEVVPKP   84 (115)
T ss_dssp             SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECC------TTCSSEEEEEEECSCCSSSCCCCSSCCSSCCC
T ss_pred             ecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCC------CCCCceEEEEEEeccccccccCCCcCCCCCCc
Confidence            58999999998    89999   7788999999999975433      489999999964431 00    1122222344


Q ss_pred             CeEEEeccCCCchHHHHHHHHHHh
Q psy4132         103 DYVKLSFREGIQNEFLDALKSTVD  126 (473)
Q Consensus       103 ~~iklsFr~gg~~~F~~~l~~~l~  126 (473)
                      ....|+|-.   ..--.+++++|+
T Consensus        85 ~~~~F~Ftn---R~~~d~IKd~Lq  105 (115)
T 1y5o_A           85 QRHMFSFNN---RTVMDNIKMTLQ  105 (115)
T ss_dssp             EEEEEEESC---HHHHHHHHHHHH
T ss_pred             ceEEEEeCC---HHHHHHHHHHHH
Confidence            567789987   444445555553

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=94.13  E-value=0.049  Score=41.03  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhCC---CCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccc
Q psy4132         410 VEKTYEIVSQNV---FVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFY  464 (473)
Q Consensus       410 ~~~~~~~~~~~~---~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~  464 (473)
                      -..|+.++..++   ++|+.|+|+.+++|..-.+..|...++.|.|++-++-- -+|+
T Consensus        16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~-~~W~   72 (77)
T 1qgp_A           16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWK   72 (77)
T ss_dssp             HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS-CEEE
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CceE
Confidence            366788888888   99999999999999999999999999999999976432 3444

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=93.19  E-value=0.058  Score=55.43  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             EEeecceeeecCCC-CCcccCcEEEeeeeeeeee--cCccccccchhhhhHHHhhhhcccccCcccEEEEeecCCCCCCC
Q psy4132          18 VLKHSNVRLYDGEN-KSQFQRGELILTSHRLFWQ--KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNL   94 (473)
Q Consensus        18 ~~~~~~v~ly~g~~-~~~~~~G~l~LTshRii~~--~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~~~~~~~   94 (473)
                      +-..+||.|++.-. ..+-..|+|+||+|||||.  ...-+-||+..|..++... ..   .+...|.++.+        
T Consensus         6 ~~~v~~V~l~~~~~~~~~~~~GtL~lTn~~LiF~~~~~~e~wi~~~~I~~VeK~~-~~---~~~~~l~I~CK--------   73 (512)
T 2yf0_A            6 TTKVEQVKLLDRFSTSNKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVEKLA-LT---TSGCPLVIQCK--------   73 (512)
T ss_dssp             EEEEEECCCC--------CCEEEEEECSSEEEEEESSSCEEEEEGGGEEEEEECC-CB---TTBEEEEEEET--------
T ss_pred             cCccccEEEEeccCCCCCceeEEEEEECCEEEEeCCCCCceEecccceeEEEEec-CC---CCCceEEEEec--------
Confidence            34568999987533 3457899999999999999  3445778999999987543 22   23345777776        


Q ss_pred             CCCCCCCCCeEEEeccCC
Q psy4132          95 GPSATSAYDYVKLSFREG  112 (473)
Q Consensus        95 ~p~~~~~~~~iklsFr~g  112 (473)
                            ....+++.|...
T Consensus        74 ------Dfr~~~f~f~~~   85 (512)
T 2yf0_A           74 ------NFRTVHFIVPRE   85 (512)
T ss_dssp             ------TSCEEEEEESCH
T ss_pred             ------CCcEEEEEeCCh
Confidence                  356788888743

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=92.33  E-value=0.16  Score=38.37  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=46.0

Q ss_pred             HHHHHHHhhC--CCCCHHHHHHhh-----CCcHHHHHHHHHHHHHcCCccccCCccccccc
Q psy4132         411 EKTYEIVSQN--VFVTVEQFSRLA-----SVSLVIAKHRLLLAETHGKLCRDQSIEGLRFY  464 (473)
Q Consensus       411 ~~~~~~~~~~--~~ls~~e~a~~~-----~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~  464 (473)
                      ..|++++...  +++|+.|+++.+     ++|..-+...|...++.|+|.|.....|..+|
T Consensus        20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y   80 (83)
T 2fu4_A           20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF   80 (83)
T ss_dssp             HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence            4566666554  689999999999     99999999999999999999998887776555

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=91.36  E-value=0.15  Score=41.22  Aligned_cols=46  Identities=15%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhh--CCcHHHHHHHHHHHHHcCCccccC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLA--SVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~--~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      .+|+.++..++.+|+.++|..+  ++|..-+.++|...++.|+|.+-.
T Consensus        16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~   63 (111)
T 3b73_A           16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLA   63 (111)
T ss_dssp             HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence            6778888888899999999999  999999999999999999998753

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=89.54  E-value=0.36  Score=37.41  Aligned_cols=47  Identities=11%  Similarity=0.118  Sum_probs=41.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ..++.++...+++|..|+|+.+++|..-+...|...++.|+|.+...
T Consensus        27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~   73 (99)
T 3cuo_A           27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD   73 (99)
T ss_dssp             HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence            45666666667899999999999999999999999999999988653

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=89.04  E-value=0.42  Score=37.20  Aligned_cols=54  Identities=7%  Similarity=0.067  Sum_probs=43.6

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      ..++.++.. +.+|..|+|+.+++|..-....|...++.|+|.+........|..
T Consensus        26 ~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l   79 (98)
T 3jth_A           26 LQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL   79 (98)
T ss_dssp             HHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred             HHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence            456666655 889999999999999999999999999999998775443344443

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=89.00  E-value=0.62  Score=36.12  Aligned_cols=50  Identities=16%  Similarity=0.040  Sum_probs=41.6

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYEN  466 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n  466 (473)
                      .+++.++  .+.+|..|+|+.+++|..-....|...++.|+|.+..   | +|..+
T Consensus        34 ~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~---g-~y~l~   83 (96)
T 1y0u_A           34 RKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---E-RWVVT   83 (96)
T ss_dssp             HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---T-EEEEC
T ss_pred             HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC---C-EEEEC
Confidence            4556666  4679999999999999999999999999999999876   4 55444

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=88.89  E-value=0.35  Score=36.39  Aligned_cols=55  Identities=11%  Similarity=0.059  Sum_probs=43.9

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhC----CcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLAS----VSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~----~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      ..++.++...+++|..|+++.++    |+..-....|...++.|+|.|.......+|++
T Consensus        12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~   70 (82)
T 1p6r_A           12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP   70 (82)
T ss_dssp             HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence            44566666678999999999996    89999999999999999999876433345544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=88.73  E-value=0.47  Score=49.56  Aligned_cols=65  Identities=23%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+...+..+|..+|.. +|+|+-.+.+.++. .+ ....+..++...|.+++|.++.+||+-+|+..
T Consensus       454 ~~~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~Li  520 (550)
T 2qpt_A          454 TKDKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLI  520 (550)
T ss_dssp             TTTHHHHHHHHHHTCCS-SSEECHHHHHHHHHHTTCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC-CCeecHHHHHHHHHHcCCCHHHHHHHhcccCCCCCCcCCHHHHHHHHHHH
Confidence            34678899999999965 59999999998643 22 34457899999999999999999999988654

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=88.72  E-value=0.66  Score=39.97  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++..++.++++|..++|+.+|+|..-+.++|...++.|.+.|
T Consensus         6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~   49 (162)
T 3i4p_A            6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR   49 (162)
T ss_dssp             HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence            57888999999999999999999999999999999999999886

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=88.52  E-value=0.61  Score=33.79  Aligned_cols=45  Identities=13%  Similarity=0.153  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhC-CCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         410 VEKTYEIVSQN-VFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       410 ~~~~~~~~~~~-~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      -.+|++++..+ ..+|..|||+.+++|-......|...++.|+|+.
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~   57 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS   57 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence            45677777665 5799999999999999999999999999999876

>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47

Probab=88.20  E-value=0.74  Score=33.69  Aligned_cols=51  Identities=18%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc--ccCC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC--RDQS  457 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~--~d~~  457 (473)
                      ...+.....++.....+..+++|..|+++...+.++|+..+..|.|.  .|+.
T Consensus         6 ~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDR   58 (72)
T 1wi9_A            6 SGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDR   58 (72)
T ss_dssp             CCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTT
T ss_pred             HHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45677888899999999999999999999999999999999999986  5663

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=88.01  E-value=0.58  Score=38.23  Aligned_cols=55  Identities=15%  Similarity=0.061  Sum_probs=42.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      .+++.++...+.+|..|+|+.+++|..-....|...++.|+|.+.......+|+.
T Consensus        45 l~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l   99 (122)
T 1u2w_A           45 AKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSL   99 (122)
T ss_dssp             HHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred             HHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEE
Confidence            3566666667889999999999999999999999999999998765433344443

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=87.94  E-value=1.3  Score=32.76  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHhh---CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         405 EDASFVEKTYEIVSQ---NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       405 ~~~~~~~~~~~~~~~---~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ++.++.+.+.+.+..   +...|+.+||+.+|++=.-++..|-..+..|.|+.-.+
T Consensus         9 ~~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~   64 (75)
T 1sfu_A            9 NDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS   64 (75)
T ss_dssp             CSHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred             chHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCC
Confidence            566777777666554   45599999999999999999999999999999987654

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=87.39  E-value=0.89  Score=37.84  Aligned_cols=51  Identities=10%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      .+.++..++.++...+++|..++|+.+++|..-+...|...+..|+|.|..
T Consensus         6 ~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~   56 (142)
T 1on2_A            6 MEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK   56 (142)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence            356778888888777899999999999999999999999999999999864

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=87.33  E-value=0.7  Score=41.87  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         405 EDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +.+++++.++.+....+.++..++|+.++++..-+.+.|...+++|+|.|..
T Consensus         3 ~~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~   54 (214)
T 3hrs_A            3 NKEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK   54 (214)
T ss_dssp             CHHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred             hHHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence            4578999999988888899999999999999999999999999999999875

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=87.27  E-value=0.91  Score=38.14  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      ..++.+++.++.+|..|+|+.+|+|..-+.++|...++.|.|.|
T Consensus         8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   51 (144)
T 2cfx_A            8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ   51 (144)
T ss_dssp             HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence            46788888889999999999999999999999999999999986

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=87.26  E-value=0.88  Score=39.05  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..|+|+.+|+|..-+..+|...++.|.|.|
T Consensus        13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   56 (162)
T 2p5v_A           13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ   56 (162)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence            57888888899999999999999999999999999999999986

>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13

Probab=87.05  E-value=0.46  Score=41.75  Aligned_cols=88  Identities=10%  Similarity=0.023  Sum_probs=62.6

Q ss_pred             CCCCCC--CCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee------cC--ccccccch--hhhhHHHhhhhcccc
Q psy4132           8 SFELSP--DESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ------KD--ITLCLALS--YIQNAVEEAKSMFNL   75 (473)
Q Consensus         8 ~~~l~~--~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~------~~--~~~~l~l~--~v~~~~~~~~~~~~~   75 (473)
                      .+-|.|  ||.+...-.-+            ...+.+|++|||.+      ++  .-.++|.+  .|.++..+.+|.|  
T Consensus        19 ~~~Ll~EdgE~I~~ayk~i------------rD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETAGtf--   84 (193)
T 3b77_A           19 DDYVLHEDGEKIYFLIKSK------------TDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETAGTV--   84 (193)
T ss_dssp             GGGSCGGGTCCEEEEEECS------------SEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECCCSS--
T ss_pred             hhhccCCCCCEEeeeeeec------------ceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEeccee--
Confidence            444666  88887654432            33899999999999      22  23489999  9999988887874  


Q ss_pred             cCcccEEEEeecCCCCCCCCCCCCCCCCeEEEeccC--C-CchHHHHHHHHH
Q psy4132          76 TAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFRE--G-IQNEFLDALKST  124 (473)
Q Consensus        76 ~~s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~--g-g~~~F~~~l~~~  124 (473)
                      -..+-|++.+.               +..+++.|++  + ...+||..|...
T Consensus        85 DlDaElki~i~---------------~~~~~Ief~K~~~~di~~lyk~L~~i  121 (193)
T 3b77_A           85 DLDVEIKFEIG---------------GKHYSIDVDKKQLEHVKDLYKALLAI  121 (193)
T ss_dssp             CCEEEEEEEET---------------TEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred             ccCccEEEEEc---------------CceEEEEeCCcchhhHHHHHHHHHHH
Confidence            67788888884               2346788887  4 446777777653

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=86.58  E-value=0.95  Score=38.26  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=41.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..++|+.+|+|..-+.++|...++.|.|.|
T Consensus        12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   55 (151)
T 2dbb_A           12 MQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK   55 (151)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence            57788888899999999999999999999999999999999986

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=86.50  E-value=0.52  Score=37.19  Aligned_cols=53  Identities=11%  Similarity=0.002  Sum_probs=41.6

Q ss_pred             HHHHHhhCCCCCHHHHHHhhC----CcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLAS----VSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~----~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      ++.++...+++|+.|+++.++    |+.+-....|...|++|+|.|....-...|++
T Consensus        40 VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p   96 (99)
T 2k4b_A           40 VMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYRP   96 (99)
T ss_dssp             HHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEEC
T ss_pred             HHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEEE
Confidence            334444467899999999996    78899999999999999999976544455554

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=86.46  E-value=1.1  Score=37.22  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=41.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ..++..+..++.+|..++|+.+|+|..-..++|...++.|.|.|-.
T Consensus         7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~   52 (141)
T 1i1g_A            7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYT   52 (141)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccc
Confidence            4567777788899999999999999999999999999999997643

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=86.43  E-value=1  Score=38.10  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=40.8

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.++..++.+|..++|+.+|+|..-+..+|...++.|.|.|
T Consensus        10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   53 (150)
T 2w25_A           10 RILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG   53 (150)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence            46777888889999999999999999999999999999999975

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=86.42  E-value=0.95  Score=38.35  Aligned_cols=44  Identities=14%  Similarity=0.084  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..++|+.+|+|..-+.++|...++.|.+.|
T Consensus        11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   54 (152)
T 2cg4_A           11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG   54 (152)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence            57788888899999999999999999999999999999999986

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=86.39  E-value=1.1  Score=37.88  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++++|..++|+.+|+|..-...+|...++.|.|.|
T Consensus         6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   49 (150)
T 2pn6_A            6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG   49 (150)
T ss_dssp             HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence            56778888889999999999999999999999999999999987

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=86.35  E-value=1.5  Score=30.37  Aligned_cols=39  Identities=18%  Similarity=0.054  Sum_probs=34.3

Q ss_pred             hhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         418 SQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       418 ~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +-.++.|+.|.|..|+||...|+..|+..-..|.|-.-.
T Consensus        14 s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRs   52 (68)
T 3i71_A           14 SVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRS   52 (68)
T ss_dssp             HCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhc
Confidence            345799999999999999999999999999999886433

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=85.85  E-value=1.2  Score=37.62  Aligned_cols=44  Identities=11%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..++|+.+|+|..-+..+|...++.|.|.|
T Consensus        10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~   53 (151)
T 2cyy_A           10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK   53 (151)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence            56788888899999999999999999999999999999999987

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=85.06  E-value=1.4  Score=37.26  Aligned_cols=50  Identities=14%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      +.++..+..++...+.+|..++|+.+++|-.-..+.|...+..|+|.|..
T Consensus        39 ~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~   88 (155)
T 2h09_A           39 DDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP   88 (155)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence            45677777777777889999999999999999999999999999998764

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=85.05  E-value=0.88  Score=36.00  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      .+++.++. .+.+|..|+|+.+++|..-....|...++.|+|.+........|+.
T Consensus        29 ~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l   82 (106)
T 1r1u_A           29 IRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSL   82 (106)
T ss_dssp             HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred             HHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence            34555555 4679999999999999999999999999999998765322234433

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=85.02  E-value=0.86  Score=35.56  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=40.7

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSI  458 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~  458 (473)
                      ..++.++...+++|..++|+.++++..-+...|...++.|+|.|....
T Consensus        23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~   70 (109)
T 1sfx_A           23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE   70 (109)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence            345555555688999999999999999999999999999999986543

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=84.80  E-value=1.4  Score=38.35  Aligned_cols=44  Identities=11%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..++|+.+++|..-+..+|...++.|.|.|
T Consensus        20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~   63 (171)
T 2ia0_A           20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIER   63 (171)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence            57888888899999999999999999999999999999999975

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=84.79  E-value=1.5  Score=36.21  Aligned_cols=50  Identities=6%  Similarity=0.030  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ..++..+..+....+.+|..++|+.++++..-....|...|+.|+|.|+.
T Consensus        16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~   65 (139)
T 2x4h_A           16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE   65 (139)
T ss_dssp             HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence            45566666666667889999999999999999999999999999999876

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=84.74  E-value=0.71  Score=36.78  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=40.9

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      +++.++. .+.+|..|+|+.+++|..-+...|...++.|+|.+.......+|+.
T Consensus        29 ~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l   81 (108)
T 2kko_A           29 QILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRI   81 (108)
T ss_dssp             HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred             HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence            3444554 3789999999999999999999999999999998765322334443

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=84.53  E-value=0.9  Score=36.17  Aligned_cols=46  Identities=9%  Similarity=-0.055  Sum_probs=39.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ..++.++ ..+.+|..++|+.+++|..-....|...++.|+|.+...
T Consensus        24 ~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~   69 (114)
T 2oqg_A           24 WEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV   69 (114)
T ss_dssp             HHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence            4455566 457799999999999999999999999999999987543

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=83.96  E-value=1.2  Score=34.75  Aligned_cols=54  Identities=7%  Similarity=0.025  Sum_probs=42.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      -.++.++.. +.+|..|+++.+++|.......|...++.|+|.+........|..
T Consensus        26 ~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l   79 (102)
T 3pqk_A           26 LMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRL   79 (102)
T ss_dssp             HHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEE
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence            345555543 679999999999999999999999999999998765433344443

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=83.89  E-value=1.6  Score=38.76  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhCC-CCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         407 ASFVEKTYEIVSQNV-FVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~-~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ..++..+.+++...+ ..|..|+|+.+++|..-+..+|...|+.|.|.|+..
T Consensus         8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~~   59 (196)
T 3k2z_A            8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNG   59 (196)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC--
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecCC
Confidence            467777777776655 799999999999999999999999999999999854

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=83.17  E-value=1.2  Score=36.80  Aligned_cols=48  Identities=6%  Similarity=0.154  Sum_probs=35.2

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++.++...+++|..++|+.++++.+-+...|...++.|+|.|..+..
T Consensus        41 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~   88 (142)
T 3ech_A           41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPS   88 (142)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-----
T ss_pred             HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCC
Confidence            344555566899999999999999999999999999999999976554

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=82.55  E-value=1.5  Score=35.90  Aligned_cols=48  Identities=15%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++..+...+++|..++|+.++++..-+...|...++.|+|.|..+..
T Consensus        33 ~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~   80 (138)
T 3bpv_A           33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPE   80 (138)
T ss_dssp             HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCC
Confidence            345555567899999999999999999999999999999999865443

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=82.42  E-value=1.9  Score=35.73  Aligned_cols=48  Identities=6%  Similarity=-0.086  Sum_probs=40.2

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++.++...+++|..++|+.++++.+-+...|...+..|+|.|..+..
T Consensus        35 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~   82 (145)
T 3g3z_A           35 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQ   82 (145)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSS
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCC
Confidence            344445555789999999999999999999999999999999866544

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=82.29  E-value=1.9  Score=35.36  Aligned_cols=47  Identities=21%  Similarity=0.073  Sum_probs=38.8

Q ss_pred             HHHHhhCC--CCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccc
Q psy4132         414 YEIVSQNV--FVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEG  460 (473)
Q Consensus       414 ~~~~~~~~--~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g  460 (473)
                      +.++...+  ++|..++|+.++++..-+...|...++.|+|.|......
T Consensus        40 L~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d   88 (141)
T 3bro_A           40 IDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKD   88 (141)
T ss_dssp             HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred             HHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcC
Confidence            33444444  899999999999999999999999999999998654443

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=82.20  E-value=2.5  Score=32.84  Aligned_cols=50  Identities=6%  Similarity=0.030  Sum_probs=43.4

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      .-+++..++..+.. + ++..++|..++++...+...+...++.|+|.+..+
T Consensus         6 ~~eIi~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~   55 (95)
T 1r7j_A            6 KLEIIQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK   55 (95)
T ss_dssp             HHHHHHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred             HHHHHHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC
Confidence            34677788887764 4 99999999999999999999999999999998753

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=82.01  E-value=2.2  Score=35.10  Aligned_cols=47  Identities=15%  Similarity=-0.016  Sum_probs=40.3

Q ss_pred             HHHHH-hhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIV-SQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~-~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++.++ ...+++|..++|+.++++..-+...|...++.|+|.|..+..
T Consensus        42 iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~   89 (146)
T 2fbh_A           42 VLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAE   89 (146)
T ss_dssp             HHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBT
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCc
Confidence            44444 567899999999999999999999999999999999876544

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=81.59  E-value=2.1  Score=35.43  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=38.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ..++.++...+ +|..++|+.++++.+-+...|...++.|+|.|..+..
T Consensus        41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~   88 (146)
T 3tgn_A           41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSK   88 (146)
T ss_dssp             HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCC
Confidence            44566666677 9999999999999999999999999999999865433

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=81.10  E-value=1.9  Score=35.91  Aligned_cols=48  Identities=17%  Similarity=0.025  Sum_probs=40.7

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEG  460 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g  460 (473)
                      ++..+...+++|..++|+.++++..-+...|...+..|+|.|..+..+
T Consensus        45 iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d   92 (152)
T 3bj6_A           45 ILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEH   92 (152)
T ss_dssp             HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSS
T ss_pred             HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCccc
Confidence            444555667899999999999999999999999999999998765443

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=81.03  E-value=1.6  Score=36.52  Aligned_cols=47  Identities=9%  Similarity=0.024  Sum_probs=38.7

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++.++...+++|..++|+.++++..-+...|...+++|+|.|..+..
T Consensus        52 iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~   98 (153)
T 2pex_A           52 VMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAAS   98 (153)
T ss_dssp             HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred             HHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcc
Confidence            44455556889999999999999999999999999999999865443

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=80.98  E-value=2.4  Score=35.79  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++..+...+++|..++|+.++++..-+...|...++.|+|.|.....
T Consensus        54 iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~  100 (162)
T 2fa5_A           54 VITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGD  100 (162)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----
T ss_pred             HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCC
Confidence            44445557899999999999999999999999999999999865443

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=80.88  E-value=1.8  Score=35.46  Aligned_cols=48  Identities=10%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++..+...+++|..++|+.++++..-+...|...++.|+|.|..+..
T Consensus        35 ~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~   82 (142)
T 3bdd_A           35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD   82 (142)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred             HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence            344455556789999999999999999999999999999999876543

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=80.79  E-value=2.2  Score=35.33  Aligned_cols=48  Identities=10%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++..+...+++|..++|+.++++.+-+...|...|+.|+|.|..+..
T Consensus        44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~   91 (148)
T 3nrv_A           44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE   91 (148)
T ss_dssp             HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----
T ss_pred             HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCC
Confidence            455556667899999999999999999999999999999999875443

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=80.70  E-value=1.8  Score=36.07  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=39.3

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++.++...+++|..++|+.++++..-+...|...++.|+|.|.....
T Consensus        47 iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~   93 (150)
T 2rdp_A           47 ALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEH   93 (150)
T ss_dssp             HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCC
Confidence            34444445789999999999999999999999999999999865443

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=80.69  E-value=2  Score=35.52  Aligned_cols=40  Identities=13%  Similarity=-0.059  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         420 NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       420 ~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .+++|..++|+.+++|.+-+...|...++.|+|.|..+..
T Consensus        39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~   78 (152)
T 1ku9_A           39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKG   78 (152)
T ss_dssp             SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred             CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence            4789999999999999999999999999999999976444

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=80.65  E-value=1.8  Score=35.24  Aligned_cols=53  Identities=9%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcccccccc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYE  465 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~  465 (473)
                      +++.++.. +..+..++|+.+++|..-....|...++.|++.+.....+..|..
T Consensus        50 ~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l  102 (122)
T 1r1t_A           50 RLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQL  102 (122)
T ss_dssp             HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred             HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence            45555543 679999999999999999999999999999998765433344443

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=80.63  E-value=2.1  Score=33.28  Aligned_cols=48  Identities=17%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ...+..++...+++|..|+|+.+++|..-+...|...++.|+|.|...
T Consensus        24 ~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~   71 (109)
T 2d1h_A           24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT   71 (109)
T ss_dssp             HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence            344455555578899999999999999999999999999999998653

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=80.56  E-value=2.4  Score=35.09  Aligned_cols=48  Identities=13%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             HHHHHHhh-CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQ-NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~-~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++..+.. .+++|..++|+.++++..-+...|...++.|+|.|..+..
T Consensus        39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~   87 (147)
T 2hr3_A           39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ   87 (147)
T ss_dssp             HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred             HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCC
Confidence            34445555 7899999999999999999999999999999999875543

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=80.49  E-value=1.6  Score=36.10  Aligned_cols=47  Identities=15%  Similarity=0.022  Sum_probs=39.6

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++.++...+++|..++|+.++++..-+...|...++.|+|.|..+..
T Consensus        38 iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~   84 (145)
T 2a61_A           38 ILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPA   84 (145)
T ss_dssp             HHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred             HHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCC
Confidence            44444456789999999999999999999999999999999865443

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=80.44  E-value=2.2  Score=35.17  Aligned_cols=46  Identities=15%  Similarity=0.014  Sum_probs=39.1

Q ss_pred             HHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         413 TYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       413 ~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      ++.++. .+++|..++|+.++++.+-+...|...++.|+|.|..+..
T Consensus        42 iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~   87 (146)
T 2gxg_A           42 VLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDRE   87 (146)
T ss_dssp             HHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred             HHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCC
Confidence            344445 6889999999999999999999999999999999865443

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=80.22  E-value=2.3  Score=35.66  Aligned_cols=48  Identities=8%  Similarity=0.129  Sum_probs=39.3

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++.++...+++|..++|+.++++..-+...|...++.|+|.|.....
T Consensus        47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~   94 (155)
T 3cdh_A           47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAK   94 (155)
T ss_dssp             HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---
T ss_pred             HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC
Confidence            344555566789999999999999999999999999999999876543

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=80.17  E-value=2.1  Score=35.76  Aligned_cols=43  Identities=7%  Similarity=0.034  Sum_probs=38.0

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .++.++...+++|..++|+.++++..-+...|...|++|+|.|
T Consensus        45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r   87 (154)
T 2qww_A           45 AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK   87 (154)
T ss_dssp             HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence            3444555668899999999999999999999999999999999

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=80.05  E-value=1.3  Score=35.70  Aligned_cols=46  Identities=13%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      -+|+.++. .+.+|..|+|+.+++|..-+...|...++.|+|.+...
T Consensus        21 ~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~   66 (118)
T 3f6o_A           21 RAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ   66 (118)
T ss_dssp             HHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence            44555565 47899999999999999999999999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d2hthb1	129	b.55.1.12 (B:3-131) Vacuolar protein sorting prote	1e-34
d2caya1	130	b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sort	4e-18
d1xo5a_	180	a.39.1.5 (A:) Calcium- and integrin-binding protei	1e-16
d1xo5a_	180	a.39.1.5 (A:) Calcium- and integrin-binding protei	8e-06
d1u5tb1	94	a.4.5.54 (B:396-489) Vacuolar protein sorting-asso	2e-15
d1pvaa_	109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	1e-10
d1pvaa_	109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	0.001
d5pala_	109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	8e-10
d1auib_	165	a.39.1.5 (B:) Calcineurin regulatory subunit (B-ch	1e-09
d1auib_	165	a.39.1.5 (B:) Calcineurin regulatory subunit (B-ch	2e-07
d1g8ia_	187	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	2e-09
d1g8ia_	187	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	3e-05
d1rroa_	108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	2e-09
d2pvba_	107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	2e-09
d2pvba_	107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	0.002
d1fpwa_	190	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	3e-09
d1fpwa_	190	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	2e-05
d1fpwa_	190	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	3e-05
d1rwya_	109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	3e-09
d1bjfa_	181	a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId	2e-08
d1bjfa_	181	a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId	2e-05
d1dtla_	156	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-08
d2zfda1	183	a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {	3e-08
d2zfda1	183	a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {	2e-04
d1exra_	146	a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetr	3e-08
d1exra_	146	a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetr	2e-07
d1topa_	162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	3e-08
d1topa_	162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-05
d1omra_	201	a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId:	2e-07
d1omra_	201	a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId:	7e-04
d1jbaa_	189	a.39.1.5 (A:) Guanylate cyclase activating protein	3e-07
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	3e-07
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	3e-05
d2opoa1	81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	4e-07
d2obha1	141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	4e-07
d2obha1	141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	3e-06
d1tiza_	67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	5e-07
d1tiza_	67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	5e-04
d1c7va_	68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	5e-07
d1c7va_	68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	0.002
d1nyaa_	176	a.39.1.5 (A:) Calerythrin {Saccharopolyspora eryth	8e-07
d1nyaa_	176	a.39.1.5 (A:) Calerythrin {Saccharopolyspora eryth	3e-04
d2scpa_	174	a.39.1.5 (A:) Sarcoplasmic calcium-binding protein	9e-07
d2scpa_	174	a.39.1.5 (A:) Sarcoplasmic calcium-binding protein	6e-06
d2scpa_	174	a.39.1.5 (A:) Sarcoplasmic calcium-binding protein	7e-04
d1oqpa_	77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	1e-06
d1oqpa_	77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	0.002
d1avsa_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-06
d1k94a_	165	a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [Ta	3e-06
d1k94a_	165	a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [Ta	4e-04
d1lkja_	146	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	3e-06
d1lkja_	146	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	7e-06
d1hqva_	181	a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mous	3e-06
d1hqva_	181	a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mous	0.002
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	6e-06
d1jc2a_	75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	7e-06
d1jc2a_	75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.002
d1s6ja_	87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	9e-06
d1qxpa2	188	a.39.1.8 (A:515-702) Calpain large subunit, C-term	2e-05
d1qxpa2	188	a.39.1.8 (A:515-702) Calpain large subunit, C-term	0.002
d1tuza_	118	a.39.1.7 (A:) Diacylglycerol kinase alpha, N-termi	4e-05
d1fw4a_	65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	5e-05
d1c07a_	95	a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId:	5e-05
d1y1xa_	182	a.39.1.8 (A:) Programmed cell death 6 protein-like	5e-05
d1f54a_	77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	9e-05
d1wlza1	83	a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {H	1e-04
d2fcea1	61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	2e-04
d1df0a1	186	a.39.1.8 (A:515-700) Calpain large subunit, C-term	2e-04
d1df0a1	186	a.39.1.8 (A:515-700) Calpain large subunit, C-term	0.003
d2pq3a1	73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	3e-04
d1ij5a_	321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	5e-04
d1ij5a_	321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	0.001
d1cb1a_	78	a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [Tax	7e-04
d1s6ca_	178	a.39.1.5 (A:) Kchip1, Kv4 potassium channel-intera	0.001
d2zkmx1	170	a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human	0.001
d2zkmx1	170	a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human	0.002
d1fi6a_	92	a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId:	0.001
d1juoa_	172	a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId:	0.002
d1qv0a_	189	a.39.1.5 (A:) Calcium-regulated photoprotein {Hydr	0.002
d1qv0a_	189	a.39.1.5 (A:) Calcium-regulated photoprotein {Hydr	0.002
d1snla_	99	a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo	0.002
d1s6ia_	182	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	0.002
d1a4pa_	92	a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapien	0.003
d1yuta1	98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	0.003
d3c1va1	93	a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sa	0.003

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-34
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 3   RFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW----QKDITLCLA 58
           RF + S  L  +E+ V++   VR+YDGE K +F  G L+L++HRL W      +  + + 
Sbjct: 1   RFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAIL 60

Query: 59  LSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFL 118
           LS I    E+A  +       KI+++L  A P K  GP  +S   Y+KLSF+E  Q EF 
Sbjct: 61  LSQIVFIEEQAAGIG---KSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFY 117

Query: 119 DALKSTVDAKIW 130
             L   +  + W
Sbjct: 118 RRLSEEMTQRRW 129

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (193), Expect = 4e-18
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 25/142 (17%)

Query: 1   MDRFEYCSFE------LSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFW---- 49
           M+ + Y          L   E  +    +V LY G++K  Q QRG + LTS R+ +    
Sbjct: 1   MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60

Query: 50  -QKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLS 108
                +L L L  +      +     LT   ++IL+                   +V+LS
Sbjct: 61  KPTQNSLGLELDDLAYVNYSSGF---LTRSPRLILFFKDPSSSTE----------FVQLS 107

Query: 109 FREGIQNEFLDALKSTVDAKIW 130
           FR+     F  A +  ++  + 
Sbjct: 108 FRKSDGVLFSQATERALENILT 129

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Length = 180

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-16
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 238 DIRRLGKRFRKLD--------LDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-RNGE 288
           +I    +RF +L               +  ++ +SLPEL+ NP  +R+  +F        
Sbjct: 15  EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 74

Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAAL 338
           + F++F+  +S FS     + K  +AFRI+D D+D    +   + L+  L
Sbjct: 75  LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCL 124

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Length = 180

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 8e-06
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
            I    S       ++F++F  ++    +         +    FR  D D+ G L+ ++ 
Sbjct: 61  RICRVFSTSPAKDSLSFEDFLDLLS---VFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 117

Query: 263 MS-------------LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                          L   +   L+  +++  D DR+G ++  EF   +S+
Sbjct: 118 SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 168

>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 322 NDDDYYQALGNELIAALIEPLTSAGGT-----MLLTDAYCRINRAR--GLELLSPEDLLN 374
           N + +   +  E+    +              + L D Y   N++   G  L+SP ++  
Sbjct: 8   NKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMRE 67

Query: 375 SCLALDKLPDSPIYLKTYSSGVKVLQ 400
           +C   + L  + + L   +  +  + 
Sbjct: 68  ACERFEHLGLNELKLVKVNKRILCVT 93

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           +I +       +G  N ++F ++VG   +      D++++   F+ +D D SG +  +E 
Sbjct: 10  DIKKALDAVKAEGSFNHKKFFALVG---LKAMSANDVKKV---FKAIDADASGFIEEEEL 63

Query: 262 ------FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                 F +      +   +  +   D+D +G++   EF   V +
Sbjct: 64  KFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHE 108

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 250 DLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR 307
            +   G+ +  +F +L  L+      V++V    D D +G ++ +E    +  F+  G  
Sbjct: 17  AVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRD 76

Query: 308 ESK--LKFAFRIYDIDND 323
            +    K   +  D D D
Sbjct: 77  LTDAETKAFLKAADKDGD 94

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

 Score = 53.8 bits (129), Expect = 8e-10
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
           +I +  S     G  +++ F  +VG   +  K    ++ +   F  LD D SG +  +E 
Sbjct: 10  DINKAISAFKDPGTFDYKRFFHLVG---LKGKTDAQVKEV---FEILDKDQSGFIEEEEL 63

Query: 262 ------FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                 F +      +   + ++   D D +G++   EF + V+Q
Sbjct: 64  KGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQ 108

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Length = 165

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 73/120 (60%), Positives = 89/120 (74%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
           +I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+G
Sbjct: 14  EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEG 73

Query: 298 VSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCR 357
           VSQFSVKGD+E KL+FAFRIYD+D D         +++  ++           + D    
Sbjct: 74  VSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTII 133

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Length = 165

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
           KD DG+I+F+EFC++VG  DIHKKMVVD+
Sbjct: 137 KDGDGRISFEEFCAVVGGLDIHKKMVVDV 165

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
           ++++  K F K     SG L    F  +     P          V ++FDE+++G ++F 
Sbjct: 23  EVQQWYKGFIKDC--PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFS 80

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           EFIQ +S  S +G  + KL++AF++YD+DND 
Sbjct: 81  EFIQALSVTS-RGTLDEKLRWAFKLYDLDNDG 111

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
           +++DG+I F EF   +  T           +L   F+  DLDN G ++ +E         
Sbjct: 71  ENKDGRIEFSEFIQALSVTSRGTLD----EKLRWAFKLYDLDNDGYITRNEMLDIVDAIY 126

Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                   +   E      V R+  + D++ +G++  +EF +G   
Sbjct: 127 QMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 172

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           +I               Q+F    G   + K     ++ +   FR +D D SG L  DE 
Sbjct: 10  DIAAALQECQDPDTFEPQKFFQTSG---LSKMSASQVKDI---FRFIDNDQSGYLDGDEL 63

Query: 263 MS-LPELQQNPL------VQRVIDIFDEDRNGEVDFKEFIQ 296
              L + Q +         + ++D  D D +G++   EF +
Sbjct: 64  KYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQE 104

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           ++    +          +EF + VG   +  K + D++   K F  +D D SG +  DE 
Sbjct: 9   DVAAALAACSAADSFKHKEFFAKVG---LASKSLDDVK---KAFYVIDQDKSGFIEEDEL 62

Query: 263 MSL-------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
                          +   +  +   D+D +G +   EF  
Sbjct: 63  KLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAA 103

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
           +D+ G I   E    + N     + + D           D D  G + +DEF ++
Sbjct: 51  QDKSGFIEEDELKLFLQNFSPSARALTD-AETKAFLADGDKDGDGMIGVDEFAAM 104

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I++  K F +     SG L+ ++F+       P          +  +FD+D NG + F+
Sbjct: 26  EIQQWHKGFLRDC--PSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFE 83

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EFI  +S  S +G  E KL +AF +YD+++D
Sbjct: 84  EFITVLSTTS-RGTLEEKLSWAFELYDLNHD 113

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 27/125 (21%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
           KD +G I+F+EF +++  T           +L   F   DL++ G ++ DE         
Sbjct: 74  KDNNGFIHFEEFITVLSTTSRGTLE----EKLSWAFELYDLNHDGYITFDEMLTIVASVY 129

Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
                   ++  E      V+++  + D++ +G +   EF +G          +  +  A
Sbjct: 130 KMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK-------VDPSIIGA 182

Query: 315 FRIYD 319
             +YD
Sbjct: 183 LNLYD 187

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 185 EMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI----- 239
           E + +    S   +  +     +  + + DG I F E  +IV +       +V +     
Sbjct: 84  EFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEA 143

Query: 240 ---RRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 282
               R+ K F+ +D +  G +++DEF      + +P +   ++++D
Sbjct: 144 TPEMRVKKIFKLMDKNEDGYITLDEFREG--SKVDPSIIGALNLYD 187

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           +I +           + ++F  +VG   + KK   D++++   F  LD D SG +  DE 
Sbjct: 10  DIKKAIGAFTAADSFDHKKFFQMVG---LKKKSADDVKKV---FHILDKDKSGFIEEDEL 63

Query: 263 MSL-------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
            S+                + ++   D+D +G++  +EF   V++
Sbjct: 64  GSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAE 108

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I+   K F  L    SG LS++EF        P    +   + V   FD + +G +DF+
Sbjct: 22  EIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFR 79

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           EFI  +S  S +G  E KLK+AF +YD+D +
Sbjct: 80  EFIIALSVTS-RGKLEQKLKWAFSMYDLDGN 109

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 22/147 (14%)

Query: 172 AFKDLNQ--LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNT 229
            F        +SM +              ++  E      + + DG I+F+EF   +   
Sbjct: 29  GFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIAL--- 85

Query: 230 DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----------------MSLPELQQNPL 273
                     ++L   F   DLD +G +S  E                 M   E      
Sbjct: 86  -SVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKR 144

Query: 274 VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
            +++    D +R+G++  +EFI+G   
Sbjct: 145 TEKIFRQMDTNRDGKLSLEEFIRGAKS 171

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 156

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 19/118 (16%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
            KE+ ++ + +       + +   D+ ++D  G ++F EF  ++  +            L
Sbjct: 34  TKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEEL 93

Query: 243 GKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
              FR  D +  G + ++E   + +     +    ++ ++   D++ +G +D+ EF++
Sbjct: 94  SDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 151

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 183

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 238 DIRRLGKRFRKLDLD--NSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           +I  L + F+K+     + G ++ +EF   +     +++    RV D+FD   NG + F+
Sbjct: 15  EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFE 74

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT 352
           EF + +S F      + K+ F+F++YD+       +    +++ A +          ++ 
Sbjct: 75  EFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIE 134

Query: 353 DAYCRI 358
           D   + 
Sbjct: 135 DIIDKT 140

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 183

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           +   +G + F+EF   +     +  +   I      F+  DL   G +   E        
Sbjct: 64  DTKHNGILGFEEFARALSVFHPNAPIDDKIH---FSFQLYDLKQQGFIERQEVKQMVVAT 120

Query: 263 -----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                M+L +     ++ +  +  D   +G++D +E+   V +
Sbjct: 121 LAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 163

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
            I    + F   D D  G ++  E  ++            +Q +I+  D D NG +DF E
Sbjct: 7   QIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 66

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+  +++   + D E +L  AF+++D D +
Sbjct: 67  FLSLMARKMKEQDSEEELIEAFKVFDRDGN 96

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
            KE+  + +++       + +   ++ + D +G I+F EF S++      +    ++   
Sbjct: 28  TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEA 87

Query: 243 GKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
            K F   D D +G +S  E      +L E   +  V  +I   D D +G ++++EF++
Sbjct: 88  FKVF---DRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVR 142

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
            KE+  + + +       + +   ++ ++D  G I+F+EF  ++               L
Sbjct: 39  TKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEEL 98

Query: 243 GKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
              FR  D +  G + I+E      +  E      ++ ++   D++ +G +DF EF++
Sbjct: 99  ANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI----FDEDRNGEVDFKE 293
            I      F   D D  G +S  E  ++  +      +  +D      DED +G +DF+E
Sbjct: 18  MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77

Query: 294 FIQGVSQFSV---KGDRESKLKFAFRIYDIDND 323
           F+  + +      KG  E +L   FRI+D + D
Sbjct: 78  FLVMMVRQMKEDAKGKSEEELANCFRIFDKNAD 110

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
           ++    + F  L    SG ++  EF +      PE       Q V   FD + +G +DFK
Sbjct: 26  ELSSWYQSF--LKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFK 83

Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
           E++  +   S  G    KL++AF +YD+D + 
Sbjct: 84  EYVIALHMTS-AGKTNQKLEWAFSLYDVDGNG 114

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
           + + DG ++F+E+   +  T   K      ++L   F   D+D +G +S +E        
Sbjct: 73  DANSDGTLDFKEYVIALHMTSAGKTN----QKLEWAFSLYDVDGNGTISKNEVLEIVTAI 128

Query: 263 -----------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                      +   E       +++   F +  + ++  KEFI+G   
Sbjct: 129 FKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLA 177

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Length = 189

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDF 291
              ++   K+F +     SG L + EF    ++  N      V+ +   FD + +  +DF
Sbjct: 20  AAQLQEWYKKFLEEC--PSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDF 77

Query: 292 KEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
            E++  +    ++G  E KLK+ F+IYD D +
Sbjct: 78  LEYVAAL-NLVLRGTLEHKLKWTFKIYDKDRN 108

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 24/112 (21%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNP--------LVQRVIDIFDED 284
           I R    F  LD++++G +S+DE +       +  L   P         V+         
Sbjct: 11  IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 70

Query: 285 RNGEVDFKEFIQGVSQFSVKGDRESK----------LKFAFRIYDIDNDDDY 326
              E D+  +I+G  + +     +                F I D D +   
Sbjct: 71  YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAI 122

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 18/149 (12%), Positives = 44/149 (29%), Gaps = 11/149 (7%)

Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGN---- 228
             ++    S        +     K      E     +      + ++  +          
Sbjct: 31  LDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATD 90

Query: 229 ---TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIF 281
                   +  +        F  +D D +GA+++DE+     +   +Q +   +    + 
Sbjct: 91  ELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVC 150

Query: 282 DEDRNGEVDFKEFIQGVSQFSVKGDRESK 310
           D D +G++D  E  +    F    D   +
Sbjct: 151 DIDESGQLDVDEMTRQHLGFWYTMDPACE 179

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
           DI    + F++ D +  G +S  E     +   +     V+R++   D D +G + F EF
Sbjct: 4   DIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEF 63

Query: 295 IQ 296
             
Sbjct: 64  TD 65

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
            KE+    + +  +    + +    + +K+  GK+NF +F +++      K    +I + 
Sbjct: 25  VKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKA 84

Query: 243 GKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
              F+  D D +G +S      + +     L    +Q +ID  D D +GEV  +EF++
Sbjct: 85  ---FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 139

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKE 293
             + + + F   D D +G + + E      +L    +   ++++I   D++  G+++F +
Sbjct: 4   QKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGD 63

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+  ++Q   + D + ++  AF+++D D  
Sbjct: 64  FLTVMTQKMSEKDTKEEILKAFKLFDDDET 93

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 246 FRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
           F K D +  G LS+DEF  +            + +  +  D D NGE++  EF   + +
Sbjct: 7   FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
           K++DGK++  EF  +      +         + K F ++D+D +G L+ DEF S 
Sbjct: 12  KNKDGKLSLDEFREVALAFSPYFTQ----EDIVKFFEEIDVDGNGELNADEFTSC 62

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
           F+  D +  G +  DEF   + ++ + PL    V+  +   DED NG +D  EF+  + +
Sbjct: 8   FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKK 67

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
            + DG I+F EF  I+           ++       ++ D D +G + I EFM L
Sbjct: 13  ANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFMDL 64

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Length = 176

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 46.9 bits (110), Expect = 8e-07
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 8/143 (5%)

Query: 165 TSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCS 224
             ++     + + +         E+    +           E       DG +  ++F  
Sbjct: 25  ERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG--VGSDGSLTEEQFIR 82

Query: 225 IVGNTDIHKKMVVDIR----RLGKRFRKLDLDNSGALSIDEFMSLPELQQNP--LVQRVI 278
           +  N    +      R     +       D +  G ++ DEF +                
Sbjct: 83  VTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAF 142

Query: 279 DIFDEDRNGEVDFKEFIQGVSQF 301
           +  D + NGE+   E +  V  F
Sbjct: 143 NQVDTNGNGELSLDELLTAVRDF 165

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Length = 176

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 26/116 (22%)

Query: 240 RRLGKRFRKLDLDNSGALSIDEF--------------MSLPELQQ-----NPLVQRVIDI 280
            RL KRF + D D +GAL   +F                  E+Q        L   +   
Sbjct: 7   DRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE 66

Query: 281 FDEDRNGEVDFKEFIQGVSQFSV-------KGDRESKLKFAFRIYDIDNDDDYYQA 329
                +G +  ++FI+                     +K    + D + D      
Sbjct: 67  AGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Length = 174

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 4/133 (3%)

Query: 173 FKDLNQLMS-MAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI 231
             D   +    AKE    +++    + +  G      +       I+   F + +     
Sbjct: 25  RMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVK 84

Query: 232 HKKMV-VDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQNPLVQRVIDIFDEDRNGE 288
           + +   V    L   FR +D +    +S DE+     +      +     D  D + +G 
Sbjct: 85  NPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGL 144

Query: 289 VDFKEFIQGVSQF 301
           +  +EF+   S F
Sbjct: 145 LSLEEFVIAGSDF 157

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Length = 174

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 19/108 (17%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPEL---------------QQNPLVQRVIDIFD 282
            ++++   F ++D D  GA++  +F S+ E                  +        +  
Sbjct: 4   WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTA 63

Query: 283 EDRNGEVDFKEFIQGVSQFSVKGDRES----KLKFAFRIYDIDNDDDY 326
                 +D   FI  + +     + +S     L   FR  D + D++ 
Sbjct: 64  VAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNI 111

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Length = 174

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 19/129 (14%)

Query: 211 KDRDGKINFQEFCSIV-------GNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
            D+DG I   +F S+             H K+++D            +     +    F+
Sbjct: 17  FDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFI 76

Query: 264 S---------LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
           +           +      +       D + +  +   E+        +    ++    +
Sbjct: 77  NSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL---DKTMAPAS 133

Query: 315 FRIYDIDND 323
           F   D +ND
Sbjct: 134 FDAIDTNND 142

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 241 RLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
            + K FR  D DNSG ++I +   + +     L    +Q +I   D + + E+D  EFI+
Sbjct: 10  EILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 69

Query: 297 GVSQFSV 303
            + + S+
Sbjct: 70  IMKKTSL 76

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
            D  G I  ++   +      +    +    L +   + D ++   +  DEF+ +
Sbjct: 20  DDNSGTITIKDLRRVAKELGEN----LTEEELQEMIAEADRNDDNEIDEDEFIRI 70

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
            I      F   D D  G +S  E  ++  +         +  +I+  DED +G +DF+E
Sbjct: 12  MIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 71

Query: 294 FIQ 296
           F+ 
Sbjct: 72  FLV 74

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Length = 165

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQ 269
           +D  GK+ F  F  +    +  K+           F  +D D SG +   E   ++  + 
Sbjct: 51  RDHTGKMGFNAFKELWAALNAWKEN----------FMTVDQDGSGTVEHHELRQAIGLMG 100

Query: 270 QNPLVQRVIDIFDE-DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
                Q +  I     +NG + F +++           +   L   FR  D    
Sbjct: 101 YRLSPQTLTTIVKRYSKNGRIFFDDYVACCV-------KLRALTDFFRKRDHLQQ 148

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Length = 165

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
            ++G+I F ++              V +R L   FRK D    G+     D+F+  
Sbjct: 116 SKNGRIFFDDYV----------ACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQG 161

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI----FDEDRNGEVDFKE 293
            I    + F   D DN+G++S  E  ++         +  ++      D D N +++F E
Sbjct: 8   QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSE 67

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
           F+  +S+     D E +L  AF+++D + D
Sbjct: 68  FLALMSRQLKSNDSEQELLEAFKVFDKNGD 97

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
           + E+  + +++       +     ++ + D + +I F EF +++           ++   
Sbjct: 29  SSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEA 88

Query: 243 GKRFRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDE--DRNGEVDFKEFIQ 296
              F+  D +  G +S  E    L  + +      V D+  E  D +GE++ ++F  
Sbjct: 89  ---FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFAA 142

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 180 MSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
           M    E+ +       ++ ++  +I     ++   G+I F +F           +  + +
Sbjct: 102 MIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI----------QGCIVL 151

Query: 240 RRLGKRFRKLDLDNSGA--LSIDEFMSL 265
           +RL   FR+ D D  G   +S ++++S+
Sbjct: 152 QRLTDIFRRYDTDQDGWIQVSYEQYLSM 179

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 260 DEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYD 319
                      +     +I  FD    G++ F +FIQG            +L   FR YD
Sbjct: 110 QALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI-------VLQRLTDIFRRYD 162

Query: 320 IDND 323
            D D
Sbjct: 163 TDQD 166

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           FR  D +  G + ++E      +  E      ++ ++   D++ +G +D+ EF++
Sbjct: 21  FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
           FR  D +  G + I+E   +       +    ++ ++   D++ +G +DF EF++
Sbjct: 15  FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK 69

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
           K+ DG I+ +E   I+  T  H    V    +    +  D +N G +  DEF+ +
Sbjct: 20  KNADGFIDIEELGEILRATGEH----VIEEDIEDLMKDSDKNNDGRIDFDEFLKM 70

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 41.9 bits (98), Expect = 9e-06
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
           +I  L + F+ +D DNSG ++ DE     +   + L    ++ ++D  D D++G +D+ E
Sbjct: 21  EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80

Query: 294 FIQ 296
           FI 
Sbjct: 81  FIA 83

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 188

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 38/189 (20%)

Query: 154 IERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSN--- 210
           I+ N+ +++  +   I++ FK L   +  A + +EIS      I+NR     +D      
Sbjct: 3   IQANLPDEKVLSEEEIDDNFKTLFSKL--AGDDMEISVKELQTILNRIISKHKDLRTNGF 60

Query: 211 -------------KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGAL 257
                        +D +GK+   EF  +      +  +          FRK DLD SG++
Sbjct: 61  SLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTI----------FRKFDLDKSGSM 110

Query: 258 SIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
           S  E    +     +    + +VI     D    +DF  F++ +        R   L   
Sbjct: 111 SAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLV-------RLEILFKI 163

Query: 315 FRIYDIDND 323
           F+  D +N 
Sbjct: 164 FKQLDPENT 172

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 188

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 186 MVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR 245
           +      +  ++      I    ++ +    I+F  F           + +V +  L K 
Sbjct: 119 IEAAGFKLPCQLHQ---VIVARFADDE--LIIDFDNFV----------RCLVRLEILFKI 163

Query: 246 FRKLDLDNSGA--LSIDEFMSL 265
           F++LD +N+G   L +  ++S 
Sbjct: 164 FKQLDPENTGTIQLDLISWLSF 185

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 21/117 (17%)

Query: 215 GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDL---DNSGALSIDEFMSL------ 265
           G I+  +F  +    +   K    +  + K F   ++       A+  + F         
Sbjct: 6   GLISPSDFAQLQKYMEYSTK---KVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLE 62

Query: 266 PELQQNPLVQRVIDIFDEDR--------NGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
            +     L   +   F+              V   +     S     G  E KL+++
Sbjct: 63  VDNVPRHLSLALFQSFETGHCLNETNVTKDVVCLNDVSCYFSLLE-GGRPEDKLEWS 118

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 246 FRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
           FR  D D +G +S  E      +L E   +  V  +I   D D +G+V+++EF+Q
Sbjct: 9   FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 63

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP--LVQRVIDIFDEDRNGEVDFKEFI 295
           +  +  + F K D D  G +S  E   +      P  L+  +  + D    G++   +F 
Sbjct: 8   EKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFA 67

Query: 296 Q 296
            
Sbjct: 68  L 68

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]} Length = 182

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 10/88 (11%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 180 MSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
              + E+     +   ++  +  +      ++ R G + F ++           ++ + +
Sbjct: 100 RLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYV----------ELSIFV 149

Query: 240 RRLGKRFRKLDLDNSGALSI--DEFMSL 265
            R+   F   D + +G ++   D F+  
Sbjct: 150 CRVRNVFAFYDRERTGQVTFTFDTFIGG 177

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (90), Expect = 9e-05
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
            I    + F   D DN+G++S  E  ++            V  +++  D D N +++F E
Sbjct: 8   QIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSE 67

Query: 294 FIQ 296
           F+ 
Sbjct: 68  FLA 70

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 231 IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRN 286
           +HK +      + + F   D   +  +S +EF ++   +   L      R+ +    +  
Sbjct: 11  LHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK 70

Query: 287 GEVDFKEFIQGVS 299
           G + + +F+   S
Sbjct: 71  GRLKYPDFLSRFS 83

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 244 KRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
           K F+  D +++G +S+ +   +       L    V  ++   + D NGE+D+K+FI+
Sbjct: 5   KAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 61

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 186

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 20/116 (17%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLPE 267
           +D  GK+  +EF  +      ++K+          +R++D+D SG ++  E    +    
Sbjct: 72  EDGSGKLGLKEFYILWTKIQKYQKI----------YREIDVDRSGTMNSYEMRKALEEAG 121

Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
            +    + +VI     D    +DF  F++ +        R   L   F+  D +N 
Sbjct: 122 FKLPCQLHQVIVARFADDELIIDFDNFVRCLV-------RLEILFKIFKQLDPENT 170

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 186

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSID--EFMSL 265
             D +  I+F  F           + +V +  L K F++LD +N+G + +D   ++S 
Sbjct: 136 FADDELIIDFDNFV----------RCLVRLEILFKIFKQLDPENTGTIQLDLISWLSF 183

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
            I    + F   D D  G ++  E  ++            +Q +I+  D D NG +DF E
Sbjct: 6   QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 65

Query: 294 FIQ 296
           F+ 
Sbjct: 66  FLT 68

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 218 NFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--- 273
              E  S       +  + + +  L   +   D D SG LS +E    L +         
Sbjct: 231 YADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARK 290

Query: 274 -VQRVIDIFDEDRNGEVDFKEFIQ 296
             +    + D D +  + ++EF+ 
Sbjct: 291 KFEHQFSVVDVDDSKSLSYQEFVM 314

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
            D+ G+++ +E   ++ +  I +            F  +D+D+S +LS  EF+ L
Sbjct: 264 FDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ---FSVVDVDDSKSLSYQEFVML 315

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 246 FRKLDL--DNSGALSIDEF-----MSLPELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQ 296
           F K      +   LS +E         P L + P  +  +    D++ +GEV F+EF  
Sbjct: 13  FEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQV 71

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 178

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 20/107 (18%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM------ 263
           +  + G + F++F + +              +L   F   D++  G ++ +E M      
Sbjct: 61  DTTQTGSVKFEDFVTAL----SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAI 116

Query: 264 ----------SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
                      L E      V       D++++G V   EF++   +
Sbjct: 117 YDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 163

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PEL 268
             + +GKI  + F  +       K++   +        K D  N        + S    L
Sbjct: 17  QLNSEGKIPVKNFFQMF--PADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSL 74

Query: 269 QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
              P +  +   +       +  +   + ++Q
Sbjct: 75  CPRPEIDEIFTSYHAKAKPYMTKEHLTKFINQ 106

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 26/158 (16%)

Query: 248 KLDLDNSGALSIDEFMSLPELQQNPL------VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
           K+ L++ G + +  F  +    +  +              D     +     +   +   
Sbjct: 15  KMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSL 74

Query: 302 SVKGDRESKLKFAFRIYDIDND-----DDYYQALGNE----LIAALIEPLTSAGGTMLLT 352
                   ++   F  Y          +   + +  +     + +L+ P         L 
Sbjct: 75  C----PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLI 130

Query: 353 DAYCRINRARGLELLSPEDLL-------NSCLALDKLP 383
           D Y           LSPE ++       NS LA DKL 
Sbjct: 131 DKYEPSGINAQRGQLSPEGMVWFLCGPENSVLAQDKLL 168

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDRNGEVDFKEFI 295
             +    +F+ +  D +G +            + P+  +  + ++ D D++G +   EF 
Sbjct: 7   QRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFC 66

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 208 DSNKDRDGKINFQEFCSIVGNTDI-HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
            +   +DG+I+  E    +  + I       ++         LD D SG  ++       
Sbjct: 14  AAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSG--TMGFNEFKE 71

Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDY 326
                   ++    FD DR+G VD +E  + ++    +      +    + Y  +    +
Sbjct: 72  LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFR-LSPQAVNSIAKRYSTNGKITF 130

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Length = 189

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPLVQRVIDIFDE--------D 284
           I+R    F  LD++ +G +++DE +S        +L+  P   +   +  E        +
Sbjct: 13  IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 72

Query: 285 RNGEVDFKEFIQGVSQFSV----------KGDRESKLKFAFRIYDIDNDDDYYQALGNEL 334
              E+ F +F+ G  Q +                      F I+D D             
Sbjct: 73  YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 132

Query: 335 IAALIEPLTSAGGTMLLTDA 354
                   +           
Sbjct: 133 GKISGISPSQEDCEATFRHC 152

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Length = 189

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 14/149 (9%)

Query: 175 DLNQLMSMAKEMVEISKNISNKIINRQGEITEDD---SNKDRDGKINFQEFCSIVGNTDI 231
            L++++S A + +      + +   R     E        +   +I F +F         
Sbjct: 32  TLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLAT 91

Query: 232 HKKMVVD-------IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDI 280
            +                   F   D D SG +++DE+ +  ++          +     
Sbjct: 92  SELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRH 151

Query: 281 FDEDRNGEVDFKEFIQGVSQFSVKGDRES 309
            D D  G++D  E  +    F    D E+
Sbjct: 152 CDLDNAGDLDVDEMTRQHLGFWYTLDPEA 180

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
           E  +       + K  F          DI+   V+D + L   F K         + ++ 
Sbjct: 6   EELDGLDPNRFNPKTFFILH-------DINSDGVLDEQELEALFTKELEKVYDPKNEEDD 58

Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
           M   E ++  + + V+   D +++  V  +EF+    +
Sbjct: 59  MREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR 96

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 182

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFK----E 293
           +I  L + F+ +D DNSG ++ DE     +   + L++  I    +  + +        E
Sbjct: 8   EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGE 67

Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
           FI        K +RE  L  AF  +D D 
Sbjct: 68  FIAATVHL-NKLEREENLVSAFSYFDKDG 95

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Length = 92

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDRNGE 288
            +  +   F K    + G L+ ++   L            +    V +++   D+ R+G+
Sbjct: 7   AMETMMFTFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGK 65

Query: 289 VDFKEFIQ 296
           V F+ F  
Sbjct: 66  VGFQSFFS 73

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 252 DNSGALSIDEF------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG 305
               +LS++EF           L+    +   +   D +++ E+ F E+ + + + + + 
Sbjct: 28  GRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEI 87

Query: 306 DRESKLK 312
            ++  LK
Sbjct: 88  RKKKDLK 94

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 252 DNSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS 302
            +   L+  E   L          +       Q+++   D +R+ EVDF+E+   +S  +
Sbjct: 23  GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 82

Query: 303 V 303
           +
Sbjct: 83  M 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	100.0
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	99.98
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	99.69
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	99.68
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	99.67
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	99.66
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.62
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	99.62
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	99.6
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	99.6
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	99.59
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	99.59
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	99.59
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	99.58
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	99.58
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	99.58
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	99.57
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	99.56
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	99.55
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	99.55
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.54
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	99.53
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	99.53
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	99.52
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	99.52
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	99.52
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	99.51
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	99.5
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	99.5
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	99.49
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	99.49
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	99.48
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	99.48
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	99.46
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	99.45
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	99.45
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	99.44
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.42
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	99.4
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	99.39
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	99.38
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.38
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	99.37
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	99.37
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	99.37
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.35
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	99.33
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	99.33
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	99.33
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	99.29
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	99.29
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	99.28
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	99.25
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	99.24
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.24
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.22
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	99.21
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	99.2
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	99.18
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	99.18
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	99.15
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	99.13
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	99.13
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	99.12
d1u5tb1	94	Vacuolar protein sorting-associated protein VPS36	99.08
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.05
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	99.05
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	99.05
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	99.0
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	99.0
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	98.99
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	98.97
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.92
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	98.91
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	98.91
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	98.9
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.88
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	98.88
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	98.87
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	98.85
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	98.85
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	98.82
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	98.82
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	98.82
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	98.81
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	98.81
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.78
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	98.76
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.68
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	98.67
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	98.66
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	98.62
d1u5tb2	75	Vacuolar protein sorting-associated protein VPS36	98.59
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	98.59
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	98.58
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	98.57
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	98.57
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	98.56
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	98.54
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	98.49
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	98.49
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	98.49
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	98.46
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	98.45
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.45
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	98.45
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	98.42
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	98.41
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	98.39
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	98.38
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.36
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	98.36
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	98.35
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.31
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	98.3
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	98.28
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	98.21
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	98.2
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	98.2
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.15
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	98.15
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	98.11
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	98.06
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	98.05
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	98.04
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	98.0
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	97.99
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	97.92
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	97.9
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	97.85
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	97.72
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	97.7
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	97.61
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	97.54
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	97.46
d1tuza_	118	Diacylglycerol kinase alpha, N-terminal domain {Hu	97.45
d1xk4c1	83	Calcyclin (S100) {Human (Homo sapiens), s100a9 (mr	97.28
d1tuza_	118	Diacylglycerol kinase alpha, N-terminal domain {Hu	97.27
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	97.23
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	97.08
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	97.07
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	96.57
d1xk4c1	83	Calcyclin (S100) {Human (Homo sapiens), s100a9 (mr	96.5
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	96.39
d1sraa_	151	C-terminal (EC) domain of BM-40/SPARC/osteonectin	96.36
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	96.13
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	95.66
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	94.64
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	94.58
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.54
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	94.46
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	94.2
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	94.17
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	94.15
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	93.89
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	93.81
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	93.49
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	93.21
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	91.25
d1u5ta2	68	Vacuolar sorting protein SNF8 {Baker's yeast (Sacc	90.57
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	90.24
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	90.16
d1y5oa1	114	RNA polymerase II transcription factor B 73 kDa, T	90.0
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	89.19
d1sraa_	151	C-terminal (EC) domain of BM-40/SPARC/osteonectin	88.09
d1wi9a_	72	Hypothetical protein C20orf116 homolog {Mouse (Mus	87.61
d2htja1	73	P fimbrial regulatory protein PapI {Escherichia co	85.0
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	84.48
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	84.11
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	84.07
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	83.37
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	82.08

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-37  Score=262.74  Aligned_cols=125  Identities=37%  Similarity=0.615  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhHHHhhhhcccccCc
Q psy4132           3 RFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAVEEAKSMFNLTAG   78 (473)
Q Consensus         3 ~~~~~~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~~~~~~~~~~~~s   78 (473)
                      ||+||++.|++||.++++++||+||+|+.|+++++|+||||||||||+    +..|++|||.+|.+++.++++|   ++|
T Consensus         1 rf~~~~~ll~~~E~~l~~~~~V~lydG~~k~~~~~G~l~LTthRli~~~~~~~~~s~~lpl~~i~~~e~~~~~f---g~s   77 (129)
T d2hthb1           1 RFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGI---GKS   77 (129)
T ss_dssp             CCEECCSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECCTT---SSC
T ss_pred             CcEEEcCCCCCCcEEEEEeCCEEeecCCCcccccceEEEEEeceEEEecCCCCceEEEEEhHHceeeeEEcccc---cCC
Confidence            899999999999999999999999999999999999999999999999    7789999999999999999877   799


Q ss_pred             ccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhhh
Q psy4132          79 RKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIW  130 (473)
Q Consensus        79 ~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w  130 (473)
                      |||+++++++++++++||..+++..+||||||+||+++|+++|.++|.+|+|
T Consensus        78 ~ki~l~l~~~~~~~~~gp~~~s~~~~~KLsFk~GG~~eF~~~l~~al~~k~W  129 (129)
T d2hthb1          78 AKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRW  129 (129)
T ss_dssp             CEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHCCC
T ss_pred             ceEEEEEccCCcCCcCCCcCcCCceEEEEEECCCCHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=7.4e-34  Score=238.01  Aligned_cols=118  Identities=26%  Similarity=0.414  Sum_probs=106.6

Q ss_pred             CCccccc------CCCCCCCCceEEeecceeeecCCCC-CcccCcEEEeeeeeeeee-----cCccccccchhhhhHHHh
Q psy4132           1 MDRFEYC------SFELSPDESPVLKHSNVRLYDGENK-SQFQRGELILTSHRLFWQ-----KDITLCLALSYIQNAVEE   68 (473)
Q Consensus         1 ~~~~~~~------~~~l~~~E~~~~~~~~v~ly~g~~~-~~~~~G~l~LTshRii~~-----~~~~~~l~l~~v~~~~~~   68 (473)
                      |++|+|+      .|.|.+||.+|+.++||+||+|+.| +++++|+||||||||||+     ..+|++|||.+|.+++..
T Consensus         1 ~~~w~~~~~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~   80 (130)
T d2caya1           1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYS   80 (130)
T ss_dssp             GGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEE
T ss_pred             CcccchhhcccCCCeEccCCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEE
Confidence            8999997      4889999999999999999999999 589999999999999999     245899999999999988


Q ss_pred             hhhcccccCcccEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCCchHHHHHHHHHHhhhhhh
Q psy4132          69 AKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWT  131 (473)
Q Consensus        69 ~~~~~~~~~s~ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg~~~F~~~l~~~l~~~~w~  131 (473)
                      ++.|   ++||||+++++++          +++.++||||||+||+.+|++++..++.+.+|+
T Consensus        81 ~~~~---~ss~KI~l~l~~~----------~~~~~~vklsFr~gg~~~F~~~~~~~~~~~~~~  130 (130)
T d2caya1          81 SGFL---TRSPRLILFFKDP----------SSSTEFVQLSFRKSDGVLFSQATERALENILTE  130 (130)
T ss_dssp             CSSS---SSSCEEEEEESSC----------SSTTCCEEEEESSSCCHHHHHHHHHHHHHHHHC
T ss_pred             cccc---CCCCeEEEEeCCC----------CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhcC
Confidence            8644   8999999999752          235689999999999999999999999999885

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=139.56  Aligned_cols=145  Identities=55%  Similarity=0.798  Sum_probs=117.8

Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      ..+..++..|+++|+.+|.|++|+|+.+||+.+...+..+.+++++..+|.+++|.|+|+||+..+..........+.++
T Consensus         9 ~ft~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~EFl~~~~~~~~~~~~~~~~~   88 (165)
T d1auib_           9 HFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLR   88 (165)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCCSEECHHHHTTSHHHHTCTTHHHHHHHHCTTCSSSEEHHHHHHHHGGGCTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHhhhccCCHHHHHHHHHHccccchhhhhhhhhhhccccccchhhHHHHH
Confidence            34677889999999999999999999999999888888888999999999999999999999999999877778888999


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|+.+|.|++|.++..   ++..++......   .++.              ..+...+..++..+|.|+||.|+++||
T Consensus        89 ~~f~~~d~d~~g~Is~~---el~~~l~~~~~~---~~~~--------------~~~~~~~~~~~~~~D~~~dG~Is~~EF  148 (165)
T d1auib_          89 FAFRIYDMDKDGYISNG---ELFQVLKMMVGN---NLKD--------------TQLQQIVDKTIINADKDGDGRISFEEF  148 (165)
T ss_dssp             HHHHHHCTTCSSEECHH---HHHHHHHHHHTT---SSCH--------------HHHHHHHHHHHHHHCTTSSSSEEHHHH
T ss_pred             HHHHHhcccccccccHH---HHHHHHHHhccc---cCch--------------HHHHHHHHHHHHHcCCCCCCcEeHHHH
Confidence            99999999999766664   444444332111   1110              122344667899999999999999999


Q ss_pred             hccce
Q psy4132         393 SSGVK  397 (473)
Q Consensus       393 ~~~~~  397 (473)
                      ...+.
T Consensus       149 ~~i~~  153 (165)
T d1auib_         149 CAVVG  153 (165)
T ss_dssp             HHHHG
T ss_pred             HHHHh
Confidence            87665

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=99.68  E-value=7.5e-17  Score=138.55  Aligned_cols=137  Identities=21%  Similarity=0.292  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      +..+..+++++|..+|.+++|+|+.+||..+. ..+   ....+..++..+|.+++|.|+|.+|+..+..........+.
T Consensus         4 t~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~   83 (146)
T d1exra_           4 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEE   83 (146)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhccChHHH
Confidence            45677899999999999999999999999853 222   23347899999999999999999999998776555556788


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.|++|.+...                       ++...+.+...  .++++++.++|+.+|.|+||.|+++
T Consensus        84 ~~~~F~~~D~d~~G~i~~~-----------------------e~~~~l~~~~~--~~~~~~~~~i~~~~D~d~dG~i~~~  138 (146)
T d1exra_          84 LIEAFKVFDRDGNGLISAA-----------------------ELRHVMTNLGE--KLTDDEVDEMIREADIDGDGHINYE  138 (146)
T ss_dssp             HHHHHHHHSTTCSSCBCHH-----------------------HHHHHHHHTTC--CCCHHHHHHHHHHHCSSSSSSBCHH
T ss_pred             HHHHHHHhCCCCCCcCCHH-----------------------HHHHHHHHHhh--cCCHHHHHHHHHHhCCCCCCeEeHH
Confidence            9999999999999555553                       33333333222  5899999999999999999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      ||+..+
T Consensus       139 eF~~~l  144 (146)
T d1exra_         139 EFVRMM  144 (146)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.2e-16  Score=137.41  Aligned_cols=137  Identities=17%  Similarity=0.241  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      +.++.+++++|..+|.+++|+|+.+||..++ .++..+....++..++.+++|.|+|.+|+..+..........+.++.+
T Consensus         3 ~~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~a   82 (145)
T d2mysb_           3 ETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGA   82 (145)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHHHHHHHHHhccCceeechhhhhhhhcccccchHHHHHHH
Confidence            5678899999999999999999999999964 566566666788888889999999999999998877777788899999


Q ss_pred             hHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhc
Q psy4132         315 FRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSS  394 (473)
Q Consensus       315 F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~  394 (473)
                      |+.||.+++|.+...   ++..+|..                     .| ..+|++++..+++.+|.|++|.|+|.+|.+
T Consensus        83 F~~fD~~~~g~I~~~---el~~~l~~---------------------~g-~~ls~~e~~~~~~~~d~d~dg~I~y~eF~~  137 (145)
T d2mysb_          83 FKVLDPDGKGSIKKS---FLEELLTT---------------------GG-GRFTPEEIKNMWAAFPPDVAGNVDYKNICY  137 (145)
T ss_pred             HHhhhhcccchhhHH---HHHHHHHH---------------------cC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            999999999665553   33333332                     12 258999999999999999999999999987


Q ss_pred             cce
Q psy4132         395 GVK  397 (473)
Q Consensus       395 ~~~  397 (473)
                      .+.
T Consensus       138 ~l~  140 (145)
T d2mysb_         138 VIT  140 (145)
T ss_pred             Hhc
Confidence            653

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.66  E-value=1.2e-16  Score=136.97  Aligned_cols=136  Identities=15%  Similarity=0.249  Sum_probs=107.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      ++.++++++++|..+|.+++|.|+..||..+ ..++.++....+-. +..+++|.|+|.+|+.++.........++.++.
T Consensus         2 ~~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~el~~-~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~l~~   80 (142)
T d1wdcb_           2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTA-MLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRN   80 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHH-HHTTSSSCCCHHHHHHHHHHHTCSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCChHHHHHHHHHhhcCCCHHHHHH-HHHhccCccccccccccccccccccchhhhHHH
Confidence            4578899999999999999999999999995 44565554433333 335778999999999999988777888899999


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhh
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYS  393 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~  393 (473)
                      +|+.||+|++|.+..+   ++..+|.                    .. | ..+|++++.++++.+|.+ +|.|+|+||+
T Consensus        81 aF~~~D~d~~G~I~~~---el~~~l~--------------------~~-g-~~lt~~e~~~l~~~~d~~-~G~I~y~eF~  134 (142)
T d1wdcb_          81 AFAMFDEQETKKLNIE---YIKDLLE--------------------NM-G-DNFNKDEMRMTFKEAPVE-GGKFDYVKFT  134 (142)
T ss_dssp             HHHTTCTTCCSCEEHH---HHHHHHH--------------------HS-S-SCCCHHHHHHHHHHCCEE-TTEECHHHHH
T ss_pred             hhhhhcccCCCcccHH---HHHHHHH--------------------Hc-c-ccCCHHHHHHHHHHhCCC-CCEEcHHHHH
Confidence            9999999999655554   3333332                    21 2 258999999999999998 6999999998


Q ss_pred             ccce
Q psy4132         394 SGVK  397 (473)
Q Consensus       394 ~~~~  397 (473)
                      ..++
T Consensus       135 ~~l~  138 (142)
T d1wdcb_         135 AMIK  138 (142)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.8e-16  Score=133.10  Aligned_cols=135  Identities=18%  Similarity=0.291  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      +.+.++++++|..+|.+++|+|+..||..+.. .+   ....+..++..+|.+++|.|++.||+..+..........+.+
T Consensus         2 ~~~~~elk~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l   81 (141)
T d2obha1           2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEI   81 (141)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEeHHHHHHHHHhcCCchhHHHHHHHHHhhccCCCCeechHHHHHHHHHHHhhhccHHHH
Confidence            45678999999999999999999999998532 22   234578999999999999999999999998776555667889


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      +.+|..+|.+++|.+...                       ++...+.+. | ..++++++..+|+.+|.|+||.|+++|
T Consensus        82 ~~~f~~~d~~~~G~i~~~-----------------------el~~~l~~~-g-~~l~~~e~~~l~~~~D~d~dG~i~~~E  136 (141)
T d2obha1          82 LKAFKLFDDDETGKISFK-----------------------NLKRVAKEL-G-ENLTDEELQEMIDEADRDGDGEVSEQE  136 (141)
T ss_dssp             HHHHHHHCTTCSSSBCHH-----------------------HHHHHHHHT-T-CCCCHHHHHHHHHHHCTTSSSSBCHHH
T ss_pred             HHHHHHhcccCCCCccHH-----------------------HHHHHHHHh-C-CCCCHHHHHHHHHHHCCCCCCCEeHHH
Confidence            999999999998555553                       333333322 2 158999999999999999999999999


Q ss_pred             hhcc
Q psy4132         392 YSSG  395 (473)
Q Consensus       392 F~~~  395 (473)
                      |+..
T Consensus       137 F~~~  140 (141)
T d2obha1         137 FLRI  140 (141)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9864

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.3e-15  Score=130.84  Aligned_cols=136  Identities=22%  Similarity=0.346  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCH---HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~---~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ++.++.+++.+|+.+|.|++|+|+.+||+.++ ..+..+   .+..++..++.++.+.++|++|...+..........+.
T Consensus         5 s~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (146)
T d1lkja_           5 TEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQE   84 (146)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHHHHTCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHHHhhccccHHHH
Confidence            56788999999999999999999999999953 333332   46788888999999999999999999888777888899


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||+|++|.+..+++..++..+                        | ..++++++.++++.+| |+||.|+|+
T Consensus        85 ~~~aF~~~D~d~~G~I~~~el~~~l~~~------------------------g-~~~~~~~~~~~~~~~d-d~dG~I~~~  138 (146)
T d1lkja_          85 LLEAFKVFDKNGDGLISAAELKHVLTSI------------------------G-EKLTDAEVDDMLREVS-DGSGEINIQ  138 (146)
T ss_dssp             HHHHHHHHCSSSSCEEEHHHHHHHHHHH------------------------T-CSCCHHHHHHHHHHHC-CSSSEEEHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHc------------------------C-CcccHHHHHHHHHhcc-CCCCeEeHH
Confidence            9999999999999666654333333222                        2 1589999999999999 999999999


Q ss_pred             hhhccc
Q psy4132         391 TYSSGV  396 (473)
Q Consensus       391 EF~~~~  396 (473)
                      ||...+
T Consensus       139 eF~~~m  144 (146)
T d1lkja_         139 QFAALL  144 (146)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998654

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=2.5e-15  Score=134.15  Aligned_cols=143  Identities=23%  Similarity=0.365  Sum_probs=112.2

Q ss_pred             cchHHHHHHHHHHHhhCCC--CCCCccHHHHhcch---hccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         234 KMVVDIRRLGKRFRKLDLD--NSGALSIDEFMSLP---ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d--~~G~Is~~el~~l~---~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      .+..++..|++.|+.+|.+  ++|+|+.+||+.+.   ....++.++.+++.+|.+++|.|+|.||+.+++.+......+
T Consensus        11 Fs~~ei~~L~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~   90 (183)
T d2zfda1          11 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPID   90 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhcCCCCCHHHHHHHHHHccCCCCcCcHHHHHHHHHhhhccCcHH
Confidence            4567888999999999876  69999999998853   223355789999999999999999999999998887777889


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH----HHHHHHHhccCCC
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED----LLNSCLALDKLPD  384 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e----i~~~~~~~D~~~d  384 (473)
                      ++++.+|+.||.|++|.+...++.   .++...+...+..                  ++++.    +..+|+.+|.|+|
T Consensus        91 ~~~~~~F~~~D~d~~G~Is~~e~~---~~~~~~~~~~~~~------------------~~~~~~~~~~~~if~~~D~d~d  149 (183)
T d2zfda1          91 DKIHFSFQLYDLKQQGFIERQEVK---QMVVATLAESGMN------------------LKDTVIEDIIDKTFEEADTKHD  149 (183)
T ss_dssp             HHHHHHHHHHCTTSSSSEEHHHHH---HHHHHHHHHTTCC------------------CCHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHhhcccccCCCCCccHHHHH---HHHHHHHhhhhcc------------------cchHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999777775444   4443332222111                  33333    4567999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||...+.
T Consensus       150 G~Is~~EF~~~~~  162 (183)
T d2zfda1         150 GKIDKEEWRSLVL  162 (183)
T ss_dssp             SEECHHHHHHHHH
T ss_pred             CeEcHHHHHHHHH
Confidence            9999999987664

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=2.5e-15  Score=134.89  Aligned_cols=154  Identities=22%  Similarity=0.402  Sum_probs=113.5

Q ss_pred             cchHHHHHHHHHHHhhCCC-CCCCccHHHHhcchhccC----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         234 KMVVDIRRLGKRFRKLDLD-NSGALSIDEFMSLPELQQ----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d-~~G~Is~~el~~l~~~~~----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      .......+++.+|+.|+.+ ++|+|+.+||+.++....    ...++.+|+.+|.|++|.|+|.||+.++.... ....+
T Consensus        15 ~~~~~~~ei~~~~~~F~~~~~~G~i~~~Ef~~~l~~~~~~~~~~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~-~~~~~   93 (189)
T d1jbaa_          15 VGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVL-RGTLE   93 (189)
T ss_dssp             CCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHS-SCCCT
T ss_pred             cCccCHHHHHHHHHHhcccCCCCeeeHHHHHHHHHHcCCCccHHHHHHHHHHhccCCCCeEeehhHHHHHHhhc-ccchH
Confidence            3445566777777777655 589999999999654332    23589999999999999999999999998874 56678


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH-HHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED-LLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e-i~~~~~~~D~~~dg~I  387 (473)
                      +.++.+|+.||.|++|.++..++..++..+........+.....+        .+ ...++++ +..+|..+|.|+||.|
T Consensus        94 ~~~~~~F~~~D~d~~g~i~~~E~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~e~~~~~if~~~D~d~dG~I  164 (189)
T d1jbaa_          94 HKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQ--------QG-KLLTPEEVVDRIFLLVDENGDGQL  164 (189)
T ss_dssp             HHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSST--------TT-CCCCHHHHHHHHHHHHCCSCCSCB
T ss_pred             HHHHHHHhhhccCCCCcccHhHHHHHHHHHHHhhccccccchhhh--------hc-cccchHHHHHHHHHHhCCCCCCcE
Confidence            899999999999999888887666665555443332222211111        01 1244444 5679999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||..+++
T Consensus       165 s~~EF~~~~~  174 (189)
T d1jbaa_         165 SLNEFVEGAR  174 (189)
T ss_dssp             CHHHHHHHHT
T ss_pred             eHHHHHHHHH
Confidence            9999998775

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=2.9e-15  Score=132.47  Aligned_cols=143  Identities=18%  Similarity=0.296  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhhhh------hhhHHHHHHHHhhhhhhhhh------hhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         166 SSNINNAFKDLNQ------LMSMAKEMVEISKNISNKII------NRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       166 ~~~l~eaF~~lD~------~~e~~~~l~~lg~~~~~~~~------~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      .++++++|..+|.      ..++...|.+++..++....      ....++.  .+|.|++|.|+|+||+.++.      
T Consensus         3 ~~~~r~~F~~~d~~dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~--~~d~d~~g~i~~~ef~~~~~------   74 (173)
T d1alva_           3 VRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVA--VMDSDTTGKLGFEEFKYLWN------   74 (173)
T ss_dssp             HHHHHHHHHHHHGGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHH--HHCTTCSSSBCHHHHHHHHH------
T ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHH--HhccCCCCcccchhhhhhhh------
Confidence            4579999999997      68888999998877654310      1222332  36999999999999999876      


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                          ....++.+|+.+|.+++|+|+..||+.++ ..+  ........+..+|.|++|.|+|+||+.++...       +.
T Consensus        75 ----~~~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g~~~~~~~~~~~~~~d~d~~G~i~~~EF~~~~~~~-------~~  143 (173)
T d1alva_          75 ----NIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRL-------DA  143 (173)
T ss_dssp             ----HHHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHTCSSSCBCHHHHHHHHHHH-------HH
T ss_pred             ----hhhHHHHHHHHhccCCCCeecHHHHHHHHHHHHHhhHHHHHHHhhccccCCCCeEeHHHHHHHHHHH-------HH
Confidence                45678999999999999999999999853 333  23334455667777999999999999999766       67


Q ss_pred             HHHHhHHhcCCCCchhh
Q psy4132         311 LKFAFRIYDIDNDDDYY  327 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~  327 (473)
                      +..+|+.||+|++|.++
T Consensus       144 ~~~~f~~~D~d~~G~it  160 (173)
T d1alva_         144 MFRAFKSLDKDGTGQIQ  160 (173)
T ss_dssp             HHHHHHHHSSSCCSEEE
T ss_pred             HHHHHHHhCCCCCCcEE
Confidence            88999999999996553

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.59  E-value=2.8e-15  Score=134.28  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhhh------hhhHHHHHHHHhhhhhhhh------hhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         167 SNINNAFKDLNQ------LMSMAKEMVEISKNISNKI------INRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       167 ~~l~eaF~~lD~------~~e~~~~l~~lg~~~~~~~------~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      ..++++|..+|.      ..++...|..++...+...      .....++.  .+|.|++|.|+|+||..++.       
T Consensus        18 ~~~r~~F~~~d~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~--~~D~d~~G~I~~~EF~~~~~-------   88 (186)
T d1df0a1          18 DGFRRLFAQLAGEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVD--MLDEDGSGKLGLKEFYILWT-------   88 (186)
T ss_dssp             HHHHHHHHHHHGGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHH--HHCCSSSSEECHHHHHHHHH-------
T ss_pred             HHHHHHHHHHcCCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHH--HHcCCCCCcccHHHHHHHHH-------
Confidence            458888998765      6788888888887765320      12223333  37999999999999999876       


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c--cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L--QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~--~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                         ..+.+..+|+.+|+|++|+|+..||+.++. .  .....+..++..+|.|++|.|+|+||+.++..+       +.+
T Consensus        89 ---~~~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~~~~~~~~~~~~~~d~d~dg~I~f~eFi~~~~~l-------~~~  158 (186)
T d1df0a1          89 ---KIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRL-------EIL  158 (186)
T ss_dssp             ---HHHHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTEECCHHHHHHHHHHHCCSTTEECHHHHHHHHHHH-------HHH
T ss_pred             ---hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCCeEeHHHHHHHHHHH-------HHH
Confidence               467899999999999999999999999532 2  234456677788999999999999999999776       789


Q ss_pred             HHHhHHhcCCCCchh
Q psy4132         312 KFAFRIYDIDNDDDY  326 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~  326 (473)
                      ..+|+.+|+|++|.+
T Consensus       159 ~~~F~~~D~~~~G~i  173 (186)
T d1df0a1         159 FKIFKQLDPENTGTI  173 (186)
T ss_dssp             HHHHHHHCTTCCSEE
T ss_pred             HHHHHHhCCCCCCcE
Confidence            999999999999655

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=2.2e-15  Score=129.18  Aligned_cols=133  Identities=14%  Similarity=0.257  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCH---HHHHHHHHhcCC--CCCcccHHHHHHHHhhcccC--CCcHHH
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNP---LVQRVIDIFDED--RNGEVDFKEFIQGVSQFSVK--GDRESK  310 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~---~~~~l~~~~D~d--~dG~I~~~EF~~~l~~~~~~--~~~~e~  310 (473)
                      .++++++|+.||.+++|+|+.+||..++ .++..+   .+..++..++.+  ++|.|+|.||+.++......  ....+.
T Consensus         3 ~eelke~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~   82 (145)
T d2mysc_           3 ADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFED   82 (145)
T ss_pred             HHHHHHHHHHHcCCCCCeECHHHHHHHHHHhhhcchhhhhHHHHHHHhhcccccCccchhHHHHHHhhhhhccccchHHH
Confidence            4689999999999999999999999853 444333   466777776554  68899999999998765433  345677


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      +..+|+.||+|++|.+...   ++..+|..                    . | ..++++++..+++. |.|+||.|+|+
T Consensus        83 l~~aF~~~D~d~~G~I~~~---el~~~l~~--------------------~-g-~~~~~~e~~~l~~~-~~d~dG~I~y~  136 (145)
T d2mysc_          83 FVEGLRVFDKEGNGTVMGA---ELRHVLAT--------------------L-G-EKMTEEEVEELMKG-QEDSNGCINYE  136 (145)
T ss_pred             HHHHHHHhhcCCCCEEcHH---HHHHHHHH--------------------h-C-CCCCHHHHHHHHhh-cCCCCCeEEHH
Confidence            9999999999999655554   33333322                    1 2 24889999999974 88999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||+..+.
T Consensus       137 eF~~~ll  143 (145)
T d2mysc_         137 AFVKHIM  143 (145)
T ss_pred             HHHHHHh
Confidence            9987664

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=1.4e-15  Score=129.75  Aligned_cols=130  Identities=17%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcc-hhccCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccC--CCcHHHHHHHhH
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK--GDRESKLKFAFR  316 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~--~~~~e~l~~~F~  316 (473)
                      ..++++|..||.+++|.|+..||..+ ..++.++.. ..+..++.+++|.|+|++|+.++......  ....+.+..+|+
T Consensus         5 ~~fke~F~~~D~d~dG~I~~~el~~~l~~lg~~~t~-~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~   83 (140)
T d1ggwa_           5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTL-AEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQ   83 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCH-HHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCeECHHHHHHHHHHHHhhhHH-HhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHH
Confidence            56789999999999999999999985 456655554 34566788999999999999999765433  345678999999


Q ss_pred             HhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         317 IYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       317 ~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .||.|++|.+...++++++..+.                         ..+|++++..+++.+|.+ ||.|+|+||+..+
T Consensus        84 ~~D~d~~G~I~~~el~~~l~~~g-------------------------~~lt~~e~~~l~~~~d~~-dG~I~y~eF~~~m  137 (140)
T d1ggwa_          84 VFDKDATGMIGVGELRYVLTSLG-------------------------EKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI  137 (140)
T ss_dssp             TTCSSCSSCCCHHHHHHHHHHHH-------------------------SCSCHHHHHHHHHHTTCS-SCCSTTTHHHHHH
T ss_pred             HHhccCCCcchHHHHHHHHHHcC-------------------------CCCCHHHHHHHHHhhCCC-CCEEeHHHHHHHH
Confidence            99999996666644433333322                         148999999999999998 9999999998654

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=7e-15  Score=131.06  Aligned_cols=134  Identities=27%  Similarity=0.297  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ....+.|..+|+.+|.+++|+|+.+||+.++ ..+    ....++.+++.+|.+++|.|+|.||+.++...       ..
T Consensus        15 ~~~~~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EFl~~~~~~-------~~   87 (181)
T d1hqva_          15 LPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-------TD   87 (181)
T ss_dssp             CSCHHHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCSSSSSBCHHHHHHHHHHH-------HH
T ss_pred             CccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccccccchhhhHHHhhhhhc-------cc
Confidence            3456789999999999999999999999853 332    22357899999999999999999999998765       67


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.+++|.++..   ++..++.                    .. | ..++.+++.++++.+|.+++|.|+++
T Consensus        88 ~~~~f~~~D~~~~G~i~~~---el~~~l~--------------------~~-~-~~l~~e~~~~~~~~~d~~~dg~Is~~  142 (181)
T d1hqva_          88 WQNVFRTYDRDNSGMIDKN---ELKQALS--------------------GF-G-YRLSDQFHDILIRKFDRQGRGQIAFD  142 (181)
T ss_dssp             HHHHHHHHCTTCCSSBCHH---HHHHHHH--------------------HH-T-BCCCHHHHHHHHHHHCSSCSSCBCHH
T ss_pred             cccccccccccccchhhhH---HHHHHHH--------------------Hc-C-CcchhHHHHHHHHHhCCCCCCcCcHH
Confidence            8899999999998655553   3333332                    21 2 14788888999999999999999999


Q ss_pred             hhhccceeeee
Q psy4132         391 TYSSGVKVLQL  401 (473)
Q Consensus       391 EF~~~~~vl~~  401 (473)
                      ||+.++..++.
T Consensus       143 eF~~~~~~l~~  153 (181)
T d1hqva_         143 DFIQGCIVLQR  153 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887765544

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=133.45  Aligned_cols=144  Identities=24%  Similarity=0.372  Sum_probs=110.2

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCC--------ccHHHHhcchhccCCHHHHHHHHHhcCC-CCCcccHHHHHHHHhhcccC
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGA--------LSIDEFMSLPELQQNPLVQRVIDIFDED-RNGEVDFKEFIQGVSQFSVK  304 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~--------Is~~el~~l~~~~~~~~~~~l~~~~D~d-~dG~I~~~EF~~~l~~~~~~  304 (473)
                      .+..++..+++.|..++++++|.        ++.+++..+..+..++.++++++.+|.+ ++|.|+|+||+.+++.+...
T Consensus        11 ft~~EI~~l~~~F~~l~~~~~~~~~~~~~~~i~~~e~~~~~~l~~~~~~~rif~~fd~~~~~g~I~f~EFv~~l~~~~~~   90 (180)
T d1xo5a_          11 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDT   90 (180)
T ss_dssp             SCHHHHHHHHHHHHTTSCGGGCSHHHHHHCCEEHHHHHTSHHHHTCTTHHHHHHHHCCSTTCCEECHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHHCcCccccccccccceEcHHHHhcCcccccChHHHHHHHhccCCCCCCcCcHHHHHHHHHHHhhc
Confidence            35667888999999998887765        6677777777777778899999999987 69999999999999998778


Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH----HHHHHHHhc
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED----LLNSCLALD  380 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e----i~~~~~~~D  380 (473)
                      ...+++++.+|+.||.|++|.++.   +++..++........+                 ..+++++    +..+|+.+|
T Consensus        91 ~~~~~kl~~~F~~~D~d~~G~I~~---~el~~~l~~~~~~~~~-----------------~~~~~~~~~~~v~~~~~~~D  150 (180)
T d1xo5a_          91 ATPDIKSHYAFRIFDFDDDGTLNR---EDLSRLVNCLTGEGED-----------------TRLSASEMKQLIDNILEESD  150 (180)
T ss_dssp             SCHHHHHHHHHHHHCTTCSSSBCH---HHHHHHHHHHC-----------------------CCCCTTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHhhccccCCCCCeeeH---HHHHHHHHHHHhcccc-----------------ccccHHHHHHHHHHHHHHhC
Confidence            888999999999999999976666   4555555443211100                 0133322    445799999


Q ss_pred             cCCCCCeeHHhhhccce
Q psy4132         381 KLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       381 ~~~dg~Is~~EF~~~~~  397 (473)
                      .|+||.|+++||...+.
T Consensus       151 ~d~dG~Is~~EF~~~~~  167 (180)
T d1xo5a_         151 IDRDGTINLSEFQHVIS  167 (180)
T ss_dssp             TTCSSSBCHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHH
Confidence            99999999999987664

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.5e-15  Score=137.62  Aligned_cols=167  Identities=19%  Similarity=0.287  Sum_probs=115.8

Q ss_pred             CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc----CCHHHHHHHHHhcCCCCC
Q psy4132         213 RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFDEDRNG  287 (473)
Q Consensus       213 ~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D~d~dG  287 (473)
                      ..|.|+-+++..+...   ......++..+.+.|.  +.+++|.|+.+||+.++. .+    ..+.++.+|..+|.+++|
T Consensus         4 ~~~~l~~e~l~~l~~~---t~f~~~ei~~l~~~F~--~~~~~G~is~~EF~~~l~~~~~~~~~~~~~~~if~~~D~~~~G   78 (201)
T d1omra_           4 KSGALSKEILEELQLN---TKFTEEELSSWYQSFL--KECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDG   78 (201)
T ss_dssp             SSCTHHHHHHHHHGGG---CSSCHHHHHHHHHHHH--HHCTTSEEEHHHHHHHHHHHCTTSCCHHHHHHHHHTTTSCSSS
T ss_pred             ccCCCCHHHHHHHHHh---CCCCHHHHHHHHHHHH--HHCcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCCC
Confidence            3566777777665542   2234566667777774  445689999999999532 22    234578999999999999


Q ss_pred             cccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCC-CccchhHHHHHHHhhhCCCC
Q psy4132         288 EVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAG-GTMLLTDAYCRINRARGLEL  366 (473)
Q Consensus       288 ~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~-g~i~l~d~~~~~~~~~g~~~  366 (473)
                      .|+|.||+.++..+ .....++.++.+|+.||.|++|.+...|+..+...+........ ..+...            +.
T Consensus        79 ~I~f~EF~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~~~~~~~~~~~~~~------------~~  145 (201)
T d1omra_          79 TLDFKEYVIALHMT-SAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPED------------EN  145 (201)
T ss_dssp             EEEHHHHHHHHHHH-HSSCGGGSHHHHHHHHCTTCSSSBCHHHHHHHHHHHHTTSCHHHHTTSCGG------------GS
T ss_pred             eEeehhHHHHHHhh-cccchHHHHHHHHHHHccCCCCccCHHHHHHHHHHHHhhcChhhhhhhhhh------------hc
Confidence            99999999999877 56667888999999999999977777544444443332211000 000000            01


Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ...+.+..+|+.+|.|+||.|+++||+.++.
T Consensus       146 ~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~  176 (201)
T d1omra_         146 TPEKRAEKIWGFFGKKDDDKLTEKEFIEGTL  176 (201)
T ss_dssp             SHHHHHHHHHHHTTCCTTCCBCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence            2233456799999999999999999998774

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=99.58  E-value=2.8e-15  Score=126.23  Aligned_cols=126  Identities=21%  Similarity=0.319  Sum_probs=98.5

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchh-ccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCC--cHHHHHHHh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPE-LQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD--RESKLKFAF  315 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~-~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~--~~e~l~~~F  315 (473)
                      ...+|+.+|.|++|+|+..||..+.. .+..   ..++.++..+|.+++|.|+|+||+.++........  ....++.+|
T Consensus         2 ae~~F~~~D~d~dG~is~~E~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F   81 (134)
T d1jfja_           2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLY   81 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence            35789999999999999999998543 3322   24788999999999999999999999876644433  245688999


Q ss_pred             HHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhcc
Q psy4132         316 RIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSG  395 (473)
Q Consensus       316 ~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~  395 (473)
                      +.+|.+++|.+..   +++..++..                          ...+++.++|+.+|.|+||.|+++||...
T Consensus        82 ~~~D~~~~g~i~~---~el~~~~~~--------------------------~~~~~~~~~~~~~D~d~dG~is~~EF~~~  132 (134)
T d1jfja_          82 KLMDVDGDGKLTK---EEVTSFFKK--------------------------HGIEKVAEQVMKADANGDGYITLEEFLEF  132 (134)
T ss_dssp             HHHCCSSSSEEEH---HHHHHHHTT--------------------------TTCHHHHHHHHHHHCSSSSEEEHHHHHHH
T ss_pred             cccccccCCcccH---HHHHHHHHh--------------------------cCcHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence            9999999965555   344444431                          33456888899999999999999999875


Q ss_pred             c
Q psy4132         396 V  396 (473)
Q Consensus       396 ~  396 (473)
                      +
T Consensus       133 ~  133 (134)
T d1jfja_         133 S  133 (134)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=3.6e-15  Score=130.21  Aligned_cols=138  Identities=26%  Similarity=0.335  Sum_probs=107.0

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc---CCCc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV---KGDR  307 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~---~~~~  307 (473)
                      +..++.+++++|+.+|++++|+|+.+||+.++. .+   ....+..++..+|.+++|.+++.+|+..+.....   ....
T Consensus        15 s~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~   94 (162)
T d1topa_          15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKS   94 (162)
T ss_dssp             CHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHhccCCchhHHHHHhhhheeccCCCCCeeeehhhhhhhhhhhhhcccCc
Confidence            456778899999999999999999999988543 22   2235788999999999999999999887754422   2234


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      .+.++.+|+.||.|++|.++.   .++..++.                    +..  ...+++++..+|+.+|.|+||.|
T Consensus        95 ~~~~~~aF~~~D~d~~G~Is~---~e~~~~l~--------------------~~~--~~~~~~~~~~l~~~~D~d~dG~I  149 (162)
T d1topa_          95 EEELANCFRIFDKNADGFIDI---EELGEILR--------------------ATG--EHVTEEDIEDLMKDSDKNNDGRI  149 (162)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCH---HHHHHHHH--------------------TTT--CCCCHHHHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHHHHHCCCCCCCCcH---HHHHHHHH--------------------hhC--CCCCHHHHHHHHHHhCCCCCCcE
Confidence            567888999999999955555   33443333                    221  14788899999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +++||...+.
T Consensus       150 s~~EF~~~l~  159 (162)
T d1topa_         150 DFDEFLKMME  159 (162)
T ss_dssp             CHHHHHHHHH
T ss_pred             EHHHHHHHHH
Confidence            9999986554

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=99.57  E-value=2.1e-15  Score=134.66  Aligned_cols=139  Identities=18%  Similarity=0.325  Sum_probs=117.1

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ++|+++|..+|.       ..++...|+.++..++..  +...++..  +|.|++|.|+|.+|...+.          ..
T Consensus        18 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~l~~~~s~~--~~~~l~~~--~d~d~~~~i~~~ef~~~~~----------~~   83 (182)
T d1y1xa_          18 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLA--TTEKLLHM--YDKNHSGEITFDEFKDLHH----------FI   83 (182)
T ss_dssp             SCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHH--HHHHHHHH--HCTTCSSSBCHHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHHHhcccCchh--hhhhhhcc--ccccccccccccccccccc----------cc
Confidence            469999999999       778888888888888877  55555543  7889999999999998776          45


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcc-hhcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSL-PELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAF  315 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F  315 (473)
                      ..+..+|+.+|.+++|+|+.+||+.+ ...+   ....++.+++.+|.|++|.|+|+||+.++..+       ..+..+|
T Consensus        84 ~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~ls~~e~~~i~~~~d~~~dg~I~~~eF~~~~~~l-------~~~~~~F  156 (182)
T d1y1xa_          84 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV-------CRVRNVF  156 (182)
T ss_dssp             HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHHHH
T ss_pred             cccccchhccccccchhhhhHHHHHHHHHhCCchhHHHHHHHHhhcccCCCCCcCHHHHHHHHHHH-------HHHHHHH
Confidence            67899999999999999999999985 3333   23468999999999999999999999999766       5788999


Q ss_pred             HHhcCCCCchh
Q psy4132         316 RIYDIDNDDDY  326 (473)
Q Consensus       316 ~~~D~d~dg~~  326 (473)
                      +.+|.+++|.+
T Consensus       157 ~~~D~~~~G~i  167 (182)
T d1y1xa_         157 AFYDRERTGQV  167 (182)
T ss_dssp             HHHCTTCCSEE
T ss_pred             HHhCCCCCCcE
Confidence            99999998544

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.56  E-value=6.3e-15  Score=131.95  Aligned_cols=140  Identities=17%  Similarity=0.209  Sum_probs=110.3

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchh-cc-----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                      +.++.+|..+| +++|.|+..||+.++. .+           ....+..++..+|.|++|.|+|.||+.++...      
T Consensus        18 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~~------   90 (186)
T d1df0a1          18 DGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI------   90 (186)
T ss_dssp             HHHHHHHHHHH-GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHc-CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCCCCCcccHHHHHHHHHhH------
Confidence            56788999998 8999999999998532 21           12247899999999999999999999988765      


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHH------------HHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHH
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIA------------ALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNS  375 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~------------~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~  375 (473)
                       +.+..+|+.||+|++|.+...|+.+.+.            .+...+.+.+|.|+++++.+++.+.        +.+.++
T Consensus        91 -~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~~~~~~~~~~~~~~d~d~dg~I~f~eFi~~~~~l--------~~~~~~  161 (186)
T d1df0a1          91 -QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRL--------EILFKI  161 (186)
T ss_dssp             -HHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTEECCHHHHHHHHHHHCCSTTEECHHHHHHHHHHH--------HHHHHH
T ss_pred             -HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCCeEeHHHHHHHHHHH--------HHHHHH
Confidence             6799999999999998888876644433            3333445677888988888877664        357788


Q ss_pred             HHHhccCCCCCe--eHHhhhcc
Q psy4132         376 CLALDKLPDSPI--YLKTYSSG  395 (473)
Q Consensus       376 ~~~~D~~~dg~I--s~~EF~~~  395 (473)
                      |+.+|++++|.|  ++++|++.
T Consensus       162 F~~~D~~~~G~i~l~~~ef~~~  183 (186)
T d1df0a1         162 FKQLDPENTGTIQLDLISWLSF  183 (186)
T ss_dssp             HHHHCTTCCSEEEEEHHHHHHH
T ss_pred             HHHhCCCCCCcEEecHHHHHHH
Confidence            999999999977  67888764

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=99.55  E-value=1.2e-15  Score=147.64  Aligned_cols=190  Identities=16%  Similarity=0.266  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+....++++|..+|.       ..++...|..++..++..  ++..++..  +|.|++|.|+|.||+..+.        
T Consensus       118 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~~~--~d~~~~g~i~~~ef~~~~~--------  185 (321)
T d1ij5a_         118 EEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEG--PLKKLFVM--VENDTKGRMSYITLVAVAN--------  185 (321)
T ss_dssp             HHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHHHHTTSCSS--HHHHHHHH--HHHCCSSTHHHHHHTTSHH--------
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHcCCcccHH--HHHHHHHH--HhhcCCccccchhhhhhhh--------
Confidence            4455678999999988       788888999999888876  56666654  7999999999999988765        


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccC--CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQ--NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~--~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                        ....+...|+.+|.+++|.++..++... ...+.  ......++..++.+.+|.+.+.+|+......       ..+.
T Consensus       186 --~~~~~~~~F~~~d~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~-------~~~~  256 (321)
T d1ij5a_         186 --DLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCL-------LVLR  256 (321)
T ss_dssp             --HHHTSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-------HHHH
T ss_pred             --hhhhhhHHHHHHhhcccccchhHHHhhhhhcccccchHHHHHHHHhhhcccccccccccccchhhhh-------hHHH
Confidence              3344566899999999999999999984 22222  2346788999999999999999999877655       5678


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|..+|.|++|.++..   ++..++..                    . |...++++++..+|..+|.|+||.|+|+||
T Consensus       257 ~~F~~~D~d~~G~Is~~---E~~~~l~~--------------------~-~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF  312 (321)
T d1ij5a_         257 ILYAFADFDKSGQLSKE---EVQKVLED--------------------A-HIPESARKKFEHQFSVVDVDDSKSLSYQEF  312 (321)
T ss_dssp             HHHHHTCSSSCSSEEHH---HHHHHHHH--------------------T-TCCGGGCSTHHHHHHHHTTTTCSEECHHHH
T ss_pred             HHHHHHhcCCCCCCcHH---HHHHHHHH--------------------c-CCCcCcHHHHHHHHHHhCCCCCCcCcHHHH
Confidence            89999999999655553   33333332                    1 111256677899999999999999999999


Q ss_pred             hccce
Q psy4132         393 SSGVK  397 (473)
Q Consensus       393 ~~~~~  397 (473)
                      +..+.
T Consensus       313 ~~~ml  317 (321)
T d1ij5a_         313 VMLVL  317 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87664

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=1.1e-14  Score=128.71  Aligned_cols=143  Identities=17%  Similarity=0.304  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG  305 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~  305 (473)
                      ++++++++|+.+|.+ +|.|+..||+.++. .+           ....+..++..+|.+++|.|+|.||+.++...    
T Consensus         2 e~~~~r~~F~~~d~~-dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d~~g~i~~~ef~~~~~~~----   76 (173)
T d1alva_           2 EVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI----   76 (173)
T ss_dssp             HHHHHHHHHHHHHGG-GTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccCCCCcccchhhhhhhhhh----
Confidence            567899999999954 89999999999532 11           12357899999999999999999999988765    


Q ss_pred             CcHHHHHHHhHHhcCCCCchhhHhhHHHHH------------HHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHH
Q psy4132         306 DRESKLKFAFRIYDIDNDDDYYQALGNELI------------AALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLL  373 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~d~dg~~~~~e~~el~------------~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~  373 (473)
                         ..+..+|+.||.|++|.+...++...+            ..+...+.+.+|.|++.++..++.+.        +.+.
T Consensus        77 ---~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g~~~~~~~~~~~~~~d~d~~G~i~~~EF~~~~~~~--------~~~~  145 (173)
T d1alva_          77 ---KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRL--------DAMF  145 (173)
T ss_dssp             ---HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHTCSSSCBCHHHHHHHHHHH--------HHHH
T ss_pred             ---hHHHHHHHHhccCCCCeecHHHHHHHHHHHHHhhHHHHHHHhhccccCCCCeEeHHHHHHHHHHH--------HHHH
Confidence               678999999999999888876663333            22333344566888888887776553        3466


Q ss_pred             HHHHHhccCCCCCe--eHHhhhccc
Q psy4132         374 NSCLALDKLPDSPI--YLKTYSSGV  396 (473)
Q Consensus       374 ~~~~~~D~~~dg~I--s~~EF~~~~  396 (473)
                      .+|+.+|+|++|.|  +++||++.+
T Consensus       146 ~~f~~~D~d~~G~it~~~~efl~~~  170 (173)
T d1alva_         146 RAFKSLDKDGTGQIQVNIQEWLQLT  170 (173)
T ss_dssp             HHHHHHSSSCCSEEEEEHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEEecHHHHHHHH
Confidence            77888888888877  467776543

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.54  E-value=1.1e-14  Score=126.32  Aligned_cols=140  Identities=27%  Similarity=0.318  Sum_probs=108.5

Q ss_pred             ccchHHHHHHHHHHHhhCCCC-CCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhccc---C
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDN-SGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV---K  304 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~-~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~---~  304 (473)
                      ..++.+.++++++|+.+|.++ +|.|+..||..++ .++.   ...+..++..++.+++|.+++.+|...+.....   .
T Consensus         7 ~Lt~~~~~~l~~~F~~~D~d~~dG~I~~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
T d1dtla_           7 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSK   86 (156)
T ss_dssp             GSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC----
T ss_pred             HCCHHHHHHHHHHHHHHcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCCccchhhhhhhhhhccccccc
Confidence            446678889999999999996 8999999999853 3433   235788999999999999999999887665433   3


Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      ...++.++.+|+.||.|++|.+...   ++..++..                    . | ..+|++++..+++.+|.|+|
T Consensus        87 ~~~~~~l~~~F~~~D~d~~G~I~~~---e~~~~~~~--------------------~-~-~~ls~~e~~~i~~~~D~d~d  141 (156)
T d1dtla_          87 GKSEEELSDLFRMFDKNADGYIDLE---ELKIMLQA--------------------T-G-ETITEDDIEELMKDGDKNND  141 (156)
T ss_dssp             -CHHHHHHHHHHHHCTTCSSEEEHH---HHGGGGTT--------------------C----CCCHHHHHHHHHHHCTTSS
T ss_pred             ccHHHHHHHHHHHhCcCCCCcCcHH---HHHHHHhh--------------------c-C-CCCCHHHHHHHHHHhCCCCC
Confidence            4567889999999999999655553   33333321                    1 1 25899999999999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+++||+..++
T Consensus       142 G~I~~~eF~~~l~  154 (156)
T d1dtla_         142 GRIDYDEFLEFMK  154 (156)
T ss_dssp             SEEEHHHHHHHHH
T ss_pred             CeEeHHHHHHHHc
Confidence            9999999987654

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=126.24  Aligned_cols=127  Identities=16%  Similarity=0.240  Sum_probs=102.1

Q ss_pred             hhhHHHHHHHHhhhhhhhh---hhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCC
Q psy4132         179 LMSMAKEMVEISKNISNKI---INRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSG  255 (473)
Q Consensus       179 ~~e~~~~l~~lg~~~~~~~---~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G  255 (473)
                      ..|+...|..+|.++...-   .....++..  +|.|++|.|+|.||+.++.          ..+.++.+|+.+|+|++|
T Consensus        18 ~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~--~D~~~~G~i~~~EF~~l~~----------~~~~~~~~F~~fD~d~sG   85 (165)
T d1k94a_          18 AEELQRCLTQSGINGTYSPFSLETCRIMIAM--LDRDHTGKMGFNAFKELWA----------ALNAWKENFMTVDQDGSG   85 (165)
T ss_dssp             HHHHHHHHHHHTTTTTSCCCCHHHHHHHHHH--HCTTCSSCBCHHHHHHHHH----------HHHHHHHHHHHHCTTCCS
T ss_pred             HHHHHHHHHHcCCCCCcccCCHHHHHHHHHH--hCCCCCCcCcHHHHHHHhh----------ccchhHHHHHHhCCCCCC
Confidence            6788888888888765431   123334433  7999999999999999876          567899999999999999


Q ss_pred             CccHHHHhcc-hhccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchh
Q psy4132         256 ALSIDEFMSL-PELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDY  326 (473)
Q Consensus       256 ~Is~~el~~l-~~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~  326 (473)
                      +|+.+||+.+ ...+.   ...++.++..+|.  +|.|+|+||+.++..+       +.+..+|+.+|+|++|.+
T Consensus        86 ~I~~~El~~~l~~~G~~l~~~~~~~l~~~~d~--~g~i~~~eFi~~~~~l-------~~~~~~F~~~D~d~~G~i  151 (165)
T d1k94a_          86 TVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--NGRIFFDDYVACCVKL-------RALTDFFRKRDHLQQGSA  151 (165)
T ss_dssp             BCCHHHHHHHHHHTTCCCCHHHHHHHHHHHCB--TTBCBHHHHHHHHHHH-------HHHHHHHHTTCTTCCSEE
T ss_pred             eEcHHHHHHHHHHhhhcCCHHHHHHHHHHcCC--CCcCcHHHHHHHHHHH-------HHHHHHHHHhCCCCCCcE
Confidence            9999999995 33332   3468899999975  5899999999998876       678899999999999655

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.53  E-value=6.2e-15  Score=132.08  Aligned_cols=140  Identities=17%  Similarity=0.183  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchhc-cC-----------CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPEL-QQ-----------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR  307 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~~-----------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~  307 (473)
                      +.++++|+.+| +++|.|+..||+.++.. +.           ...++.++..+|.|++|.|+|.||..++...      
T Consensus        20 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d~~G~i~~~EF~~l~~~~------   92 (188)
T d1qxpa2          20 DNFKTLFSKLA-GDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRI------   92 (188)
T ss_dssp             -------CCCC-CSSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHHHHH------
T ss_pred             HHHHHHHHHHc-CCCCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCCCCCcccHHHHHHHHhhh------
Confidence            45889999999 45899999999985321 11           1347899999999999999999999988765      


Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHH------------hchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHH
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAAL------------IEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNS  375 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L------------~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~  375 (473)
                       +.++.+|+.||+|++|.++..|+..++..+            ...+.+.+|.|+++++.+++.+...        +..+
T Consensus        93 -~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~~~~~~~~~~l~~~~~~~dg~i~f~eFi~~~~~l~~--------~~~~  163 (188)
T d1qxpa2          93 -RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI--------LFKI  163 (188)
T ss_dssp             -HHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECCHHHHHHHHHHTSCSSSBCCHHHHHHHHHHHHH--------HHHH
T ss_pred             -HHHHHHHHHhCCCCCCEECHHHHHHHHHHhhhcCCHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH--------HHHH
Confidence             779999999999999887776653333222            2223455667777777666655432        5566


Q ss_pred             HHHhccCCCCCe--eHHhhhcc
Q psy4132         376 CLALDKLPDSPI--YLKTYSSG  395 (473)
Q Consensus       376 ~~~~D~~~dg~I--s~~EF~~~  395 (473)
                      |+.+|++++|.|  ++++|++.
T Consensus       164 F~~~D~~~~G~i~l~~~efl~~  185 (188)
T d1qxpa2         164 FKQLDPENTGTIQLDLISWLSF  185 (188)
T ss_dssp             HHHSCSSCCSCEEEEHHHHHHH
T ss_pred             HHHhCCCCCCeEEeeHHHHHHH
Confidence            777777777755  56666543

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.53  E-value=2.2e-14  Score=123.92  Aligned_cols=138  Identities=20%  Similarity=0.205  Sum_probs=103.5

Q ss_pred             chHHHHHHHHHHHhhCC--CCCCCccHHHHhcc-hhccCCHHHHHH--HHHhcCCCCCcccHHHHHHHHhhccc-CCCcH
Q psy4132         235 MVVDIRRLGKRFRKLDL--DNSGALSIDEFMSL-PELQQNPLVQRV--IDIFDEDRNGEVDFKEFIQGVSQFSV-KGDRE  308 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~--d~~G~Is~~el~~l-~~~~~~~~~~~l--~~~~D~d~dG~I~~~EF~~~l~~~~~-~~~~~  308 (473)
                      +..++++++++|..||.  +++|+|+..||+.+ ..++..+.-.++  +...+.+++|.|+|++|+.++..... .....
T Consensus         2 s~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~~lG~~~t~~e~~~~~~~~~~~~~~i~~~eFl~~~~~~~~~~~~~~   81 (152)
T d1wdcc_           2 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTF   81 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHTTCCSSTTSCEECHHHHHHHHHHHTTSCCCCH
T ss_pred             CHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHhccCccHhhhhhhhhhhccccccccccccccccccccccchhHH
Confidence            35678889999999994  88999999999985 455554432222  33457788999999999999977644 44667


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccC--CCCC
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKL--PDSP  386 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~--~dg~  386 (473)
                      +.+..+|+.||.+++|.++..   ++..+|..                    . | ..+|++++..+++.+|.+  ++|.
T Consensus        82 ~~l~~aF~~~D~~~~G~I~~~---el~~~l~~--------------------~-g-~~ls~~e~~~l~~~~d~~~d~~G~  136 (152)
T d1wdcc_          82 ADYMEAFKTFDREGQGFISGA---ELRHVLTA--------------------L-G-ERLSDEDVDEIIKLTDLQEDLEGN  136 (152)
T ss_dssp             HHHHHHHHTTCSSSSSEEEHH---HHHHHHHH--------------------S-S-SCCCHHHHHHHHHHHTCCCCTTSE
T ss_pred             HhhhhhhhccccccCccchHH---HHHHHHHH--------------------c-C-CCCCHHHHHHHHHHhccCCCCCCE
Confidence            889999999999999666654   33333322                    1 2 158999999999999865  4589


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus       137 I~y~eF~~~~~  147 (152)
T d1wdcc_         137 VKYEDFVKKVM  147 (152)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHh
Confidence            99999987653

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=9.2e-15  Score=125.22  Aligned_cols=130  Identities=15%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHH
Q psy4132         166 SSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD  238 (473)
Q Consensus       166 ~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~  238 (473)
                      ..+|++||..||+       ..++...|+++|.+++..  ++...+.....|.+++|.|+|++|+.++.... .......
T Consensus         3 ~eelke~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~--e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~-~~~~~~~   79 (145)
T d2mysc_           3 ADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNA--EINKILGNPSKEEMNAAAITFEEFLPMLQAAA-NNKDQGT   79 (145)
T ss_pred             HHHHHHHHHHHcCCCCCeECHHHHHHHHHHhhhcchhh--hhHHHHHHHhhcccccCccchhHHHHHHhhhh-hccccch
Confidence            4679999999999       788999999999999887  66666655445666789999999999886321 2223345


Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ...+..+|+.+|.+++|+|+.+||+.++ .++.   ...++.+++. +.|++|.|+|+||+..|.
T Consensus        80 ~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~-~~d~dG~I~y~eF~~~ll  143 (145)
T d2mysc_          80 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIM  143 (145)
T ss_pred             HHHHHHHHHHhhcCCCCEEcHHHHHHHHHHhCCCCCHHHHHHHHhh-cCCCCCeEEHHHHHHHHh
Confidence            6779999999999999999999999964 3332   2347778864 789999999999998774

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=2.6e-14  Score=127.39  Aligned_cols=128  Identities=23%  Similarity=0.332  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      +.++++++|+.+|.|++|+|+.+||..++ .++   ....++.++..+|.+++|.|+|.+|...+...       ..+..
T Consensus        16 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~l~~~~s~~~~~~l~~~~d~d~~~~i~~~ef~~~~~~~-------~~~~~   88 (182)
T d1y1xa_          16 DNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI-------LSMRE   88 (182)
T ss_dssp             TTSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHH
T ss_pred             cHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHhcccCchhhhhhhhccccccccccccccccccccccc-------ccccc
Confidence            44579999999999999999999999853 332   23458899999999999999999999988755       67889


Q ss_pred             HhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhh
Q psy4132         314 AFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYS  393 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~  393 (473)
                      +|+.+|.+++|.+...   ++..++.                    .. | ..++++++..+++.+|.|+||.|+++||+
T Consensus        89 ~F~~~D~~~~g~I~~~---el~~~l~--------------------~~-g-~~ls~~e~~~i~~~~d~~~dg~I~~~eF~  143 (182)
T d1y1xa_          89 GFRKRDSSGDGRLDSN---EVRAALL--------------------SS-G-YQVSEQTFQALMRKFDRQRRGSLGFDDYV  143 (182)
T ss_dssp             HHHHHCTTSSSCBCHH---HHHHHHH--------------------TT-S-CCCCHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             chhccccccchhhhhH---HHHHHHH--------------------Hh-C-CchhHHHHHHHHhhcccCCCCCcCHHHHH
Confidence            9999999998655553   3333332                    21 2 14889999999999999999999999999


Q ss_pred             ccce
Q psy4132         394 SGVK  397 (473)
Q Consensus       394 ~~~~  397 (473)
                      ..+.
T Consensus       144 ~~~~  147 (182)
T d1y1xa_         144 ELSI  147 (182)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.9e-14  Score=128.14  Aligned_cols=139  Identities=24%  Similarity=0.368  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhh-hhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNI-SNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD  238 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~-~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~  238 (473)
                      ..|.++|..+|+       ..++...|+.++... +..  .....+.  .+|.+++|.|+|.||+.++.          .
T Consensus        19 ~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~--~~~~l~~--~~D~d~~g~i~~~EFl~~~~----------~   84 (181)
T d1hqva_          19 SFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPV--TVRSIIS--MFDRENKAGVNFSEFTGVWK----------Y   84 (181)
T ss_dssp             HHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHH--HHHHHHH--HHCCSSSSSBCHHHHHHHHH----------H
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHH--HHHHHhh--ccccccccchhhhHHHhhhh----------h
Confidence            468999999999       566666666666542 333  3333333  37999999999999999886          3


Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      ...++.+|+.+|.+++|+|+.+||+.+. ..+   .+..++.++..+|.+++|.|+|+||+.++..+       +.+..+
T Consensus        85 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~l~~e~~~~~~~~~d~~~dg~Is~~eF~~~~~~l-------~~l~~~  157 (181)
T d1hqva_          85 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL-------QRLTDI  157 (181)
T ss_dssp             HHHHHHHHHHHCTTCCSSBCHHHHHHHHHHHTBCCCHHHHHHHHHHHCSSCSSCBCHHHHHHHHHHH-------HHHHHH
T ss_pred             ccccccccccccccccchhhhHHHHHHHHHcCCcchhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH-------HHHHHH
Confidence            4578899999999999999999999853 222   33458899999999999999999999988765       678999


Q ss_pred             hHHhcCCCCchh
Q psy4132         315 FRIYDIDNDDDY  326 (473)
Q Consensus       315 F~~~D~d~dg~~  326 (473)
                      |+.+|++++|.+
T Consensus       158 F~~~D~~~dG~i  169 (181)
T d1hqva_         158 FRRYDTDQDGWI  169 (181)
T ss_dssp             HHHHCTTCSSCC
T ss_pred             HHHhCCCCCCCE
Confidence            999999999654

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=3.7e-14  Score=127.22  Aligned_cols=147  Identities=25%  Similarity=0.403  Sum_probs=106.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ...+++.+.+.|..  .+++|.|+..||..++. .    ...+.++++|..+|.+++|.|+|.||+.++..+ .....++
T Consensus        23 s~~Ei~~l~~~F~~--~~~~G~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~-~~~~~~e   99 (190)
T d1fpwa_          23 DRREIQQWHKGFLR--DCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTT-SRGTLEE   99 (190)
T ss_dssp             THHHHHHHHHHHHH--HCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHH-SCCCSTH
T ss_pred             CHHHHHHHHHHHHH--HCCCCCccHHHHHHHHHHHCCCCChHHHHHHHHHHhCcCCCCcccHHHHHHHHHHH-ccCchHH
Confidence            45566677777754  45689999999988532 2    234568999999999999999999999999877 4567789


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      +++.+|+.||.|++|.++..   |+..++.......+......+          .+....+.+..+|+.+|.|+||.|++
T Consensus       100 ~~~~~F~~~D~d~dG~is~~---E~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~if~~~D~d~dG~Is~  166 (190)
T d1fpwa_         100 KLSWAFELYDLNHDGYITFD---EMLTIVASVYKMMGSMVTLNE----------DEATPEMRVKKIFKLMDKNEDGYITL  166 (190)
T ss_dssp             HHHHHHHHHCSSCSSEEEHH---HHHHHHHHHHTTSCSTTSSSC----------CCCCHHHHHHHHHHHHTTTCSSEEEH
T ss_pred             HHHHHHHHhccCCCCcCcHH---HHHHHHHHHHHhcccccCCCc----------hhhhHHHHHHHHHHHhCCCCCCcCcH
Confidence            99999999999999877775   444444433221111111100          01123455778999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||..+++
T Consensus       167 ~EF~~~~~  174 (190)
T d1fpwa_         167 DEFREGSK  174 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.6e-14  Score=123.95  Aligned_cols=149  Identities=15%  Similarity=0.238  Sum_probs=114.9

Q ss_pred             HHHHHHHhhhh------hhhHHHHHHHHhhhhhhhh---hhhhcccccccccCCCCCceeHHHHHHHHccccccccchHH
Q psy4132         168 NINNAFKDLNQ------LMSMAKEMVEISKNISNKI---INRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD  238 (473)
Q Consensus       168 ~l~eaF~~lD~------~~e~~~~l~~lg~~~~~~~---~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~  238 (473)
                      .+++.|+.++.      ..|+...|+++|.+++...   .....++.  .+|.|++|.|+|+||+.++.          .
T Consensus         8 ~~~~~F~~~~~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~--~~D~d~~G~I~f~EF~~~~~----------~   75 (172)
T d1juoa_           8 PLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVS--MLDRDMSGTMGFNEFKELWA----------V   75 (172)
T ss_dssp             TTHHHHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHH--HHCTTCSSCEEHHHHHHHHH----------H
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHH--HHCCCCCCceehHHHHHHHH----------h
Confidence            47778887644      7888899999998765321   12334444  37999999999999999876          4


Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHH
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA  314 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~  314 (473)
                      ...+..+|+.+|.+++|+|+.+|+..++ ..+   ....++.+++.+|.  +|.|+|++|+.++..+       +.+..+
T Consensus        76 ~~~~~~~f~~~D~d~sG~i~~~El~~~l~~~g~~ls~~~~~~l~~~~d~--~g~i~~~eF~~~~~~~-------~~~~~~  146 (172)
T d1juoa_          76 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYST--NGKITFDDYIACCVKL-------RALTDS  146 (172)
T ss_dssp             HHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHTCS--SSSEEHHHHHHHHHHH-------HHHHHH
T ss_pred             hhhhhHHHHHhCcCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCcCHHHHHHHHHHH-------HHHHHH
Confidence            5678899999999999999999999853 232   23358889999964  6889999999999876       678999


Q ss_pred             hHHhcCCCCchhhHhhHHHHHHHH
Q psy4132         315 FRIYDIDNDDDYYQALGNELIAAL  338 (473)
Q Consensus       315 F~~~D~d~dg~~~~~e~~el~~~L  338 (473)
                      |+.+|+|++|.++. +++|++.++
T Consensus       147 f~~~D~d~~G~Itl-~~~eFl~~~  169 (172)
T d1juoa_         147 FRRRDTAQQGVVNF-PYDDFIQCV  169 (172)
T ss_dssp             HHHTCTTCCSEEEE-EHHHHHHHH
T ss_pred             HHHhCCCCCCcEEe-cHHHHHHHH
Confidence            99999999966532 345665544

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-14  Score=125.54  Aligned_cols=142  Identities=16%  Similarity=0.191  Sum_probs=98.2

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hccC--------CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ--------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~--------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ..++..|+.++ +++|.|+..||+.++ ..+.        ...+..++..+|.|++|.|+|.||+.++...       ..
T Consensus         7 ~~~~~~F~~~~-~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D~d~~G~I~f~EF~~~~~~~-------~~   78 (172)
T d1juoa_           7 DPLYGYFAAVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NG   78 (172)
T ss_dssp             CTTHHHHHHHH-TTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-------HH
T ss_pred             HHHHHHHHHhC-CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHCCCCCCceehHHHHHHHHhh-------hh
Confidence            45778888886 778999999998853 3321        1347888899999999999999998887654       66


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchh---------h--cCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHh
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPL---------T--SAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLAL  379 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~---------~--~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~  379 (473)
                      +..+|+.||.|++|.+...|++.++..+...+         .  ..+|.+++.++..++.+..        .+.++|+.+
T Consensus        79 ~~~~f~~~D~d~sG~i~~~El~~~l~~~g~~ls~~~~~~l~~~~d~~g~i~~~eF~~~~~~~~--------~~~~~f~~~  150 (172)
T d1juoa_          79 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLR--------ALTDSFRRR  150 (172)
T ss_dssp             HHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHTCSSSSEEHHHHHHHHHHHH--------HHHHHHHHT
T ss_pred             hhHHHHHhCcCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH--------HHHHHHHHh
Confidence            78889999999887777755544433322111         0  2345666666665555532        366778888


Q ss_pred             ccCCCCCe--eHHhhhccce
Q psy4132         380 DKLPDSPI--YLKTYSSGVK  397 (473)
Q Consensus       380 D~~~dg~I--s~~EF~~~~~  397 (473)
                      |+|++|.|  +++||+.++.
T Consensus       151 D~d~~G~Itl~~~eFl~~~l  170 (172)
T d1juoa_         151 DTAQQGVVNFPYDDFIQCVM  170 (172)
T ss_dssp             CTTCCSEEEEEHHHHHHHHT
T ss_pred             CCCCCCcEEecHHHHHHHHH
Confidence            88888877  5688876543

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3e-14  Score=126.28  Aligned_cols=146  Identities=18%  Similarity=0.329  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ..+++.+.+.|.  +.+++|.|+.+||..++. ..    ..+.++.+|..+|.+++|.|+|+||+.++... .....+++
T Consensus        12 ~~ei~~l~~~F~--~~~~~G~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~~~g~I~~~EFl~~~~~~-~~~~~~~~   88 (178)
T d1s6ca_          12 KRELQVLYRGFK--NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSIL-LRGTVHEK   88 (178)
T ss_dssp             HHHHHHHHHHHH--HHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-HHCCHHHH
T ss_pred             HHHHHHHHHHHH--HHCcCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHH-hccchHHH
Confidence            445555555554  445689999999998532 21    23347899999999999999999999999766 45567889


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.||.|++|.+...++..+...+.......    +.+.+    .     +....+-+..+|+.+|.|+||.|+++
T Consensus        89 ~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~----~~~~~----~-----~~~~~~~~~~if~~~D~d~DG~Is~~  155 (178)
T d1s6ca_          89 LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKY----TYPVL----K-----EDTPRQHVDVFFQKMDKNKDGIVTLD  155 (178)
T ss_dssp             HHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC------------------------CHHHHHHHHHHHCTTCSSEECHH
T ss_pred             HHHHHHhhccCCCCeecHHHHHHHHHHHHhhcccc----cccCC----c-----HHHHHHHHHHHHHHhCCCCCCcEeHH
Confidence            99999999999998887765555444443322110    00000    0     11334456689999999999999999


Q ss_pred             hhhccce
Q psy4132         391 TYSSGVK  397 (473)
Q Consensus       391 EF~~~~~  397 (473)
                      ||..++.
T Consensus       156 EF~~~i~  162 (178)
T d1s6ca_         156 EFLESCQ  162 (178)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9998765

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.50  E-value=4.2e-14  Score=122.10  Aligned_cols=131  Identities=15%  Similarity=0.236  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhhhh---------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         163 KETSSNINNAFKDLNQ---------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~---------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      +++..+++++|..||.         ..++...|++||.+++..  ++..+.   ..|.+++|.|+|++|+.++....  .
T Consensus         3 ~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~~lG~~~t~~--e~~~~~---~~~~~~~~~i~~~eFl~~~~~~~--~   75 (152)
T d1wdcc_           3 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE--DVFAVG---GTHKMGEKSLPFEEFLPAYEGLM--D   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHH--HHHHTT---CCSSTTSCEECHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHhccCccHh--hhhhhh---hhhcccccccccccccccccccc--c
Confidence            3445679999999983         778999999999999887  555443   25788899999999999886321  1


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCC--CCCcccHHHHHHHHhh
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDED--RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d--~dG~I~~~EF~~~l~~  300 (473)
                      ......+.+.++|+.||.+++|+|+..||+.++ .++.   ...++.+++.+|.+  ++|.|+|+||++.|..
T Consensus        76 ~~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~d~~~d~~G~I~y~eF~~~~~~  148 (152)
T d1wdcc_          76 CEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA  148 (152)
T ss_dssp             SCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred             cchhHHHhhhhhhhccccccCccchHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCCCEEEHHHHHHHHhc
Confidence            223455789999999999999999999999964 3332   33588999999864  5689999999988753

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.8e-14  Score=123.46  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             HHHHHhhCCCCCCCccHHHHhcch-hccCC--------HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHH
Q psy4132         243 GKRFRKLDLDNSGALSIDEFMSLP-ELQQN--------PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF  313 (473)
Q Consensus       243 ~~~F~~~D~d~~G~Is~~el~~l~-~~~~~--------~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~  313 (473)
                      ...|+.+ .+++|.|+.+||+.++ ..+.+        ..++.++..+|.|++|.|+|.||+.++...       +.++.
T Consensus         3 ~~~F~~~-a~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~~G~i~~~EF~~l~~~~-------~~~~~   74 (165)
T d1k94a_           3 YTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKE   74 (165)
T ss_dssp             HHHHHHH-HGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHH
T ss_pred             HHHHHHh-cCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHhhcc-------chhHH
Confidence            4566666 5779999999998853 22221        247889999999999999999999988765       67899


Q ss_pred             HhHHhcCCCCchhhHhhH
Q psy4132         314 AFRIYDIDNDDDYYQALG  331 (473)
Q Consensus       314 ~F~~~D~d~dg~~~~~e~  331 (473)
                      +|+.||+|++|.+...|+
T Consensus        75 ~F~~fD~d~sG~I~~~El   92 (165)
T d1k94a_          75 NFMTVDQDGSGTVEHHEL   92 (165)
T ss_dssp             HHHHHCTTCCSBCCHHHH
T ss_pred             HHHHhCCCCCCeEcHHHH
Confidence            999999999976666544

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=5.8e-14  Score=124.75  Aligned_cols=148  Identities=26%  Similarity=0.407  Sum_probs=109.1

Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcH
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE  308 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~  308 (473)
                      .+..+++.+...|..  .+++|.|+..||...+ ...    ..+.+++++..+|.+++|.|+|.||+.++.... ....+
T Consensus        18 fs~~ei~~l~~~F~~--~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eFl~~~~~~~-~~~~~   94 (181)
T d1bjfa_          18 FTEHEIQEWYKGFLR--DCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTS-RGKLE   94 (181)
T ss_dssp             CCHHHHHHHHHHHHH--HSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHT-SSCHH
T ss_pred             CCHHHHHHHHHHHHh--hCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHh-hhchH
Confidence            345566667777754  4678999999999853 222    224578999999999999999999999998874 56778


Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      ++++.+|+.||.|++|.+...   ++..++............+.+.          +.++.+.+..+|+.+|.|+||.|+
T Consensus        95 ~~~~~~f~~~D~d~dg~i~~~---E~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~if~~~D~d~dG~Is  161 (181)
T d1bjfa_          95 QKLKWAFSMYDLDGNGYISKA---EMLEIVQAIYKMVSSVMKMPED----------ESTPEKRTEKIFRQMDTNRDGKLS  161 (181)
T ss_dssp             HHHHHHHHHHCTTCSSCEEHH---HHHHHHHHHHTTCCCTTTSCGG----------GSSHHHHHHHHHHHSCTTCSSEEC
T ss_pred             HHHHHHHHHhccCCCCeecHH---HHHHHHHHHhhhccccccCCcc----------cccHHHHHHHHHHHhCCCCCCcEe
Confidence            899999999999999777764   5555555433322222221110          135566788999999999999999


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      ++||..++.
T Consensus       162 ~~EF~~~~~  170 (181)
T d1bjfa_         162 LEEFIRGAK  170 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.49  E-value=4.2e-15  Score=133.25  Aligned_cols=141  Identities=22%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhhh------hhhHHHHHHHHhhhhhhh------hhhhhcccccccccCCCCCceeHHHHHHHHcccccccc
Q psy4132         167 SNINNAFKDLNQ------LMSMAKEMVEISKNISNK------IINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKK  234 (473)
Q Consensus       167 ~~l~eaF~~lD~------~~e~~~~l~~lg~~~~~~------~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~  234 (473)
                      ..++++|+.+|.      ..++...|.+++......      ......++.  .+|.|++|.|+|+||..++.       
T Consensus        20 ~~~r~~F~~~d~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~--~~D~d~~G~i~~~EF~~l~~-------   90 (188)
T d1qxpa2          20 DNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVN--LMDRDGNGKLGLVEFNILWN-------   90 (188)
T ss_dssp             -------CCCCCSSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHH--HHCC--CCCCCSSSHHHHHH-------
T ss_pred             HHHHHHHHHHcCCCCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHH--HhcCCCCCcccHHHHHHHHh-------
Confidence            458999998887      334444444444333211      002233333  37999999999999999876       


Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                         ....++.+|+.+|+|++|+|+..||+.++ ..+  .+..+..++...+.+++|.|+|+||+.++..+       +.+
T Consensus        91 ---~~~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~~~~~~~~~~l~~~~~~~dg~i~f~eFi~~~~~l-------~~~  160 (188)
T d1qxpa2          91 ---RIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRL-------EIL  160 (188)
T ss_dssp             ---HHHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEECCHHHHHHHHHHTSCSSSBCCHHHHHHHHHHH-------HHH
T ss_pred             ---hhHHHHHHHHHhCCCCCCEECHHHHHHHHHHhhhcCCHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH-------HHH
Confidence               56789999999999999999999999853 333  23344444444467999999999999999876       678


Q ss_pred             HHHhHHhcCCCCchh
Q psy4132         312 KFAFRIYDIDNDDDY  326 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~  326 (473)
                      ..+|+.+|++++|.+
T Consensus       161 ~~~F~~~D~~~~G~i  175 (188)
T d1qxpa2         161 FKIFKQLDPENTGTI  175 (188)
T ss_dssp             HHHHHHSCSSCCSCE
T ss_pred             HHHHHHhCCCCCCeE
Confidence            889999999999644

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.49  E-value=5.7e-15  Score=131.77  Aligned_cols=137  Identities=24%  Similarity=0.357  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      ++.++..|+++|+.+|.+++|+|+.+||..++ .++..   ..++.++..+|.+++|.|+|.+|+.++.... .....+.
T Consensus         5 t~~ei~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~e~   83 (182)
T d1s6ia_           5 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLN-KLEREEN   83 (182)
T ss_dssp             SCTTTCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSS-SSCCCCS
T ss_pred             CHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHcCCccccccchhhhhhhhccccccchHHHHHHHHHhhc-ccccHHH
Confidence            34556789999999999999999999998853 33322   3578999999999999999999999877663 4445667


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLK  390 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~  390 (473)
                      ++.+|+.+|.+++|.+..   .++..++..                     .|   ++++++..+|+.+|.|+||.|+++
T Consensus        84 l~~aF~~~D~d~~G~i~~---~el~~~l~~---------------------~g---l~~~ev~~~f~~~D~d~DG~Is~~  136 (182)
T d1s6ia_          84 LVSAFSYFDKDGSGYITL---DEIQQACKD---------------------FG---LDDIHIDDMIKEIDQDNDGQIDYG  136 (182)
T ss_dssp             THHHHHHTTTTCSSEEEH---HHHHHTTTT---------------------TT---CCTTHHHHHHHHHCSSSSSEEETT
T ss_pred             HHHHHHHHhhcCCCccch---hhhhhhhhh---------------------cC---ccHHHHHHHHHHhhcCCCCeEeHH
Confidence            899999999999965555   344333321                     12   677889999999999999999999


Q ss_pred             hhhccceee
Q psy4132         391 TYSSGVKVL  399 (473)
Q Consensus       391 EF~~~~~vl  399 (473)
                      ||...++-.
T Consensus       137 EF~~~m~~~  145 (182)
T d1s6ia_         137 EFAAMMRKR  145 (182)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHHhC
Confidence            999877643

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.48  E-value=4.1e-14  Score=120.75  Aligned_cols=126  Identities=14%  Similarity=0.229  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +++..+++++|..+|.       ..++...|+.+|.+++..  ++..++      .+++|.|+|.+|+.++.....   .
T Consensus         3 ~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~--el~~~~------~~~~~~i~~~eF~~~~~~~~~---~   71 (142)
T d1wdcb_           3 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDK--ELTAML------KEAPGPLNFTMFLSIFSDKLS---G   71 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHH--HHHHHH------TTSSSCCCHHHHHHHHHHHTC---S
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCChHHHHHHHHHhhcCCCHH--HHHHHH------HhccCcccccccccccccccc---c
Confidence            4556789999999998       788999999999999887  565544      356889999999999874322   2


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ....+.+..+|+.||.+++|+|+.+||+.++ .++   ....++.+++.+|.+ +|.|+|.||+.+|..
T Consensus        72 ~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~lt~~e~~~l~~~~d~~-~G~I~y~eF~~~l~~  139 (142)
T d1wdcb_          72 TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKG  139 (142)
T ss_dssp             CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHHT
T ss_pred             cchhhhHHHhhhhhcccCCCcccHHHHHHHHHHccccCCHHHHHHHHHHhCCC-CCEEcHHHHHHHHhc
Confidence            2345789999999999999999999999964 333   233588999999998 699999999998854

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.5e-14  Score=124.03  Aligned_cols=130  Identities=16%  Similarity=0.203  Sum_probs=96.4

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcc-hhccCCH---HHHHHHH-HhcCCCCCcccHHHHHHHHhhcc-----cCCCcHHHH
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSL-PELQQNP---LVQRVID-IFDEDRNGEVDFKEFIQGVSQFS-----VKGDRESKL  311 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~---~~~~l~~-~~D~d~dG~I~~~EF~~~l~~~~-----~~~~~~e~l  311 (473)
                      ++++|..+|.+++|+|+.+||..+ ..++..+   .++.++. ..+.+.+|.|+|++|+.++....     ......+.+
T Consensus         4 ~k~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~ei~~l~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~l   83 (146)
T d1m45a_           4 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDF   83 (146)
T ss_dssp             CTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHH
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHHHcCCchhHHHHhhhhccccccccccccccchhhhhhhhhcccccccccchHHHH
Confidence            567999999999999999999885 3444333   4667775 44566789999999999986542     234556789


Q ss_pred             HHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHh
Q psy4132         312 KFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKT  391 (473)
Q Consensus       312 ~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~E  391 (473)
                      ..+|+.||.+++|.+...   ++..+|.                    .. |. .++++++..+++.+|.|+||.|+|+|
T Consensus        84 ~~~F~~~D~~~~G~I~~~---el~~~l~--------------------~~-g~-~l~~~ei~~l~~~~D~d~dG~I~y~e  138 (146)
T d1m45a_          84 VKAFQVFDKESTGKVSVG---DLRYMLT--------------------GL-GE-KLTDAEVDELLKGVEVDSNGEIDYKK  138 (146)
T ss_dssp             HHHHHTTCSSSSSEEEHH---HHHHHHH--------------------HS-TT-CCCHHHHHHHHTTCCCCTTSEEEHHH
T ss_pred             HHHHHhhccccccccchh---hhhhhhc--------------------cc-CC-cchHHHHHHHHHHhCCCCCCcEEHHH
Confidence            999999999999655553   3333332                    22 21 48999999999999999999999999


Q ss_pred             hhccc
Q psy4132         392 YSSGV  396 (473)
Q Consensus       392 F~~~~  396 (473)
                      |++.+
T Consensus       139 F~~~i  143 (146)
T d1m45a_         139 FIEDV  143 (146)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=99.46  E-value=8.7e-14  Score=118.97  Aligned_cols=130  Identities=23%  Similarity=0.379  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +++..+|+++|..+|+       ..++...+..++..++..  .....+.  .+|.+++|.|+|.+|+..+....   ..
T Consensus         5 ~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~~~~~~---~~   77 (146)
T d1exra_           5 EEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEA--ELQDMIN--EVDADGNGTIDFPEFLSLMARKM---KE   77 (146)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHH--HHHHHHH--HHCTTCSSSEEHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCCCHH--HHHHHHH--hcCCCCCCcccHHHHHHHHHHHh---hc
Confidence            4456789999999999       677888888888887765  4444443  37899999999999999876211   12


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+.++.+|+.+|.+++|+|+..||+.+. ..+   ....++.+++.+|.|++|.|+|+||+.+|.
T Consensus        78 ~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~i~~~~D~d~dG~i~~~eF~~~l~  145 (146)
T d1exra_          78 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV  145 (146)
T ss_dssp             HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhc
Confidence            3356789999999999999999999999954 233   234589999999999999999999999874

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=99.45  E-value=9.7e-14  Score=116.56  Aligned_cols=124  Identities=18%  Similarity=0.244  Sum_probs=74.6

Q ss_pred             HHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHH
Q psy4132         170 NNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL  242 (473)
Q Consensus       170 ~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l  242 (473)
                      .++|..+|.       ..++...+..++..++..  ++..++..  +|.+++|.|+|+||+.++.... ..........+
T Consensus         3 e~~F~~~D~d~dG~is~~E~~~~l~~~~~~~~~~--~~~~~~~~--~D~~~~g~i~~~Ef~~~~~~~~-~~~~~~~~~~~   77 (134)
T d1jfja_           3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQ--LLQLIFKS--IDADGNGEIDQNEFAKFYGSIQ-GQDLSDDKIGL   77 (134)
T ss_dssp             HHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHH--HHHHHHHH--HCSSCCSEEEHHHHHHHTTCSS-CCSSHHHHHHH
T ss_pred             HHHHHHHcCCCcCCCcHHHHHHHHHHcCCCCCHH--HHHHHHHH--hhhccccccccccccccccccc-ccccccccccc
Confidence            456666666       556666666666665554  34434332  5666777777777776665322 12233344556


Q ss_pred             HHHHHhhCCCCCCCccHHHHhcchhccCCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         243 GKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       243 ~~~F~~~D~d~~G~Is~~el~~l~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      +.+|+.+|.+++|+|+.+|++.+........+..++..+|.|++|.|+|+||+.+|
T Consensus        78 ~~~F~~~D~~~~g~i~~~el~~~~~~~~~~~~~~~~~~~D~d~dG~is~~EF~~~~  133 (134)
T d1jfja_          78 KVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHHHHHCCSSSSEEEHHHHHHHHTTTTCHHHHHHHHHHHCSSSSEEEHHHHHHHH
T ss_pred             cccccccccccCCcccHHHHHHHHHhcCcHHHHHHHHHHCCCCCCCCCHHHHHHHh
Confidence            66777777777777777777665443334556666677777777777777776654

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=123.01  Aligned_cols=147  Identities=25%  Similarity=0.411  Sum_probs=103.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c---c-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L---Q-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES  309 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~---~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e  309 (473)
                      ...++..|.+.|...  +++|.++..++..+.. .   . ..+.++.+|..+|.+++|.|+|.||+.++..+. ....++
T Consensus        20 s~~Ei~~l~~~F~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~d~~~dg~I~~~EF~~~l~~~~-~~~~~e   96 (187)
T d1g8ia_          20 TEKEVQQWYKGFIKD--CPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTS-RGTLDE   96 (187)
T ss_dssp             CHHHHHHHHHHHHHH--CTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHH-HCCHHH
T ss_pred             CHHHHHHHHHHHHHH--CCCCCcCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHhc-cCchhh
Confidence            445566666666544  4789999999998532 1   1 224568899999999999999999999998874 456788


Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      +++.+|+.||.|++|.+...|+..+...+....... ...+..            +....+.+..+|+.+|.|+||.|++
T Consensus        97 ~l~~~F~~~D~d~dG~i~~~El~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~v~~if~~~D~d~dG~Is~  163 (187)
T d1g8ia_          97 KLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNT-VELPEE------------ENTPEKRVDRIFAMMDKNADGKLTL  163 (187)
T ss_dssp             HHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC------CCGG------------GSSHHHHHHHHHHHHCSSCSSEEEH
T ss_pred             hHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhhhccc-ccCchh------------hccHHHHHHHHHHHhCCCCCCcEeH
Confidence            999999999999998777754444443332211100 011111            1233455678999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...++
T Consensus       164 ~EF~~~~~  171 (187)
T d1g8ia_         164 QEFQEGSK  171 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998664

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=1.1e-13  Score=119.87  Aligned_cols=135  Identities=19%  Similarity=0.316  Sum_probs=105.2

Q ss_pred             HhHHHHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      ..+++..+|+++|+.+|.        ..++...|+++|..++..  +....+..  ++.+++|.+++.+|...+......
T Consensus         8 Lt~~~~~~l~~~F~~~D~d~~dG~I~~~e~~~~l~~lg~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   83 (156)
T d1dtla_           8 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPE--ELQEMIDE--VDEDGSGTVDFDEFLVMMVRSMKD   83 (156)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHH--HHHHHHHH--HCTTSSSSBCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCeECHHHHHHHHHHcCCCCCHH--HHHHHHHH--hhccCCCccchhhhhhhhhhcccc
Confidence            345566789999999986        678888899999988877  55555443  678899999999998866543333


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-c---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-Q---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .......+.+..+|+.+|.+++|+|+.+||+.+... +   ....++.+++.+|.|++|.|+|+||+.+|.
T Consensus        84 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~~~~~~~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~~l~  154 (156)
T d1dtla_          84 DSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMK  154 (156)
T ss_dssp             ----CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHhCcCCCCcCcHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHc
Confidence            334456678999999999999999999999996432 2   234589999999999999999999999885

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=4.1e-14  Score=120.53  Aligned_cols=123  Identities=16%  Similarity=0.265  Sum_probs=100.3

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ..+++||..+|.       ..++...|++||.+++..  ++..      ++.+++|.|+|++|+.++..... .......
T Consensus         5 ~~fke~F~~~D~d~dG~I~~~el~~~l~~lg~~~t~~--ei~~------~~~~~~~~i~~~eF~~~~~~~~~-~~~~~~~   75 (140)
T d1ggwa_           5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLA--EITE------IESTLPAEVDMEQFLQVLNRPNG-FDMPGDP   75 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCHH--HHHH------HHTTSCSSEEHHHHHHHHCTTSS-SSSSCCH
T ss_pred             HHHHHHHHHHCCCCCCeECHHHHHHHHHHHHhhhHHH--hhhh------hhccccccccchhhhhhhhhhhh-cchhhHH
Confidence            568999999998       789999999999999877  4332      56788999999999999874221 2223456


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      +.+.++|+.+|.+++|+|+.+||+.++ .++   ....++.+++.+|.+ +|.|+|+||+.+|.
T Consensus        76 ~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~lt~~e~~~l~~~~d~~-dG~I~y~eF~~~m~  138 (140)
T d1ggwa_          76 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMIL  138 (140)
T ss_dssp             HHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTCS-SCCSTTTHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcchHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-CCEEeHHHHHHHHh
Confidence            789999999999999999999999964 332   334689999999988 99999999999874

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-13  Score=114.47  Aligned_cols=128  Identities=23%  Similarity=0.375  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ++.++|+++|..+|+       ..++...++.++..++..  .......  .+|.+++|.|++.+|...+...   ....
T Consensus         3 ~~~~elk~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~~~~~---~~~~   75 (141)
T d2obha1           3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKE--EIKKMIS--EIDKEGTGKMNFGDFLTVMTQK---MSEK   75 (141)
T ss_dssp             HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHH--HHHHHHH--HHTTTCCSEEEHHHHHHHHHHH---HHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCeEeHHHHHHHHHhcCCchhHH--HHHHHHH--hhccCCCCeechHHHHHHHHHH---Hhhh
Confidence            456689999999998       788999999998888876  4444443  3788999999999999987632   1223


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      .....++.+|..+|.+++|.|+..+|..+.. .+   ....+..+|+.+|.|++|.|+|+||+.+|
T Consensus        76 ~~~~~l~~~f~~~d~~~~G~i~~~el~~~l~~~g~~l~~~e~~~l~~~~D~d~dG~i~~~EF~~~m  141 (141)
T d2obha1          76 DTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM  141 (141)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             ccHHHHHHHHHHhcccCCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCCEeHHHHHHhC
Confidence            4567899999999999999999999999633 33   23358899999999999999999999875

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.42  E-value=4.5e-13  Score=116.54  Aligned_cols=137  Identities=18%  Similarity=0.322  Sum_probs=107.3

Q ss_pred             HhHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccc
Q psy4132         161 KQKETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHK  233 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~  233 (473)
                      ...++..+|+++|..+|+       ..++...+..++..++..  .+..++.  .+|.+++|.+++.+|...+.......
T Consensus        14 ls~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~--~~~~~~~--~~d~~~~~~~~~~e~~~~~~~~~~~~   89 (162)
T d1topa_          14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE--ELDAIIE--EVDEDGSGTIDFEEFLVMMVRQMKED   89 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHH--HHHHHHH--HHCTTSCCEEEHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHhccCCchhHH--HHHhhhh--eeccCCCCCeeeehhhhhhhhhhhhh
Confidence            334555679999999998       678888888888888766  5555554  37889999999999988765332223


Q ss_pred             cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......+.++.+|+.+|.+++|+|+..||+.++. .+   ....++.+|+.+|.|++|.|+|+||+.+|..+
T Consensus        90 ~~~~~~~~~~~aF~~~D~d~~G~Is~~e~~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~~~  161 (162)
T d1topa_          90 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV  161 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHSC
T ss_pred             cccCcHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCCcEEHHHHHHHHHcC
Confidence            3345667788999999999999999999999532 22   23357899999999999999999999998643

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-14  Score=119.46  Aligned_cols=127  Identities=17%  Similarity=0.300  Sum_probs=96.1

Q ss_pred             HHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHH
Q psy4132         168 NINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIR  240 (473)
Q Consensus       168 ~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~  240 (473)
                      +|++||..||+       ..++...|+++|..++..  ++..++.....+.+++|.|+|.+|..++.... ........+
T Consensus         1 e~ke~F~~~D~d~~G~I~~~el~~~l~~lg~~~t~~--e~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~-~~~~~~~~~   77 (139)
T d1w7jb1           1 EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNA--EVLKVLGNPKSDELKSRRVDFETFLPMLQAVA-KNRGQGTYE   77 (139)
T ss_dssp             CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHH--HHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHC-C--------
T ss_pred             CHHHHHHHHhCCCCCeECHHHHHHHHHHhccCCCHH--HHHHHHHHHhcccccCCceeeeccchhhHhhh-hhccccHHH
Confidence            47999999999       789999999999999987  66666654333456789999999999886321 222334456


Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      .+..+|+.+|++++|+|+.+||+.++ ..+   ....++.++.. +.|++|.|+|.||+..|
T Consensus        78 ~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~-~~d~dg~I~~~eF~~~l  138 (139)
T d1w7jb1          78 DYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKHI  138 (139)
T ss_dssp             CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTT-CCCTTSEEEHHHHHHHT
T ss_pred             HHHHhhhhccCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCeEeHHHHHHHh
Confidence            78999999999999999999999964 333   23356777764 88999999999999865

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.2e-14  Score=119.38  Aligned_cols=130  Identities=19%  Similarity=0.278  Sum_probs=94.2

Q ss_pred             HHHHHHHhhCCCCCCCccHHHHhcc-hhccCCH---HHHHHHHHhc--CCCCCcccHHHHHHHHhhcccC--CCcHHHHH
Q psy4132         241 RLGKRFRKLDLDNSGALSIDEFMSL-PELQQNP---LVQRVIDIFD--EDRNGEVDFKEFIQGVSQFSVK--GDRESKLK  312 (473)
Q Consensus       241 ~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~~---~~~~l~~~~D--~d~dG~I~~~EF~~~l~~~~~~--~~~~e~l~  312 (473)
                      +++++|+.||.+++|+|+..||..+ ..++..+   .+..++..++  .+++|.|+|.+|..++......  ....+.+.
T Consensus         1 e~ke~F~~~D~d~~G~I~~~el~~~l~~lg~~~t~~e~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~l~   80 (139)
T d1w7jb1           1 EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYL   80 (139)
T ss_dssp             CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------CCH
T ss_pred             CHHHHHHHHhCCCCCeECHHHHHHHHHHhccCCCHHHHHHHHHHHhcccccCCceeeeccchhhHhhhhhccccHHHHHH
Confidence            3789999999999999999999985 3444443   3556665555  3678999999999998765332  33456689


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhh
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTY  392 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF  392 (473)
                      .+|+.||+|++|.++.+   ++..+|...                     | ..++++++..+++. |.++||.|+|+||
T Consensus        81 ~aF~~~D~d~~G~I~~~---el~~~l~~~---------------------g-~~~~~~e~~~l~~~-~~d~dg~I~~~eF  134 (139)
T d1w7jb1          81 EGFRVFDKEGNGKVMGA---ELRHVLTTL---------------------G-EKMTEEEVETVLAG-HEDSNGCINYEAF  134 (139)
T ss_dssp             HHHHTTCTTSSSEEEHH---HHHHHHHHS---------------------S-SCCCHHHHHHHHTT-CCCTTSEEEHHHH
T ss_pred             HhhhhccCCCCCeEeHH---HHHHHHHHh---------------------C-CCCCHHHHHHHHhh-CCCCCCeEeHHHH
Confidence            99999999999666664   444433321                     2 24888889888864 8899999999999


Q ss_pred             hccc
Q psy4132         393 SSGV  396 (473)
Q Consensus       393 ~~~~  396 (473)
                      +..+
T Consensus       135 ~~~l  138 (139)
T d1w7jb1         135 LKHI  138 (139)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8765

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=99.38  E-value=6.8e-13  Score=116.62  Aligned_cols=134  Identities=19%  Similarity=0.255  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c----c-CCHH-------HHHHHHH--hcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L----Q-QNPL-------VQRVIDI--FDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~----~-~~~~-------~~~l~~~--~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...++++.+|+.+|.|++|+|+.+||..+.. .    . ....       ....+..  .+.++++.|++++|+..+...
T Consensus         3 ~~~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~   82 (174)
T d2scpa_           3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEM   82 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhh
Confidence            4567899999999999999999999987532 1    1 1111       2233333  267889999999999998876


Q ss_pred             ccCCCc----HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHH
Q psy4132         302 SVKGDR----ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCL  377 (473)
Q Consensus       302 ~~~~~~----~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~  377 (473)
                      ......    ...+..+|+.+|.|++|.++..|+..   ++..                     .|   ++++++..+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~---~l~~---------------------~~---~~~~~~~~~f~  135 (174)
T d2scpa_          83 VKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI---FFGM---------------------LG---LDKTMAPASFD  135 (174)
T ss_dssp             TSCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHH---HHHH---------------------TT---CCGGGHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHH---HHHH---------------------Hh---hhhHHHHHHHh
Confidence            444332    34578899999999996666543333   3221                     12   66778999999


Q ss_pred             HhccCCCCCeeHHhhhccce
Q psy4132         378 ALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       378 ~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .+|.|+||.|+++||+.+++
T Consensus       136 ~~D~d~dG~Is~~Ef~~~~~  155 (174)
T d2scpa_         136 AIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             HHCTTCSSEECHHHHHHHHH
T ss_pred             hcCCCCCCcEeHHHHHHHHH
Confidence            99999999999999998775

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=5.5e-13  Score=114.01  Aligned_cols=129  Identities=19%  Similarity=0.303  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      +++..+|+++|+.+|.       ..++...+...|.+++..  .+.....  ..+.++.+.++|.+|...+....   ..
T Consensus         6 ~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~   78 (146)
T d1lkja_           6 EEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEA--EVNDLMN--EIDVDGNHQIEFSEFLALMSRQL---KS   78 (146)
T ss_dssp             HHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCCHH--HHHHHHH--HHCSSSCCEEEHHHHHHHHHHHT---CC
T ss_pred             HHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhcCCCCCHH--HHHHHHH--HhccCCcccccHHHHHHHHHHhh---cc
Confidence            4455779999999999       788888999999888876  4444433  36778889999999999876322   22


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      ....+.++.+|+.+|.+++|+|+.+||+.++ .++   ....++.++..+| |++|.|+|+||+.+|.
T Consensus        79 ~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dG~I~~~eF~~~m~  145 (146)
T d1lkja_          79 NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALLS  145 (146)
T ss_dssp             CCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHHHHC-CSSSEEEHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHHhcc-CCCCeEeHHHHHHHhC
Confidence            3346789999999999999999999999853 333   2335889999999 9999999999999885

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=4.6e-13  Score=114.49  Aligned_cols=127  Identities=18%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccch
Q psy4132         164 ETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV  236 (473)
Q Consensus       164 ~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~  236 (473)
                      ++..+|+++|..+|.       ..++...|+.||..++..  +...     .++.+.+|.|+|.+|+.++....   ...
T Consensus         4 ~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~--~~~~-----~~~~~~~g~i~~~eF~~~~~~~~---~~~   73 (145)
T d2mysb_           4 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKN--EELD-----AMIKEASGPINFTVFLTMFGEKL---KGA   73 (145)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchH--HHHH-----HHHHhccCceeechhhhhhhhcc---ccc
Confidence            445679999999999       788889999999776544  2211     24557789999999999886321   223


Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ...+.+..+|+.||.+++|+|+..+|+.++ .++   ....++.+++.+|.|++|.|+|.+|+.+|+.
T Consensus        74 ~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~g~~ls~~e~~~~~~~~d~d~dg~I~y~eF~~~l~~  141 (145)
T d2mysb_          74 DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITH  141 (145)
T ss_pred             chHHHHHHHHHhhhhcccchhhHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhcc
Confidence            345679999999999999999999999964 333   2345889999999999999999999999864

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.4e-13  Score=117.82  Aligned_cols=129  Identities=19%  Similarity=0.325  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccc--cccchHH
Q psy4132         168 NINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI--HKKMVVD  238 (473)
Q Consensus       168 ~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~--~~~~~~~  238 (473)
                      .+++||+.+|.       ..++...|++||.+++..  +++..+.. ..+.+.+|.|+|.+|..++.....  .......
T Consensus         3 ~~k~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~--ei~~l~~~-~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~   79 (146)
T d1m45a_           3 ANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQ--LVQDIINA-DSSLRDASSLTLDQITGLIEVNEKELDATTKAK   79 (146)
T ss_dssp             CCTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHH--HHHHHHHC---CC--CCEEEHHHHHHHHHHTHHHHHGGGCCC
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHHHcCCchhHH--HHhhhhcc-ccccccccccccchhhhhhhhhcccccccccch
Confidence            36899999999       899999999999999887  66655532 345667899999999998863211  1122334


Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .+.+..+|+.+|.+++|+|+.+||+.++ ..+.   ...++.++..+|.|++|.|+|+||+..+.
T Consensus        80 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~g~~l~~~ei~~l~~~~D~d~dG~I~y~eF~~~i~  144 (146)
T d1m45a_          80 TEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL  144 (146)
T ss_dssp             THHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhcccCCcchHHHHHHHHHHhCCCCCCcEEHHHHHHHHH
Confidence            5689999999999999999999999963 3332   33589999999999999999999998764

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.37  E-value=1.6e-12  Score=113.91  Aligned_cols=136  Identities=17%  Similarity=0.200  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcchhc--------cCCHH-----------HHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--------QQNPL-----------VQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--------~~~~~-----------~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..++|+.+|+.+|.|++|+|+.+||+.+...        ...+.           ...++...+.+++|.|++.++...+
T Consensus         5 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   84 (176)
T d1nyaa_           5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVT   84 (176)
T ss_dssp             HHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence            4578999999999999999999999885211        11111           2556777889999999999999988


Q ss_pred             hhcccCCCc-------HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH
Q psy4132         299 SQFSVKGDR-------ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED  371 (473)
Q Consensus       299 ~~~~~~~~~-------~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e  371 (473)
                      .........       ...++.+|..||.|++|.++.+|+..   ++..                     .|   +++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~---~~~~---------------------~~---~~~~~  137 (176)
T d1nyaa_          85 ENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAA---WLTA---------------------LG---MSKAE  137 (176)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH---HHHH---------------------TT---CCHHH
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHH---HHHh---------------------cC---CcHHH
Confidence            766544332       34678899999999996666643333   3221                     12   78999


Q ss_pred             HHHHHHHhccCCCCCeeHHhhhccceeee
Q psy4132         372 LLNSCLALDKLPDSPIYLKTYSSGVKVLQ  400 (473)
Q Consensus       372 i~~~~~~~D~~~dg~Is~~EF~~~~~vl~  400 (473)
                      +..+|..+|.|+||.|+++||+.+++-..
T Consensus       138 ~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~  166 (176)
T d1nyaa_         138 AAEAFNQVDTNGNGELSLDELLTAVRDFH  166 (176)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHSCCS
T ss_pred             HHHHHHHHCCCCCCcEeHHHHHHHHHHHh
Confidence            99999999999999999999998876443

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.35  E-value=1.1e-12  Score=106.34  Aligned_cols=83  Identities=22%  Similarity=0.410  Sum_probs=68.5

Q ss_pred             CCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c---c---CCHHHHHHHHHhcCC
Q psy4132         212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L---Q---QNPLVQRVIDIFDED  284 (473)
Q Consensus       212 d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~---~---~~~~~~~l~~~~D~d  284 (473)
                      +++|.|+|.||+.+++.      .......++.+|+.+|.|++|+|+.+||+.++. +   +   ....++.+++.+|.|
T Consensus        19 d~dG~idf~EF~~~~~~------~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D~d   92 (109)
T d1pvaa_          19 KAEGSFNHKKFFALVGL------KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKD   92 (109)
T ss_dssp             CSTTCCCHHHHHHHHTC------TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTT
T ss_pred             CCCCCCcHHHHHHHHHH------ccCCHHHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHCCC
Confidence            56788999999999872      223456788999999999999999999998642 2   2   234588999999999


Q ss_pred             CCCcccHHHHHHHHhh
Q psy4132         285 RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~~  300 (473)
                      ++|.|+|+||+.+|..
T Consensus        93 ~dG~I~~~EF~~~m~~  108 (109)
T d1pvaa_          93 GDGKIGIDEFETLVHE  108 (109)
T ss_dssp             CSSSBCHHHHHHHHHC
T ss_pred             CcCcEeHHHHHHHHHh
Confidence            9999999999998853

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=99.33  E-value=3.7e-12  Score=113.40  Aligned_cols=139  Identities=19%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcc------hhccCCHH--------HHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSL------PELQQNPL--------VQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l------~~~~~~~~--------~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .+..++.++.+|..+|.|++|+|+.+||...      ..++..+.        .+..+...+....+.|++.+|...+..
T Consensus         9 ~~~~i~r~k~~F~~~D~d~dG~I~~~E~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~   88 (189)
T d1qv0a_           9 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQ   88 (189)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhccccCCCceehHHHHHHHHH
Confidence            3456778999999999999999999999763      22333332        233455667788999999999998865


Q ss_pred             cccC----------CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHH
Q psy4132         301 FSVK----------GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPE  370 (473)
Q Consensus       301 ~~~~----------~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~  370 (473)
                      ....          ....+.+..+|+.+|.|++|.++..|+..++..+                        |. .++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~------------------------g~-~~~~~  143 (189)
T d1qv0a_          89 LATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS------------------------GI-SPSQE  143 (189)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHH------------------------SS-CCCHH
T ss_pred             HHHHhhhccccccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhc------------------------CC-CCCHH
Confidence            4221          1223456778999999999655554333332222                        21 38899


Q ss_pred             HHHHHHHHhccCCCCCeeHHhhhcccee
Q psy4132         371 DLLNSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       371 ei~~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      ++..+|+.+|.|+||.|+++||+..+..
T Consensus       144 ~~~~lf~~~D~d~dG~Is~~EF~~~~~~  171 (189)
T d1qv0a_         144 DCEATFRHCDLDNAGDLDVDEMTRQHLG  171 (189)
T ss_dssp             HHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            9999999999999999999999877753

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=99.33  E-value=1e-12  Score=106.44  Aligned_cols=83  Identities=22%  Similarity=0.370  Sum_probs=68.3

Q ss_pred             CCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c---c---CCHHHHHHHHHhcCC
Q psy4132         212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L---Q---QNPLVQRVIDIFDED  284 (473)
Q Consensus       212 d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~---~---~~~~~~~l~~~~D~d  284 (473)
                      +.+|.|+|.||+.+++.      .....+.++.+|+.||+|++|+|+.+||+.++. +   +   ....++.+++.+|.|
T Consensus        19 ~~~G~idf~eF~~~~~~------~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~d   92 (109)
T d5pala_          19 KDPGTFDYKRFFHLVGL------KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSD   92 (109)
T ss_dssp             CSTTCCCHHHHHHHHTC------TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTT
T ss_pred             CCCCcCcHHHHHHHHHh------cCCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHHHHHhCCC
Confidence            45688999999998872      223456899999999999999999999998532 2   2   234589999999999


Q ss_pred             CCCcccHHHHHHHHhh
Q psy4132         285 RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~~  300 (473)
                      ++|.|+|+||+.+|..
T Consensus        93 ~dG~I~~~EF~~~m~~  108 (109)
T d5pala_          93 HDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             CSSSEEHHHHHHHHHH
T ss_pred             CCCCEeHHHHHHHHHh
Confidence            9999999999998864

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=99.33  E-value=8.4e-13  Score=116.99  Aligned_cols=135  Identities=13%  Similarity=0.133  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHh-hCCCCCCCccHHHHhcchhc-------cCCH------------HHHHHHHHhcCCCCCcccHHHHH
Q psy4132         236 VVDIRRLGKRFRK-LDLDNSGALSIDEFMSLPEL-------QQNP------------LVQRVIDIFDEDRNGEVDFKEFI  295 (473)
Q Consensus       236 ~~~~~~l~~~F~~-~D~d~~G~Is~~el~~l~~~-------~~~~------------~~~~l~~~~D~d~dG~I~~~EF~  295 (473)
                      ..+..+++.+|+. +|.|++|+|+..||..+...       ....            ....++...|.+++|.|++++|.
T Consensus         4 ~~q~~~i~~~F~~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~   83 (185)
T d2sasa_           4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL   83 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHhCcCCCCcEeeeHhh
Confidence            4567789999997 59999999999999874211       1111            12456778899999999999999


Q ss_pred             HHHhhcccC--------CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCC
Q psy4132         296 QGVSQFSVK--------GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELL  367 (473)
Q Consensus       296 ~~l~~~~~~--------~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~l  367 (473)
                      .++......        ......+..+|+.+|.|++|.++.   +|+..++..                     .|   +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~---~E~~~~l~~---------------------~~---l  136 (185)
T d2sasa_          84 AMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDL---EEFQNYCKN---------------------FQ---L  136 (185)
T ss_dssp             HHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCH---HHHHHHTTS---------------------SC---C
T ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHccCCCccCCH---HHHHHHHHH---------------------cC---C
Confidence            998754322        223456889999999999955555   344444331                     12   6


Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +++++..+|+.+|.|+||.|+++||.....
T Consensus       137 ~~~~~~~~f~~~D~d~dG~i~~~EF~~~~~  166 (185)
T d2sasa_         137 QCADVPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             CCSSHHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCCCcHHHHHHHHH
Confidence            778899999999999999999999987764

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.3e-12  Score=113.88  Aligned_cols=137  Identities=20%  Similarity=0.298  Sum_probs=95.3

Q ss_pred             HHHHHHHhhhh-----hhhHHHHHHHHhhhhhhhhhhh-hcccccccccCCCCCceeHHHHHHHHccccccccchHHHHH
Q psy4132         168 NINNAFKDLNQ-----LMSMAKEMVEISKNISNKIINR-QGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR  241 (473)
Q Consensus       168 ~l~eaF~~lD~-----~~e~~~~l~~lg~~~~~~~~~~-~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~  241 (473)
                      .+...|...+.     ..+....+..++......  .. ..++  ..+|.+++|.|+|.||+..+...    ......+.
T Consensus        26 ~l~~~F~~~~~~g~i~~~ef~~~~~~~~~~~~~~--~~~~~if--~~~d~~~dg~I~~~EF~~~l~~~----~~~~~~e~   97 (187)
T d1g8ia_          26 QWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPT--KFATFVF--NVFDENKDGRIEFSEFIQALSVT----SRGTLDEK   97 (187)
T ss_dssp             HHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTH--HHHHHHH--HHHCTTCSSEEEHHHHHHHHHHH----HHCCHHHH
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHHHhcCCCCHH--HHHHHHH--HHhCcCCCCCCcHHHHHHHHHHh----ccCchhhh
Confidence            44555555553     555666666665544332  11 1122  24799999999999999988721    12345668


Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchhc----c------------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPEL----Q------------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG  305 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~~----~------------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~  305 (473)
                      ++.+|+.+|.|++|+|+.+|+..+...    .            ....++.+|+.+|.|+||.|+|+||+.++..-    
T Consensus        98 l~~~F~~~D~d~dG~i~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~----  173 (187)
T d1g8ia_          98 LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKAD----  173 (187)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHC----
T ss_pred             HHHHHHHHhcCCCCeEcHHHHHHHHHHHhhhhcccccCchhhccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHC----
Confidence            999999999999999999999885321    0            01247889999999999999999999988754    


Q ss_pred             CcHHHHHHHhHHhc
Q psy4132         306 DRESKLKFAFRIYD  319 (473)
Q Consensus       306 ~~~e~l~~~F~~~D  319 (473)
                         ..+.+.|..||
T Consensus       174 ---p~~~~~l~~~~  184 (187)
T d1g8ia_         174 ---PSIVQALSLYD  184 (187)
T ss_dssp             ---HHHHHHHCCBT
T ss_pred             ---HHHHHHHHHhh
Confidence               45555566555

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=99.29  E-value=1.3e-11  Score=109.37  Aligned_cols=137  Identities=19%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcch------hccCCHH--------HHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLP------ELQQNPL--------VQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~------~~~~~~~--------~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +...++++.+|+.+|.|++|+|+.+||..+.      .++..+.        ............++.+++.+|+..+...
T Consensus         8 p~~~~~~k~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (187)
T d1uhka1           8 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKL   87 (187)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhhhcccccccccccHHHHHHHHHHH
Confidence            4457889999999999999999999998732      2233332        2333444556777889999998887654


Q ss_pred             ccC----------CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHH
Q psy4132         302 SVK----------GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPED  371 (473)
Q Consensus       302 ~~~----------~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~e  371 (473)
                      ...          ......+..+|+.+|.|++|.++.+|+..++..+                        | ..+++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~------------------------g-~~~~~~~  142 (187)
T d1uhka1          88 ATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAA------------------------G-IIQSSED  142 (187)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH------------------------T-SCCSHHH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHh------------------------C-CCccHHH
Confidence            221          1223457889999999999666664333333222                        2 1488999


Q ss_pred             HHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         372 LLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       372 i~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      +..+|+.+|.|+||.|+++||+..+.
T Consensus       143 ~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1         143 CEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             HHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            99999999999999999999987664

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=99.28  E-value=2.3e-12  Score=124.18  Aligned_cols=182  Identities=11%  Similarity=0.095  Sum_probs=129.9

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHH
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK  310 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~  310 (473)
                      .......++.+|..+|.|++|.|+.+||+.++ ..+   ....+..++..+|.|++|.|+|.||+..+...       ..
T Consensus       117 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~-------~~  189 (321)
T d1ij5a_         117 SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDL-------AA  189 (321)
T ss_dssp             CHHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHHH-------HT
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHcCCcccHHHHHHHHHHHhhcCCccccchhhhhhhhhh-------hh
Confidence            45667789999999999999999999999853 332   23468999999999999999999998877654       33


Q ss_pred             HHHHhHHhcCCCCchhhHhhHHHHHHHHh------------chhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy4132         311 LKFAFRIYDIDNDDDYYQALGNELIAALI------------EPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLA  378 (473)
Q Consensus       311 l~~~F~~~D~d~dg~~~~~e~~el~~~L~------------~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~  378 (473)
                      +..+|+.+|.+++|.+...++........            .......+.+...++.+.....        ..+..+|..
T Consensus       190 ~~~~F~~~d~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~--------~~~~~~F~~  261 (321)
T d1ij5a_         190 LVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCL--------LVLRILYAF  261 (321)
T ss_dssp             SCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH--------HHHHHHHHH
T ss_pred             hhHHHHHHhhcccccchhHHHhhhhhcccccchHHHHHHHHhhhcccccccccccccchhhhh--------hHHHHHHHH
Confidence            44578999999998777765544322221            1222344566666655444432        235678999


Q ss_pred             hccCCCCCeeHHhhhccceeeeecccCcHHHHHHHHHHHhh--CCCCCHHHHHHhh
Q psy4132         379 LDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQ--NVFVTVEQFSRLA  432 (473)
Q Consensus       379 ~D~~~dg~Is~~EF~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~ls~~e~a~~~  432 (473)
                      +|.|++|.|+..||...+..+.....++ ..+..++..++.  .|.||..||.+.+
T Consensus       262 ~D~d~~G~Is~~E~~~~l~~~~~~~~~~-~~~~~l~~~~D~d~dG~Is~~EF~~~m  316 (321)
T d1ij5a_         262 ADFDKSGQLSKEEVQKVLEDAHIPESAR-KKFEHQFSVVDVDDSKSLSYQEFVMLV  316 (321)
T ss_dssp             TCSSSCSSEEHHHHHHHHHHTTCCGGGC-STHHHHHHHHTTTTCSEECHHHHHHHH
T ss_pred             HhcCCCCCCcHHHHHHHHHHcCCCcCcH-HHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            9999999999999998887554322222 234566666544  5789999998764

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=5.5e-12  Score=112.72  Aligned_cols=137  Identities=20%  Similarity=0.297  Sum_probs=90.6

Q ss_pred             HHHHHHHhhhh-----hhhHHHHHHHHhhhhhhhhhh-hhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHH
Q psy4132         168 NINNAFKDLNQ-----LMSMAKEMVEISKNISNKIIN-RQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR  241 (473)
Q Consensus       168 ~l~eaF~~lD~-----~~e~~~~l~~lg~~~~~~~~~-~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~  241 (473)
                      .+.+.|...+.     ..+....+..++......  . .+.++  ..+|.+++|.|+|.||+..+..-    ......+.
T Consensus        29 ~l~~~F~~~~~~G~i~~~ef~~~~~~~~~~~~~~--~~~~~if--~~~D~~~~G~I~~~Ef~~~~~~~----~~~~~~e~  100 (190)
T d1fpwa_          29 QWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPE--DFANHLF--TVFDKDNNGFIHFEEFITVLSTT----SRGTLEEK  100 (190)
T ss_dssp             HHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCS--HHHHHHH--HTCCSSCSSEECHHHHHHHHHHH----SCCCSTHH
T ss_pred             HHHHHHHHHCCCCCccHHHHHHHHHHHCCCCChH--HHHHHHH--HHhCcCCCCcccHHHHHHHHHHH----ccCchHHH
Confidence            34445544433     566666666666544332  1 12222  24788999999999998877621    12234577


Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchhcc---------C-------CHHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCC
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPELQ---------Q-------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKG  305 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~~~---------~-------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~  305 (473)
                      ++.+|+.+|.|++|.|+.+|+..+....         .       ...++.+|+.+|.|+||.|+|+||..++..-    
T Consensus       101 ~~~~F~~~D~d~dG~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~~----  176 (190)
T d1fpwa_         101 LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVD----  176 (190)
T ss_dssp             HHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSS----
T ss_pred             HHHHHHHhccCCCCcCcHHHHHHHHHHHHHhcccccCCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC----
Confidence            8889999999999999999988742110         0       1237888999999999999999999887653    


Q ss_pred             CcHHHHHHHhHHhc
Q psy4132         306 DRESKLKFAFRIYD  319 (473)
Q Consensus       306 ~~~e~l~~~F~~~D  319 (473)
                         ..+..+|..||
T Consensus       177 ---p~i~~~l~~~d  187 (190)
T d1fpwa_         177 ---PSIIGALNLYD  187 (190)
T ss_dssp             ---TTHHHHHHHHH
T ss_pred             ---HHHHHHhhhhc
Confidence               33445666655

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=99.24  E-value=1.7e-11  Score=99.19  Aligned_cols=97  Identities=25%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT  352 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~  352 (473)
                      .+.+++..++  .+|.|+|.||+.++..   ....++.++.+|+.||+|++|.++..   ||..+|.....         
T Consensus        10 di~~~~~~~~--~~G~idf~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~---El~~~l~~l~~---------   72 (109)
T d5pala_          10 DINKAISAFK--DPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQSGFIEEE---ELKGVLKGFSA---------   72 (109)
T ss_dssp             HHHHHHHHTC--STTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHCTTCSSEECHH---HHHTHHHHHCT---------
T ss_pred             HHHHHHHhcC--CCCcCcHHHHHHHHHh---cCCCHHHHHHHHhhhcCCCCCeEcHH---HHHHHHHHhhh---------
Confidence            4567777665  4689999999987753   34567899999999999999666664   44443332111         


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         353 DAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       353 d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                               .| +.++.+++.++++.+|.|+||.|+|+||...+
T Consensus        73 ---------~g-~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~m  106 (109)
T d5pala_          73 ---------HG-RDLNDTETKALLAAGDSDHDGKIGADEFAKMV  106 (109)
T ss_dssp             ---------TC-CCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred             ---------cc-CcCCHHHHHHHHHHhCCCCCCCEeHHHHHHHH
Confidence                     11 24889999999999999999999999998654

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.24  E-value=1.3e-11  Score=99.87  Aligned_cols=97  Identities=21%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT  352 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~  352 (473)
                      .+.+++..+  +++|.|+|.||+.++...   ...++.++.+|+.||+|++|.++.   +||..+|.....         
T Consensus        10 eI~~~~~~~--d~dG~idf~EF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~---~El~~~l~~l~~---------   72 (109)
T d1pvaa_          10 DIKKALDAV--KAEGSFNHKKFFALVGLK---AMSANDVKKVFKAIDADASGFIEE---EELKFVLKSFAA---------   72 (109)
T ss_dssp             HHHHHHHHT--CSTTCCCHHHHHHHHTCT---TSCHHHHHHHHHHHCTTCSSSBCH---HHHHTGGGGTCT---------
T ss_pred             HHHHHHHhc--CCCCCCcHHHHHHHHHHc---cCCHHHHHHHhhCccCCCcCeEcH---HHHHHHHHHhhh---------
Confidence            455566655  467889999999887643   456788999999999999966655   444444443211         


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         353 DAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       353 d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                               .| ..+|++++..+++.+|.|+||.|+++||...+
T Consensus        73 ---------~g-~~ls~~ev~~~~~~~D~d~dG~I~~~EF~~~m  106 (109)
T d1pvaa_          73 ---------DG-RDLTDAETKAFLKAADKDGDGKIGIDEFETLV  106 (109)
T ss_dssp             ---------TC-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             ---------cC-CCCCHHHHHHHHHHHCCCCcCcEeHHHHHHHH
Confidence                     01 24889999999999999999999999998754

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.22  E-value=1.5e-11  Score=99.14  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc------CCHHHHHHHHHhcCC
Q psy4132         212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ------QNPLVQRVIDIFDED  284 (473)
Q Consensus       212 d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~------~~~~~~~l~~~~D~d  284 (473)
                      +.+|.|+|.||+..++.      .....++++.+|+.+|.+++|+|+..||+.++ .++      ....++.+++.+|.|
T Consensus        18 ~~~gsi~~~eF~~~~~l------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~d   91 (107)
T d2pvba_          18 SAADSFKHKEFFAKVGL------ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKD   91 (107)
T ss_dssp             CSTTCCCHHHHHHHHTG------GGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTT
T ss_pred             cCCCCcCHHHHHHHHhc------ccCCHHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHHHHhCCC
Confidence            34567999999998872      23456689999999999999999999999953 322      223589999999999


Q ss_pred             CCCcccHHHHHHHHh
Q psy4132         285 RNGEVDFKEFIQGVS  299 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~  299 (473)
                      ++|.|+|+||+.+|.
T Consensus        92 ~dG~I~~~EF~~~m~  106 (107)
T d2pvba_          92 GDGMIGVDEFAAMIK  106 (107)
T ss_dssp             CSSSBCHHHHHHHHH
T ss_pred             CCCcEeHHHHHHHHc
Confidence            999999999998874

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=9e-12  Score=111.15  Aligned_cols=59  Identities=22%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchh----ccCCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPE----LQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~----~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..+..+|+.+|.|++|.|+..||.....    ......+..+|+.+|.|++|.|++.||..++
T Consensus        58 ~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~E~~~~~  120 (189)
T d1jbaa_          58 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIV  120 (189)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHHHHHHHHCSSCSSCBCHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCeEeehhHHHHHHhhcccchHHHHHHHHhhhccCCCCcccHhHHHHHH
Confidence            3344455555555555555555544211    1112234444555555555555555544443

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.20  E-value=1.6e-11  Score=99.42  Aligned_cols=83  Identities=23%  Similarity=0.343  Sum_probs=68.4

Q ss_pred             CCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc------CCHHHHHHHHHhcCC
Q psy4132         212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ------QNPLVQRVIDIFDED  284 (473)
Q Consensus       212 d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~------~~~~~~~l~~~~D~d  284 (473)
                      +.+|.|+|.+|+.+++.      .......++.+|+.||.|++|+|+.+||+.++. ++      ....++.+++.+|.|
T Consensus        19 ~~~~~i~f~eF~~~~~~------~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d   92 (109)
T d1rwya_          19 TAADSFDHKKFFQMVGL------KKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKD   92 (109)
T ss_dssp             CSTTCCCHHHHHHHHTG------GGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTT
T ss_pred             ccCCCcCHHHHHHHHcc------ccCCHHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCCC
Confidence            44578999999999872      234566889999999999999999999999542 21      234589999999999


Q ss_pred             CCCcccHHHHHHHHhh
Q psy4132         285 RNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       285 ~dG~I~~~EF~~~l~~  300 (473)
                      ++|.|+|+||+.+|..
T Consensus        93 ~dG~i~~~EF~~~m~~  108 (109)
T d1rwya_          93 GDGKIGVEEFSTLVAE  108 (109)
T ss_dssp             CSSSEEHHHHHHHHHT
T ss_pred             CCCeEeHHHHHHHHHh
Confidence            9999999999998863

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.18  E-value=4.5e-12  Score=112.57  Aligned_cols=127  Identities=17%  Similarity=0.366  Sum_probs=98.2

Q ss_pred             HHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHH
Q psy4132         167 SNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI  239 (473)
Q Consensus       167 ~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~  239 (473)
                      ..|+++|+.+|.       ..++...|..++..++..  +....+.  .+|.+++|.|+|.+|+.++....    .....
T Consensus        10 ~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l~~~~~~~--~~~~~~~--~~d~~~~g~i~~~ef~~~~~~~~----~~~~~   81 (182)
T d1s6ia_          10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES--EIKDLMD--AADIDKSGTIDYGEFIAATVHLN----KLERE   81 (182)
T ss_dssp             CSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHH--HHHHHHH--HTCTTCSSEECHHHHHHHHTTSS----SSCCC
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHHHcCCccccc--cchhhhh--hhhccccccchHHHHHHHHHhhc----ccccH
Confidence            468899999998       778888888888888766  4554444  37888999999999998776321    11223


Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hcc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.+..+|+.+|.+++|+|+..+|+.+. ..+ ....++.+|+.+|.|+||.|+|+||+.+|...
T Consensus        82 e~l~~aF~~~D~d~~G~i~~~el~~~l~~~gl~~~ev~~~f~~~D~d~DG~Is~~EF~~~m~~~  145 (182)
T d1s6ia_          82 ENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKR  145 (182)
T ss_dssp             CSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHHHHHHCSSSSSEEETTHHHHTTSCC
T ss_pred             HHHHHHHHHHhhcCCCccchhhhhhhhhhcCccHHHHHHHHHHhhcCCCCeEeHHHHHHHHHhC
Confidence            467889999999999999999998853 232 34468899999999999999999999988755

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.1e-11  Score=105.09  Aligned_cols=128  Identities=23%  Similarity=0.352  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccc
Q psy4132         163 KETSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM  235 (473)
Q Consensus       163 ~~~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~  235 (473)
                      .+...+|+++|..+|+       ..++...+ .++.++.     ...++.  .+|.+++|.|+|.||+..+....   ..
T Consensus        12 ~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~-~~~~~~~-----~~~l~~--~~d~~~~g~i~~~EFl~~~~~~~---~~   80 (165)
T d1auib_          12 ADEIKRLGKRFKKLDLDNSGSLSVEEFMSLP-ELQQNPL-----VQRVID--IFDTDGNGEVDFKEFIEGVSQFS---VK   80 (165)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEECHHHHTTSH-HHHTCTT-----HHHHHH--HHCTTCSSSEEHHHHHHHHGGGC---TT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHhh-hccCCHH-----HHHHHH--HHccccchhhhhhhhhhhccccc---cc
Confidence            3455679999999998       33333222 2222221     122222  37899999999999999887422   22


Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc--cC-------CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL--QQ-------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~--~~-------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ......+..+|+.+|.+++|+|+.+|+..+...  +.       ...++.++..+|.|++|.|+|+||+.+|...
T Consensus        81 ~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dG~Is~~EF~~i~~~~  155 (165)
T d1auib_          81 GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL  155 (165)
T ss_dssp             CCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCTTSSSSEEHHHHHHHHGGG
T ss_pred             hhhHHHHHHHHHHhcccccccccHHHHHHHHHHhccccCchHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHHhcC
Confidence            345677899999999999999999999985322  11       1136788999999999999999999988755

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=3.5e-11  Score=97.11  Aligned_cols=83  Identities=23%  Similarity=0.317  Sum_probs=68.3

Q ss_pred             CCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c---c---CCHHHHHHHHHhcC
Q psy4132         211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L---Q---QNPLVQRVIDIFDE  283 (473)
Q Consensus       211 ~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~---~---~~~~~~~l~~~~D~  283 (473)
                      .+.+|.++|.+|+..++      ........++++|+.||.|++|+|+.+||+.++. +   +   ....++.+++.+|.
T Consensus        18 ~~~~~s~~~~~F~~~~~------~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~~~~~~~~~D~   91 (108)
T d1rroa_          18 CQDPDTFEPQKFFQTSG------LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN   91 (108)
T ss_dssp             TCSTTCCCHHHHHHHHS------GGGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCC
T ss_pred             cccCCCccHHHHHHHHc------cCcCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCC
Confidence            35667899999988776      2334567889999999999999999999998643 2   1   22468999999999


Q ss_pred             CCCCcccHHHHHHHHh
Q psy4132         284 DRNGEVDFKEFIQGVS  299 (473)
Q Consensus       284 d~dG~I~~~EF~~~l~  299 (473)
                      |++|.|+|+||+.+|+
T Consensus        92 d~dG~I~~~EF~~~m~  107 (108)
T d1rroa_          92 DGDGKIGADEFQEMVH  107 (108)
T ss_dssp             SSSSSEEHHHHHHHHT
T ss_pred             CCCCeEeHHHHHHHHc
Confidence            9999999999999874

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=3.4e-11  Score=106.43  Aligned_cols=90  Identities=24%  Similarity=0.415  Sum_probs=65.7

Q ss_pred             cccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc----------------CC
Q psy4132         208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ----------------QN  271 (473)
Q Consensus       208 ~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~----------------~~  271 (473)
                      .+|.+++|.|+|.||+..+...    ......+.++.+|+.+|.|++|+|+.+|+..+....                ..
T Consensus        67 ~~d~~~~g~i~~~eFl~~~~~~----~~~~~~~~~~~~f~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (181)
T d1bjfa_          67 TFDANGDGTIDFREFIIALSVT----SRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPE  142 (181)
T ss_dssp             HHCSSCSSEEEHHHHHHHHHHH----TSSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHH
T ss_pred             hcCCCCCCcEeHHHHHHHHHHH----hhhchHHHHHHHHHHhccCCCCeecHHHHHHHHHHHhhhccccccCCcccccHH
Confidence            3688888889999988877621    223455678888889999999999988888742210                01


Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..++.+|+.+|.|+||.|+|+||+.++...
T Consensus       143 ~~~~~if~~~D~d~dG~Is~~EF~~~~~~~  172 (181)
T d1bjfa_         143 KRTEKIFRQMDTNRDGKLSLEEFIRGAKSD  172 (181)
T ss_dssp             HHHHHHHHHSCTTCSSEECHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            236788888888888888888888877543

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=5e-11  Score=107.21  Aligned_cols=114  Identities=18%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCcc
Q psy4132         179 LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALS  258 (473)
Q Consensus       179 ~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is  258 (473)
                      ..+....|..++...... ...+.++  ..+|.+++|.|+|.||+..+...    ......+.++.+|+.+|.|++|+|+
T Consensus        45 ~~EF~~~l~~~~~~~~~~-~~~~~if--~~~D~~~~G~I~f~EF~~~~~~~----~~~~~~~~l~~~F~~~D~d~~G~is  117 (201)
T d1omra_          45 RQEFQTIYSKFFPEADPK-AYAQHVF--RSFDANSDGTLDFKEYVIALHMT----SAGKTNQKLEWAFSLYDVDGNGTIS  117 (201)
T ss_dssp             HHHHHHHHHHHCTTSCCH-HHHHHHH--HTTTSCSSSEEEHHHHHHHHHHH----HSSCGGGSHHHHHHHHCTTCSSSBC
T ss_pred             HHHHHHHHHHhcCCCCHH-HHHHHHH--HHhccCCCCeEeehhHHHHHHhh----cccchHHHHHHHHHHHccCCCCccC
Confidence            455555666665443322 0111222  23677788888888887766521    1122334577778888888888888


Q ss_pred             HHHHhcchhc----cC--------------CHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         259 IDEFMSLPEL----QQ--------------NPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       259 ~~el~~l~~~----~~--------------~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                      .+|+..+...    ..              ...++.+|..+|.|+||.|+|+||+.++.
T Consensus       118 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~  176 (201)
T d1omra_         118 KNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTL  176 (201)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence            8887763211    00              01256777778888888888888877664

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=4.7e-11  Score=105.76  Aligned_cols=89  Identities=16%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc-----cC--C-----HHHHH
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-----QQ--N-----PLVQR  276 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~-----~~--~-----~~~~~  276 (473)
                      +|.+++|.|+|.||+..+...   .........++.+|+.+|.|++|.|+.+|++.+...     +.  .     ..++.
T Consensus        63 ~d~~~dg~I~f~EFl~~l~~~---~~~~~~~~~~~~~F~~~D~d~~G~Is~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (183)
T d2zfda1          63 FDTKHNGILGFEEFARALSVF---HPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDK  139 (183)
T ss_dssp             HCSSCSSSBCHHHHHHHHHHT---STTSCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HccCCCCcCcHHHHHHHHHhh---hccCcHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence            677777777777777766411   112234456777777777777777777777774211     11  1     12456


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         277 VIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       277 l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +|..+|.|++|.|+|+||..++..
T Consensus       140 if~~~D~d~dG~Is~~EF~~~~~~  163 (183)
T d2zfda1         140 TFEEADTKHDGKIDKEEWRSLVLR  163 (183)
T ss_dssp             HHHHHCSSCSSEECHHHHHHHHHH
T ss_pred             HHHHhCCCCCCeEcHHHHHHHHHH
Confidence            677777777777777777777653

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=7.1e-11  Score=104.01  Aligned_cols=132  Identities=12%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             HhHHHHHHHHHHHHhh---hh-----hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHcccccc
Q psy4132         161 KQKETSSNINNAFKDL---NQ-----LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH  232 (473)
Q Consensus       161 ~~~~~~~~l~eaF~~l---D~-----~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~~~  232 (473)
                      +..=+..+++.+|+.|   |.     ..+....+..++....... ..+.++.  .+|.+++|.|+|.||+..+...   
T Consensus         7 ~t~ft~~ei~~l~~~F~~~~~~G~is~~ef~~~l~~~~~~~~~~~-~~~~lf~--~~D~~~~g~I~~~EFl~~~~~~---   80 (178)
T d1s6ca_           7 QTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDAST-YAHYLFN--AFDTTQTGSVKFEDFVTALSIL---   80 (178)
T ss_dssp             HSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHH-HHHHHHH--HHCTTCSSCEEHHHHHHHHHHH---
T ss_pred             cCCCCHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHhCCCCCHHH-HHHHHHH--HHCCCCCCcccHHHHHHHHHHH---
Confidence            3333445555554444   32     4555555666554432220 1122332  3688888999999998877521   


Q ss_pred             ccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh----cc------------CCHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE----LQ------------QNPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       233 ~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~----~~------------~~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                       ......+.+..+|+.+|.+++|.|+.+|+..+..    ..            ....++.+|+.+|.|+||.|+|+||..
T Consensus        81 -~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~  159 (178)
T d1s6ca_          81 -LRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE  159 (178)
T ss_dssp             -HHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             -hccchHHHHHHHHHhhccCCCCeecHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence             1223456788889999999999999888877311    10            012356788888999999999999988


Q ss_pred             HHh
Q psy4132         297 GVS  299 (473)
Q Consensus       297 ~l~  299 (473)
                      ++.
T Consensus       160 ~i~  162 (178)
T d1s6ca_         160 SCQ  162 (178)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            764

>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=7.5e-11  Score=89.89  Aligned_cols=78  Identities=15%  Similarity=0.319  Sum_probs=70.5

Q ss_pred             chhhHhhHHHHHHHHhchhhcCCC-----ccchhHHHHHHHhhh--CCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         324 DDYYQALGNELIAALIEPLTSAGG-----TMLLTDAYCRINRAR--GLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       324 g~~~~~e~~el~~~L~~~~~~~~g-----~i~l~d~~~~~~~~~--g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      ..|+.++++++.+++.....+.+|     +|++.|+||.+||++  |++++||+|+.++|+.+++-+=.++.+..|.+++
T Consensus        10 ~lyh~ELArqlae~l~~~~k~~~g~~~~~mItL~Dly~~~NRaR~~G~eLiSP~D~~~Ac~~~e~l~L~p~~Lr~f~sgv   89 (94)
T d1u5tb1          10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRI   89 (94)
T ss_dssp             TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEEEEETTTE
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhCCCCCcceeeHHHHHHHHHHhhhcCCcccCHHHHHHHHHHHHhCCCCceEEEEecCce
Confidence            378888999999999987765544     899999999999999  8999999999999999999976799999999999


Q ss_pred             eeeee
Q psy4132         397 KVLQL  401 (473)
Q Consensus       397 ~vl~~  401 (473)
                      .|++.
T Consensus        90 lvv~s   94 (94)
T d1u5tb1          90 LCVTS   94 (94)
T ss_dssp             EEEES
T ss_pred             EEeeC
Confidence            99873

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.05  E-value=3e-10  Score=91.32  Aligned_cols=98  Identities=19%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT  352 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~  352 (473)
                      .+..++..++.  +|.|+|.||+..+...   ....+.++.+|+.||.|++|.+..   .++..++.....         
T Consensus         9 di~~~~~~~~~--~gsi~~~eF~~~~~l~---~~~~~~l~~~F~~~D~d~~G~I~~---~el~~~l~~l~~---------   71 (107)
T d2pvba_           9 DVAAALAACSA--ADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEE---DELKLFLQNFSP---------   71 (107)
T ss_dssp             HHHHHHHHTCS--TTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCH---HHHHTGGGGTCT---------
T ss_pred             HHHHHHHhccC--CCCcCHHHHHHHHhcc---cCCHHHHHHHHHhhccCCCCcCcH---HHHHHHHHHhhc---------
Confidence            46677887765  4679999999888643   346678999999999999965555   455555443211         


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         353 DAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       353 d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                               .+ +.++++++.++++.+|.|+||.|+++||...++
T Consensus        72 ---------~~-~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~m~  106 (107)
T d2pvba_          72 ---------SA-RALTDAETKAFLADGDKDGDGMIGVDEFAAMIK  106 (107)
T ss_dssp             ---------TS-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             ---------cc-ccCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence                     01 248999999999999999999999999987653

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.05  E-value=2.7e-10  Score=91.97  Aligned_cols=97  Identities=25%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchh
Q psy4132         273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLT  352 (473)
Q Consensus       273 ~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~  352 (473)
                      .+..++..++  .+|.|+|.+|+.++...   ...++.++.+|+.||+|++|.+..   +|+..+|.....         
T Consensus        10 ~i~~~~~~~~--~~~~i~f~eF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~---~El~~~l~~l~~---------   72 (109)
T d1rwya_          10 DIKKAIGAFT--AADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEE---DELGSILKGFSS---------   72 (109)
T ss_dssp             HHHHHHHTTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECH---HHHHTHHHHHCT---------
T ss_pred             HHHHHHHhcc--cCCCcCHHHHHHHHccc---cCCHHHHHHHhhcccCCCCCcCcH---HHHHHHHHHhcc---------
Confidence            4566666664  46889999999988643   346788999999999999965555   344444432110         


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         353 DAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       353 d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                                +...++++++..+++.+|.|+||.|+++||.+.+
T Consensus        73 ----------~~~~~~~~e~~~~~~~~D~d~dG~i~~~EF~~~m  106 (109)
T d1rwya_          73 ----------DARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV  106 (109)
T ss_dssp             ----------TCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred             ----------ccccCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence                      1124889999999999999999999999998754

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=99.05  E-value=7.7e-10  Score=96.54  Aligned_cols=137  Identities=17%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHHHHHHHhhhhhhh---hhh----hhcccccccccCCCCCceeHHHHHHHHcccc
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAKEMVEISKNISNK---IIN----RQGEITEDDSNKDRDGKINFQEFCSIVGNTD  230 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~~l~~lg~~~~~~---~~~----~~~~~~~~~~D~d~dG~I~f~EF~~~~~~~~  230 (473)
                      ..+.++.+|..+|.       ..++...+..++......   ...    ..........+.+++|.|++++|+..+....
T Consensus         4 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~   83 (174)
T d2scpa_           4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMV   83 (174)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhhh
Confidence            34679999999998       455555554443222110   000    0111111124778899999999999886432


Q ss_pred             ccc-cchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         231 IHK-KMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       231 ~~~-~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ... ........+..+|+.+|.|++|+|+.+||..++. .+ ....+..+|..+|.|++|.|+++||+.++..+
T Consensus        84 ~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~f  157 (174)
T d2scpa_          84 KNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDF  157 (174)
T ss_dssp             SCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCGGGHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCCcEeHHHHHHHHHHH
Confidence            222 2233455688999999999999999999998642 32 23458899999999999999999999987654

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=99.00  E-value=9.4e-10  Score=96.75  Aligned_cols=138  Identities=14%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHh-hhh-------hhhHHHHHHHHhhhhhhh-----hhhhhcc------cccccccCCCCCceeHHHHHH
Q psy4132         164 ETSSNINNAFKD-LNQ-------LMSMAKEMVEISKNISNK-----IINRQGE------ITEDDSNKDRDGKINFQEFCS  224 (473)
Q Consensus       164 ~~~~~l~eaF~~-lD~-------~~e~~~~l~~lg~~~~~~-----~~~~~~~------~~~~~~D~d~dG~I~f~EF~~  224 (473)
                      .+.+.++.+|.. ||.       ..+....|..++......     .......      ......|.+++|.|++++|..
T Consensus         5 ~q~~~i~~~F~~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~   84 (185)
T d2sasa_           5 FQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLA   84 (185)
T ss_dssp             HHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHhCcCCCCcEeeeHhhH
Confidence            345569999985 588       556666665554221110     0000000      001235888999999999998


Q ss_pred             HHcccc-----ccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHH
Q psy4132         225 IVGNTD-----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQG  297 (473)
Q Consensus       225 ~~~~~~-----~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~  297 (473)
                      .+....     ...........+..+|+.+|.|++|+|+.+||+.++. .+ ....++.+|..+|.|++|.|+|+||..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~l~~~~~~~~f~~~D~d~dG~i~~~EF~~~  164 (185)
T d2sasa_          85 MWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKEL  164 (185)
T ss_dssp             HHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCcHHHHHHH
Confidence            876321     1122234456788999999999999999999998532 22 2345889999999999999999999988


Q ss_pred             Hhhc
Q psy4132         298 VSQF  301 (473)
Q Consensus       298 l~~~  301 (473)
                      +..+
T Consensus       165 ~~~f  168 (185)
T d2sasa_         165 YYRL  168 (185)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8665

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=99.00  E-value=3.2e-10  Score=86.33  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.++++++++|+.||.|++|+|+..||+.+ ..++  ....+..+++.+|.|++|.|+|+||+.+|...
T Consensus         2 ~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~~~~   70 (81)
T d2opoa1           2 PQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN   70 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHC
Confidence            467889999999999999999999999985 3333  23358999999999999999999999988653

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.2e-10  Score=98.22  Aligned_cols=90  Identities=20%  Similarity=0.406  Sum_probs=70.3

Q ss_pred             ccCC-CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-c-----c---CCH----HH
Q psy4132         209 SNKD-RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-L-----Q---QNP----LV  274 (473)
Q Consensus       209 ~D~d-~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~-----~---~~~----~~  274 (473)
                      +|.+ ++|.|+|.||+..++.-   .......+.++.+|+.+|.|++|+|+.+|+..+.. +     .   ...    .+
T Consensus        66 fd~~~~~g~I~f~EFv~~l~~~---~~~~~~~~kl~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~v  142 (180)
T d1xo5a_          66 FSTSPAKDSLSFEDFLDLLSVF---SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLI  142 (180)
T ss_dssp             HCCSTTCCEECHHHHHHHHHHH---STTSCHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHC------CCCCTTHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHHHHHH---hhcCCHHHHHHHhhccccCCCCCeeeHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            5766 68999999999987621   12234567899999999999999999999998532 1     0   111    26


Q ss_pred             HHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         275 QRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       275 ~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +.+++.+|.|++|.|+|+||..++...
T Consensus       143 ~~~~~~~D~d~dG~Is~~EF~~~~~~~  169 (180)
T d1xo5a_         143 DNILEESDIDRDGTINLSEFQHVISRS  169 (180)
T ss_dssp             HHHHHHHCTTCSSSBCHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence            678999999999999999999988754

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=98.97  E-value=9.8e-10  Score=97.27  Aligned_cols=135  Identities=15%  Similarity=0.160  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhhhh-------hhhHHH-----HHHHHhhhhhhhhhhhhcccc---cccccCCCCCceeHHHHHHHHccc
Q psy4132         165 TSSNINNAFKDLNQ-------LMSMAK-----EMVEISKNISNKIINRQGEIT---EDDSNKDRDGKINFQEFCSIVGNT  229 (473)
Q Consensus       165 ~~~~l~eaF~~lD~-------~~e~~~-----~l~~lg~~~~~~~~~~~~~~~---~~~~D~d~dG~I~f~EF~~~~~~~  229 (473)
                      ..+.++++|..+|.       ..|+..     .++.++..++..  +....+.   ....+...++.|++.+|...+...
T Consensus        12 ~i~r~k~~F~~~D~d~dG~I~~~E~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~   89 (189)
T d1qv0a_          12 WIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQT--KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQL   89 (189)
T ss_dssp             HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHH--HHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCchhH--HHHHHHHHHHhhhccccCCCceehHHHHHHHHHH
Confidence            44579999999999       444443     455666666544  2222111   123466778899999999887631


Q ss_pred             cc-------cccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         230 DI-------HKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       230 ~~-------~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ..       ..........+..+|+.+|.|++|+|+.+||+.+.. .+   ....++.+|+.+|.|+||.|+|+||+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~g~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~  169 (189)
T d1qv0a_          90 ATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH  169 (189)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHH
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            11       111233345677899999999999999999999533 22   23458999999999999999999999888


Q ss_pred             hhc
Q psy4132         299 SQF  301 (473)
Q Consensus       299 ~~~  301 (473)
                      ..+
T Consensus       170 ~~~  172 (189)
T d1qv0a_         170 LGF  172 (189)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.92  E-value=7.5e-10  Score=84.20  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++++++++|+.||.+++|+|+..||+.++ .++.   ...++.++..+|.|++|.|+|+||+.+|...
T Consensus         9 t~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~~m~~k   79 (81)
T d1avsa_           9 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ   79 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence            46678899999999999999999999999953 3333   2358999999999999999999999998753

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=2.6e-09  Score=85.79  Aligned_cols=99  Identities=17%  Similarity=0.100  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccch
Q psy4132         272 PLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLL  351 (473)
Q Consensus       272 ~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l  351 (473)
                      ..+..++..++  .+|.++|.+|+..+..   .....+.++.+|+.||+|++|.+..   +|+..+|.....        
T Consensus         9 ~dI~~~l~~~~--~~~s~~~~~F~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~---~El~~~l~~l~~--------   72 (108)
T d1rroa_           9 EDIAAALQECQ--DPDTFEPQKFFQTSGL---SKMSASQVKDIFRFIDNDQSGYLDG---DELKYFLQKFQS--------   72 (108)
T ss_dssp             HHHHHHHHHTC--STTCCCHHHHHHHHSG---GGSCHHHHHHHHHHHCTTCSSEECT---HHHHTGGGGTCT--------
T ss_pred             HHHHHHHHhcc--cCCCccHHHHHHHHcc---CcCCHHHHHHHHhhhcCCCCCeEcH---HHHHHHHHHHHh--------
Confidence            34556666665  4677999999876643   3446778999999999999965555   444444443211        


Q ss_pred             hHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         352 TDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       352 ~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                                .| ..++++++..+++.+|.|+||.|+++||...++
T Consensus        73 ----------~~-~~l~~~~~~~~~~~~D~d~dG~I~~~EF~~~m~  107 (108)
T d1rroa_          73 ----------DA-RELTESETKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             ----------TS-CCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             ----------cc-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHc
Confidence                      01 248899999999999999999999999987653

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=98.91  E-value=5.6e-10  Score=83.13  Aligned_cols=66  Identities=29%  Similarity=0.487  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +..+..+++.+|+.||.+++|+|+..||+.+ ..++..   ..+..++..+|.+++|.|+|+||+.+|..
T Consensus         3 s~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~~   72 (73)
T d2pq3a1           3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR   72 (73)
T ss_dssp             CHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc
Confidence            4667889999999999999999999999995 344433   35899999999999999999999998864

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=98.90  E-value=2.9e-09  Score=92.43  Aligned_cols=136  Identities=17%  Similarity=0.252  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhhh-------hhhHHHHHHHHhhh----hhhh-hhhhhcc------cccccccCCCCCceeHHHHHHHHc
Q psy4132         166 SSNINNAFKDLNQ-------LMSMAKEMVEISKN----ISNK-IINRQGE------ITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       166 ~~~l~eaF~~lD~-------~~e~~~~l~~lg~~----~~~~-~~~~~~~------~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      .+.|+++|+.+|.       ..+....+..+...    +... .......      -.....|.+++|.|++.++...+.
T Consensus         6 ~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   85 (176)
T d1nyaa_           6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTE   85 (176)
T ss_dssp             HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Confidence            3468999999998       56666666555432    1111 0011000      001135788999999999998776


Q ss_pred             ccccccc----chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         228 NTDIHKK----MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       228 ~~~~~~~----~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .......    .......+..+|..+|.+++|.|+.+||+.+. .++. ...++.+|..+|.|++|.|+|+||+.++..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~  165 (176)
T d1nyaa_          86 NLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDF  165 (176)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSCC
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHhcCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHH
Confidence            4222211    22344578889999999999999999999864 3332 3458999999999999999999999998765

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=8.8e-10  Score=82.49  Aligned_cols=65  Identities=20%  Similarity=0.407  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...++++.+|+.||.+++|+|+..||+.+ ..++..   ..++.+++.+|.+++|.|+|+||+.+|..+
T Consensus         6 ~~eeel~~~F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~~m~~~   74 (75)
T d1jc2a_           6 KSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV   74 (75)
T ss_dssp             CCHHHHHHHHHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEECHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            34568999999999999999999999995 344433   358999999999999999999999998654

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=98.88  E-value=6.3e-10  Score=81.60  Aligned_cols=61  Identities=25%  Similarity=0.507  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcc-hhccC----CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSL-PELQQ----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ++++++|+.||.+++|+|+..||+.+ ..++.    ...++.+++.+|.|++|.|+|+||+.+|.+
T Consensus         2 eel~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~~m~r   67 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKK   67 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            56899999999999999999999995 34433    235899999999999999999999998864

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=9.7e-10  Score=82.72  Aligned_cols=67  Identities=25%  Similarity=0.411  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+++++|+.||.|++|+|+..||+.+ ..++..   ..+..++..+|.+++|.|+|+||+.+|...
T Consensus         5 t~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~m~~~   75 (77)
T d1f54a_           5 TEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQ   75 (77)
T ss_dssp             CHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence            4677889999999999999999999999995 344433   358999999999999999999999988653

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=1e-09  Score=79.66  Aligned_cols=59  Identities=29%  Similarity=0.494  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      ++++.+|+.||++++|+|+.+||+.+. .++.   ...+..++..+|.|++|.|+|+||+.+|
T Consensus         3 eel~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~~m   65 (65)
T d1fw4a_           3 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM   65 (65)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHC
Confidence            578999999999999999999999953 3332   2358999999999999999999999764

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=98.85  E-value=1.9e-09  Score=82.09  Aligned_cols=67  Identities=30%  Similarity=0.394  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHhhCCCC-CCCccHHHHhcc-hhccCC---HHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         234 KMVVDIRRLGKRFRKLDLDN-SGALSIDEFMSL-PELQQN---PLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       234 ~~~~~~~~l~~~F~~~D~d~-~G~Is~~el~~l-~~~~~~---~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      .+..+.+.++.+|+.||.++ +|+|+..||+.+ ..++..   ..++.+++.+|.|++|.|+|+||+.+|++
T Consensus         9 ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~im~~   80 (82)
T d1wrka1           9 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR   80 (82)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHh
Confidence            45678899999999999995 799999999995 344443   35899999999999999999999999875

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=2e-09  Score=80.93  Aligned_cols=65  Identities=29%  Similarity=0.423  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ++.++++++|+.||.|++|+|+..||+.++ .++.   ...+..+++.+|.|++|.|+|+||+.+|.+.
T Consensus         6 d~~e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~~m~k~   74 (77)
T d1oqpa_           6 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKT   74 (77)
T ss_dssp             SHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcCCCCCEechHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHcc
Confidence            456789999999999999999999999953 3332   3358899999999999999999999998654

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=98.82  E-value=1.6e-09  Score=82.32  Aligned_cols=63  Identities=17%  Similarity=0.384  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ..++|+.+|+.||.+++|+|+..||+.++ .++.   ...++.++..+|.|++|.|+|+||+.+|..
T Consensus        13 ~ee~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~dg~I~~~EF~~~m~~   79 (81)
T d1fi5a_          13 TEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG   79 (81)
T ss_dssp             CHHHHHHHHHHHCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            45689999999999999999999999953 3432   335899999999999999999999998854

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=98.82  E-value=6.9e-09  Score=91.32  Aligned_cols=134  Identities=14%  Similarity=0.192  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhhh-------hhhHHHHH-----HHHhhhhhhhhhhhhccccc---ccccCCCCCceeHHHHHHHHcccc
Q psy4132         166 SSNINNAFKDLNQ-------LMSMAKEM-----VEISKNISNKIINRQGEITE---DDSNKDRDGKINFQEFCSIVGNTD  230 (473)
Q Consensus       166 ~~~l~eaF~~lD~-------~~e~~~~l-----~~lg~~~~~~~~~~~~~~~~---~~~D~d~dG~I~f~EF~~~~~~~~  230 (473)
                      .+.++++|+.+|.       ..++...+     +.++..++..  +....+..   .......++.+++.+|+..+....
T Consensus        11 ~~~~k~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (187)
T d1uhka1          11 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQA--KRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLA   88 (187)
T ss_dssp             HHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHhccCccHH--HHHHHHHHhhhhcccccccccccHHHHHHHHHHHH
Confidence            3568999999999       45554433     3344444443  22222211   112345567799999987765311


Q ss_pred             -------ccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc---CCHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q psy4132         231 -------IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGVS  299 (473)
Q Consensus       231 -------~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  299 (473)
                             ...........+..+|+.+|.|++|+|+.+||+.++. ++   ....++.+++.+|.|++|.|+|+||+..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1          89 TDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence                   1112223445688999999999999999999998543 22   234589999999999999999999998776


Q ss_pred             hc
Q psy4132         300 QF  301 (473)
Q Consensus       300 ~~  301 (473)
                      .+
T Consensus       169 ~~  170 (187)
T d1uhka1         169 GF  170 (187)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=98.81  E-value=2.2e-10  Score=88.50  Aligned_cols=80  Identities=25%  Similarity=0.446  Sum_probs=63.0

Q ss_pred             CCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCc
Q psy4132         213 RDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGE  288 (473)
Q Consensus       213 ~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~  288 (473)
                      ++|.|+..+..  |.    ......+...++++|+.||.+++|+|+..||+.++ .++.   ...++.+++.+|.|++|.
T Consensus         2 ~~g~id~~~~~--ma----~~l~~~~i~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~e~~~l~~~~D~d~~g~   75 (87)
T d1s6ja_           2 SSGHIDDDDKH--MA----ERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT   75 (87)
T ss_dssp             CSSSSSSHHHH--SS----SSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSE
T ss_pred             CCCccCchHHH--HH----hhCCHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCe
Confidence            56788887743  33    23345566679999999999999999999999953 4443   335899999999999999


Q ss_pred             ccHHHHHHHH
Q psy4132         289 VDFKEFIQGV  298 (473)
Q Consensus       289 I~~~EF~~~l  298 (473)
                      |+|+||+.+|
T Consensus        76 I~~~EFl~am   85 (87)
T d1s6ja_          76 IDYGEFIAAT   85 (87)
T ss_dssp             ECHHHHTTCC
T ss_pred             EeHHHHHHHH
Confidence            9999998654

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.81  E-value=1.6e-09  Score=77.59  Aligned_cols=57  Identities=26%  Similarity=0.534  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHH
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQ  296 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~  296 (473)
                      ++++++|+.||++++|+|+..||+.++ ..+.   ...++.+++.+|.|++|.|+|+||+.
T Consensus         1 Eel~~aF~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl~   61 (61)
T d2fcea1           1 EDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE   61 (61)
T ss_dssp             HHHHHHHHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSEECHHHHHH
T ss_pred             ChHHHHHHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHhcC
Confidence            478999999999999999999999953 3332   34589999999999999999999974

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.6e-10  Score=96.72  Aligned_cols=138  Identities=9%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             HHHHHHHh--hCCCCCCCccHHHHhcchhccCCH------HHHHHHHHhcCCCCCcccHHHHHHHHhhcccCCCcHHHHH
Q psy4132         241 RLGKRFRK--LDLDNSGALSIDEFMSLPELQQNP------LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK  312 (473)
Q Consensus       241 ~l~~~F~~--~D~d~~G~Is~~el~~l~~~~~~~------~~~~l~~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~e~l~  312 (473)
                      .++++|..  +|.|++|.|+..||.+++......      .+..++...|.+++|.|+|+||..++..+.    ....+.
T Consensus         6 ~l~k~~~k~~~d~n~dG~Is~~el~k~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~----~r~ei~   81 (170)
T d2zkmx1           6 FLDKILVKLKMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC----PRPEID   81 (170)
T ss_dssp             HHHHHHHHHHHSCCTTSCEEHHHHHHHSCSCHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS----CCHHHH
T ss_pred             HHHHHHHHHhcccCCCCCCcHHHHHHHHHHhhhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccC----CHHHHH
Confidence            34555554  799999999999999865332111      234557777899999999999999998774    246788


Q ss_pred             HHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC----CCee
Q psy4132         313 FAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD----SPIY  388 (473)
Q Consensus       313 ~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d----g~Is  388 (473)
                      .+|..||.|++|.++.   +++..+|...-...    ...+.       .. ..++++.+.+++..++.+.+    |.|+
T Consensus        82 ~~F~~~d~d~~~~it~---~el~~fL~~~Q~~~----~~~e~-------~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ls  146 (170)
T d2zkmx1          82 EIFTSYHAKAKPYMTK---EHLTKFINQKQRDS----RLNSL-------LF-PPARPDQVQGLIDKYEPSGINAQRGQLS  146 (170)
T ss_dssp             TTCC--------CCCH---HHHHHHHHHTCC---------------------------CHHHHHHHHCCC--------CC
T ss_pred             HHHHHHcCCCCCcccH---HHHHHHHHHHhcch----hhhhh-------cc-ccCCHHHHHHHHHHHccccccccCCeEC
Confidence            9999999988855555   55666665432211    01110       00 12567778888888877644    8899


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      +++|...+.
T Consensus       147 ~d~F~~fL~  155 (170)
T d2zkmx1         147 PEGMVWFLC  155 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999987653

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=3.9e-09  Score=77.03  Aligned_cols=60  Identities=27%  Similarity=0.501  Sum_probs=51.2

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcch-hccC---CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLP-ELQQ---NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~-~~~~---~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ++++|+.+|.|++|+|+..||+.+. .++.   ...++.++..+|.|++|.|+|+||+.+|...
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~~   66 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM   66 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence            6789999999999999999999953 3332   3358999999999999999999999988653

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.68  E-value=1.6e-08  Score=75.39  Aligned_cols=69  Identities=28%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             CCCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCC
Q psy4132         304 KGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLP  383 (473)
Q Consensus       304 ~~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~  383 (473)
                      .+.+++.++.+|+.||.|++|.+...   ++..+|..                     .|. .++++++..+++.+|.++
T Consensus         4 ~~~~eeel~~~F~~fD~~~~G~I~~~---el~~~l~~---------------------lg~-~~~~~e~~~~~~~~D~d~   58 (75)
T d1jc2a_           4 KGKSEEELANCFRIFDKNADGFIDIE---ELGEILRA---------------------TGE-HVIEEDIEDLMKDSDKNN   58 (75)
T ss_dssp             CCCCHHHHHHHHHHHCCSTTSSEEHH---HHHHHHHH---------------------SSS-CCCHHHHHHHHHHHCSSS
T ss_pred             CCCcHHHHHHHHHHHcCCCcCeEcHH---HHHHHHHh---------------------cCC-CccHHHHHHHHHHhCCCC
Confidence            45678899999999999999555553   33333332                     121 589999999999999999


Q ss_pred             CCCeeHHhhhccce
Q psy4132         384 DSPIYLKTYSSGVK  397 (473)
Q Consensus       384 dg~Is~~EF~~~~~  397 (473)
                      +|.|+|+||+..++
T Consensus        59 dg~I~~~EF~~~m~   72 (75)
T d1jc2a_          59 DGRIDFDEFLKMME   72 (75)
T ss_dssp             CSEECHHHHHHHHH
T ss_pred             CCcEeHHHHHHHHH
Confidence            99999999987654

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.67  E-value=2.1e-08  Score=72.53  Aligned_cols=63  Identities=24%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ++.++.+|+.||+|++|.+...   ++..++.                    .. | ..++++++..+++.+|.|++|.|
T Consensus         2 eeel~~aF~~fD~d~~G~I~~~---el~~~l~--------------------~l-g-~~~~~~e~~~l~~~~D~d~~g~I   56 (65)
T d1fw4a_           2 EEEIREAFRVFDKDGNGYISAA---ELRHVMT--------------------NL-G-EKLTDEEVDEMIREADIDGDGQV   56 (65)
T ss_dssp             CHHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHHTTCTTCSSSE
T ss_pred             HHHHHHHHHHHcCCCCCcCCHH---HHHHHHH--------------------Hh-C-CCCCHHHHHHHHHHcCCCCCCcE
Confidence            5789999999999999655553   3333332                    22 2 14899999999999999999999


Q ss_pred             eHHhhhcc
Q psy4132         388 YLKTYSSG  395 (473)
Q Consensus       388 s~~EF~~~  395 (473)
                      +|+||...
T Consensus        57 ~~~eF~~~   64 (65)
T d1fw4a_          57 NYEEFVQM   64 (65)
T ss_dssp             EHHHHHHH
T ss_pred             eHHHHHHH
Confidence            99999753

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=98.66  E-value=2.8e-08  Score=75.21  Aligned_cols=68  Identities=26%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      +.+++.++.+|+.||.|++|.+..   .+|..+|..                     .| ..++++++..++..+|.|+|
T Consensus        11 ~~~ee~l~~~F~~~D~d~~G~I~~---~el~~~l~~---------------------~g-~~~~~~ev~~~~~~~D~d~d   65 (81)
T d1fi5a_          11 GKTEEELSDLFRMFDKNADGYIDL---EELKIMLQA---------------------TG-ETITEDDIEELMKDGDKNND   65 (81)
T ss_dssp             CCCHHHHHHHHHHHCSSCSSEECH---HHHHHHHHT---------------------SS-SCCCHHHHHHHHHHHCSSSS
T ss_pred             CCCHHHHHHHHHHHcCCCCCcccH---HHHHHHHHh---------------------cC-CCCCHHHHHHHHHHHCCCCC
Confidence            456788999999999999965555   344444432                     12 14889999999999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+|+||+..++
T Consensus        66 g~I~~~EF~~~m~   78 (81)
T d1fi5a_          66 GRIDYDEFLEFMK   78 (81)
T ss_dssp             SSEEHHHHHHHHS
T ss_pred             CcEeHHHHHHHHH
Confidence            9999999987665

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.62  E-value=1.6e-08  Score=75.57  Aligned_cols=64  Identities=19%  Similarity=0.355  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhhCCC--CCCCccHHHHhcch-hccC-----CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         238 DIRRLGKRFRKLDLD--NSGALSIDEFMSLP-ELQQ-----NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d--~~G~Is~~el~~l~-~~~~-----~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..++++.+|+.||.+  ++|+|+.+||+.++ .++.     ...++.++..+|.|++|.|+|+||+.+|...
T Consensus         3 s~eel~~~F~~fd~~~~~~G~I~~~El~~~l~~lg~~~~~~~~ei~~~~~~~D~d~dG~I~f~EF~~~m~~~   74 (76)
T d1qx2a_           3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHhCCcCCCCHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHH
Confidence            356799999999654  57999999999953 3322     2248999999999999999999999998764

>d1u5tb2 a.4.5.54 (B:490-564) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=3.4e-08  Score=68.90  Aligned_cols=64  Identities=20%  Similarity=0.307  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHhhC-------CcHHHHHHHHHHHHHcCCccccCCcccccccccccCc
Q psy4132         407 ASFVEKTYEIVSQNVFVTVEQFSRLAS-------VSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKFLL  470 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~~ls~~e~a~~~~-------~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n~~~~  470 (473)
                      +.+...+++++...++....++.+.++       |++++..|.|+.|...|-|..|++++|+.||.|..|.
T Consensus         4 d~ik~ki~~~i~~~pG~DlLqlT~~ln~~~~~nnW~iGvi~EVlqncv~eG~lliDeQiSGi~YY~N~~W~   74 (75)
T d1u5tb2           4 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSYWP   74 (75)
T ss_dssp             HHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSCEEEEECCSSC
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHcccCCcccchHHHHHHHHHHHHhccceeeehhhcceeeeeecccC
Confidence            356678899999999999999999995       9999999999999999999999999999999999885

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=98.59  E-value=1.5e-08  Score=74.07  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.++.+|+.||.|++|.++.   .+|..+|...                     |...+|++++..+++.+|.|+||.|+
T Consensus         2 eel~~~F~~~D~d~~G~I~~---~el~~~l~~~---------------------g~~~~s~~e~~~~~~~~D~d~dG~i~   57 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDF---DEFKFIMQKV---------------------GEEPLTDAEVEEAMKEADEDGNGVID   57 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECH---HHHHHHSSTT---------------------TTCCCCHHHHHHHHHHHCSSGGGSEE
T ss_pred             HHHHHHHHHHcCCCcCeEcH---HHHHHHHHHh---------------------CCCCCCHHHHHHHHHHhCCCCCCcEe
Confidence            56889999999999865555   4444444322                     21247999999999999999999999


Q ss_pred             HHhhhccc
Q psy4132         389 LKTYSSGV  396 (473)
Q Consensus       389 ~~EF~~~~  396 (473)
                      ++||+..+
T Consensus        58 ~~EF~~~m   65 (68)
T d1c7va_          58 IPEFMDLI   65 (68)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=98.58  E-value=4e-08  Score=75.43  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=44.1

Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|..||.|++|.+..   ++|..+|+.                    . |. .+|++++.++++.+|.|++|.|+|
T Consensus        24 ~l~~~F~~~D~d~~G~I~~---~el~~~l~~--------------------l-g~-~~s~~e~~~l~~~~D~d~~g~I~~   78 (87)
T d1s6ja_          24 GLKELFKMIDTDNSGTITF---DELKDGLKR--------------------V-GS-ELMESEIKDLMDAADIDKSGTIDY   78 (87)
T ss_dssp             TTTTHHHHHCTTCSSCEEH---HHHHHHHHT--------------------T-TS-SCCHHHHHHHHHHHCTTCSSEECH
T ss_pred             HHHHHHHHHcCCCCCcCcH---HHHHHHHHH--------------------c-CC-CCCHHHHHHHHHHcCCCCCCeEeH
Confidence            4667777777777744444   233333322                    1 21 488999999999999999999999


Q ss_pred             Hhhhccc
Q psy4132         390 KTYSSGV  396 (473)
Q Consensus       390 ~EF~~~~  396 (473)
                      +||+.++
T Consensus        79 ~EFl~am   85 (87)
T d1s6ja_          79 GEFIAAT   85 (87)
T ss_dssp             HHHTTCC
T ss_pred             HHHHHHH
Confidence            9998754

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.57  E-value=4.1e-08  Score=69.95  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=47.0

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.++.+|+.||++++|.++..   ++..+|.                    .. | ..+++.++..+++.+|.|++|.|+
T Consensus         1 Eel~~aF~~fD~~~~G~I~~~---el~~~l~--------------------~~-g-~~~~~~ei~~l~~~~D~d~dg~I~   55 (61)
T d2fcea1           1 EDFVKAFQVFDKESTGKVSVG---DLRYMLT--------------------GL-G-EKLTDAEVDELLKGVEVDSNGEID   55 (61)
T ss_dssp             HHHHHHHHHHCTTCCSCEEHH---HHHHHHH--------------------HT-T-CCCCHHHHHHHHTTCCCCTTSEEC
T ss_pred             ChHHHHHHHHCCCCCCeEeHH---HHHHHHH--------------------Hc-C-CCCCHHHHHHHHHHcCCCCCCcEe
Confidence            467899999999999655553   3333333                    22 2 148999999999999999999999


Q ss_pred             HHhhhc
Q psy4132         389 LKTYSS  394 (473)
Q Consensus       389 ~~EF~~  394 (473)
                      ++||+.
T Consensus        56 ~~eFl~   61 (61)
T d2fcea1          56 YKKFIE   61 (61)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999973

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.57  E-value=5.4e-08  Score=72.80  Aligned_cols=67  Identities=22%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             CCcHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         305 GDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       305 ~~~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      .++++.++.+|+.||.|++|.+...   ++..+|..                    ...  .++.+++..+++.+|.|++
T Consensus         5 ~d~~e~l~~~F~~~D~d~~G~I~~~---el~~~l~~--------------------~g~--~~~~~e~~~~~~~~D~d~~   59 (77)
T d1oqpa_           5 RDSREEILKAFRLFDDDNSGTITIK---DLRRVAKE--------------------LGE--NLTEEELQEMIAEADRNDD   59 (77)
T ss_dssp             SSHHHHHHHHHHHHCTTCSSSEEHH---HHHHHHHH--------------------HTC--CCCHHHHHHHHHHHCCSSS
T ss_pred             ccHHHHHHHHHHHHcCCCCCEechH---HHHHHHHH--------------------hCC--CCCHHHHHHHHHHhCCCCC
Confidence            4567889999999999999666653   33333332                    111  4889999999999999999


Q ss_pred             CCeeHHhhhccc
Q psy4132         385 SPIYLKTYSSGV  396 (473)
Q Consensus       385 g~Is~~EF~~~~  396 (473)
                      |.|+++||...+
T Consensus        60 G~I~~~EF~~~m   71 (77)
T d1oqpa_          60 NEIDEDEFIRIM   71 (77)
T ss_dssp             SEECHHHHHHHH
T ss_pred             CcEeHHHHHHHH
Confidence            999999998654

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=4.4e-08  Score=71.23  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             HHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCeeH
Q psy4132         310 KLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIYL  389 (473)
Q Consensus       310 ~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is~  389 (473)
                      .++.+|+.||.|++|.+...   |+...+.                    .. |. .++++++..+|+.+|.|+||.|++
T Consensus         2 ~~r~~F~~~D~d~~G~I~~~---El~~~l~--------------------~l-g~-~~~~~~i~~~~~~~D~d~dg~I~~   56 (67)
T d1tiza_           2 SAKRVFEKFDKNKDGKLSLD---EFREVAL--------------------AF-SP-YFTQEDIVKFFEEIDVDGNGELNA   56 (67)
T ss_dssp             THHHHHHHHCTTSSSCEEHH---HHHHHHH--------------------HT-CT-TSCHHHHHHHHHHHCCSSSSEECH
T ss_pred             hHHHHHHHHCCCCcCcCcHH---HHHHHHH--------------------Hh-cc-ccchHHHHHHHHHhCCCCCCeEeH
Confidence            36889999999999655553   3333332                    22 21 489999999999999999999999


Q ss_pred             Hhhhccce
Q psy4132         390 KTYSSGVK  397 (473)
Q Consensus       390 ~EF~~~~~  397 (473)
                      +||...+.
T Consensus        57 ~EF~~~m~   64 (67)
T d1tiza_          57 DEFTSCIE   64 (67)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=98.54  E-value=4.5e-08  Score=75.89  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHhhCCCCCCCccHHHHhcchhc---------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDLDNSGALSIDEFMSLPEL---------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~---------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++.+..+|+.+|.+ +|+|+.+||+.++..         .....+++++..+|.|+||.|+|+||+.++..+
T Consensus         5 E~~ie~l~~~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l   78 (92)
T d1a4pa_           5 EHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   78 (92)
T ss_dssp             HHHHHHHHHHHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Confidence            45678899999999987 899999999996321         134468999999999999999999999998655

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.4e-08  Score=76.50  Aligned_cols=67  Identities=16%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+.+.+..+|+.+|+|++|+|+.+|++.++. .+ ....++.+++.+|.|++|.|+++||+.+|+..
T Consensus         5 t~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~am~Li   73 (95)
T d1c07a_           5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLI   73 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence            356677899999999999999999999999643 23 23458999999999999999999999887543

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=98.49  E-value=5.1e-08  Score=75.80  Aligned_cols=66  Identities=26%  Similarity=0.395  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHhh-CCCCC-CCccHHHHhcchhc---------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKL-DLDNS-GALSIDEFMSLPEL---------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~-G~Is~~el~~l~~~---------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++.+.++|..+ |+|++ |+|+.+||+.++..         .....++.+++.+|.|+||.|+|+||+.+|..+
T Consensus         5 E~~i~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~Idf~EF~~lm~~l   81 (93)
T d1zfsa1           5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (93)
T ss_dssp             HHHHHHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTTTCCSEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            45578899999988 88875 99999999996321         123458899999999999999999999998765

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=98.49  E-value=9.9e-08  Score=74.79  Aligned_cols=66  Identities=17%  Similarity=0.309  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHhh-CCCCC-CCccHHHHhcchh-cc-----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKL-DLDNS-GALSIDEFMSLPE-LQ-----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~-G~Is~~el~~l~~-~~-----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++.+..+|+.| |.+++ |+|+..||+.++. .+     ....++.++..+|.|+||.|+|+||+.++..+
T Consensus        10 E~~i~~l~~vF~~y~d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~d~DG~IdF~EF~~l~~~l   83 (98)
T d1yuta1          10 EESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL   83 (98)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            45577899999988 77774 9999999999642 21     22348999999999999999999999999765

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=98.49  E-value=8e-08  Score=72.60  Aligned_cols=63  Identities=19%  Similarity=0.292  Sum_probs=48.9

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      ..++.+|+.||.|++|.++.   .|+...|.                    .. |  ..+++++.++++.+|.|++|.|+
T Consensus         6 ~e~~~~F~~~D~d~~G~I~~---~El~~~l~--------------------~l-g--~~~~~ei~~~~~~~D~d~~G~I~   59 (81)
T d2opoa1           6 ADRERIFKRFDTNGDGKISS---SELGDALK--------------------TL-G--SVTPDEVRRMMAEIDTDGDGFIS   59 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEEEH---HHHHHHHH--------------------TT-T--TCCHHHHHHHHHHHCTTCSSEEC
T ss_pred             HHHHHHHHHHCCCCCCCCcH---HHHHHHHH--------------------Hh-h--cCCHHHHHHHHHHhCCCCCCeEe
Confidence            46788999999999965555   33333333                    22 2  37899999999999999999999


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      ++||+..++
T Consensus        60 ~~EF~~~~~   68 (81)
T d2opoa1          60 FDEFTDFAR   68 (81)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999997654

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.1e-07  Score=73.63  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+...++.+|+.+|.+++|+|+.+|++.++ ..+. ...+..+++.+|.|++|.|+|+||+.+++..
T Consensus         4 s~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~a~~li   72 (92)
T d1fi6a_           4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV   72 (92)
T ss_dssp             CHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHccCCHHHHHHHHHHhCCCCCCeecHHHHHHHHHHH
Confidence            45667789999999999999999999999963 3332 3457999999999999999999999777544

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.46  E-value=3.3e-08  Score=74.18  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhCC--CCCCCccHHHHhcch-hcc-----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         237 VDIRRLGKRFRKLDL--DNSGALSIDEFMSLP-ELQ-----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~--d~~G~Is~~el~~l~-~~~-----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.++.+|+.||.  +++|+|+..||+.++ ...     ....++.++..+|.|+||.|+|+||+.+|..+
T Consensus         4 ~~~~~l~~~F~~y~~~d~~~g~is~~Elk~ll~~~~~~~~~~~~~v~~~~~~~D~d~dG~Idf~EF~~l~~~l   76 (78)
T d1cb1a_           4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             CCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCCCCCCEECHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            457889999999974  456999999999963 221     12348899999999999999999999998765

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=9.7e-08  Score=72.46  Aligned_cols=62  Identities=13%  Similarity=0.325  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHhcch-hcc---CCHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy4132         237 VDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQ---QNPLVQRVIDIFDEDRNGEVDFKEFIQGV  298 (473)
Q Consensus       237 ~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~---~~~~~~~l~~~~D~d~dG~I~~~EF~~~l  298 (473)
                      .....+.++|+.+|.+++|+|+.+||+.++ ..+   ....++.++..+|.+++|.|+|.||+..+
T Consensus        17 ~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          17 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            456789999999999999999999999963 222   23468999999999999999999999865

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.45  E-value=2e-07  Score=70.36  Aligned_cols=63  Identities=21%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.++.+|+.||.|++|.+...   ++..+|+                    .. |. .+|+.++.+++..+|.|++|.|+
T Consensus        14 ~el~~~F~~~D~d~~G~I~~~---el~~~l~--------------------~~-g~-~~s~~e~~~~~~~~D~d~~g~I~   68 (81)
T d1avsa_          14 AEFKAAFDMFDADGGGDISTK---ELGTVMR--------------------ML-GQ-NPTKEELDAIIEEVDEDGSGTID   68 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------HT-TC-CCCHHHHHHHHHHHCTTCCSSEE
T ss_pred             HHHHHHHHHHcCCCCCeEchh---HHHHHHH--------------------Hc-CC-CCCHHHHHHHHHHhCCCCCCeEe
Confidence            457889999999999655553   3333333                    22 22 48999999999999999999999


Q ss_pred             HHhhhccc
Q psy4132         389 LKTYSSGV  396 (473)
Q Consensus       389 ~~EF~~~~  396 (473)
                      ++||+..+
T Consensus        69 ~~eF~~~m   76 (81)
T d1avsa_          69 FEEFLVMM   76 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998644

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=98.45  E-value=8.6e-08  Score=74.26  Aligned_cols=67  Identities=15%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             chHHHHHHHHHHHhh-CCCCCC-CccHHHHhcchhc-----c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKL-DLDNSG-ALSIDEFMSLPEL-----Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~-D~d~~G-~Is~~el~~l~~~-----~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..+..+|+.+ |++++| +|+..||+.++..     .    ....++++++.+|.|+||.|+|+||+.+|..+
T Consensus         4 lE~~i~~i~~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l   81 (93)
T d1ksoa_           4 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            455678899999987 999999 5999999996321     1    23358999999999999999999999998765

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=98.42  E-value=2e-07  Score=68.83  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      ..++.+|+.||.|++|.+...                       ++..++... |. .+|++++..+++.+|.+++|.|+
T Consensus         8 ~el~~~F~~~D~d~~G~I~~~-----------------------el~~~l~~~-g~-~~s~~~~~~~~~~~D~d~~g~I~   62 (73)
T d2pq3a1           8 AEFKEAFSLFDKDGDGTITTK-----------------------ELGTVMRSL-GQ-NPTEAELQDMINEVDADGNGTID   62 (73)
T ss_dssp             HHHHHHHHHTCTTSSSEEEGG-----------------------GHHHHHHHT-TC-CCCHHHHHHHHHHHCTTCSSEEE
T ss_pred             HHHHHHHHHHcCCCCceEeHH-----------------------HHHHHHHHh-CC-CCCHHHHHHHHHHhCCCCCCeEe
Confidence            467889999999999555553                       333333332 21 48999999999999999999999


Q ss_pred             HHhhhcc
Q psy4132         389 LKTYSSG  395 (473)
Q Consensus       389 ~~EF~~~  395 (473)
                      ++||+..
T Consensus        63 f~eF~~~   69 (73)
T d2pq3a1          63 FPEFLTM   69 (73)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999764

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=98.41  E-value=1.7e-07  Score=71.98  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHhh-CCCCCC-CccHHHHhcchhc-------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKL-DLDNSG-ALSIDEFMSLPEL-------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~-D~d~~G-~Is~~el~~l~~~-------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..+..+|..+ |++++| +|+..||+.+...       ..+..++.+++.+|.|+||.|+|+||+.++..+
T Consensus         4 lE~ai~~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~l   79 (89)
T d1k8ua_           4 LDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence            455678899999888 999999 6999999996321       234568999999999999999999999998765

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=98.39  E-value=2.2e-07  Score=71.99  Aligned_cols=66  Identities=21%  Similarity=0.296  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHhh-CCCCC-CCccHHHHhcchhc---------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKL-DLDNS-GALSIDEFMSLPEL---------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~-G~Is~~el~~l~~~---------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++.+..+|..+ |.|++ |+|+.+||+.++..         .....++++++.+|.|+||.|+|+||+.+|..+
T Consensus         5 E~~i~~l~~~F~~ya~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l   81 (93)
T d3c1va1           5 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   81 (93)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence            45677899999998 67765 47999999996422         123358999999999999999999999998765

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=98.38  E-value=2.2e-07  Score=70.30  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=57.4

Q ss_pred             HHHhHHHHHHHHHHHHhhhh--------hhhHHHHHHHHhhhhhhhhhhhhcccccccccCCCCCceeHHHHHHHHc
Q psy4132         159 VEKQKETSSNINNAFKDLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG  227 (473)
Q Consensus       159 ~~~~~~~~~~l~eaF~~lD~--------~~e~~~~l~~lg~~~~~~~~~~~~~~~~~~~D~d~dG~I~f~EF~~~~~  227 (473)
                      ++..+++..+++++|..||+        ..++...|+++|.+++..  +++.++..  +|.|++|.|+|+||+.+|+
T Consensus         7 ~~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~--el~~~i~~--~D~d~~G~I~f~eFl~im~   79 (82)
T d1wrka1           7 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPE--ELQEMIDE--VDEDGSGTVDFDEFLVMMV   79 (82)
T ss_dssp             HHCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHH--HHHHHHHT--TCTTCCSSBCHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHH--HHHHHHHH--hCCCCCCeEeHHHHHHHHH
Confidence            35557777899999999987        788999999999999988  88888875  8999999999999999987

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=98.36  E-value=2.7e-07  Score=70.47  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHhh-CCCCCCC-ccHHHHhcchh--c---cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKL-DLDNSGA-LSIDEFMSLPE--L---QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~G~-Is~~el~~l~~--~---~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..++.+..+|+.+ |++++|. ++.+||+.+..  +   ..+..++.+++.+|.|+||.|+|+||+.++..+
T Consensus         6 E~ai~~ii~~F~kya~~dG~~~~l~~~Elk~ll~~e~~~~~~~~~v~~i~~~~D~n~DG~IdF~EF~~l~~~l   78 (87)
T d1xk4a1           6 EKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKM   78 (87)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCccCHHHHHHHHHHhcCCccchHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            45667889999888 8999986 58999998643  2   223458999999999999999999999999765

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=3.3e-07  Score=68.35  Aligned_cols=63  Identities=21%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.++.+|+.||.|++|.+...   ++..+|..                     .|. .++++++.+++..+|.+++|.|+
T Consensus        10 ~el~~~F~~~D~d~~G~I~~~---el~~~l~~---------------------~g~-~~t~~e~~~~~~~~D~~~~g~I~   64 (77)
T d1f54a_          10 AEFKEAFALFDKDNNGSISSS---ELATVMRS---------------------LGL-SPSEAEVNDLMNEIDVDGNHQIE   64 (77)
T ss_dssp             HHHHHHHHHTCTTCSSEEEHH---HHHHHHHH---------------------HTC-CCCHHHHHHHHHTTCCSSCCEEE
T ss_pred             HHHHHHHHHHcCCCCCeEChH---HHHHHHHH---------------------hCC-CCCHHHHHHHHHHhCCCCCCeEe
Confidence            468889999999999666653   33333332                     122 48999999999999999999999


Q ss_pred             HHhhhccc
Q psy4132         389 LKTYSSGV  396 (473)
Q Consensus       389 ~~EF~~~~  396 (473)
                      ++||+..+
T Consensus        65 ~~eF~~~m   72 (77)
T d1f54a_          65 FSEFLALM   72 (77)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998654

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.2e-07  Score=74.47  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             HHHHHHhhCCCCCCCccHHHHhcchh-cc---------------CC----HHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         242 LGKRFRKLDLDNSGALSIDEFMSLPE-LQ---------------QN----PLVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       242 l~~~F~~~D~d~~G~Is~~el~~l~~-~~---------------~~----~~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      ++.+|+.+|.|++|+|+.+||..+.. ..               ..    ..++.+|..+|.|+||.|+|+||+.++..
T Consensus        18 ~r~~F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~~~   96 (99)
T d1snla_          18 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR   96 (99)
T ss_dssp             HHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHhc
Confidence            57789999999999999999998532 10               00    12678999999999999999999988754

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.3e-08  Score=83.37  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=73.7

Q ss_pred             ccCCCCCceeHHHHHHHHccccccccchHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCHHHHHHHHHhcCCCCC
Q psy4132         209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDRNG  287 (473)
Q Consensus       209 ~D~d~dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~~~~~l~~~~D~d~dG  287 (473)
                      +|.|++|+|+..|+..++...  ........+.+...|...|.+++|.|+.+||..+. .+...+.+..+|..+|.|++|
T Consensus        16 ~d~n~dG~Is~~el~k~l~~~--~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~~r~ei~~~F~~~d~d~~~   93 (170)
T d2zkmx1          16 MQLNSEGKIPVKNFFQMFPAD--RKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCPRPEIDEIFTSYHAKAKP   93 (170)
T ss_dssp             HSCCTTSCEEHHHHHHHSCSC--HHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSCCHHHHTTCC--------
T ss_pred             cccCCCCCCcHHHHHHHHHHh--hhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccCCHHHHHHHHHHHcCCCCC
Confidence            688999999999999988621  11222344566667888999999999999999863 455667888999999999999


Q ss_pred             cccHHHHHHHHhhcccCC---------CcHHHHHHHhHHhcCCCC
Q psy4132         288 EVDFKEFIQGVSQFSVKG---------DRESKLKFAFRIYDIDND  323 (473)
Q Consensus       288 ~I~~~EF~~~l~~~~~~~---------~~~e~l~~~F~~~D~d~d  323 (473)
                      .|+.+||..++.......         ...+.++.++..|+.+.+
T Consensus        94 ~it~~el~~fL~~~Q~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~  138 (170)
T d2zkmx1          94 YMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGI  138 (170)
T ss_dssp             CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--
T ss_pred             cccHHHHHHHHHHHhcchhhhhhccccCCHHHHHHHHHHHccccc
Confidence            999999999997664432         133456666777765543

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=98.30  E-value=2.9e-07  Score=72.33  Aligned_cols=66  Identities=14%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchhcc-----------CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ-----------QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~~~-----------~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      .+..+..+..+|..+| +++|.|+..||+.++...           ....++.+++.+|.|+||.|+|+||+.+|..+
T Consensus         5 ~E~~i~~l~~~F~~y~-~~dG~i~~~El~~ll~~~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l   81 (100)
T d1psra_           5 AERSIIGMIDMFHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI   81 (100)
T ss_dssp             HHHHHHHHHHHHHHTC-CTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHccccccccccCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            3456777888888887 678999999999963321           22347899999999999999999999998765

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.4e-07  Score=70.07  Aligned_cols=66  Identities=23%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcch-hccCCH-HHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~-~~~~~~-~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+...+.++|+.+| +++|+|+..|++.++ ..+... .++.++..+|.|++|.|+++||+.+++..
T Consensus         5 s~ee~~~y~~~F~~~D-~~~G~i~~~el~~~l~~~gl~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~~Li   72 (95)
T d2jxca1           5 KPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTC-CBTTEEEHHHHHHHHTTSSCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHH
Confidence            4567788999999999 899999999999964 333333 58999999999999999999998877644

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.6e-07  Score=67.66  Aligned_cols=63  Identities=11%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             HHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         308 ESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       308 ~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      ...+..+|+.||.+++|.+...                       ++...+.+...  .++++++..++..+|.+++|.|
T Consensus        19 ~~~l~~~F~~~D~~~~G~i~~~-----------------------ef~~~l~~~~~--~l~~~e~~~l~~~~d~~~~g~I   73 (83)
T d1wlza1          19 YHAITQEFENFDTMKTNTISRE-----------------------EFRAICNRRVQ--ILTDEQFDRLWNEMPVNAKGRL   73 (83)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCHH-----------------------HHHHHHHHHTC--CCCHHHHHHHHTTSCBCTTSCB
T ss_pred             HHHHHHHHHHHCCCCCceEChh-----------------------HHHHHHHHhCC--CCChhHHHHHhhccccCCCCcE
Confidence            4568889999999999555553                       33333333322  4899999999999999999999


Q ss_pred             eHHhhhcc
Q psy4132         388 YLKTYSSG  395 (473)
Q Consensus       388 s~~EF~~~  395 (473)
                      +|.||+..
T Consensus        74 ~y~eFl~~   81 (83)
T d1wlza1          74 KYPDFLSR   81 (83)
T ss_dssp             CHHHHHHH
T ss_pred             eHHHHHHH
Confidence            99999864

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=4.4e-07  Score=67.49  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             cHHHHHHHhHHhcCCC--CchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCC
Q psy4132         307 RESKLKFAFRIYDIDN--DDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPD  384 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~--dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~d  384 (473)
                      .++.++.+|+.||.+.  +|.++.   ++|..+|.......                    ..+..++.++++.+|.|+|
T Consensus         3 s~eel~~~F~~fd~~~~~~G~I~~---~El~~~l~~lg~~~--------------------~~~~~ei~~~~~~~D~d~d   59 (76)
T d1qx2a_           3 SPEEIKGAFEVFAAKEGDPNQISK---EELKLVMQTLGPSL--------------------LKGMSTLDEMIEEVDKNGD   59 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEH---HHHHHHHHHHGGGS--------------------CTTSCSHHHHHHHHCTTCS
T ss_pred             CHHHHHHHHHHHcccCCCCCEECH---HHHHHHHHHhCCcC--------------------CCCHHHHHHHHHHhhcCCC
Confidence            4678999999997653  344444   34444443321100                    1233468899999999999


Q ss_pred             CCeeHHhhhccce
Q psy4132         385 SPIYLKTYSSGVK  397 (473)
Q Consensus       385 g~Is~~EF~~~~~  397 (473)
                      |.|+|+||...+.
T Consensus        60 G~I~f~EF~~~m~   72 (76)
T d1qx2a_          60 GEVSFEEFLVMMK   72 (76)
T ss_dssp             SEECHHHHHHHHH
T ss_pred             CcCcHHHHHHHHH
Confidence            9999999987553

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.3e-07  Score=72.10  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHhhCCCCCCCccHHHHhcchh-cc-CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         235 MVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQ-QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       235 ~~~~~~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~-~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ...+.+.+..+|+.+|++++|+|+.+|++.++. .+ ....+..+++.+|.|++|.|+++||+.+|+..
T Consensus        17 t~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~L~~~~L~~Iw~l~D~d~dG~l~~~EF~~am~Li   85 (110)
T d1iq3a_          17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI   85 (110)
T ss_dssp             SSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHhhccchHHHHHHHHHhccCCCCeECHHHHHHHHHHH
Confidence            355678899999999999999999999999542 22 34468999999999999999999999877644

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.4e-07  Score=70.22  Aligned_cols=28  Identities=11%  Similarity=0.088  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         370 EDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       370 ~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      ..+..+|+.+|.|+||.||++||+.+++
T Consensus        68 ~~v~~~~~~~D~d~DG~Is~~EF~~~~~   95 (99)
T d1snla_          68 RMREHVMKNVDTNQDRLVTLEEFLASTQ   95 (99)
T ss_dssp             HHHHHHHHHTCSSCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence            3467899999999999999999998764

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=98.20  E-value=1.4e-06  Score=67.30  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             HHHHHHhHHh-cCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIY-DIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~-D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      +.+..+|..| |.|++|+.+..  +|+..+|.......                .+ ...+++++.++++.+|.|+||.|
T Consensus         9 ~~l~~~F~~ya~~dg~~~~L~~--~Elk~~l~~~~~~~----------------~~-~~~~~~~~~~i~~~~D~n~DG~I   69 (93)
T d3c1va1           9 DVMVSTFHKYSGKEGDKFKLNK--SELKELLTRELPSF----------------LG-KRTDEAAFQKLMSNLDSNRDNEV   69 (93)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECH--HHHHHHHHHHCHHH----------------HT-TCCSHHHHHHHHHHHCTTCSSSE
T ss_pred             HHHHHHHHHHccCCCCCCeeCH--HHHHHHHHHhchhc----------------cc-cCCCHHHHHHHHHHHcCCCCCCC
Confidence            4577888888 66666653333  45555544321100                01 24789999999999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||...+.
T Consensus        70 ~F~EF~~lm~   79 (93)
T d3c1va1          70 DFQEYCVFLS   79 (93)
T ss_dssp             EHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999987553

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=98.15  E-value=1.7e-06  Score=65.77  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHhh-CCCCCC-CccHHHHhcchhc-----c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKL-DLDNSG-ALSIDEFMSLPEL-----Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~-D~d~~G-~Is~~el~~l~~~-----~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+..+|..+ ++++++ +|+..||+.++..     .    ....++.+++.+|.|+||.|+|+||+.++..+
T Consensus         4 E~ai~~li~vF~kya~~~g~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~idF~EF~~li~~l   80 (87)
T d1e8aa_           4 EEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIA   80 (87)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCeEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            45677899999988 556554 7999999996321     1    12458999999999999999999999998765

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=98.15  E-value=1.3e-06  Score=67.59  Aligned_cols=68  Identities=18%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             HHHHHHhHHh-cCCCC-chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIY-DIDND-DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~-D~d~d-g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.+..+|..| |+|++ |.++.   .||..+|.......                 .....+++++.++++.+|.|+||.
T Consensus         9 ~~l~~~F~~y~d~dg~~G~is~---~El~~~L~~~~~~~-----------------~~~~~~~~~~~~~~~~~D~d~dG~   68 (93)
T d1zfsa1           9 ETLINVFHAHSGKEGDKYKLSK---KELKDLLQTELSSF-----------------LDVQKDADAVDKIMKELDENGDGE   68 (93)
T ss_dssp             HHHHHHHHHHGGGSSCCSSEEH---HHHHHHHHHHSTTT-----------------SCCSSCHHHHHHHHHHHTTTCCSE
T ss_pred             HHHHHHHHHHcccCCCCCEecH---HHHHHHHHHhcccc-----------------cccCCCHHHHHHHHHHHcCCCCCC
Confidence            4677788887 77765 34444   44444444322110                 012478899999999999999999


Q ss_pred             eeHHhhhccc
Q psy4132         387 IYLKTYSSGV  396 (473)
Q Consensus       387 Is~~EF~~~~  396 (473)
                      |+++||...+
T Consensus        69 Idf~EF~~lm   78 (93)
T d1zfsa1          69 VDFQEFVVLV   78 (93)
T ss_dssp             ECSHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9999998655

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8e-07  Score=69.08  Aligned_cols=63  Identities=14%  Similarity=0.050  Sum_probs=46.7

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +..+.+|+.+|+|++|.+..+   ++..++.                    +.    .++.+++.++++.+|.|+||.|+
T Consensus        10 ~~~~~~F~~~D~d~~G~is~~---e~~~~l~--------------------~~----~l~~~~l~~i~~~~D~d~dG~l~   62 (95)
T d1c07a_          10 AKYDEIFLKTDKDMDGFVSGL---EVREIFL--------------------KT----GLPSTLLAHIWSLCDTKDCGKLS   62 (95)
T ss_dssp             HHHHHHHHHHCTTCSSEECHH---HHHHHHH--------------------TT----TCCHHHHHHHHHHHCTTCSSSEE
T ss_pred             HHHHHHHHHHCCCCCCCCcHH---HHHHHHH--------------------hc----CCCHHHHHHHHHHhCCCCCCeEc
Confidence            456788888888888555442   3333332                    21    27888999999999999999999


Q ss_pred             HHhhhcccee
Q psy4132         389 LKTYSSGVKV  398 (473)
Q Consensus       389 ~~EF~~~~~v  398 (473)
                      ++||..++..
T Consensus        63 ~~EF~~am~L   72 (95)
T d1c07a_          63 KDQFALAFHL   72 (95)
T ss_dssp             TTTHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877653

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.2e-06  Score=68.53  Aligned_cols=62  Identities=16%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHHhcchh-ccC-CHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         240 RRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQ-NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       240 ~~l~~~F~~~D~d~~G~Is~~el~~l~~-~~~-~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+.++|+.+|.+++|+|+.+|++.++. .+. ...+..+++.+|.|++|.|+++||+.+|+..
T Consensus        11 ~~y~~~F~~~D~d~~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li   74 (99)
T d1qjta_          11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV   74 (99)
T ss_dssp             THHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH
Confidence            3567899999999999999999999643 232 3458899999999999999999999888644

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.3e-06  Score=69.82  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee-----cCccccccchhhhhHHHhhhhcccccCcccEE
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ-----KDITLCLALSYIQNAVEEAKSMFNLTAGRKII   82 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~-----~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~   82 (473)
                      +|-|.|||.++....+|..+. .. .+--.|+|+||+||||+.     +...+.+||..|.+++.....-.....+-.|.
T Consensus         2 ~~~llpGE~i~~~~~~V~~~~-p~-~~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~   79 (125)
T d1zsqa1           2 EPPLLPGENIKDMAKDVTYIC-PF-TGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLE   79 (125)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEE-TT-TEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEE
T ss_pred             CCCcCCCcEEEEeeccEEEEc-cC-CCccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEE
Confidence            477999999999999996653 21 233589999999999998     22347999999999975543221011233466


Q ss_pred             EEeecCCCCCCCCCCCCCCCCeEEEeccCC--CchHHHHHHHHH
Q psy4132          83 LYLSKAVPGKNLGPSATSAYDYVKLSFREG--IQNEFLDALKST  124 (473)
Q Consensus        83 ~~l~~~~~~~~~~p~~~~~~~~iklsFr~g--g~~~F~~~l~~~  124 (473)
                      +..+              ....++++|...  ....++.+|...
T Consensus        80 I~CK--------------Dfr~~~f~f~~e~~~~~~v~~~L~~~  109 (125)
T d1zsqa1          80 TVCK--------------DIRNLRFAHKPEGRTRRSIFENLMKY  109 (125)
T ss_dssp             EEET--------------TTEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             EEec--------------cCeEEEEEEcCCccHHHHHHHHHHHh
Confidence            6665              457899999643  334455554443

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=98.06  E-value=2.5e-06  Score=65.71  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             HHHHHHhHHh-cCCCCch-hhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIY-DIDNDDD-YYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~-D~d~dg~-~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.+..+|..| |+|++|. ++.   .|+.++|...+...                .+ ...++.++.++++.+|.|+||.
T Consensus         9 ~~i~~vF~kya~~dGd~~~ls~---~Elk~ll~~~~~~~----------------~~-~~~~~~~~~~~~~~lD~n~Dg~   68 (93)
T d1ksoa_           9 AAIVCTFQEYAGRCGDKYKLCQ---AELKELLQKELATW----------------TP-TEFRECDYNKFMSVLDTNKDCE   68 (93)
T ss_dssp             HHHHHHHHHHHTSSSCTTCEEH---HHHHHHHHHHTTTC----------------CC-CTTCHHHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHcCcCCCCCeECH---HHHHHHHHHhhhcc----------------cc-cCCCHHHHHHHHHHHcCCCCCC
Confidence            3466778887 8888874 555   44555554332211                01 1367889999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||...+.
T Consensus        69 IdF~EF~~l~~   79 (93)
T d1ksoa_          69 VDFVEYVRSLA   79 (93)
T ss_dssp             ECHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999986554

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=98.05  E-value=1.3e-06  Score=67.27  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=45.9

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +.+..+|..||.| +|.++..   |+..+|.......            +    + ...++..+.++++.+|.|+||.|+
T Consensus         9 e~l~~~F~~yd~d-dG~is~~---El~~~l~~~~~~~------------~----~-~~~~~~~v~~~~~~~D~n~DG~I~   67 (92)
T d1a4pa_           9 ETMMFTFHKFAGD-KGYLTKE---DLRVLMEKEFPGF------------L----E-NQKDPLAVDKIMKDLDQCRDGKVG   67 (92)
T ss_dssp             HHHHHHHHHHHGG-GCSBCHH---HHHHHHHHHCHHH------------H----H-HSCCTTHHHHHHHHHCTTSSSCBC
T ss_pred             HHHHHHHHHHcCC-CCEEcHH---HHHHHHHHhcccc------------c----c-ccCCHHHHHHHHHHHhCCCCCCCc
Confidence            5678889999876 6666664   4444443221100            0    0 025677899999999999999999


Q ss_pred             HHhhhccce
Q psy4132         389 LKTYSSGVK  397 (473)
Q Consensus       389 ~~EF~~~~~  397 (473)
                      ++||...+.
T Consensus        68 F~EF~~li~   76 (92)
T d1a4pa_          68 FQSFFSLIA   76 (92)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999986553

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=98.04  E-value=2.5e-06  Score=66.51  Aligned_cols=65  Identities=18%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             HHHHHHhHHh-cCCCC-chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIY-DIDND-DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~-D~d~d-g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.+..+|..| |+|++ |.++.   .||..+|....                    +....+++++.++++.+|.|+||.
T Consensus        14 ~~l~~vF~~y~d~dg~~g~is~---~El~~~l~~~~--------------------~~~~~~~~~v~~l~~~~D~d~DG~   70 (98)
T d1yuta1          14 ETVVTTFFTFARQEGRKDSLSV---NEFKELVTQQL--------------------PHLLKDVGSLDEKMKSLDVNQDSE   70 (98)
T ss_dssp             HHHHHHHHHHHTTSSSSSCBCH---HHHHHHHHHHC--------------------TTTTCCSSCHHHHHHHHCTTCCSC
T ss_pred             HHHHHHHHHHcccCCCCCEEcH---HHHHHHHHHhc--------------------cccCCCHHHHHHHHHHhcCCCCCc
Confidence            4567778887 67765 34444   44444444321                    111245667899999999999999


Q ss_pred             eeHHhhhccc
Q psy4132         387 IYLKTYSSGV  396 (473)
Q Consensus       387 Is~~EF~~~~  396 (473)
                      |+|+||+..+
T Consensus        71 IdF~EF~~l~   80 (98)
T d1yuta1          71 LKFNEYWRLI   80 (98)
T ss_dssp             BCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999998655

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.8e-06  Score=66.61  Aligned_cols=63  Identities=13%  Similarity=0.038  Sum_probs=46.5

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      +..+.+|+.+|.|++|.+..                       .++...+.+. |   ++.+++.++++.+|.|+||.|+
T Consensus         9 ~~y~~~F~~~D~d~~G~i~~-----------------------~e~~~~l~~~-~---l~~~~l~~i~~~~D~d~dG~l~   61 (92)
T d1fi6a_           9 QYYVNQFKTIQPDLNGFIPG-----------------------SAAKEFFTKS-K---LPILELSHIWELSDFDKDGALT   61 (92)
T ss_dssp             HHHHHHHTTTCCSTTCEEEH-----------------------HHHHHHHHHH-S---SCHHHHHHHHHHHCTTCSSEEE
T ss_pred             HHHHHHHHHhCCCcccchhH-----------------------HHHHHHHHHc-c---CCHHHHHHHHHHhCCCCCCeec
Confidence            45667888888888855444                       3333333332 2   7888999999999999999999


Q ss_pred             HHhhhcccee
Q psy4132         389 LKTYSSGVKV  398 (473)
Q Consensus       389 ~~EF~~~~~v  398 (473)
                      ++||..+++.
T Consensus        62 ~~EF~~a~~l   71 (92)
T d1fi6a_          62 LDEFCAAFHL   71 (92)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876653

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.00  E-value=2.2e-06  Score=63.84  Aligned_cols=69  Identities=23%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             CcHHHHHHHhHHhcC-CCC-chhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCC
Q psy4132         306 DRESKLKFAFRIYDI-DND-DDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLP  383 (473)
Q Consensus       306 ~~~e~l~~~F~~~D~-d~d-g~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~  383 (473)
                      ...+.++.+|..||. |++ |.++.   .|+..+|...+.                    ....+++++.++++.+|.|+
T Consensus         4 ~~~~~l~~~F~~y~~~d~~~g~is~---~Elk~ll~~~~~--------------------~~~~~~~~v~~~~~~~D~d~   60 (78)
T d1cb1a_           4 KSPAELKSIFEKYAAKEGDPNQLSK---EELKQLIQAEFP--------------------SLLKGPRTLDDLFQELDKNG   60 (78)
T ss_dssp             CCHHHHHHHHHHHHTTSSSTTEECH---HHHHHHHHHHCS--------------------SCCSSCCCSSHHHHHTCCCS
T ss_pred             hhHHHHHHHHHHHccCCCCCCEECH---HHHHHHHHHHcC--------------------CCCCCHHHHHHHHHHHcCCC
Confidence            346789999999975 333 34444   344444433211                    11245566889999999999


Q ss_pred             CCCeeHHhhhccce
Q psy4132         384 DSPIYLKTYSSGVK  397 (473)
Q Consensus       384 dg~Is~~EF~~~~~  397 (473)
                      ||.|+|+||+..+.
T Consensus        61 dG~Idf~EF~~l~~   74 (78)
T d1cb1a_          61 DGEVSFEEFQVLVK   74 (78)
T ss_dssp             SSSEEHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHH
Confidence            99999999987653

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=97.99  E-value=1.1e-06  Score=67.05  Aligned_cols=66  Identities=12%  Similarity=0.051  Sum_probs=44.9

Q ss_pred             HHHHHHhHHh-cCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCe
Q psy4132         309 SKLKFAFRIY-DIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPI  387 (473)
Q Consensus       309 e~l~~~F~~~-D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~I  387 (473)
                      +.+..+|..| |+|++|.+...  .|+..+|...+.                     ..++++++.++++.+|.|+||.|
T Consensus        10 ~~ii~~F~kya~~dG~~~~l~~--~Elk~ll~~e~~---------------------~~~~~~~v~~i~~~~D~n~DG~I   66 (87)
T d1xk4a1          10 NSIIDVYHKYSLIKGNFHAVYR--DDLKKLLETESP---------------------QYIRKKGADVWFKELDINTDGAV   66 (87)
T ss_dssp             HHHHHHHHHHHTSSSCTTCBCH--HHHHHHHHHHSC---------------------HHHHTTCHHHHHHHHCTTCSSSB
T ss_pred             HHHHHHHHHHcccCCCCCccCH--HHHHHHHHHhcC---------------------CccchHHHHHHHHHhCCCCCCcC
Confidence            4566778887 88888765443  444444443211                     01334558899999999999999


Q ss_pred             eHHhhhccce
Q psy4132         388 YLKTYSSGVK  397 (473)
Q Consensus       388 s~~EF~~~~~  397 (473)
                      +|+||...+.
T Consensus        67 dF~EF~~l~~   76 (87)
T d1xk4a1          67 NFQEFLILVI   76 (87)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987554

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=97.92  E-value=4.1e-06  Score=63.91  Aligned_cols=67  Identities=19%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             HHHHHHhHHh-cCCCCch-hhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIY-DIDNDDD-YYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~-D~d~dg~-~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+..+|..| |+|+++. ++..|++++.......                     + ...+++++.++++.+|.|+||.
T Consensus         9 ~~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~---------------------~-~~~~~~~~~~~~~~lD~d~Dg~   66 (89)
T d1k8ua_           9 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTI---------------------G-SKLQDAEIARLMEDLDRNKDQE   66 (89)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCC---------------------G-GGTTSHHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHh---------------------h-ccCCHHHHHHHHHHhcCCCCCC
Confidence            3466778888 8888864 4554444444322110                     0 1257788999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||+..+.
T Consensus        67 IdF~EF~~l~~   77 (89)
T d1k8ua_          67 VNFQEYVTFLG   77 (89)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            99999986553

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=97.90  E-value=4e-06  Score=50.74  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhhCCCCCCCccHHHHhcch
Q psy4132         239 IRRLGKRFRKLDLDNSGALSIDEFMSLP  266 (473)
Q Consensus       239 ~~~l~~~F~~~D~d~~G~Is~~el~~l~  266 (473)
                      .++++++|+.||+|++|+|+..||+.++
T Consensus         2 eeel~eAF~~FDkDg~G~Is~~EL~~vm   29 (33)
T d2hf5a1           2 EEEIREAFRVFDKDGNGYISAAELRHVM   29 (33)
T ss_dssp             HHHHHHHHHHHSSSCCSCBCHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            4689999999999999999999999854

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=97.85  E-value=1.6e-05  Score=60.21  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             HHHHHHhHHh-cCCCCch-hhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         309 SKLKFAFRIY-DIDNDDD-YYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       309 e~l~~~F~~~-D~d~dg~-~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      +.+..+|..| +++++++ ++.   .||..+|+..+...                .+ ...+|+.+.++++.+|.|+||.
T Consensus         8 ~~li~vF~kya~~~g~~~~Lsk---~Elk~ll~~e~~~~----------------~~-~~~~~~~v~~~~~~lD~n~Dg~   67 (87)
T d1e8aa_           8 EGIVNIFHQYSVRKGHFDTLSK---GELKQLLTKELANT----------------IK-NIKDKAVIDEIFQGLDANQDEQ   67 (87)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECH---HHHHHHHHHHSTTT----------------ST-TTTSHHHHHHHHHHHCTTCSSC
T ss_pred             HHHHHHHHHHcccCCCCCeEcH---HHHHHHHHHHcccc----------------cc-CCCCHHHHHHHHHHHcCCCCCc
Confidence            4566778887 4555544 444   45555554432211                00 1367899999999999999999


Q ss_pred             eeHHhhhccce
Q psy4132         387 IYLKTYSSGVK  397 (473)
Q Consensus       387 Is~~EF~~~~~  397 (473)
                      |+|+||...+.
T Consensus        68 idF~EF~~li~   78 (87)
T d1e8aa_          68 VDFQEFISLVA   78 (87)
T ss_dssp             EEHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999986553

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=97.72  E-value=3.1e-05  Score=58.83  Aligned_cols=66  Identities=24%  Similarity=0.383  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchhc-----c---CC-HHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPEL-----Q---QN-PLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~~-----~---~~-~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+..+|..+. .+++ ++++..||+.+...     .   .+ ..++.+++.+|.|+||.|+|+||+.++..+
T Consensus         5 E~ai~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m~~LD~n~Dg~vdF~EF~~li~~l   81 (90)
T d3cr5x1           5 EKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMI   81 (90)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            455678889999884 5554 68999999996321     1   22 358999999999999999999999988665

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.6e-05  Score=61.96  Aligned_cols=64  Identities=11%  Similarity=0.027  Sum_probs=48.3

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      .....+|+.+|+|++|.+..+   ++..++                    .+ .   .++++++.++++.+|.|+||.|+
T Consensus        11 ~~y~~~F~~~D~d~~G~i~~~---e~~~~l--------------------~~-s---~L~~~~L~~i~~~~D~d~dG~L~   63 (99)
T d1qjta_          11 PVYEKYYRQVEAGNTGRVLAL---DAAAFL--------------------KK-S---GLPDLILGKIWDLADTDGKGVLS   63 (99)
T ss_dssp             THHHHHHHHHCCTTSSCCCSH---HHHHHH--------------------HT-S---SSCHHHHHHHHHHHCCSSSSSCC
T ss_pred             HHHHHHHHHHCCCCCCcccHH---HHHHHH--------------------HH-c---CCcHHHHHHHHHHHcCCCCCccC
Confidence            456688999999998555443   333333                    22 1   28899999999999999999999


Q ss_pred             HHhhhccceee
Q psy4132         389 LKTYSSGVKVL  399 (473)
Q Consensus       389 ~~EF~~~~~vl  399 (473)
                      ++||..+++.+
T Consensus        64 ~~EF~~am~Li   74 (99)
T d1qjta_          64 KQEFFVALRLV   74 (99)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877644

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=97.61  E-value=7.1e-05  Score=57.31  Aligned_cols=66  Identities=24%  Similarity=0.400  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHhhC-CCCC-CCccHHHHhcchhc---------cCCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLD-LDNS-GALSIDEFMSLPEL---------QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D-~d~~-G~Is~~el~~l~~~---------~~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+..+|..+. .+++ ++++..||+.++..         .....++++++.+|.|+||.|+|.||+.++..+
T Consensus         5 E~ai~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~li~~l   81 (95)
T d1qlsa_           5 ERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGL   81 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            445677888998874 4554 68999999996321         234469999999999999999999999988765

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.7e-05  Score=60.08  Aligned_cols=62  Identities=11%  Similarity=0.034  Sum_probs=45.7

Q ss_pred             HHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCCee
Q psy4132         309 SKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSPIY  388 (473)
Q Consensus       309 e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~Is  388 (473)
                      ...+.+|+.+| +++|.+..   .++..++.                    + .|   ++.+++..+++.+|.|+||.|+
T Consensus        10 ~~y~~~F~~~D-~~~G~i~~---~el~~~l~--------------------~-~g---l~~~~L~~Iw~~~D~~~dG~l~   61 (95)
T d2jxca1          10 AKYDAIFDSLS-PVNGFLSG---DKVKPVLL--------------------N-SK---LPVDILGRVWELSDIDHDGMLD   61 (95)
T ss_dssp             HHHHHHHHHTC-CBTTEEEH---HHHHHHHT--------------------T-SS---CCHHHHHHHHHHHCTTCSSEEE
T ss_pred             HHHHHHHHHhC-CCCCceeH---HHHHHHHH--------------------H-cC---CCHHHHHHHHHHhcCCCCCeEc
Confidence            45778899999 67744444   33333332                    2 12   7889999999999999999999


Q ss_pred             HHhhhcccee
Q psy4132         389 LKTYSSGVKV  398 (473)
Q Consensus       389 ~~EF~~~~~v  398 (473)
                      ++||..++..
T Consensus        62 ~~EF~~a~~L   71 (95)
T d2jxca1          62 RDEFAVAMFL   71 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999766653

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=97.54  E-value=2.7e-05  Score=60.71  Aligned_cols=31  Identities=19%  Similarity=0.085  Sum_probs=26.4

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      .++..+.++++.+|.|+||.|+|+||+..+.
T Consensus        49 ~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~   79 (100)
T d1psra_          49 KGTNYLADVFEKKDKNEDKKIDFSEFLSLLG   79 (100)
T ss_dssp             TTCCGGGTHHHHHCTTCSSCBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            4556788999999999999999999986553

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.4e-05  Score=63.56  Aligned_cols=66  Identities=14%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             cHHHHHHHhHHhcCCCCchhhHhhHHHHHHHHhchhhcCCCccchhHHHHHHHhhhCCCCCCHHHHHHHHHHhccCCCCC
Q psy4132         307 RESKLKFAFRIYDIDNDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDKLPDSP  386 (473)
Q Consensus       307 ~~e~l~~~F~~~D~d~dg~~~~~e~~el~~~L~~~~~~~~g~i~l~d~~~~~~~~~g~~~ls~~ei~~~~~~~D~~~dg~  386 (473)
                      ..+....+|+.+|+|++|.+..   .++..++.                    + .|   ++.+++.++++.+|.|+||.
T Consensus        20 e~~~y~~lF~~~D~d~~G~Is~---~e~~~~l~--------------------~-s~---L~~~~L~~Iw~l~D~d~dG~   72 (110)
T d1iq3a_          20 QREYYVNQFRSLQPDPSSFISG---SVAKNFFT--------------------K-SK---LSIPELSYIWELSDADCDGA   72 (110)
T ss_dssp             SHHHHHHHHHHHCCSSSSEEEH---HHHHHHCC--------------------S-SS---CSSCCHHHHHHHHCSSSCSE
T ss_pred             HHHHHHHHHHHhCCCcccchhH---HHHHHHHH--------------------h-hc---cchHHHHHHHHHhccCCCCe
Confidence            4567889999999999965555   33433332                    1 12   66777999999999999999


Q ss_pred             eeHHhhhccceee
Q psy4132         387 IYLKTYSSGVKVL  399 (473)
Q Consensus       387 Is~~EF~~~~~vl  399 (473)
                      |+++||..+++.+
T Consensus        73 l~~~EF~~am~Li   85 (110)
T d1iq3a_          73 LTLPEFCAAFHLI   85 (110)
T ss_dssp             EEHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHH
Confidence            9999998766533

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=97.46  E-value=9e-05  Score=56.60  Aligned_cols=66  Identities=23%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHhhCC-CCC-CCccHHHHhcchhc-----c----CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         236 VVDIRRLGKRFRKLDL-DNS-GALSIDEFMSLPEL-----Q----QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~-d~~-G~Is~~el~~l~~~-----~----~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      +..+..+..+|..+.. +++ ++++..||+.+...     .    ....++.+++.+|.|+||.|+|+||+.++..+
T Consensus         5 E~ai~~ii~vFhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~l   81 (94)
T d1j55a_           5 ETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAI   81 (94)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            4566788899999853 443 68999999996321     1    23358999999999999999999999988654

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.7e-05  Score=63.77  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             CCceeHHHHHHHHccccccccchHHHHHHHHHHHhhC---CCCCCCccHHHHhcchh----cc--CCHHHHHHHHHhcCC
Q psy4132         214 DGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLD---LDNSGALSIDEFMSLPE----LQ--QNPLVQRVIDIFDED  284 (473)
Q Consensus       214 dG~I~f~EF~~~~~~~~~~~~~~~~~~~l~~~F~~~D---~d~~G~Is~~el~~l~~----~~--~~~~~~~l~~~~D~d  284 (473)
                      .+.++=+++..+...   ..-...+++.+.+.|+...   .+.+|.|+.++|+.+..    .+  .++.++++|+.||.+
T Consensus         5 ~s~l~p~~l~~L~~~---T~fs~~ei~~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~~~~l~~rlF~~FD~~   81 (118)
T d1tuza_           5 RGLISPSDFAQLQKY---MEYSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETG   81 (118)
T ss_dssp             CSCSCHHHHHHHHHH---HHHCCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCC
T ss_pred             cCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCchHHHHHHHHHHHccc
Confidence            345666666665542   2234567788888887553   25789999999999632    22  245689999999999


Q ss_pred             CC--------CcccHHHHHHHHhhcccCCCcHHHH
Q psy4132         285 RN--------GEVDFKEFIQGVSQFSVKGDRESKL  311 (473)
Q Consensus       285 ~d--------G~I~~~EF~~~l~~~~~~~~~~e~l  311 (473)
                      ++        |.|+|.||+.+++.+. .+.+++++
T Consensus        82 ~d~~~~~~~~g~I~f~efv~~LS~l~-~G~~eeKL  115 (118)
T d1tuza_          82 HCLNETNVTKDVVCLNDVSCYFSLLE-GGRPEDKL  115 (118)
T ss_dssp             CCTTCCCCCSCCEEHHHHHHHHHHHH-SCCCSCCC
T ss_pred             cccccccCCCceeeHHHHHHHHHHHc-CCCHHHhh
Confidence            76        8899999999999884 44444443

>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]

Probab=97.28  E-value=0.00025  Score=52.67  Aligned_cols=65  Identities=18%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHhhCC-CC-CCCccHHHHhcchhc-----c----CCH-HHHHHHHHhcCCCCCcccHHHHHHHHhh
Q psy4132         236 VVDIRRLGKRFRKLDL-DN-SGALSIDEFMSLPEL-----Q----QNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQ  300 (473)
Q Consensus       236 ~~~~~~l~~~F~~~D~-d~-~G~Is~~el~~l~~~-----~----~~~-~~~~l~~~~D~d~dG~I~~~EF~~~l~~  300 (473)
                      +..+..+..+|..+.. ++ .++++..||+.+...     .    .++ .++.+++.+|.|+||.|+|.||+.++..
T Consensus         6 E~ai~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~   82 (83)
T d1xk4c1           6 ERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHhh
Confidence            4556778899988863 33 479999999995321     1    233 3799999999999999999999988753

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00015  Score=58.06  Aligned_cols=72  Identities=14%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             CCCCCccHHHHhcchhc--cCCHHHHHHHHHhc------CCCCCcccHHHHHHHHhhcccCCC-cHHHHHHHhHHhcCCC
Q psy4132         252 DNSGALSIDEFMSLPEL--QQNPLVQRVIDIFD------EDRNGEVDFKEFIQGVSQFSVKGD-RESKLKFAFRIYDIDN  322 (473)
Q Consensus       252 d~~G~Is~~el~~l~~~--~~~~~~~~l~~~~D------~d~dG~I~~~EF~~~l~~~~~~~~-~~e~l~~~F~~~D~d~  322 (473)
                      +.++.|+++++.++...  .....++.+++.|.      ...+|.|++++|..++..+-..++ +..-+..+|+.||.++
T Consensus         3 ~~~s~l~p~~l~~L~~~T~fs~~ei~~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~~~~l~~rlF~~FD~~~   82 (118)
T d1tuza_           3 KERGLISPSDFAQLQKYMEYSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETGH   82 (118)
T ss_dssp             CCCSCSCHHHHHHHHHHHHHCCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCCC
T ss_pred             cccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCchHHHHHHHHHHHcccc
Confidence            35677999999987433  23445777777773      246799999999999887655443 4667777888888776


Q ss_pred             C
Q psy4132         323 D  323 (473)
Q Consensus       323 d  323 (473)
                      +
T Consensus        83 d   83 (118)
T d1tuza_          83 C   83 (118)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.23  E-value=0.0001  Score=42.71  Aligned_cols=29  Identities=24%  Similarity=0.427  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhCCCCCCCccHHHHhcch
Q psy4132         238 DIRRLGKRFRKLDLDNSGALSIDEFMSLP  266 (473)
Q Consensus       238 ~~~~l~~~F~~~D~d~~G~Is~~el~~l~  266 (473)
                      ..++|.+.|+.||+|.+|+|+.+||..+.
T Consensus         2 sEeELae~FRifDkNaDGyiD~eEl~~il   30 (34)
T d1ctda_           2 SEEELANAFRIFDKNADGYIDIEELGEIL   30 (34)
T ss_dssp             HHHHHHHHHHTTCCSSSSCBCHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCCcccccHHHHHHHH
Confidence            35788999999999999999999998754

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=97.08  E-value=0.0006  Score=51.45  Aligned_cols=30  Identities=17%  Similarity=0.040  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .+|..+.++++.+|.|+||.|+|+||...+
T Consensus        49 ~d~~~~d~~m~~LD~n~Dg~vdF~EF~~li   78 (90)
T d3cr5x1          49 KEQEVVDKVMETLDSDGDGECDFQEFMAFV   78 (90)
T ss_dssp             CSHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence            568889999999999999999999997644

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=97.07  E-value=0.00018  Score=43.30  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=26.7

Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      |++++.++|+.||+|+||.|+..|+...++
T Consensus         1 seeel~eAF~~FDkDg~G~Is~~EL~~vm~   30 (33)
T d2hf5a1           1 SEEEIREAFRVFDKDGNGYISAAELRHVMT   30 (33)
T ss_dssp             CHHHHHHHHHHHSSSCCSCBCHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            578999999999999999999999876554

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=96.57  E-value=0.0017  Score=49.38  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      -+|+.+.++++.+|.|+||.|+|+||+..+
T Consensus        49 ~d~~~vd~im~~LD~n~Dg~vdF~EF~~li   78 (95)
T d1qlsa_          49 KDPGVLDRMMKKLDLDSDGQLDFQEFLNLI   78 (95)
T ss_dssp             CCTHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence            467889999999999999999999997654

>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]

Probab=96.50  E-value=0.0029  Score=46.69  Aligned_cols=29  Identities=10%  Similarity=0.093  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .|..+.++++.+|.|+||.|+|+||...+
T Consensus        52 d~~~vd~~m~~LD~n~Dg~vdF~EF~~li   80 (83)
T d1xk4c1          52 NEKVIEHIMEDLDTNADKQLSFEEFIMLM   80 (83)
T ss_dssp             CHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence            56678999999999999999999998643

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=96.39  E-value=0.0021  Score=48.70  Aligned_cols=30  Identities=13%  Similarity=0.057  Sum_probs=24.6

Q ss_pred             CCHHHHHHHHHHhccCCCCCeeHHhhhccc
Q psy4132         367 LSPEDLLNSCLALDKLPDSPIYLKTYSSGV  396 (473)
Q Consensus       367 ls~~ei~~~~~~~D~~~dg~Is~~EF~~~~  396 (473)
                      .+|..+.++++.+|.|+||.|+|+||...+
T Consensus        49 ~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li   78 (94)
T d1j55a_          49 KDKDAVDKLLKDLDANGDAQVDFSEFIVFV   78 (94)
T ss_dssp             ---CHHHHHHHHHCSSSSSSEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence            456779999999999999999999998654

>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Osteonectin
domain: C-terminal (EC) domain of BM-40/SPARC/osteonectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0014  Score=53.91  Aligned_cols=62  Identities=19%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhCCC-CCCCccHHHHhcchhcc--CCHHHHHHHHHhcCCCCCcccHHHHHHHHhhc
Q psy4132         240 RRLGKRFRKLDLD-NSGALSIDEFMSLPELQ--QNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF  301 (473)
Q Consensus       240 ~~l~~~F~~~D~d-~~G~Is~~el~~l~~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~~~  301 (473)
                      ..+...|..+|.| +||.|+..||+.+....  ...=+...+..+|.|+||.|++.||...+...
T Consensus        77 ~~v~W~F~~LD~n~~D~~L~~~EL~~l~~~L~~~e~C~~~F~~~CD~n~D~~Is~~EW~~Cf~v~  141 (151)
T d1sraa_          77 FPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK  141 (151)
T ss_dssp             HHHHHHHHHHCCTTCSSEECTTTTGGGGSTTSTTGGGHHHHHHHHCTTCSSSEEHHHHHHHTTCC
T ss_pred             ccceeehhhcCCCCCCCccCHHHHHHHHHhhcCCchHHHHHHHHhcCCCCCcCCHHHHHHHcCCC
Confidence            3566779999999 59999999999986432  22337889999999999999999999887543

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.13  E-value=0.001  Score=38.37  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHhccCCCCCeeHHhhhccce
Q psy4132         368 SPEDLLNSCLALDKLPDSPIYLKTYSSGVK  397 (473)
Q Consensus       368 s~~ei~~~~~~~D~~~dg~Is~~EF~~~~~  397 (473)
                      |.+++.+.|+.||+|+||.|+.+||...++
T Consensus         2 sEeELae~FRifDkNaDGyiD~eEl~~ilr   31 (34)
T d1ctda_           2 SEEELANAFRIFDKNADGYIDIEELGEILR   31 (34)
T ss_dssp             HHHHHHHHHHTTCCSSSSCBCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence            467899999999999999999999976543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.01  Score=45.69  Aligned_cols=74  Identities=24%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee----cCccccccchhhhhHHHhhhhcccccCcccEEEEeecCC
Q psy4132          14 DESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ----KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAV   89 (473)
Q Consensus        14 ~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~----~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~~   89 (473)
                      .|.++++...|+.       ..++|+|+||+-||.|.    ....+++++..|.......      -.|||+.|.+-...
T Consensus         5 s~~vll~v~~v~y-------KK~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Sp------e~s~Kv~Lkiv~~~   71 (108)
T d2rnrb1           5 SEEVLLIVKKVRQ-------KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISP------EGKAKIQLQLVLHA   71 (108)
T ss_dssp             CCCCCEEEEEEEE-------SSCEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECC------TTCSSEEEEEEETT
T ss_pred             hhhheeeecceEE-------ecCCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCC------CCcccceeEEEEeC
Confidence            4556666666664       35899999999999999    3345889999988764433      47889998886421


Q ss_pred             CCCCCCCCCCCCCCeEEEeccCC
Q psy4132          90 PGKNLGPSATSAYDYVKLSFREG  112 (473)
Q Consensus        90 ~~~~~~p~~~~~~~~iklsFr~g  112 (473)
                                  +.-..|.|-+.
T Consensus        72 ------------~~s~~F~Ftn~   82 (108)
T d2rnrb1          72 ------------GDTTNFHFSNE   82 (108)
T ss_dssp             ------------SCEEEEEECCT
T ss_pred             ------------CCeEEEEECCh
Confidence                        12356788765

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=94.64  E-value=0.021  Score=44.43  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             CCCCCCCCceEEeecceeeecCCCCCcccCcEEEeeeeeeeee------cC--ccccccchhhhhHHHhhhhcccccCcc
Q psy4132           8 SFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ------KD--ITLCLALSYIQNAVEEAKSMFNLTAGR   79 (473)
Q Consensus         8 ~~~l~~~E~~~~~~~~v~ly~g~~~~~~~~G~l~LTshRii~~------~~--~~~~l~l~~v~~~~~~~~~~~~~~~s~   79 (473)
                      .+.|.+||.+...-..+            ...+..|++|||.+      ++  .-.+||.+.|..+..+.+|.|  --..
T Consensus        16 ~~lL~~gE~i~~~yk~~------------rD~~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEtAGtf--D~Ds   81 (116)
T d3dcxa1          16 GPIMGDNEQLALAYRVI------------RDMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTF--DMDA   81 (116)
T ss_dssp             GGGSCTTCCEEEEEEET------------TEEEEEESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEECCSST--TSCE
T ss_pred             HHhcCCCCEEEEEEEee------------cceEEEecceEEEEeccccccceEEEEEEehhHeEEEEEEeCccc--cCcc
Confidence            56788999887765332            44555799999999      22  235999999999988877774  4567


Q ss_pred             cEEEEeecCCCCCCCCCCCCCCCCeEEEeccCCC-chHHHHHHHHH
Q psy4132          80 KIILYLSKAVPGKNLGPSATSAYDYVKLSFREGI-QNEFLDALKST  124 (473)
Q Consensus        80 ki~~~l~~~~~~~~~~p~~~~~~~~iklsFr~gg-~~~F~~~l~~~  124 (473)
                      .+.+.++.             ....+++-|+++. -...++.|...
T Consensus        82 Elki~~~~-------------~~~~i~~ef~~~~di~~i~~~La~~  114 (116)
T d3dcxa1          82 ELKLWISG-------------QKDPLVKELKKGTDVVGIQKTIANF  114 (116)
T ss_dssp             EEEEEETT-------------CSSCEEEEECBTSCHHHHHHHHHHH
T ss_pred             cEEEEEec-------------CceEEEEEeCCccCHHHHHHHHHHh
Confidence            78888742             2224788998775 46777766553

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.58  E-value=0.036  Score=37.83  Aligned_cols=45  Identities=11%  Similarity=0.182  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      .+++..++.++.+|..++|+.+++|..-..+++...++.|.+.+-
T Consensus         6 ~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           6 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence            578889999999999999999999999999999999999998864

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.54  E-value=0.037  Score=37.77  Aligned_cols=44  Identities=14%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++.+++.++.+|..++|+..|+|......+|...++.|.+-|
T Consensus         6 ~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~   49 (60)
T d1i1ga1           6 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG   49 (60)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence            67889999999999999999999999999999999999999865

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.46  E-value=0.015  Score=43.05  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             HHHHHHHHH-HHhhCCCCCHHHHHHhh--CCcHHHHHHHHHHHHHcCCccccC-------CcccccccccccCc
Q psy4132         407 ASFVEKTYE-IVSQNVFVTVEQFSRLA--SVSLVIAKHRLLLAETHGKLCRDQ-------SIEGLRFYENKFLL  470 (473)
Q Consensus       407 ~~~~~~~~~-~~~~~~~ls~~e~a~~~--~~s~~~~~~~l~~~~~~g~l~~d~-------~~~g~~~~~n~~~~  470 (473)
                      ..++..+.+ +++...+++..++++.+  ++|..-++..|...|..|+|.++.       +..|.|||.+..+.
T Consensus         7 ~~IL~~Ive~y~~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~GriPT~~g~r~yv~~ll~   80 (87)
T d1stza1           7 RKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLRFYYEEMLK   80 (87)
T ss_dssp             HHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCccCHHHHHHHhCCCCCHHHHHHHHHHHHHCCcccCCCCCCCCcccHHHHHHHHHHHcc
Confidence            355666654 45556789999999995  568999999999999999999976       34588999887654

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.04  Score=38.01  Aligned_cols=44  Identities=14%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .++++.++.++.+|..++|..+|+|...+..++...++.|.+.+
T Consensus         8 ~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~   51 (63)
T d2cg4a1           8 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG   51 (63)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence            67889999999999999999999999999999999999999874

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=94.17  E-value=0.051  Score=37.17  Aligned_cols=50  Identities=10%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      -+++++.|+.+....+.++..++|+.+|+|.+-+.+.+...++.|+|.+.
T Consensus         5 ~EdYLk~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1           5 MEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHhCCCchhHHHHHHHHHHCCCEEEc
Confidence            47899999999888899999999999999999999999999999998764

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.054  Score=37.32  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccc
Q psy4132         408 SFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEG  460 (473)
Q Consensus       408 ~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g  460 (473)
                      +...+++.+++.+..+|.+|+|+.+++|..-....|...++.|........-|
T Consensus         5 ~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g~G   57 (63)
T d1biaa1           5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKG   57 (63)
T ss_dssp             HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTE
T ss_pred             HHHHHHHHHHHHCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCcEEEeCCCe
Confidence            34567889999989999999999999999999999999999998665444445

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.074  Score=36.59  Aligned_cols=53  Identities=11%  Similarity=0.076  Sum_probs=48.2

Q ss_pred             cCcHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         404 CEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      .+.+.+++.|+.+.+..+.++..++|+.++++.+-+.+.+...+++|+|..+.
T Consensus         5 ~s~EdYL~~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~   57 (63)
T d2isya1           5 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG   57 (63)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcC
Confidence            34588999999998888999999999999999999999999999999998654

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=93.81  E-value=0.06  Score=37.06  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR  454 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~  454 (473)
                      .+++..++.++.+|..++|+..|+|..-...++...++.|.+.+
T Consensus         8 ~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~   51 (63)
T d2cfxa1           8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ   51 (63)
T ss_dssp             HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence            67888999999999999999999999999999999999999875

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=93.49  E-value=0.096  Score=36.35  Aligned_cols=62  Identities=15%  Similarity=0.143  Sum_probs=51.2

Q ss_pred             cCcHHHHHHHHHHHhh---CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccccc
Q psy4132         404 CEDASFVEKTYEIVSQ---NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYEN  466 (473)
Q Consensus       404 ~~~~~~~~~~~~~~~~---~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~~n  466 (473)
                      .+++++.+.+.+.+..   +.++|+.+||+.+|++=.-+...|-..++.|.|++-.+ .=-+||.|
T Consensus         3 ~~~~~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~-tPP~W~~~   67 (70)
T d1sfua_           3 VNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS-NPPKWFKN   67 (70)
T ss_dssp             CCSHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC-SSCEEEEC
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCchHHHHHHHhCCCHHHHHHHHHHHHHCCCeecCCC-cCCccccc
Confidence            4567777777766655   56899999999999999999999999999999998775 24567765

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.1  Score=36.83  Aligned_cols=51  Identities=14%  Similarity=0.021  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhCC-CCCHHHHHHhhCC-cHHHHHHHHHHHHHcCCccccCC
Q psy4132         407 ASFVEKTYEIVSQNV-FVTVEQFSRLASV-SLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       407 ~~~~~~~~~~~~~~~-~ls~~e~a~~~~~-s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      ..++..|..++..+| +-|..|||..+|+ |..-+...|...|+.|+|-|+.+
T Consensus         8 ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~   60 (71)
T d1jhfa1           8 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSG   60 (71)
T ss_dssp             HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSS
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCCC
Confidence            567778888887765 6999999999998 89999999999999999999864

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.25  E-value=0.096  Score=40.21  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFY  464 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~~~  464 (473)
                      .+++..+-..+.+|..|+|+..+++-.-+...|...+++|+|.|.....|-|+|
T Consensus        23 ~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~   76 (109)
T d1sfxa_          23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGY   76 (109)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEE
T ss_pred             HHHHHHHHhcCCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEEeccCCCccc
Confidence            344555556699999999999999999999999999999999987655554543

>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.57  E-value=0.19  Score=34.85  Aligned_cols=59  Identities=19%  Similarity=0.056  Sum_probs=49.9

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccc--ccccccccC
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEG--LRFYENKFL  469 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g--~~~~~n~~~  469 (473)
                      ..++++.+..|++|...+...++|+-.=|+.-|+.....|.+=.|++-.|  ..|+|-.|.
T Consensus         6 t~vLe~a~~~G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~eGl~WvD~Q~~~e~~YWfPsl~~   66 (68)
T d1u5ta2           6 TKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPSWIT   66 (68)
T ss_dssp             HHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEECGGGGG
T ss_pred             HHHHHHHHHcCceeHHHHHHHhCCCHHHHHHHHHHHHhcCcEEEecCCCCCceeeChHhhc
Confidence            34667777789999999999999999999999999999999999987433  566677664

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=90.24  E-value=0.21  Score=34.98  Aligned_cols=47  Identities=6%  Similarity=0.029  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ...++.++...+.+|..|+|+.+++|..-+...+...++.|+|...+
T Consensus         8 ~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~~   54 (71)
T d1z05a1           8 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT   54 (71)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence            35678888888999999999999999999999999999999987543

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.16  E-value=0.36  Score=34.10  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             HHHHHHh-hCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         412 KTYEIVS-QNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       412 ~~~~~~~-~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      ++++++. ...++|..|+|+..++|..-+...|...++.|+|.||+
T Consensus         9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~   54 (75)
T d1mkma1           9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK   54 (75)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence            3444443 45789999999999999999999999999999999986

>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: RNA polymerase II transcription factor B 73 kDa, TFB1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.00  E-value=0.35  Score=36.78  Aligned_cols=49  Identities=22%  Similarity=0.313  Sum_probs=38.8

Q ss_pred             ccCcEEEeeeee----eeee---cCccccccchhhhhHHHhhhhcccccCcccEEEEeecCC
Q psy4132          35 FQRGELILTSHR----LFWQ---KDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAV   89 (473)
Q Consensus        35 ~~~G~l~LTshR----ii~~---~~~~~~l~l~~v~~~~~~~~~~~~~~~s~ki~~~l~~~~   89 (473)
                      .++|.|+++.-+    ++|.   +...++|||..|.++.-..      -.|||+.|.+-..+
T Consensus        10 KkdG~ltis~D~~~~~~~w~~~~g~~~vti~l~~ItnLQqTP------~tspKvmLKI~~k~   65 (114)
T d1y5oa1          10 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATP------ASSEKMMLRLIGKV   65 (114)
T ss_dssp             SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECC------TTCSSEEEEEEECS
T ss_pred             eccceEEEccCCCceEEEeccCCCCccEEEEhhhhhhhccCC------CCCcceEEEEEEec
Confidence            589999998765    5555   7778999999999986544      48999999996543

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=89.19  E-value=0.2  Score=38.20  Aligned_cols=48  Identities=15%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             HHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccc
Q psy4132         415 EIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLR  462 (473)
Q Consensus       415 ~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~  462 (473)
                      .++...+.+|..++|+.++++.+-+...|...++.|+|.|.....+-|
T Consensus        29 ~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~r   76 (109)
T d2d1ha1          29 KMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKI   76 (109)
T ss_dssp             HHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-----
T ss_pred             HHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEeecCCCCC
Confidence            445567789999999999999999999999999999999877665533

>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Osteonectin
domain: C-terminal (EC) domain of BM-40/SPARC/osteonectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.066  Score=43.60  Aligned_cols=27  Identities=15%  Similarity=0.023  Sum_probs=22.7

Q ss_pred             HHHHHHHhccCCCCCeeHHhhhcccee
Q psy4132         372 LLNSCLALDKLPDSPIYLKTYSSGVKV  398 (473)
Q Consensus       372 i~~~~~~~D~~~dg~Is~~EF~~~~~v  398 (473)
                      +..+++..|.|+||.||+.||...+-+
T Consensus       114 ~~~F~~~CD~n~D~~Is~~EW~~Cf~v  140 (151)
T d1sraa_         114 TTRFFETCDLDNDKYIALDEWAGCFGI  140 (151)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCCcCCHHHHHHHcCC
Confidence            556788999999999999999876653

>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: Hypothetical protein C20orf116 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.61  E-value=0.41  Score=33.12  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             cHHHHHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcc--ccC
Q psy4132         406 DASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLC--RDQ  456 (473)
Q Consensus       406 ~~~~~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~--~d~  456 (473)
                      ....+.....++.....+..+|+|..|++....+.++|+..|+.|.|.  .|+
T Consensus         5 ~q~lL~~FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDD   57 (72)
T d1wi9a_           5 SSGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD   57 (72)
T ss_dssp             SCCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred             hHHHHHHHHHHHHHCCEeeHHHHHHHcCCcHHHHHHHHHHHHHCCCeeeEEcC
Confidence            346677788889899999999999999999999999999999999986  555

>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FaeA-like
domain: P fimbrial regulatory protein PapI
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=1.3  Score=29.70  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=45.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCccccc
Q psy4132         411 EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIEGLR  462 (473)
Q Consensus       411 ~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~g~~  462 (473)
                      ..|+.++...++-...|||..+++|.--|+-.|...|..|.+-|.---.|-+
T Consensus         3 n~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~RsPlRrGa~   54 (73)
T d2htja1           3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMA   54 (73)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSS
T ss_pred             hHHHHHHHhcCCccHHHHHHHhhhHHHHHHHHHHHHHHhcCcccChhhhhhH
Confidence            4577788777777999999999999999999999999999999987666643

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=1.4  Score=28.97  Aligned_cols=39  Identities=15%  Similarity=0.115  Sum_probs=35.8

Q ss_pred             hCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCC
Q psy4132         419 QNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQS  457 (473)
Q Consensus       419 ~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~  457 (473)
                      .....|+-++|..++++=..++..|-..+..|+||+...
T Consensus        13 ~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~g   51 (59)
T d2gxba1          13 EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG   51 (59)
T ss_dssp             TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred             CccchhHHHHHHHhCCcHHHHHHHHHHHHHccchhhcCC
Confidence            356899999999999999999999999999999999763

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.11  E-value=1.2  Score=30.20  Aligned_cols=45  Identities=16%  Similarity=0.096  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhh-CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCc
Q psy4132         408 SFVEKTYEIVSQ-NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKL  452 (473)
Q Consensus       408 ~~~~~~~~~~~~-~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l  452 (473)
                      +-..+++.++.. .+.+|..++|+.+++|..-+..-|...++.|.-
T Consensus         7 eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~   52 (65)
T d1j5ya1           7 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYN   52 (65)
T ss_dssp             HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCe
Confidence            345567777755 457999999999999999999999999999973

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=1  Score=31.11  Aligned_cols=46  Identities=15%  Similarity=0.032  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCcccc
Q psy4132         410 VEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRD  455 (473)
Q Consensus       410 ~~~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d  455 (473)
                      ...+++++...+.+|-.|+|+..|+|..-....+...++.|+|...
T Consensus         7 ~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~   52 (70)
T d1z6ra1           7 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL   52 (70)
T ss_dssp             HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence            3567888889999999999999999999999999999999988743

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=83.37  E-value=0.59  Score=33.79  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccC
Q psy4132         420 NVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQ  456 (473)
Q Consensus       420 ~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~  456 (473)
                      .+++|..++|+.++++.+-+...|...|+.|+|+|..
T Consensus        19 ~~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~   55 (85)
T d3ctaa1          19 RAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV   55 (85)
T ss_dssp             EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeec
Confidence            4689999999999999999999999999999999943

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=82.08  E-value=0.74  Score=36.34  Aligned_cols=48  Identities=10%  Similarity=0.028  Sum_probs=41.1

Q ss_pred             HHHHHHhhCCCCCHHHHHHhhCCcHHHHHHHHHHHHHcCCccccCCcc
Q psy4132         412 KTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCRDQSIE  459 (473)
Q Consensus       412 ~~~~~~~~~~~ls~~e~a~~~~~s~~~~~~~l~~~~~~g~l~~d~~~~  459 (473)
                      .++..+...+++|..++|+.++++-+-+...+...+++|+|+|-.++.
T Consensus        36 ~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~   83 (140)
T d2etha1          36 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPV   83 (140)
T ss_dssp             HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeeeccc
Confidence            345555667899999999999999999999999999999999865444