Psyllid ID: psy4183

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90

MSFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT

cccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHccccccccccccEEHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEcccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHcccccc

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHccccccHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccEEEcccEcccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEEcccccccEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEcccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHcHHccc

MSFDLPTFVQIYKRVRSSHLALKVLFHVLRsinpfgnehSVLFYVEynkpwiffelipfvglgVIGGIIAYIFIRLNLKWcryrkmsrlgqypvTEVLVITAITTLisfpnpftrmsTSQLIYLLFSQcgglsmdlcsssvlpsgsfglvfqtplihslkhdyhnswlnffhnkiplhtfydseegsvAGIIDIGSswmsdlkyglcpeafwlnkeqccwssnetsfedtgncsQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMfapyacgsgipeqnysdvegsSLVVYVGksghsssksCGRIMLAVSAglslrkgrtpwftlrpcignILSYlfpkygrneAKKREILSAAAAAGVSVAFGAPIGGVLFsleevsyyfplkTLWRSFFCALIAAFVLRsinpfgnehSVLFYVEynkpwiffelipfvglgVIGGIIAYIFIRLNLKWcryrkmsrlgqypvTEVLVITAITTLisfpnpftrmstkagpgVYTAVWLLMITLVLKLVLTVFTFgikvpcglfipslclggivgRIVGIGMQQlafhyphiwifagecstndcitpglYAMVGAAAVLGGVTRMTGNILSYlfpkygrneAKKREILSAAAAAGVSVAFGAPIGGVLFsleevsyyfplkTLWRSFFCALIAAFVLRsinpfgnehSVLFYVEynkpwiffelipfvglgVIGGIIAYIFIRLNLKWcryrkmsrlgqypvTEVLVITAITTLisfpnpftrmsTSQLIYLLFSQcggvsynnglcDYVInhnatstsnpttseagpgVYTAVWLLMITLVLKLVLTVFTFgikvpcglfipslclggivgRIVGIGMQQlafhyphiwifagecstndcitpglYAMVGAAAVlggvtrmt

MSFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSghssskscGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATstsnpttseAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT

MSFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVgksghsssksCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILsaaaaagvsvafgaPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAvwllmitlvlklvltvftFGIKVPCGLFIPSLCLggivgrivgigMQQLAFHYPHIWIFAGECSTNDCITPGLYAMvgaaavlggvTRMTGNILSYLFPKYGRNEAKKREILsaaaaagvsvafgaPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAvwllmitlvlklvltvftFGIKVPCGLFIPSLCLggivgrivgigMQQLAFHYPHIWIFAGECSTNDCITPGLYAMvgaaavlggvTRMT

****LPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKS******SCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNA***********GPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGV****

*SFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT

MSFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWS*********GNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT

*SFDLPTFVQIYKRVRSSHLALKVLFHVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGLSMDLCSSSVLPSGSFGLVFQTPLIHSLKHDYHNSWLNFFHNKIPLHTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTKAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPFTRMSTSQLIYLLFSQCGGVSYNNGLCDYVI****TSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		898	2.2.26 [Sep-21-2011]
P51791		818	H(+)/Cl(-) exchange trans	yes	N/A	0.472	0.518	0.548	1e-131
P51792		818	H(+)/Cl(-) exchange trans	yes	N/A	0.472	0.518	0.548	1e-131
O18894		818	H(+)/Cl(-) exchange trans	yes	N/A	0.472	0.518	0.548	1e-131
P51790		818	H(+)/Cl(-) exchange trans	yes	N/A	0.472	0.518	0.548	1e-131
Q9R279		760	H(+)/Cl(-) exchange trans	yes	N/A	0.472	0.557	0.548	1e-131
P51793		760	H(+)/Cl(-) exchange trans	no	N/A	0.496	0.586	0.533	1e-130
P51794		747	H(+)/Cl(-) exchange trans	no	N/A	0.496	0.597	0.531	1e-130
Q9TTU3		746	H(+)/Cl(-) exchange trans	no	N/A	0.496	0.597	0.524	1e-130
Q61418		747	H(+)/Cl(-) exchange trans	no	N/A	0.496	0.597	0.525	1e-129
Q99P66		746	H(+)/Cl(-) exchange trans	no	N/A	0.494	0.595	0.520	1e-129

>sp\|P51791\|CLCN3_MOUSE H(+)/Cl(-) exchange transporter 3 OS=Mus musculus GN=Clcn3 PE=1 SV=2	Back alignment and function desciption

 Score =  470 bits (1210), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 319/467 (68%), Gaps = 43/467 (9%)

Query: 186 GSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGS 245
           G++AG+IDI + WM+DLK G+C  A W N EQCCW SNET+FE+   C QW TWAE++  
Sbjct: 140 GALAGLIDIAADWMTDLKEGICLSALWYNHEQCCWGSNETTFEERDKCPQWKTWAELIIG 199

Query: 246 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVG 305
             EG  +Y + Y+ +I WAL FA LA  LV++FAPYACGSGIPE   + + G  +  Y+G
Sbjct: 200 QAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIK-TILSGFIIRGYLG 258

Query: 306 KSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILS 365
           K   +       ++LAV++GLSL K   P   +  C GNI SYLFPKY  NEAKKRE+LS
Sbjct: 259 K--WTLMIKTITLVLAVASGLSLGK-EGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLS 315

Query: 366 AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 425
           AA+AAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFF AL+AAFVLRSINPFGN   V
Sbjct: 316 AASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLV 375

Query: 426 LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVIT 485
           LFYVEY+ PW  FEL PF+ LGV GG+    FIR N+ WCR RK ++ G+YPV EV+++ 
Sbjct: 376 LFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTKFGKYPVLEVIIVA 435

Query: 486 AITTLISFPNPFTRMSTK--------------------------------------AGPG 507
           AIT +I+FPNP+TR++T                                       AG G
Sbjct: 436 AITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGVG 495

Query: 508 VYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHI 567
           VY+A+W L + L+ K+++TVFTFGIKVP GLFIPS+ +G I GRIVGI ++QLA+++   
Sbjct: 496 VYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDW 555

Query: 568 WIFAGECSTN-DCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYG 613
           +IF   C    DCITPGLYAMVGAAA LGGVTRMT +++  +F   G
Sbjct: 556 FIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTG 602

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the endosome and synaptic vesicle lumen, and may thereby affect vesicle trafficking and exocytosis. May play an important role in neuronal cell function through regulation of membrane excitability by protein kinase C. It could help neuronal cells to establish short-term memory.
Mus musculus (taxid: 10090)

>sp\|P51792\|CLCN3_RAT H(+)/Cl(-) exchange transporter 3 OS=Rattus norvegicus GN=Clcn3 PE=2 SV=2	Back alignment and function description

>sp\|O18894\|CLCN3_RABIT H(+)/Cl(-) exchange transporter 3 OS=Oryctolagus cuniculus GN=CLCN3 PE=2 SV=3	Back alignment and function description

>sp\|P51790\|CLCN3_HUMAN H(+)/Cl(-) exchange transporter 3 OS=Homo sapiens GN=CLCN3 PE=1 SV=2	Back alignment and function description

>sp\|Q9R279\|CLCN3_CAVPO H(+)/Cl(-) exchange transporter 3 OS=Cavia porcellus GN=CLCN3 PE=2 SV=1	Back alignment and function description

>sp\|P51793\|CLCN4_HUMAN H(+)/Cl(-) exchange transporter 4 OS=Homo sapiens GN=CLCN4 PE=1 SV=2	Back alignment and function description

>sp\|P51794\|CLCN4_RAT H(+)/Cl(-) exchange transporter 4 OS=Rattus norvegicus GN=Clcn4 PE=2 SV=1	Back alignment and function description

>sp\|Q9TTU3\|CLCN5_RABIT H(+)/Cl(-) exchange transporter 5 OS=Oryctolagus cuniculus GN=CLCN5 PE=2 SV=1	Back alignment and function description

>sp\|Q61418\|CLCN4_MOUSE H(+)/Cl(-) exchange transporter 4 OS=Mus musculus GN=Clcn4 PE=2 SV=2	Back alignment and function description

>sp\|Q99P66\|CLCN5_CAVPO H(+)/Cl(-) exchange transporter 5 OS=Cavia porcellus GN=CLCN5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		898
307199100		833	Chloride channel protein 3 [Harpegnathos	0.496	0.535	0.660	1e-165
158294756		917	AGAP005777-PA [Anopheles gambiae str. PE	0.496	0.486	0.658	1e-163
380027901		853	PREDICTED: H(+)/Cl(-) exchange transport	0.496	0.522	0.656	1e-163
328793201		865	PREDICTED: H(+)/Cl(-) exchange transport	0.496	0.515	0.656	1e-163
350422945		836	PREDICTED: H(+)/Cl(-) exchange transport	0.496	0.533	0.656	1e-163
340727421		871	PREDICTED: LOW QUALITY PROTEIN: H(+)/Cl(	0.496	0.512	0.656	1e-163
383858045		870	PREDICTED: LOW QUALITY PROTEIN: H(+)/Cl(	0.496	0.512	0.652	1e-162
157123916		877	chloride channel protein 3 [Aedes aegypt	0.496	0.508	0.652	1e-162
170037222		1047	chloride channel protein 3 [Culex quinqu	0.496	0.425	0.653	1e-161
157123918		654	chloride channel protein 3 [Aedes aegypt	0.459	0.631	0.685	1e-160

>gi\|307199100\|gb\|EFN79810.1\| Chloride channel protein 3 [Harpegnathos saltator]	Back alignment and taxonomy information

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 325/492 (66%), Positives = 376/492 (76%), Gaps = 46/492 (9%)

Query: 186 GSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGS 245
           G  AG+IDIG+SWM+DLK+G+CP+AFWLNKEQCCWS NET+F D GNCSQW TW EV   
Sbjct: 160 GVAAGVIDIGASWMTDLKFGICPQAFWLNKEQCCWSYNETTF-DGGNCSQWWTWPEVFNQ 218

Query: 246 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVG 305
           +KEG   YT+ Y+F+IAWALLFASL+A LVRMFAPYACGSGIPE   + + G  +  Y+G
Sbjct: 219 SKEGAGPYTISYLFYIAWALLFASLSASLVRMFAPYACGSGIPEIK-TILSGFIIRGYLG 277

Query: 306 KSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILS 365
           K      KS G ++L+VSAGLSL K   P   +  CIGNI SYLFPKYGRNEAKKREILS
Sbjct: 278 K-WTLIIKSVG-LILSVSAGLSLGK-EGPMVHIACCIGNIFSYLFPKYGRNEAKKREILS 334

Query: 366 AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 425
           AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV
Sbjct: 335 AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 394

Query: 426 LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVIT 485
           LFYVEYNKPWIFFELIPFV LG+IGG+IA +FI+ NL WCRYRK S+LGQYPVTEVL++T
Sbjct: 395 LFYVEYNKPWIFFELIPFVMLGIIGGVIATLFIKANLFWCRYRKTSKLGQYPVTEVLIVT 454

Query: 486 AITTLISFPNPFTRMSTK------------------------------------AGPGVY 509
            +T +I +PNP+TRMST                                     AGPGVY
Sbjct: 455 VVTAVIGYPNPYTRMSTSQLIYLLFSQCGVSNADMLCDYNRNFTAVKSAIEIAAAGPGVY 514

Query: 510 TAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWI 569
            A+WLL++ L+LKL++T+FTFG+KVPCGLFIPSLCLG I+GRIVGIGM+QLA++YPHIW+
Sbjct: 515 KAIWLLVLALILKLIMTIFTFGMKVPCGLFIPSLCLGAIMGRIVGIGMEQLAYNYPHIWM 574

Query: 570 FAGECSTN-DCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAA 628
           F+ ECST  DCITPGLYAMVGAAAVLGGVTRMT +++  +F   G      R I+   AA
Sbjct: 575 FSEECSTGVDCITPGLYAMVGAAAVLGGVTRMTVSLVVIMFELTG----GVRYIVPLMAA 630

Query: 629 AGVSVAFGAPIG 640
           A  S   G  +G
Sbjct: 631 AMASKWVGDALG 642

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|158294756\|ref\|XP_001688728.1\| AGAP005777-PA [Anopheles gambiae str. PEST] gi\|158294758\|ref\|XP_315792.4\| AGAP005777-PB [Anopheles gambiae str. PEST] gi\|157015713\|gb\|EDO63734.1\| AGAP005777-PA [Anopheles gambiae str. PEST] gi\|157015714\|gb\|EAA11899.4\| AGAP005777-PB [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|380027901\|ref\|XP_003697653.1\| PREDICTED: H(+)/Cl(-) exchange transporter 3-like [Apis florea]	Back alignment and taxonomy information

>gi\|328793201\|ref\|XP_392670.3\| PREDICTED: H(+)/Cl(-) exchange transporter 3-like isoform 1 [Apis mellifera]	Back alignment and taxonomy information

>gi\|350422945\|ref\|XP_003493337.1\| PREDICTED: H(+)/Cl(-) exchange transporter 3-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340727421\|ref\|XP_003402042.1\| PREDICTED: LOW QUALITY PROTEIN: H(+)/Cl(-) exchange transporter 3-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|383858045\|ref\|XP_003704513.1\| PREDICTED: LOW QUALITY PROTEIN: H(+)/Cl(-) exchange transporter 3-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|157123916\|ref\|XP_001653972.1\| chloride channel protein 3 [Aedes aegypti] gi\|108882874\|gb\|EAT47099.1\| AAEL001752-PB [Aedes aegypti]	Back alignment and taxonomy information

>gi\|170037222\|ref\|XP_001846458.1\| chloride channel protein 3 [Culex quinquefasciatus] gi\|167880292\|gb\|EDS43675.1\| chloride channel protein 3 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|157123918\|ref\|XP_001653973.1\| chloride channel protein 3 [Aedes aegypti] gi\|108882875\|gb\|EAT47100.1\| AAEL001752-PA [Aedes aegypti]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		898
FB\|FBgn0036566		882	ClC-c "Chloride channel-c" [Dr	0.346	0.352	0.620	6.4e-112
UNIPROTKB\|E2R876		818	CLCN3 "Uncharacterized protein	0.348	0.382	0.561	4.9e-110
UNIPROTKB\|Q4LAL8		838	clcn3 "Chloride channel 3" [Ca	0.348	0.373	0.561	4.9e-110
UNIPROTKB\|E1C9F3		866	CLCN3 "Uncharacterized protein	0.348	0.361	0.555	4.9e-110
UNIPROTKB\|E1C9F7		818	CLCN3 "Uncharacterized protein	0.348	0.382	0.555	4.9e-110
MGI\|MGI:103555		818	Clcn3 "chloride channel 3" [Mu	0.348	0.382	0.555	6.3e-110
RGD\|621219		818	Clcn3 "chloride channel, volta	0.348	0.382	0.555	6.3e-110
UNIPROTKB\|D4A487		839	Clcn3 "H(+)/Cl(-) exchange tra	0.348	0.373	0.555	6.3e-110
UNIPROTKB\|D4A7Q0		866	Clcn3 "H(+)/Cl(-) exchange tra	0.348	0.361	0.555	6.3e-110
UNIPROTKB\|B9EGJ9		801	CLCN3 "CLCN3 protein" [Homo sa	0.348	0.390	0.555	8e-110

FB\|FBgn0036566 ClC-c "Chloride channel-c" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1049 (374.3 bits), Expect = 6.4e-112, Sum P(3) = 6.4e-112
 Identities = 196/316 (62%), Positives = 238/316 (75%)

Query:   186 GSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGS 245
             G VAG++DIG+SWMSDLK+G+CP AFW N+EQCC+ + ++ FE+ GNCS W TW E+ G 
Sbjct:   208 GCVAGMVDIGASWMSDLKHGICPPAFWFNREQCCYPAKQSVFEE-GNCSTWKTWPEIFGL 266

Query:   246 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVX 305
             ++ G   Y + Y++++ WALLFASL+A LVRMFAPYACGSGIPE   + + G  +  Y+ 
Sbjct:   267 DRNGTGPYIVAYIWYVLWALLFASLSASLVRMFAPYACGSGIPEIK-TILSGFIIRGYLG 325

Query:   306 XXXXXXXXXCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILX 365
                       G +ML+VSAGL+L K   P   +  CIGNI S++FPKYGRNEAKKREIL 
Sbjct:   326 KWTLLIKSV-G-LMLSVSAGLTLGK-EGPMVHIASCIGNIFSHVFPKYGRNEAKKREILS 382

Query:   366 XXXXXXXXXXXXXPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 425
                          PIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRS+ PFGNEHSV
Sbjct:   383 AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSLTPFGNEHSV 442

Query:   426 LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVIT 485
             LF+VEYNKPWIFFELIPFV LG++GG+I   FI+ NL WCRYRK S+LGQYPV EVL +T
Sbjct:   443 LFFVEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFSKLGQYPVMEVLFVT 502

Query:   486 AITTLISFPNPFTRMS 501
              +T +I +PNPFTRM+
Sbjct:   503 LVTAIICYPNPFTRMN 518

GO:0005254 "chloride channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

UNIPROTKB\|E2R876 CLCN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4LAL8 clcn3 "Chloride channel 3" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C9F3 CLCN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C9F7 CLCN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:103555 Clcn3 "chloride channel 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|621219 Clcn3 "chloride channel, voltage-sensitive 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A487 Clcn3 "H(+)/Cl(-) exchange transporter 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A7Q0 Clcn3 "H(+)/Cl(-) exchange transporter 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|B9EGJ9 CLCN3 "CLCN3 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O18894	CLCN3_RABIT	No assigned EC number	0.5481	0.4721	0.5183	yes	N/A
P51790	CLCN3_HUMAN	No assigned EC number	0.5481	0.4721	0.5183	yes	N/A
P51791	CLCN3_MOUSE	No assigned EC number	0.5481	0.4721	0.5183	yes	N/A
P51792	CLCN3_RAT	No assigned EC number	0.5481	0.4721	0.5183	yes	N/A
Q9R279	CLCN3_CAVPO	No assigned EC number	0.5481	0.4721	0.5578	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		898
cd03684		445	cd03684, ClC_3_like, ClC-3-like chloride channel p	1e-154
cd03684		445	cd03684, ClC_3_like, ClC-3-like chloride channel p	1e-141
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	6e-76
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	1e-56
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	2e-53
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	6e-49
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	7e-48
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	3e-45
cd03684		445	cd03684, ClC_3_like, ClC-3-like chloride channel p	7e-40
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	1e-38
cd00400		383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	8e-34
cd01031		402	cd01031, EriC, ClC chloride channel EriC	2e-32
cd00400		383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	2e-31
COG0038		443	COG0038, EriC, Chloride channel protein EriC [Inor	1e-29
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	1e-26
cd01031		402	cd01031, EriC, ClC chloride channel EriC	7e-25
COG0038		443	COG0038, EriC, Chloride channel protein EriC [Inor	3e-24
PRK05277		438	PRK05277, PRK05277, chloride channel protein; Prov	1e-18
PRK01862		574	PRK01862, PRK01862, putative voltage-gated ClC-typ	1e-12
cd01034		390	cd01034, EriC_like, ClC chloride channel family	1e-11
PRK05277		438	PRK05277, PRK05277, chloride channel protein; Prov	2e-11
cd01033		388	cd01033, ClC_like, Putative ClC chloride channel	4e-11
cd01034		390	cd01034, EriC_like, ClC chloride channel family	1e-10
cd01036		416	cd01036, ClC_euk, Chloride channel, ClC	2e-10
PRK01862		574	PRK01862, PRK01862, putative voltage-gated ClC-typ	2e-09
cd01033		388	cd01033, ClC_like, Putative ClC chloride channel	2e-08
cd03683		426	cd03683, ClC_1_like, ClC-1-like chloride channel p	3e-06
cd03682		378	cd03682, ClC_sycA_like, ClC sycA-like chloride cha	4e-06
cd03682		378	cd03682, ClC_sycA_like, ClC sycA-like chloride cha	1e-05
cd03685		466	cd03685, ClC_6_like, ClC-6-like chloride channel p	2e-05
pfam00654		345	pfam00654, Voltage_CLC, Voltage gated chloride cha	4e-05

>gnl\|CDD\|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins	Back alignment and domain information

 Score =  460 bits (1185), Expect = e-154
 Identities = 223/441 (50%), Positives = 280/441 (63%), Gaps = 77/441 (17%)

Query: 186 GSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGS 245
           G +AG+IDI +SW+SDLK G C                                      
Sbjct: 5   GLIAGLIDIIASWLSDLKEGYC-------------------------------------- 26

Query: 246 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVG 305
                      Y+ ++  ALLFA +A  LV++ APYA GSGIPE   + + G  +  ++G
Sbjct: 27  ----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIK-TILSGFIIRGFLG 75

Query: 306 KSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKREILS 365
           K      KS G ++LAV++GLSL K   P   +  C+GNI+S LFPKY RNEAK+REILS
Sbjct: 76  KWT-LLIKSVG-LVLAVASGLSLGK-EGPLVHIATCVGNIISRLFPKYRRNEAKRREILS 132

Query: 366 AAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSV 425
           AAAAAGV+VAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCAL+AAF L+S+NPFG    V
Sbjct: 133 AAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPFGTGRLV 192

Query: 426 LFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVIT 485
           LF VEY++ W +FELIPF+ LG+ GG+    FI+ N+KW R+RK S L +YPV EVL++ 
Sbjct: 193 LFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLLKRYPVLEVLLVA 252

Query: 486 AITTLISFPNPFTRMST-------------------------KAGPGVYTAVWLLMITLV 520
            IT LISFPNP+TR+                            AG GVY A+W L++ L+
Sbjct: 253 LITALISFPNPYTRLDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALI 312

Query: 521 LKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCI 580
           +KL+LT+FTFGIKVP G+F+PS+ +G + GRIVGI ++QLA+ YP    FA   +   CI
Sbjct: 313 IKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCI 372

Query: 581 TPGLYAMVGAAAVLGGVTRMT 601
           TPGLYAMVGAAA LGGVTRMT
Sbjct: 373 TPGLYAMVGAAAFLGGVTRMT 393

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445

>gnl\|CDD\|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

>gnl\|CDD\|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	Back alignment and domain information

>gnl\|CDD\|238504 cd01031, EriC, ClC chloride channel EriC	Back alignment and domain information

>gnl\|CDD\|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	Back alignment and domain information

>gnl\|CDD\|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|238504 cd01031, EriC, ClC chloride channel EriC	Back alignment and domain information

>gnl\|CDD\|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235385 PRK05277, PRK05277, chloride channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|238506 cd01034, EriC_like, ClC chloride channel family	Back alignment and domain information

>gnl\|CDD\|235385 PRK05277, PRK05277, chloride channel protein; Provisional	Back alignment and domain information

>gnl\|CDD\|238505 cd01033, ClC_like, Putative ClC chloride channel	Back alignment and domain information

>gnl\|CDD\|238506 cd01034, EriC_like, ClC chloride channel family	Back alignment and domain information

>gnl\|CDD\|238507 cd01036, ClC_euk, Chloride channel, ClC	Back alignment and domain information

>gnl\|CDD\|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>gnl\|CDD\|238505 cd01033, ClC_like, Putative ClC chloride channel	Back alignment and domain information

>gnl\|CDD\|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins	Back alignment and domain information

>gnl\|CDD\|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		898
KOG0475\|consensus		696		100.0
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	100.0
KOG0474\|consensus		762		100.0
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	100.0
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	100.0
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	100.0
PRK01610		418	putative voltage-gated ClC-type chloride channel C	100.0
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	100.0
PRK01862		574	putative voltage-gated ClC-type chloride channel C	100.0
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	100.0
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	100.0
PRK05277		438	chloride channel protein; Provisional	100.0
cd01034		390	EriC_like ClC chloride channel family. These prote	100.0
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	100.0
KOG0476\|consensus		931		100.0
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	100.0
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	100.0
PRK03655		414	putative ion channel protein; Provisional	100.0
cd03684		445	ClC_3_like ClC-3-like chloride channel proteins. T	100.0
KOG0475\|consensus		696		100.0
PRK01610		418	putative voltage-gated ClC-type chloride channel C	100.0
KOG0474\|consensus		762		100.0
cd03683		426	ClC_1_like ClC-1-like chloride channel proteins. T	100.0
cd01036		416	ClC_euk Chloride channel, ClC. These domains are f	100.0
PRK01862		574	putative voltage-gated ClC-type chloride channel C	100.0
cd01031		402	EriC ClC chloride channel EriC. This domain is fou	100.0
cd03685		466	ClC_6_like ClC-6-like chloride channel proteins. T	100.0
cd01033		388	ClC_like Putative ClC chloride channel. Clc protei	100.0
PRK05277		438	chloride channel protein; Provisional	100.0
PF00654		355	Voltage_CLC: Voltage gated chloride channel Mutati	100.0
cd00400		383	Voltage_gated_ClC CLC voltage-gated chloride chann	100.0
COG0038		443	EriC Chloride channel protein EriC [Inorganic ion	100.0
KOG0476\|consensus		931		100.0
cd03682		378	ClC_sycA_like ClC sycA-like chloride channel prote	100.0
cd01034		390	EriC_like ClC chloride channel family. These prote	100.0
PRK03655		414	putative ion channel protein; Provisional	99.98

>KOG0475\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.7e-71  Score=621.54  Aligned_cols=455  Identities=51%  Similarity=0.897  Sum_probs=420.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcccCCCCCchhhHHHHHhhccccccchhhhhH
Q psy4183         178 HTFYDSEEGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGSNKEGFMAYTLEY  257 (898)
Q Consensus       178 ~~l~g~~vG~~a~l~~~~~~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  257 (898)
                      .+++|..+|..+++.++.-+|  |++.|+|+.++|+++++||     ..|++.+.|+.|..|...+....+....+.++|
T Consensus        58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC-----~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~  130 (696)
T KOG0475|consen   58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCC-----STFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSY  130 (696)
T ss_pred             hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhhe-----eeeecCccchhhhhhHHHhccccCCCCcchHHH
Confidence            578899999999999999999  9999999999999999999     446666679999999998887667777788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183         258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT  337 (898)
Q Consensus       258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~  337 (898)
                      +.|+.|++..+.++..+++.++|+++||||||+|. +++|...++++..|+ ++.|.++. .++++||+|+||| ||+||
T Consensus       131 l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~-ilSGf~~~~~lg~~t-l~iKsVal-~lsvaSGLSlGKE-GP~VH  206 (696)
T KOG0475|consen  131 LIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKT-ILSGFIIRGFLGKWT-LLIKSVAL-CLSVASGLSLGKE-GPSVH  206 (696)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehhhhcCCCcccee-eeccchhhhhhhHHH-Hhhhhhhh-eeeeccccccCCC-CCcee
Confidence            99999999999999999999999999999999999 999998899999999 99999999 9999999999999 99999


Q ss_pred             hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccchhhHHHHHHHHHHHHHHHHHhc
Q psy4183         338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSIN  417 (898)
Q Consensus       338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~~~l~~~~~as~va~~v~~~l~  417 (898)
                      ++.++|+.++++|+++++++.++|++++|++|||+|++||||+||++|++||++.+++.+++|++++|+.+|..+.+.++
T Consensus       207 iA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~  286 (696)
T KOG0475|consen  207 IATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSIN  286 (696)
T ss_pred             eeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccCcc
Q psy4183         418 PFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPNPF  497 (898)
Q Consensus       418 ~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~p~  497 (898)
                      +|+++...+|++.++.+|++.|+++|+++|++||+.|.+|+|.+.++.++|+..+..++|++++++++++++++++++|+
T Consensus       287 pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~~lg~~pv~ev~~vt~iTaiIs~~np~  366 (696)
T KOG0475|consen  287 PFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSSKLGKFPVLEVVFVTLVTAIISLFNPE  366 (696)
T ss_pred             ccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchhhccCCcchhHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999999999999999999999999998778889999999999999999999999


Q ss_pred             ccccc---------CCC--CC-------chhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHH
Q psy4183         498 TRMST---------KAG--PG-------VYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQ  559 (898)
Q Consensus       498 ~~g~g---------~~~--~g-------~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~  559 (898)
                      .+.+.         ...  ++       .+...+.|+...++|+++|++|+|+++|+|+|.||+++||+.|+++|.++++
T Consensus       367 ~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~  446 (696)
T KOG0475|consen  367 TRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQ  446 (696)
T ss_pred             HHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHH
Confidence            98775         111  11       1234778889999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccchhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhc
Q psy4183         560 LAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPI  639 (898)
Q Consensus       560 l~~~~p~~~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl  639 (898)
                      +..+ ||++.|..     .++.|+.||++||||.++|+||+|+|.+++++|+||.    .++++|.|+|++++.++++-+
T Consensus       447 l~~~-~~~~~fg~-----~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~----l~~IlPlm~av~~SkwI~d~~  516 (696)
T KOG0475|consen  447 LAQN-PDFNLFGL-----SCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA----LNYILPLMLAVMISKWIGDGL  516 (696)
T ss_pred             HhcC-CCccccch-----hhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc----ceeHHHHHHHHHHHHHHHhcc
Confidence            9877 99887744     5689999999999999999999999999999999999    999999999999999999988


Q ss_pred             cc-cccccccccccc
Q psy4183         640 GG-VLFSLEEVSYYF  653 (898)
Q Consensus       640 ~g-~lF~lE~l~~~~  653 (898)
                      +. .++.-.+..+.+
T Consensus       517 gk~gIyda~I~~ng~  531 (696)
T KOG0475|consen  517 GKTGIYDAHIELNGY  531 (696)
T ss_pred             ccchHHHHHHHhcCC
Confidence            62 366654444433

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>KOG0474\|consensus	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>KOG0476\|consensus	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

>cd03684 ClC_3_like ClC-3-like chloride channel proteins	Back alignment and domain information

>KOG0475\|consensus	Back alignment and domain information

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>KOG0474\|consensus	Back alignment and domain information

>cd03683 ClC_1_like ClC-1-like chloride channel proteins	Back alignment and domain information

>cd01036 ClC_euk Chloride channel, ClC	Back alignment and domain information

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional	Back alignment and domain information

>cd01031 EriC ClC chloride channel EriC	Back alignment and domain information

>cd03685 ClC_6_like ClC-6-like chloride channel proteins	Back alignment and domain information

>cd01033 ClC_like Putative ClC chloride channel	Back alignment and domain information

>PRK05277 chloride channel protein; Provisional	Back alignment and domain information

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease	Back alignment and domain information

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel	Back alignment and domain information

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0476\|consensus	Back alignment and domain information

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins	Back alignment and domain information

>cd01034 EriC_like ClC chloride channel family	Back alignment and domain information

>PRK03655 putative ion channel protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		898
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	1e-100
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	9e-84
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	4e-20
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	3e-33
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	4e-26
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	4e-32
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	2e-26

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632	Back alignment and structure

 Score =  326 bits (837), Expect = e-100
 Identities = 91/484 (18%), Positives = 171/484 (35%), Gaps = 106/484 (21%)

Query: 186 GSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQWLTWAEVMGS 245
                 +D+    + +L+  +   A                                   
Sbjct: 22  ALFIFAVDLAVHGLEELRMKISRLAGRF-------------------------------- 49

Query: 246 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVG 305
                      Y+ ++   +    L+     + +  A GSG+P+     ++      Y  
Sbjct: 50  ---------AGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQ-----MKSILSGFYDK 95

Query: 306 KSGHSS-----SKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYL--FPKYGRNEA 358
                      +K+ G ++ A+  GL +     P   +   I +    L  F +   + A
Sbjct: 96  MRSALELRVLFAKALG-LICAIGGGLPVGW-EGPNVHIACIIAHQFYRLGVFKELCTDRA 153

Query: 359 KKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINP 418
            + + L+AA A G++ +FGAP+GGVL+S+E ++ ++ ++  W+    AL  A V      
Sbjct: 154 LRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYE--LL 211

Query: 419 FGNEHSVLFYVEY--NKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQY 476
           +       F             + + +  LG + G++  +FIR        R     G  
Sbjct: 212 YTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHYPGTN 271

Query: 477 PVTEVLVITAITTLISFPNPFTRMSTKA-----------GPGVYTAVWLLMITLVLKLVL 525
               V V+    + + +P     +  +A               +     L++  ++K +L
Sbjct: 272 RYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFIL 331

Query: 526 TVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLY 585
              + G+ +P G+F+PS  +G   GR+ G  M+ +                 + I PG Y
Sbjct: 332 VALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVF---------------GNAIVPGSY 376

Query: 586 AMVGAAAVLGGVTR----------MTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAF 635
           A+VGAAA   GVTR          +TG  + +L P           ++S   A  V  AF
Sbjct: 377 AVVGAAAFTAGVTRALSCAVIIFEVTGQ-IRHLVPV----------LISVLLAVIVGNAF 425

Query: 636 GAPI 639
              +
Sbjct: 426 NRSL 429

PyMOL of 3org

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632	Back alignment and structure

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466	Back alignment and structure

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465	Back alignment and structure

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		898
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	100.0
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	100.0
4ene_A		446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	100.0
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0
3nd0_A		466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	100.0
1ots_A		465	Voltage-gated CLC-type chloride channel ERIC; CLC	100.0
4ene_A		446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	100.0
3org_A		632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A	Back alignment and structure

Probab=100.00  E-value=8.8e-60  Score=544.15  Aligned_cols=356  Identities=21%  Similarity=0.266  Sum_probs=304.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchhh
Q psy4183         258 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFT  337 (898)
Q Consensus       258 ~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v~  337 (898)
                      +.+++.+..++.+++++++|+.|+++||||||+++ .++|.+  +..++|+ ++.|++++ ++++++|+|+||| ||++|
T Consensus        76 ~l~~~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~-~l~g~~--~~~~~~~-~~~k~~~~-~ltig~G~S~GrE-GP~vq  149 (466)
T 3nd0_A           76 LVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEG-HLEGKL--PLVWQRV-LPIKLVGG-FLSLGAGMLAGFE-GPTIQ  149 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCGGGSBCSHHHHHH-HTTSSS--CCCHHHH-HHHHHHHH-HHHHHTTCSCCTH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcCCCCHHHHHH-HHcCCC--CCchHHH-HHHHHHHH-HHHHhcCCCCCCc-chHHH
Confidence            34455566777788899999999999999999999 777643  3334455 99999999 9999999999999 99999


Q ss_pred             hhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeecccc--chhhHHHHHHHHHHHHHHHHH
Q psy4183         338 LRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYF--PLKTLWRSFFCALIAAFVLRS  415 (898)
Q Consensus       338 iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~--~~~~l~~~~~as~va~~v~~~  415 (898)
                      +|+++|++++|++|   ++++|||++++||+|||+||+||||++|++|++||+.+++  +.+.++++++||++|+++++.
T Consensus       150 iGa~ig~~l~~~~~---~~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~  226 (466)
T 3nd0_A          150 MGGSIGQMTGGWFK---ATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRM  226 (466)
T ss_dssp             HHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987   7899999999999999999999999999999999999888  446788999999999999998


Q ss_pred             hccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhhheeccC
Q psy4183         416 INPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQYPVTEVLVITAITTLISFPN  495 (898)
Q Consensus       416 l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~~p~~~~~l~glv~gll~~~~  495 (898)
                      +  +|+++.  |..+....++..++++++++|+++|++|.+|++.+.+.++++++.+ +.++++++.+++++++++.++.
T Consensus       227 ~--~g~~~~--f~~~~~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~g~l~~~~  301 (466)
T 3nd0_A          227 I--RGQSAI--ISLTEFKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP-PLATKWKGFLLGSIIGILSLFP  301 (466)
T ss_dssp             H--TCSSCS--SCCTTCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHTTSS
T ss_pred             H--cCCCCc--eecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHHHHH
Confidence            8  677664  4444334456789999999999999999999999999888776531 1235677888999999999999


Q ss_pred             cccccccC-----CCCCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCccchh
Q psy4183         496 PFTRMSTK-----AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIF  570 (898)
Q Consensus       496 p~~~g~g~-----~~~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~~~~  570 (898)
                      |+..+++.     ..++. .....++.+++.|+++|++|+|+|.|||+|+|++++||++|+++|.+++.+.   |+    
T Consensus       302 p~~~G~G~~~i~~~~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~---p~----  373 (466)
T 3nd0_A          302 LPLTDGGDNAVLWAFNSQ-SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLF---PS----  373 (466)
T ss_dssp             SSCSSSSHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHC---TT----
T ss_pred             HHHcCCcHHHHHHHHcCC-ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhC---Cc----
Confidence            99887761     11222 2345677889999999999999999999999999999999999999987653   32    


Q ss_pred             ccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhcc-cccccc
Q psy4183         571 AGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIG-GVLFSL  646 (898)
Q Consensus       571 ~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~-g~lF~l  646 (898)
                             ...+|+.|+++||+|++++++|+|+|++++++|+||+    .+.++|.++++.+|+.+++-++ ..+|+.
T Consensus       374 -------~~~~~~~~a~vGmaa~~a~v~~aPlt~ivlv~Eltg~----~~~~lpl~ia~~iA~~v~~~~~~~~iY~~  439 (466)
T 3nd0_A          374 -------QIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDN----YFVILPLLVTCLVASVVAEALGGKPIYTV  439 (466)
T ss_dssp             -------TCSSTHHHHHHTTSHHHHHHHSCHHHHHHHHHHTTCC----CTTHHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred             -------cccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC----hHHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence                   3578999999999999999999999999999999997    7899999999999999999885 567764

PyMOL of 3nd0

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...	Back alignment and structure

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...	Back alignment and structure

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}	Back alignment and structure

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A	Back alignment and structure

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...	Back alignment and structure

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...	Back alignment and structure

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		898
d1otsa_		444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	2e-26
d1otsa_		444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	3e-18

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 2e-26
 Identities = 83/365 (22%), Positives = 136/365 (37%), Gaps = 30/365 (8%)

Query: 243 MGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVV 302
           MG+       Y L        + + A     LVR +AP A GSGIPE     +EG+    
Sbjct: 49  MGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE-----IEGALEDQ 103

Query: 303 YVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWFTLRPCIGNILSYLFPKYGRNEAKKRE 362
              +            +  +  G+ L +   P   +   IG ++  +F    + +  +  
Sbjct: 104 RPVRWWRVLPVKFFGGLGTLGGGMVLGREG-PTVQIGGNIGRMVLDIFRL--KGDEARHT 160

Query: 363 ILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNE 422
           +L+  AAAG++ AF AP+ G+LF +EE+   F  +    S     I   +   +    N 
Sbjct: 161 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQF--RYTLISIKAVFIGVIMSTIMYRIFNH 218

Query: 423 HSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQY--PVTE 480
              L  V          L  ++ LG+I GI   IF +  L           G     V  
Sbjct: 219 EVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLM 278

Query: 481 VLVITAITTLISFPNPFTRMSTKAGPGVYT----AVWLLMITLVLKLVLTVFTFGIKVPC 536
              I  +  L+ F  P T         + T    ++ +L+   V +++ T+  F    P 
Sbjct: 279 GGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPG 338

Query: 537 GLFIPSLCLGGIVGRIVGIGMQQLAFHYPHIWIFAGECSTNDCITPGLYAMVGAAAVLGG 596
           G+F P L LG ++G   G+   +L   Y               +  G +A+ G  A+L  
Sbjct: 339 GIFAPMLALGTVLGTAFGMVAVELFPQYH--------------LEAGTFAIAGMGALLAA 384

Query: 597 VTRMT 601
             R  
Sbjct: 385 SIRAP 389

PyMOL of d1otsa_

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		898
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	100.0
d1otsa_		444	Clc chloride channel {Escherichia coli [TaxId: 562	100.0

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-53  Score=484.49  Aligned_cols=358  Identities=24%  Similarity=0.307  Sum_probs=300.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhhhhhcCCccccccccccccchhhhhhHHHHHhcCccccCCCCchh
Q psy4183         257 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEQNYSDVEGSSLVVYVGKSGHSSSKSCGRIMLAVSAGLSLRKGRTPWF  336 (898)
Q Consensus       257 ~~~~il~~~~~~~l~~~L~~~~~p~a~GsGIp~v~~~~l~G~~~~~~l~~~~~~~~K~l~~~ilav~sG~SlGrE~GP~v  336 (898)
                      +..+.+....++.+++++++++.|+++||||||+++ .++|.  ++.+++++ .+.|++++ ++++++|+|+||| ||++
T Consensus        63 ~~~~~~~~~~~~~~~~~l~~~~~p~~~GsGipev~~-~l~~~--~~~~~~r~-~~~k~~~~-~~sl~~G~s~G~E-GP~v  136 (444)
T d1otsa_          63 LTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG-ALEDQ--RPVRWWRV-LPVKFFGG-LGTLGGGMVLGRE-GPTV  136 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHHH-HHTTC--SCCCHHHH-HHHHHHHH-HHHHHTTCSCBSH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCccCCCCHHHHHH-HHhCC--CCCccHHH-HHHHHHHH-HHHHhcCCCcccc-ccHH
Confidence            344556677888889999999999999999999999 77774  35566777 99999999 9999999999999 9999


Q ss_pred             hhhhhhhhhhccccccCCCCHHHHHHHHHHHHhhhhhhhccCccccceeEEeeeccccch--hhHHHHHHHHHHHHHHHH
Q psy4183         337 TLRPCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPL--KTLWRSFFCALIAAFVLR  414 (898)
Q Consensus       337 ~iGa~ig~~l~~~f~~~~~~~~~~r~lvaaGaAAGlaAaF~APLaGvlFalE~l~~~~~~--~~l~~~~~as~va~~v~~  414 (898)
                      |+|++++++++|++|.  .+++++|++++||+|||++|+||||++|++|++||+.++++.  +.+++++++++++.++.+
T Consensus       137 ~iga~i~~~l~~~~~~--~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~  214 (444)
T d1otsa_         137 QIGGNIGRMVLDIFRL--KGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYR  214 (444)
T ss_dssp             HHHHHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh--hhHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhhee
Confidence            9999999999999872  467788999999999999999999999999999999987654  568999999999999988


Q ss_pred             HhccCCCcceeeeeecccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--chhHHHHHHHHHhhhee
Q psy4183         415 SINPFGNEHSVLFYVEYNKPWIFFELIPFVGLGVIGGIIAYIFIRLNLKWCRYRKMSRLGQ--YPVTEVLVITAITTLIS  492 (898)
Q Consensus       415 ~l~~~g~~~~~~f~~~~~~~~~~~~l~~~lllGil~Gl~g~lF~~l~~~~~~~~~~~~~~~--~p~~~~~l~glv~gll~  492 (898)
                      ..  .++.+  .++.....+++..++++++++|+++|++|.+|++.+.+.++++++.+.+.  ++.+...+.+.+++++.
T Consensus       215 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~  290 (444)
T d1otsa_         215 IF--NHEVA--LIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLG  290 (444)
T ss_dssp             HH--SCSCC--SSCCCCCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ec--cCccc--ccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHh
Confidence            76  44444  34444445566788999999999999999999999998888765543222  23445566677778888


Q ss_pred             ccCcccccccCCC-----CCchhHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhhhHHHHHHHHHHHHhhhhcCcc
Q psy4183         493 FPNPFTRMSTKAG-----PGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGLFIPSLCLGGIVGRIVGIGMQQLAFHYPHI  567 (898)
Q Consensus       493 ~~~p~~~g~g~~~-----~g~~~~~~~L~~~l~~K~l~t~ltlgsG~pGG~f~Psl~iGA~lG~l~G~l~~~l~~~~p~~  567 (898)
                      ++.|+..+++...     ++. .....++..++.|+++|.+|+++|.|||.|+|++++||++|++++.+++.+.   |  
T Consensus       291 ~~~p~~~g~G~~~~~~~~~~~-~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~---~--  364 (444)
T d1otsa_         291 FVAPATSGGGFNLIPIATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELF---P--  364 (444)
T ss_dssp             HHCGGGSSCSTTHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHC---G--
T ss_pred             ccCcccCCCchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhC---C--
Confidence            8889887776211     111 2344567788999999999999999999999999999999999999987753   2  


Q ss_pred             chhccccCCCCCCChhHHHHHHHHHHHhhhhccchhhhhccccccccchhhHHHHHHHHHHHHHHHHHhhhccc-cccc
Q psy4183         568 WIFAGECSTNDCITPGLYAMVGAAAVLGGVTRMTGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGG-VLFS  645 (898)
Q Consensus       568 ~~~~~~~~~g~~i~p~~~alvGmaA~lag~~raPltaivl~~Eltg~~~~~~~~li~~~~AagiAa~f~apl~g-~lF~  645 (898)
                               +..++|+.|+++||+|++++++|+|+|++++++|+||+    .+.++|+++++.+|+.+++.+.. ++|.
T Consensus       365 ---------~~~~~~~~~alvGmaa~~a~~~~~Plta~vl~~Eltg~----~~~~~p~~ia~~~a~~v~~~~~~~siY~  430 (444)
T d1otsa_         365 ---------QYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDN----YQLILPMIITGLGATLLAQFTGGKPLYS  430 (444)
T ss_dssp             ---------GGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ---------cccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence                     23578999999999999999999999999999999997    89999999999999999999875 5565

PyMOL of d1otsa_

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}	Back information, alignment and structure