Psyllid ID: psy4231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRSWGRGNVLGGS
Secondary Structure (PSIPRED)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccEcccc
Coil and Loop (DISEMBL)
msdlsdwfnsqpffTRWWLALTIAFTIGgrfgllrgsdlILIYDLFVNnfhiwrpitalfyyplspangfhFLMNCYFLYSYSGllekglfdgkpaDYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLtfkypqemggpallstpafmykwfpnerttvhgfgqvprrpaeptsaggrswgrgnvlggs
Flexible Loop (DISEMBL)
MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQvprrpaeptsaggrswgrgnvlggs
Low Complexity Region (SEG)
MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRSWGRGNVLGGS
Disordered region (IsUnstruct)
*****DWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGF***************************
Disordered Region (DISOPRED)
*SDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNE***************************GNVL***
Disordered Region (DISEMBL)
MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQV************RSWGRGNVLGGS
Disordered Region (DISPRO)
*SDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNE**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRSWGRGNVLGGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9BUN8	251	Derlin-1 OS=Homo sapiens	yes	N/A	0.991	0.976	0.530	1e-69
Q5R9W3	251	Derlin-1 OS=Pongo abelii	yes	N/A	0.991	0.976	0.530	1e-69
Q71SS4	251	Derlin-1 OS=Bos taurus GN	yes	N/A	0.991	0.976	0.526	3e-69
Q99J56	251	Derlin-1 OS=Mus musculus	yes	N/A	0.991	0.976	0.518	2e-68
Q93561	245	Derlin-1 OS=Caenorhabditi	yes	N/A	0.943	0.951	0.477	2e-58
Q9VQ57	245	Derlin-1 OS=Drosophila me	yes	N/A	0.979	0.987	0.415	1e-49
Q5RC74	239	Derlin-2 OS=Pongo abelii	no	N/A	0.902	0.933	0.331	7e-27
Q9GZP9	239	Derlin-2 OS=Homo sapiens	no	N/A	0.902	0.933	0.331	7e-27
Q8BNI4	239	Derlin-2 OS=Mus musculus	no	N/A	0.773	0.799	0.359	9e-27
Q54IC9	242	Probable derlin-1 homolog	yes	N/A	0.971	0.991	0.311	4e-25

>sp|Q9BUN8|DERL1_HUMAN Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 169/249 (67%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ DWF S P  TR+W A T+A  + G+ GL+  + L L  + F+  F IWRPITA F
Sbjct: 1   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct: 61  YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
           HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct: 181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query: 237 SWGRGNVLG 245
           +WG+G  LG
Sbjct: 241 NWGQGFRLG 249

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In case of infection by cytomegaloviruses, it plays a central role in the export from the ER and subsequent degradation of MHC class I heavy chains via its interaction with US11 viral protein, which recognizes and associates with MHC class I heavy chains. Also participates in the degradation process of misfolded cytomegalovirus US2 protein.
Homo sapiens (taxid: 9606)

>sp|Q5R9W3|DERL1_PONAB Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 169/249 (67%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ DWF S P  TR+W A T+A  + G+ GL+  + L L  + F+  F IWRPITA F
Sbjct: 1   MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct: 61  YFPVGPGTGFLYLVNLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
           HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct: 181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query: 237 SWGRGNVLG 245
           +WG+G  LG
Sbjct: 241 NWGQGFRLG 249

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q71SS4|DERL1_BOVIN Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/249 (52%), Positives = 168/249 (67%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ DWF S P  TR+W A T+A  + G+ GL+  +   L  + F+  F IWRPITA F
Sbjct: 1   MSDIGDWFRSIPTITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQIWRPITATF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct: 61  YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
           HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct: 181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query: 237 SWGRGNVLG 245
           +WG+G  LG
Sbjct: 241 NWGQGFRLG 249

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Bos taurus (taxid: 9913)

>sp|Q99J56|DERL1_MOUSE Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/249 (51%), Positives = 167/249 (67%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ DWF S P  TR+W A T+A  + G+ G++  +   L  + F+  F IWRP TA F
Sbjct: 1   MSDIGDWFRSIPAITRYWFAATVAVPLIGKLGIISPAYFFLWPEAFLYRFQIWRPFTATF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct: 61  YFPVGPGTGFLYLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct: 121 LMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
           HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct: 181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query: 237 SWGRGNVLG 245
           +WG+G  LG
Sbjct: 241 NWGQGFRLG 249

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q93561|DERL1_CAEEL Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 150/241 (62%), Gaps = 8/241 (3%)

Query: 3   DLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYY 62
           DL ++    P  TR+W   +    + GRFG +    + L +DL VN F  WRP+TAL YY
Sbjct: 2   DLENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYY 61

Query: 63  PLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLM 122
           P++P  GFH+LM CYFLY+YS  LE   + G+ ADY FML+FNW  C  + +  DIYFL+
Sbjct: 62  PVTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLL 121

Query: 123 NPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHL 182
            PMV+SV+YVWCQ+NKD  V+F F  +F A YLPWVL+  N +L GGG  EL+GIL+GH 
Sbjct: 122 EPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHA 181

Query: 183 YFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFG-------QVPRRPAEPTSAGG 235
           YFF+  KYP E  G  L+STP F+++  P+E   +HG         Q PR    P   G 
Sbjct: 182 YFFVALKYPDEY-GVDLISTPEFLHRLIPDEDGGIHGQDGNIRGARQQPRGHQWPGGVGA 240

Query: 236 R 236
           R
Sbjct: 241 R 241

Specifically required for the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins. Participates in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VQ57|DERL1_DROME Derlin-1 OS=Drosophila melanogaster GN=Der-1 PE=2 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 145/243 (59%), Gaps = 1/243 (0%)

Query: 3   DLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYY 62
           D   W+ S P FTR+WL  T+  ++  RF ++    L L      +   +WR +T+LF +
Sbjct: 2   DAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVF 61

Query: 63  PLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLM 122
           P+S    FHFL+NC+F+  YS  LEK  +   PADY ++L+ + V   +  ++ ++YFLM
Sbjct: 62  PISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLANIGGMIFNVYFLM 121

Query: 123 NPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHL 182
           + +VL++ Y+WCQLNKD  V+F F T+FKAMYLPWVL A   I F   +  L+GI +GH+
Sbjct: 122 DTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFEFI-FHFSLASLVGIFVGHV 180

Query: 183 YFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRSWGRGN 242
           Y+F  F+Y Q++GG  LL TP F+ +  P+      GFG  P   A P  A    WGRG 
Sbjct: 181 YYFFKFQYSQDLGGTPLLETPQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGM 240

Query: 243 VLG 245
            LG
Sbjct: 241 TLG 243

May be involved in the degradation process of some misfolded endoplasmic reticulum (ER) luminal proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 12  PFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITA-LFYYPLSPANGF 70
           P  +R +    +  T   +  L+    L    +L   +F IWR IT  LF+ P+    GF
Sbjct: 14  PPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPV----GF 69

Query: 71  HFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVM 130
           +FL N  FLY Y  +LE+G F G+ AD+ FM LF      +  L   + FL     + ++
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLV 129

Query: 131 YVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKY 190
           YVW + N    + F     F+A +LPWVL   +L+L    +++L+GI +GH+YFFL   +
Sbjct: 130 YVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVF 189

Query: 191 PQEMGGPALLSTPAFMYKWF--PNERTTVHGFGQVPRRPAEPTSAGGRSWGRGNVLGG 246
           P + GG  +L TP+ +   F  P+E    +        P      GG +WG G  LGG
Sbjct: 190 PNQPGGIRILKTPSILKAIFDTPDEDPNYN--------PLPEERPGGFAWGEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 12  PFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITA-LFYYPLSPANGF 70
           P  +R +    +  T   +  L+    L    +L   +F IWR IT  LF+ P+    GF
Sbjct: 14  PPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPV----GF 69

Query: 71  HFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVM 130
           +FL N  FLY Y  +LE+G F G+ AD+ FM LF      +  L   + FL     + ++
Sbjct: 70  NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLV 129

Query: 131 YVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTFKY 190
           YVW + N    + F     F+A +LPWVL   +L+L    +++L+GI +GH+YFFL   +
Sbjct: 130 YVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVF 189

Query: 191 PQEMGGPALLSTPAFMYKWF--PNERTTVHGFGQVPRRPAEPTSAGGRSWGRGNVLGG 246
           P + GG  +L TP+ +   F  P+E    +        P      GG +WG G  LGG
Sbjct: 190 PNQPGGIRILKTPSILKAIFDTPDEDPNYN--------PLPEERPGGFAWGEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In contrast to DERL1, it is not involved in the degradation of MHC class I heavy chains following infection by cytomegaloviruses. May play a role in cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2

 Score =  120 bits (301), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 44  DLFVNNFHIWRPITA-LFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFML 102
           +L   +F IWR IT  LF+ P+    GF+FL N  FLY Y  +LE+G F G+ AD+ FM 
Sbjct: 46  ELIFKHFQIWRLITNFLFFGPV----GFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMF 101

Query: 103 LFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFAC 162
           LF      +  L   + FL     + ++YVW + N    + F     F+A +LPWVL   
Sbjct: 102 LFGGFLMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGF 161

Query: 163 NLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWF--PNERTTVHGF 220
           +L+L    +++L+GI +GH+YFFL   +P + GG  +L TP+ +   F  P+E    +  
Sbjct: 162 SLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIFDTPDEDPNYN-- 219

Query: 221 GQVPRRPAEPTSAGGRSWGRGNVLGG 246
                 P      GG +WG G  LGG
Sbjct: 220 ------PLPEERPGGFAWGEGQRLGG 239

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q54IC9|DERL1_DICDI Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 7/247 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           M  + +WFNS P  +R+  A+ +   +     L+  + L L +     +FH+WR ITA  
Sbjct: 1   MDGVKEWFNSIPPVSRYMFAIFLGIPVLAAMHLISFNYLYLDFTFTFKHFHLWRLITA-- 58

Query: 61  YYP-LSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIY 119
             P +  + G  FL N  F Y Y+  LE   + GK  DY F ++F  +C ++  L+ + Y
Sbjct: 59  --PCIISSLGPMFLFNLIFFYQYTTRLESLNYAGKSDDYLFCIIFISICNIIFGLIFEYY 116

Query: 120 FLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGG-GVMELIGIL 178
           FL    ++S++Y++ ++N      F     FK +YLPWV    + +  G     + + I+
Sbjct: 117 FLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIV 176

Query: 179 IGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAGGRSW 238
            GH++F+LT  YP+  G PAL+ TP F+   F       +   + PR    P   GG +W
Sbjct: 177 SGHIFFYLTDIYPRANGVPALIKTPKFITNIFNKGDRNPNNVRRDPRT-GRPIQEGGYNW 235

Query: 239 GRGNVLG 245
           G+G+ LG
Sbjct: 236 GQGHALG 242

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
307187713	253	Derlin-1 [Camponotus floridanus]	0.991	0.968	0.634	2e-87
321479370	254	hypothetical protein DAPPUDRAFT_299872 [	1.0	0.972	0.640	5e-87
350410212	250	PREDICTED: derlin-1-like [Bombus impatie	0.991	0.98	0.598	7e-84
110765104	250	PREDICTED: derlin-1-like [Apis mellifera	0.991	0.98	0.598	9e-84
332023959	252	Derlin-1 [Acromyrmex echinatior]	0.991	0.972	0.617	1e-83
340719836	250	PREDICTED: derlin-1-like [Bombus terrest	0.991	0.98	0.594	1e-83
380023822	250	PREDICTED: LOW QUALITY PROTEIN: derlin-1	0.991	0.98	0.594	9e-83
357620436	248	Der1-like domain family member 1 [Danaus	0.987	0.983	0.625	1e-82
114051465	250	Der1-like domain family member 1 [Bombyx	0.995	0.984	0.621	1e-82
389614577	251	conserved hypothetical protein [Papilio	0.995	0.980	0.611	4e-82

>gi|307187713|gb|EFN72685.1| Derlin-1 [Camponotus floridanus]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 194/252 (76%), Gaps = 7/252 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+++WF++ P FTR+WL  TI FT+ GRFG L    LIL  D F+NNF IWR +T++F
Sbjct: 1   MSDVTNWFSTLPIFTRYWLLCTIVFTLLGRFGFLSPHSLILWPDRFINNFEIWRAVTSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           YYPLSPA GFHFL+NCYFLY+YS  LE+G +DGKPADY F+LLFNW+CCV+I L+ D   
Sbjct: 61  YYPLSPATGFHFLINCYFLYNYSLRLERGEYDGKPADYCFLLLFNWICCVIIGLIGDFSL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKDA V F F TQFKAMYLPWVLF  NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSVLYVWCQLNKDAIVNFWFGTQFKAMYLPWVLFGFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP-RRPAEPTSA------ 233
           HLY FL FKYPQE+GGP LL+TP  +  +FP +R+ +  FG  P  RPAE  +A      
Sbjct: 181 HLYVFLKFKYPQELGGPELLNTPKILESYFPPQRSGIRSFGSAPTNRPAEGQNAQGRNIF 240

Query: 234 GGRSWGRGNVLG 245
           GG +WGRG+VLG
Sbjct: 241 GGHNWGRGHVLG 252

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479370|gb|EFX90326.1| hypothetical protein DAPPUDRAFT_299872 [Daphnia pulex]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/253 (64%), Positives = 191/253 (75%), Gaps = 6/253 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MS+LS WF + P FTR W  LTIA ++ GRF +L    LIL Y     +FHIWRP +ALF
Sbjct: 1   MSELSSWFKNLPIFTRHWFGLTIALSLVGRFAILSPKYLILDYHSIFESFHIWRPASALF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           YYP++P  GFHFL+N YFLY+YS  LE GLF+G+PADY FMLLFNW+CCV+I LLAD  +
Sbjct: 61  YYPITPKTGFHFLINLYFLYNYSLQLETGLFNGRPADYFFMLLFNWICCVIIGLLADFPY 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKD  V F F TQFKAMYLPWVL   NLI+ GGGVMEL+GI++G
Sbjct: 121 LMDPMVLSVLYVWCQLNKDTIVNFWFGTQFKAMYLPWVLLGFNLIIAGGGVMELVGIVVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAE----PTSAGGR 236
           HLYFFLT +YPQE GGP LL+TP F+YK+FPN+R+ V GFG  P+  AE       AG R
Sbjct: 181 HLYFFLTMQYPQEFGGPLLLTTPQFLYKYFPNQRSGVQGFGVAPQPRAEFRAAAQDAGPR 240

Query: 237 --SWGRGNVLGGS 247
              WGRGNVLGG 
Sbjct: 241 RYDWGRGNVLGGQ 253

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410212|ref|XP_003488982.1| PREDICTED: derlin-1-like [Bombus impatiens]

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 149/249 (59%), Positives = 191/249 (76%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ +W NS P FTR+WL  TI  T+ GRFGL+  + LILI D F+NNF IWR  T++F
Sbjct: 1   MSDVRNWINSLPIFTRYWLLCTIVCTLVGRFGLINPTSLILINDRFINNFEIWRAATSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           +YPL+  +GFHFL+NCYFLY+YS  LE+G +DG+PADY F+LLFNW+CCV+I ++ +++ 
Sbjct: 61  FYPLNRGSGFHFLINCYFLYNYSLRLERGEYDGRPADYCFLLLFNWICCVIIGVIGELHI 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLS++YVWCQLNKDA V F F TQFKA+YLPWVLFA NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSILYVWCQLNKDAIVNFWFGTQFKAVYLPWVLFAFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSA----GGR 236
           HLY FL FKYPQE+GGP LL+TP  +  +FP++R  +  FG  P +  +   A    GG 
Sbjct: 181 HLYVFLKFKYPQELGGPELLNTPKILESYFPSQRGNIRWFGAAPIQRTQTQQARNTFGGH 240

Query: 237 SWGRGNVLG 245
           +WGRG VLG
Sbjct: 241 NWGRGYVLG 249

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110765104|ref|XP_001122972.1| PREDICTED: derlin-1-like [Apis mellifera]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 149/249 (59%), Positives = 190/249 (76%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ +WFNS P FTR+WL  T+  T+ GRFGL+  + LILI D F+NNF IWR  T++F
Sbjct: 1   MSDVRNWFNSLPIFTRYWLLCTVVCTLVGRFGLINPTSLILINDRFINNFEIWRAATSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           +YPL+P+ GFHFL+NCYFLY+YS  LE+G +DG+PADY F+LLFNW+CCV+I L+ + +F
Sbjct: 61  FYPLNPSTGFHFLINCYFLYNYSLRLERGEYDGRPADYCFLLLFNWICCVIIGLIGEFHF 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLS++YVWCQLNKDA V F F T FKA+Y PWVLFA NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSILYVWCQLNKDATVNFWFGTSFKAIYFPWVLFAFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSA----GGR 236
           HLY FL FKYPQE+GG  LL+TP  +  +FP +R  +  FG VP + ++        GG 
Sbjct: 181 HLYVFLKFKYPQELGGLELLNTPKILESYFPPQRGNIRWFGSVPIQRSQTQHTRNTFGGH 240

Query: 237 SWGRGNVLG 245
           +WGRG VLG
Sbjct: 241 NWGRGYVLG 249

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023959|gb|EGI64177.1| Derlin-1 [Acromyrmex echinatior]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/251 (61%), Positives = 188/251 (74%), Gaps = 6/251 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ DWFNS P FTR+WL  T   T+ GRFG L    L+L  D F++NF IWR +T++F
Sbjct: 1   MSDVRDWFNSLPIFTRYWLLCTAVLTLLGRFGFLSPLSLVLWPDRFLHNFEIWRAVTSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           YYPL+ + GFHFL+NCYFLY+YS  LE+G +DGKPADY F+LLFNW+CCV+I LL D   
Sbjct: 61  YYPLNQSTGFHFLINCYFLYNYSLRLERGEYDGKPADYCFLLLFNWICCVIIGLLGDFSL 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKDA V F F TQFKAMYLPWVLF  NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSVLYVWCQLNKDAIVNFWFGTQFKAMYLPWVLFGFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPR-RPAEPTSA-----G 234
           HLY FL FKYPQE+GGP LL+TP  +  +FP +R+ +  FG VP  RP    +      G
Sbjct: 181 HLYVFLKFKYPQELGGPELLNTPGLLESYFPPQRSGIRSFGNVPAPRPTGEQNQGRNIFG 240

Query: 235 GRSWGRGNVLG 245
           G +WGRG+VLG
Sbjct: 241 GHNWGRGHVLG 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719836|ref|XP_003398351.1| PREDICTED: derlin-1-like [Bombus terrestris]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 191/249 (76%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ +W NS P FTR+WL  TI  T+ GRFGL+  + LILI + F+NNF IWR  T++F
Sbjct: 1   MSDVRNWINSLPIFTRYWLLCTIVCTLVGRFGLINPTSLILINERFINNFEIWRAATSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           +YPL+  +GFHFL+NCYFLY+YS  LE+G +DG+PADY F+LLFNW+CCV+I ++ +++ 
Sbjct: 61  FYPLNRGSGFHFLINCYFLYNYSLRLERGEYDGRPADYCFLLLFNWICCVIIGVIGELHI 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLS++YVWCQLNKDA V F F TQFKA+YLPWVLFA NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSILYVWCQLNKDAIVNFWFGTQFKAVYLPWVLFAFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSA----GGR 236
           HLY FL FKYPQE+GGP LL+TP  +  +FP++R  +  FG  P +  +   A    GG 
Sbjct: 181 HLYVFLKFKYPQELGGPELLNTPKILESYFPSQRGNIRWFGAAPTQRTQTQQARNTFGGH 240

Query: 237 SWGRGNVLG 245
           +WGRG VLG
Sbjct: 241 NWGRGYVLG 249

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023822|ref|XP_003695710.1| PREDICTED: LOW QUALITY PROTEIN: derlin-1-like [Apis florea]

 Score =  312 bits (799), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 189/249 (75%), Gaps = 4/249 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MSD+ +WFNS P FTR+WL  T+  T+ GRFGL+  + LILI D F+NNF IWR  T++F
Sbjct: 1   MSDVRNWFNSLPIFTRYWLLCTVVCTLVGRFGLINPTSLILINDRFINNFEIWRAATSVF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           +YPL+P+ GFHFL+NCYFLY+YS  LE+G +DG+PADY F+LLFNW+CCV+I L+ + +F
Sbjct: 61  FYPLNPSTGFHFLINCYFLYNYSLRLERGEYDGRPADYCFLLLFNWICCVIIGLIGEFHF 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLS++YVWCQLN DA V F F T FKA+Y PWVLFA NLI+ GGG+MEL GIL+G
Sbjct: 121 LMDPMVLSILYVWCQLNXDATVNFWFGTSFKAIYFPWVLFAFNLIISGGGMMELFGILVG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSA----GGR 236
           HLY FL FKYPQE+GG  LL+TP  +  +FP +R  +  FG VP + ++        GG 
Sbjct: 181 HLYVFLKFKYPQELGGFELLNTPKILESYFPPQRGNIRWFGSVPIQRSQTQHTRNTFGGH 240

Query: 237 SWGRGNVLG 245
           +WGRG VLG
Sbjct: 241 NWGRGYVLG 249

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620436|gb|EHJ72630.1| Der1-like domain family member 1 [Danaus plexippus]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/251 (62%), Positives = 192/251 (76%), Gaps = 7/251 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MS+ +DWFNS PFFTR+WLA TI  ++ GRFG++     IL Y  F++ F IWRPITALF
Sbjct: 1   MSEFNDWFNSVPFFTRYWLAFTIGLSLIGRFGVISYYYFILDYYPFIHQFQIWRPITALF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           YYP+ P+ GFHFL+NCYFLY+YS  LE  +F GKPADY +MLLFNW+CCV+I LL ++  
Sbjct: 61  YYPIGPSTGFHFLINCYFLYNYSQRLELSMFAGKPADYFYMLLFNWLCCVIIGLLVNLPI 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKD  V+F F T+FKAMYLPWVL A NL++ GGG MEL+GILIG
Sbjct: 121 LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVISGGGAMELLGILIG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPAEPTSAG----GR 236
           HL FFL FKYPQE GGPALL+ PAF+ + FP+ R  V GFG  P+  + PT+ G    G 
Sbjct: 181 HLSFFLLFKYPQEFGGPALLTPPAFLKELFPDTR-YVGGFGTAPQ--SRPTARGGNMFGH 237

Query: 237 SWGRGNVLGGS 247
           +WGRG  LGG+
Sbjct: 238 NWGRGQTLGGN 248

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051465|ref|NP_001040297.1| Der1-like domain family member 1 [Bombyx mori] gi|87248099|gb|ABD36102.1| Der1-like domain family member 1 [Bombyx mori]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 156/251 (62%), Positives = 188/251 (74%), Gaps = 5/251 (1%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MS+  DW+N  PFFTR+W+  TI  ++ G+FGL+     IL +  F N F IWRP+TALF
Sbjct: 1   MSEFRDWYNGVPFFTRYWMTFTIVLSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           YYP++P  GFHFL+NCYFLY+YS  LE G+F GKPADY +MLLFNWVCCV+I LL  +  
Sbjct: 61  YYPINPGTGFHFLINCYFLYNYSQRLETGMFAGKPADYFYMLLFNWVCCVIIGLLVKLPV 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKD  V+F F T+FKAMYLPWVL A NL++ GGG+MEL+GILIG
Sbjct: 121 LMDPMVLSVLYVWCQLNKDVIVSFGFGTRFKAMYLPWVLLAFNLVISGGGIMELLGILIG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP--RRPAEP--TSAGGR 236
           HL FFL FKYPQE GGPALL+ PAF+ + FP+ R  V GFG  P  R P  P  T  GG 
Sbjct: 181 HLAFFLLFKYPQEFGGPALLTPPAFLKQLFPDTR-YVGGFGTAPQARVPTRPGNTVFGGH 239

Query: 237 SWGRGNVLGGS 247
           +WGRG  LGG+
Sbjct: 240 NWGRGQTLGGN 250

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614577|dbj|BAM20329.1| conserved hypothetical protein [Papilio polytes]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/252 (61%), Positives = 191/252 (75%), Gaps = 6/252 (2%)

Query: 1   MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
           MS+  DW+ S PFFTR+WL+ TI  ++ GRFG++   +L+L +  F+N F IWRP+TALF
Sbjct: 1   MSEFKDWYYSVPFFTRYWLSFTIILSLVGRFGIINYYNLVLDFYPFINQFQIWRPLTALF 60

Query: 61  YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
           +YP+ P  GFHFL+NCYFLY+YS  LE G+F GKPADY +MLLFNW CCVVI +L ++  
Sbjct: 61  FYPIGPGTGFHFLINCYFLYNYSQRLETGIFAGKPADYFYMLLFNWACCVVIGILVNLPI 120

Query: 121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
           LM+PMVLSV+YVWCQLNKD  V+F F T+FKAMYLPWVL A NL+L GGG+MEL+GILIG
Sbjct: 121 LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPWVLLAFNLVLSGGGMMELLGILIG 180

Query: 181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFG-----QVPRRPAEPTSAGG 235
           H+ FFL FKYPQE GGPALL+ PAF+ + FP+ R  V GFG     +VP RPA     G 
Sbjct: 181 HVAFFLLFKYPQEFGGPALLTPPAFLKQIFPDTR-YVGGFGTAPQARVPDRPAGGVVFGR 239

Query: 236 RSWGRGNVLGGS 247
            +WGRG  LGG+
Sbjct: 240 HNWGRGQTLGGN 251

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
UNIPROTKB|Q5ZMF9	251	DERL1 "Uncharacterized protein	0.991	0.976	0.550	5.9e-73
UNIPROTKB|Q9BUN8	251	DERL1 "Derlin-1" [Homo sapiens	0.991	0.976	0.530	2.9e-71
ZFIN|ZDB-GENE-040426-2793	261	derl1 "Der1-like domain family	0.995	0.942	0.538	6.1e-71
UNIPROTKB|Q71SS4	251	DERL1 "Derlin-1" [Bos taurus (	0.991	0.976	0.526	7.7e-71
UNIPROTKB|E2RT23	251	DERL1 "Uncharacterized protein	0.991	0.976	0.522	9.9e-71
MGI|MGI:1915069	251	Derl1 "Der1-like domain family	0.991	0.976	0.518	4.3e-70
RGD|1311835	251	Derl1 "derlin 1" [Rattus norve	0.991	0.976	0.518	4.3e-70
UNIPROTKB|F1MQ07	251	DERL1 "Derlin-1" [Bos taurus (	0.991	0.976	0.473	7.9e-62
WB|WBGene00000843	245	cup-2 [Caenorhabditis elegans	0.975	0.983	0.475	9e-61
UNIPROTKB|I3L902	200	DERL1 "Uncharacterized protein	0.785	0.97	0.560	1.3e-59

UNIPROTKB|Q5ZMF9 DERL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 137/249 (55%), Positives = 170/249 (68%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSDL DWF S P  TR+W A +IA  + G+ GL+    L L  D F+N F IWRPITA F
Sbjct:     1 MSDLGDWFRSIPLITRYWFAGSIAVPLIGKLGLVSPVYLFLWPDAFINRFQIWRPITATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             ++P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L+ D+  
Sbjct:    61 FFPVGPGTGFLYLVNLYFLYQYSSRLETGAFDGRPADYMFMLLFNWICIVITGLVMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL FKYP ++GG   LSTP F+Y+W PN R  V GFG  P   RR AE    GGR 
Sbjct:   181 HLYFFLMFKYPMDLGGRNFLSTPQFLYRWLPNRRGGVSGFGIPPASMRRAAEDQQGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

GO:0042288 "MHC class I protein binding" evidence=ISS

UNIPROTKB|Q9BUN8 DERL1 "Derlin-1" [Homo sapiens (taxid:9606)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 132/249 (53%), Positives = 169/249 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ GL+  + L L  + F+  F IWRPITA F
Sbjct:     1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045184 "establishment of protein localization" evidence=TAS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP;IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0019060 "intracellular transport of viral proteins in host cell" evidence=TAS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0004872 "receptor activity" evidence=NAS

GO:0042288 "MHC class I protein binding" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IMP;IDA

GO:0006986 "response to unfolded protein" evidence=IMP

GO:0016021 "integral to membrane" evidence=IDA

ZFIN|ZDB-GENE-040426-2793 derl1 "Der1-like domain family, member 1" [Danio rerio (taxid:7955)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 133/247 (53%), Positives = 167/247 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF + PF TR+W A +IA  + G+ GL+    L+L  + F + F IWRPITA  
Sbjct:     1 MSDIGDWFKNIPFITRYWFAGSIAVPLIGKLGLIGPMYLVLWPEAFFHKFQIWRPITATL 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L+ D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSSRLETGAFDGRPADYMFMLLFNWICIVITGLMMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  V ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDTIVSFWFGTRFKACYLPWVILGFNYIIGGSVVNELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP-RRPAEPTSAGGRSWG 239
             HLYFFL FKYP ++GG + LSTP F+Y+ FPN R  V GFG  P RRP     AGG   G
Sbjct:   181 HLYFFLMFKYPMDLGGRSFLSTPQFLYQMFPNRRGGVSGFGVPPSRRPMPQEQAGGGGGG 240

Query:   240 RGNVLGG 246
              G   GG
Sbjct:   241 GGGGGGG 247

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q71SS4 DERL1 "Derlin-1" [Bos taurus (taxid:9913)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 131/249 (52%), Positives = 168/249 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ GL+  +   L  + F+  F IWRPITA F
Sbjct:     1 MSDIGDWFRSIPTITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQIWRPITATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

UNIPROTKB|E2RT23 DERL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 130/249 (52%), Positives = 168/249 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ GL+  +   L  + F+  F +WRPITA F
Sbjct:     1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQVWRPITATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

MGI|MGI:1915069 Derl1 "Der1-like domain family, member 1" [Mus musculus (taxid:10090)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 129/249 (51%), Positives = 167/249 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ G++  +   L  + F+  F IWRP TA F
Sbjct:     1 MSDIGDWFRSIPAITRYWFAATVAVPLIGKLGIISPAYFFLWPEAFLYRFQIWRPFTATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO

GO:0034620 "cellular response to unfolded protein" evidence=IMP

GO:0042288 "MHC class I protein binding" evidence=ISO

RGD|1311835 Derl1 "derlin 1" [Rattus norvegicus (taxid:10116)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 129/249 (51%), Positives = 167/249 (67%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ G++  +   L  + F+  F IWRP TA F
Sbjct:     1 MSDIGDWFRSIPAITRYWFAATVAVPLIGKLGIISPAYFFLWPEAFLYRFQIWRPFTATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 LMIPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006986 "response to unfolded protein" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO

GO:0034620 "cellular response to unfolded protein" evidence=ISO

GO:0042288 "MHC class I protein binding" evidence=ISO

UNIPROTKB|F1MQ07 DERL1 "Derlin-1" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 118/249 (47%), Positives = 156/249 (62%)

Query:     1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALF 60
             MSD+ DWF S P  TR+W A T+A  + G+ GL+  +   L  + F+  F IWRPITA F
Sbjct:     1 MSDIGDWFRSIPTITRYWFAATVAVPLVGKLGLISPAYFFLWPEAFLYRFQIWRPITATF 60

Query:    61 YYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYF 120
             Y+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+  L  D+  
Sbjct:    61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQV 120

Query:   121 LMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIG 180
             +    +++V+    Q N++       +T  KA YLPWV+   N I+ G  + ELIG L+G
Sbjct:   121 ICFRFIVNVLRQKIQSNREIRPVLYLKTMSKACYLPWVILGFNYIIGGSVINELIGNLVG 180

Query:   181 HLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPAEPTSAGGR- 236
             HLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A+    GGR 
Sbjct:   181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240

Query:   237 SWGRGNVLG 245
             +WG+G  LG
Sbjct:   241 NWGQGFRLG 249

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

WB|WBGene00000843 cup-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 118/248 (47%), Positives = 156/248 (62%)

Query:     3 DLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYY 62
             DL ++    P  TR+W   +    + GRFG +    + L +DL VN F  WRP+TAL YY
Sbjct:     2 DLENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYY 61

Query:    63 PLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLM 122
             P++P  GFH+LM CYFLY+YS  LE   + G+ ADY FML+FNW  C  + +  DIYFL+
Sbjct:    62 PVTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLL 121

Query:   123 NPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHL 182
              PMV+SV+YVWCQ+NKD  V+F F  +F A YLPWVL+  N +L GGG  EL+GIL+GH 
Sbjct:   122 EPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHA 181

Query:   183 YFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGF-GQVPRRPAEPTSAGGRSW--G 239
             YFF+  KYP E G   L+STP F+++  P+E   +HG  G +     +P    G  W  G
Sbjct:   182 YFFVALKYPDEYGVD-LISTPEFLHRLIPDEDGGIHGQDGNIRGARQQPR---GHQWPGG 237

Query:   240 RGNVLGGS 247
              G  LGG+
Sbjct:   238 VGARLGGN 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0043229 "intracellular organelle" evidence=IDA

GO:0051788 "response to misfolded protein" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0097038 "perinuclear endoplasmic reticulum" evidence=IDA

UNIPROTKB|I3L902 DERL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 111/198 (56%), Positives = 139/198 (70%)

Query:    52 IWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVV 111
             IWRPITA FY+P+ P  GF +L+N YFLY YS  LE G FDG+PADY FMLLFNW+C V+
Sbjct:     1 IWRPITATFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVI 60

Query:   112 IALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGV 171
               L  D+  LM P+++SV+YVW QLN+D  V+F F T+FKA YLPWV+   N I+ G  +
Sbjct:    61 TGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVI 120

Query:   172 MELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVP---RRPA 228
              ELIG L+GHLYFFL F+YP ++GG   LSTP F+Y+W P+ R  V GFG  P   RR A
Sbjct:   121 NELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAA 180

Query:   229 EPTSAGGR-SWGRGNVLG 245
             +    GGR +WG+G  LG
Sbjct:   181 DQNGGGGRHNWGQGFRLG 198

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q851X7	DERL2_ORYSJ	No assigned EC number	0.2941	0.9311	0.9236	yes	N/A
Q9ZS88	DER22_ARATH	No assigned EC number	0.3022	0.8502	0.8606	yes	N/A
Q93561	DERL1_CAEEL	No assigned EC number	0.4771	0.9433	0.9510	yes	N/A
Q9BUN8	DERL1_HUMAN	No assigned EC number	0.5301	0.9919	0.9760	yes	N/A
Q99J56	DERL1_MOUSE	No assigned EC number	0.5180	0.9919	0.9760	yes	N/A
Q54IC9	DERL1_DICDI	No assigned EC number	0.3117	0.9716	0.9917	yes	N/A
Q5R9W3	DERL1_PONAB	No assigned EC number	0.5301	0.9919	0.9760	yes	N/A
Q71SS4	DERL1_BOVIN	No assigned EC number	0.5261	0.9919	0.9760	yes	N/A
Q9VQ57	DERL1_DROME	No assigned EC number	0.4156	0.9797	0.9877	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
pfam04511	192	pfam04511, DER1, Der1-like family	1e-58
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	3e-22

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  184 bits (468), Expect = 1e-58
 Identities = 82/193 (42%), Positives = 111/193 (57%), Gaps = 4/193 (2%)

Query: 12  PFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFH 71
           P  TR+W   T+  TI GR  L+    L+  ++L    F IWR +T+LFY+      GFH
Sbjct: 2   PPVTRYWTLATVLLTILGRLNLISPLKLVFNWELVFKKFQIWRLLTSLFYFG---NTGFH 58

Query: 72  FLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMY 131
           FL N YFLY YS +LE G F G+ ADY +ML+F  V   +  L+ + YFL   +   ++Y
Sbjct: 59  FLFNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLITIFGLIVNAYFLGQGLTAMIVY 118

Query: 132 VWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGGVM-ELIGILIGHLYFFLTFKY 190
           VW + N D  V F    +FKA YLPWVL   + +L     + +L+GIL+GHLY+F    Y
Sbjct: 119 VWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSSLVDLMGILVGHLYYFFKDVY 178

Query: 191 PQEMGGPALLSTP 203
           P+  GG  LL TP
Sbjct: 179 PRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score = 92.7 bits (230), Expect = 3e-22
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 12  PFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFH 71
           P  TR+   L  A TI     L+     +    LF+    IWR  T+  Y+         
Sbjct: 20  PPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFG---KPTLD 76

Query: 72  FLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLS--- 128
             M+ YFLY YS +LE+G F+    +Y + LL      +VI  +++IY  ++ +  S   
Sbjct: 77  MFMHVYFLYRYSRMLEEGCFNTSLVEYFWYLLV---ISLVIFAISNIYGGISALGTSFSA 133

Query: 129 -VMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFGGG--VMELIGILIGHLYFF 185
            + Y+W + N  A + F         YLP++L   +  L   G  + +++G ++GHL+ +
Sbjct: 134 TITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSF-LSRRGISIDDVLGFVVGHLFHY 192

Query: 186 LTFKYPQEMGGPALLSTPAFMYKWF 210
               YP  M G  +LSTP ++ K F
Sbjct: 193 FGDIYP--MIGRDILSTPCWVKKLF 215

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG0858|consensus	239		100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632|consensus	258		99.6
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.15
COG0705	228	Membrane associated serine protease [Amino acid tr	98.94
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	98.8
PTZ00101	278	rhomboid-1 protease; Provisional	98.77
KOG4463|consensus	323		98.17
KOG2890|consensus	326		97.58
KOG2289|consensus	316		96.88
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	96.3

>KOG0858|consensus

Probab=100.00  E-value=3.7e-66  Score=439.05  Aligned_cols=235  Identities=38%  Similarity=0.730  Sum_probs=214.7

Q ss_pred             CccHHHHHhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHH
Q psy4231           1 MSDLSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLY   80 (247)
Q Consensus         1 m~~~~~~~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~   80 (247)
                      |+++.+++.+||||||+|+++|+++++++++++++|.+++++|++|+||+|+||++|+++++|   +.++++++|+|++|
T Consensus         2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg---~~gf~fl~n~~Fly   78 (239)
T KOG0858|consen    2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFG---PFGFDFLMNLYFLY   78 (239)
T ss_pred             chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheec---cccHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999999999999999997   77999999999999


Q ss_pred             HhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHH
Q psy4231          81 SYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLF  160 (247)
Q Consensus        81 ~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l  160 (247)
                      +||++||+++|++|++||+||++++++++.+.+.+.+.++++++++.+++|+|||+||+.+|+++|++++||+|+||+++
T Consensus        79 rY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll  158 (239)
T KOG0858|consen   79 RYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLL  158 (239)
T ss_pred             HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHH
Confidence            99999999999999999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCCCCCcccCCCCCCCCCC-CCCCCCCCCC-
Q psy4231         161 ACNLILFGGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPNERTTVHGFGQVPRRPA-EPTSAGGRSW-  238 (247)
Q Consensus       161 ~~~~l~~~~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~g~~w-  238 (247)
                      +++++.+++.+.|++||++||+|+|++|++|+..||++++|||+|+++++++.         +++..+ +.+.+.|++| 
T Consensus       159 ~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~~---------~~~~~~~~~~~~~g~~~~  229 (239)
T KOG0858|consen  159 GFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFADS---------PPTSIRRARELGTGAPWG  229 (239)
T ss_pred             HHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCCC---------CCccccccccCCCCCCCC
Confidence            99999998889999999999999999999999999999999999999999872         111111 1122224899 


Q ss_pred             -CCCCCCCCC
Q psy4231         239 -GRGNVLGGS  247 (247)
Q Consensus       239 -G~g~rLG~~  247 (247)
                       |+|.++|++
T Consensus       230 ~g~~~~~~~~  239 (239)
T KOG0858|consen  230 EGVGMGLGSN  239 (239)
T ss_pred             cccccCCCCC
Confidence             566677764

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=3.3e-55  Score=371.74  Aligned_cols=191  Identities=41%  Similarity=0.798  Sum_probs=183.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhccc
Q psy4231          11 QPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGL   90 (247)
Q Consensus        11 iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~   90 (247)
                      ||||||+++++++++++++++++++|.+++++|++|++++|+||++|+++++|   +.++++++++|++|++|++||+++
T Consensus         1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g---~~~~~~l~~~~~l~~~s~~LE~~~   77 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFG---PFSLNFLFNLYFLYQYSSSLEEGH   77 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEc---CCCHHHHHHHHHHHHHhhHhccCC
Confidence            79999999999999999999999999999999999999999999999999998   899999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHH
Q psy4231          91 FDGKPADYAFMLLFNWVCCVVIALL-----ADIYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLI  165 (247)
Q Consensus        91 f~~~~~df~~~ll~~~~~i~l~~~~-----~~~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l  165 (247)
                      |+++++||+|+++++++++.+++.+     ++.+++++++..+++|+|||+||+.+|+++|++++|++|+||++++++++
T Consensus        78 f~~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l  157 (197)
T PF04511_consen   78 FQGRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLL  157 (197)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHH
Confidence            9999999999999999999888774     35678999999999999999999999999999999999999999999999


Q ss_pred             hcc-hhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChH
Q psy4231         166 LFG-GGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPA  204 (247)
Q Consensus       166 ~~~-~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~  204 (247)
                      +++ +...|++||++||+|+|++|++|+.++|+|++|||+
T Consensus       158 ~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  158 FGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence            998 789999999999999999999999999999999996

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.1e-44  Score=307.00  Aligned_cols=198  Identities=28%  Similarity=0.518  Sum_probs=185.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcc
Q psy4231          10 SQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKG   89 (247)
Q Consensus        10 ~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~   89 (247)
                      .||||||++++++.++++++.+++++|.++++.+++++|+.|+||++|++++++   +..++.+|++|++|+||++||++
T Consensus        18 ~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~---~~~~d~~M~vyf~Y~yS~~LE~g   94 (313)
T COG5291          18 RIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFG---KPTLDMFMHVYFLYRYSRMLEEG   94 (313)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhc---CcchhHHHHHHHHHHHHHHHhcc
Confidence            399999999999999999999999999999999999999999999999999997   78899999999999999999999


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHHhc-
Q psy4231          90 LFDGKPADYAFMLLFNWVCCVVIALLAD-IYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILF-  167 (247)
Q Consensus        90 ~f~~~~~df~~~ll~~~~~i~l~~~~~~-~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l~~-  167 (247)
                      .|...-.||+||++++..+|..++.+.+ ...++++++.+++|+|+++||++++++||+|++++||+|+++++++++.+ 
T Consensus        95 ~f~~~lv~Y~~yl~~~~l~i~a~s~I~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfsfl~~~  174 (313)
T COG5291          95 CFNTSLVEYFWYLLVISLVIFAISNIYGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRR  174 (313)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHHHHhcC
Confidence            9986678999999999999988887775 56899999999999999999999999999999999999999999999998 


Q ss_pred             chhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCC
Q psy4231         168 GGGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPN  212 (247)
Q Consensus       168 ~~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~  212 (247)
                      +....+++|+++||...++.+|||..  |++.+.||.|.++++..
T Consensus       175 g~~i~~vlGf~~g~~~h~~g~I~~mi--~r~~~~t~~~~~~~~~~  217 (313)
T COG5291         175 GISIDDVLGFVVGHLFHYFGDIYPMI--GRDILSTPCWVKKLFNE  217 (313)
T ss_pred             Cccceeeeeeeeccccccccchhhhh--hcccCCCcccccccccC
Confidence            56789999999999999999999986  57889999999998765

>KOG2632|consensus

Probab=99.60  E-value=8e-15  Score=127.03  Aligned_cols=175  Identities=15%  Similarity=0.246  Sum_probs=135.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhh
Q psy4231           4 LSDWFNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYS   83 (247)
Q Consensus         4 ~~~~~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~   83 (247)
                      ..+++-.+|+.|-..+..+.++.+.+.+..+.  ...+.+...+++.|+||++|+.++|    ..-.|+++||.-++..+
T Consensus         7 ~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H----~s~~hllfnmlaL~~~g   80 (258)
T KOG2632|consen    7 VGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVH----LSLPHLLFNMLALWPLG   80 (258)
T ss_pred             CccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHh----ccHHHHHHHHHHHHhch
Confidence            45677889999999999999888888665444  4567777788899999999999999    47799999999999999


Q ss_pred             hhhhcccCCCChhhHHHHHHH----HHHHHHHHHH-Hh--hhh-----hhHHHHHHHHHHHHHhhCCCCeEEEEEEeecc
Q psy4231          84 GLLEKGLFDGKPADYAFMLLF----NWVCCVVIAL-LA--DIY-----FLMNPMVLSVMYVWCQLNKDANVTFMFRTQFK  151 (247)
Q Consensus        84 ~~LE~~~f~~~~~df~~~ll~----~~~~i~l~~~-~~--~~~-----~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~  151 (247)
                      .++|+.+  |.+.-++.+..+    .+++.+++.- +.  +..     .--+...+++.-+-+-+.|....+++|.++||
T Consensus        81 ~~fE~~~--G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP  158 (258)
T KOG2632|consen   81 SQFERTH--GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIP  158 (258)
T ss_pred             hHHHhhc--cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccccc
Confidence            9999987  434444444332    2222233322 21  111     22366677777777888899999999999999


Q ss_pred             cccHHHHHHHHH-HHhcc-hhhHHHHHHHHHHHHHHh
Q psy4231         152 AMYLPWVLFACN-LILFG-GGVMELIGILIGHLYFFL  186 (247)
Q Consensus       152 a~ylP~~~l~~~-~l~~~-~~~~~l~Gi~~GhlY~fl  186 (247)
                      +++.||++++.+ +++.+ |++.+++|+++|+.|-+.
T Consensus       159 ~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  159 IVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            999999998876 66665 699999999999999984

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.15  E-value=2.8e-10  Score=101.24  Aligned_cols=167  Identities=14%  Similarity=0.119  Sum_probs=104.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCcccc--cceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhh
Q psy4231          10 SQPFFTRWWLALTIAFTIGGRFGLLRG--SDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLE   87 (247)
Q Consensus        10 ~iPpvTR~~~~~~~~~sll~~~~~~~p--~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE   87 (247)
                      +-.|+|-.++++|+++.++..++-...  ..+.+ +.....++|+||++|+.|.|.    .-+|+++|++.++..++.+|
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~-~~~~~~~~q~WRl~T~~flH~----~~~Hl~fNml~l~~lG~~iE  166 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAW-PFDPSLKFELWRYFTHALLHF----SLLHILFNLLWWWYLGGAVE  166 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhc-cccccccCCcHHHHhHHHHhC----CHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999998876542221  11212 212335789999999999994    67999999999999999999


Q ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHHHh-hhhhhH-HHHHHHH-HHHHHh--hCCCCeEEEEEEeecccccHHHHHH--
Q psy4231          88 KGLFDGKPADYAFMLLFNWVCCVVIALLA-DIYFLM-NPMVLSV-MYVWCQ--LNKDANVTFMFRTQFKAMYLPWVLF--  160 (247)
Q Consensus        88 ~~~f~~~~~df~~~ll~~~~~i~l~~~~~-~~~~l~-~~l~~~l-~Y~ws~--~np~~~v~~~g~~~i~a~ylP~~~l--  160 (247)
                      +..   .+..|+...+.++++..+....+ +.++.| ++.+.++ .|.|-+  ++|+..+      .+|..++.++.+  
T Consensus       167 ~~~---G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llwl  237 (276)
T PRK10907        167 KRL---GSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLWL  237 (276)
T ss_pred             HHH---ChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHHH
Confidence            875   35567665555555544444333 333332 4444443 466644  4454322      233333333322  


Q ss_pred             H--HHHHhcch--hhHHHHHHHHHHHHHHhhhcc
Q psy4231         161 A--CNLILFGG--GVMELIGILIGHLYFFLTFKY  190 (247)
Q Consensus       161 ~--~~~l~~~~--~~~~l~Gi~~GhlY~fl~~i~  190 (247)
                      +  +.-+.+.+  -..|+.|.++|-+.-+++...
T Consensus       238 ~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~  271 (276)
T PRK10907        238 VAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN  271 (276)
T ss_pred             HHHHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence            1  11122222  379999999999988876543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=98.94  E-value=9.6e-09  Score=88.66  Aligned_cols=169  Identities=20%  Similarity=0.196  Sum_probs=122.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCcccccc--------eeeehHHHhhcc---cccccccceeecCCCCCccHHHHHHHHHH
Q psy4231          11 QPFFTRWWLALTIAFTIGGRFGLLRGSD--------LILIYDLFVNNF---HIWRPITALFYYPLSPANGFHFLMNCYFL   79 (247)
Q Consensus        11 iPpvTR~~~~~~~~~sll~~~~~~~p~~--------l~~~~~~v~~~~---q~WRliT~~f~~g~~~~~~~~~l~~l~~l   79 (247)
                      .|++|+..+..++.+.+...........        ....+.......   |+||++|+-|.|    ..-.|+++|+..+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH----~~~~Hll~N~~~l   91 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLH----AGFLHLLFNMLAL   91 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHH----hhHHHHHHHHHHH
Confidence            4899999999999999887543222111        122333333222   899999999999    4779999999999


Q ss_pred             HHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh----hhh-hHHHHHHHHHHHHHhhCCCCeEEEEEE-eecccc
Q psy4231          80 YSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD----IYF-LMNPMVLSVMYVWCQLNKDANVTFMFR-TQFKAM  153 (247)
Q Consensus        80 ~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~----~~~-l~~~l~~~l~Y~ws~~np~~~v~~~g~-~~i~a~  153 (247)
                      +.++..+|+..  + +..|..+.+.++++..+....++    .+. -.++-++.++=.++...|..+...... ++.++.
T Consensus        92 ~~fg~~le~~~--G-~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~  168 (228)
T COG0705          92 WVFGSNLERRL--G-TLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPAL  168 (228)
T ss_pred             HHhhHHHHHHh--c-hhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHH
Confidence            99999999975  2 34477666666666555554443    133 448889999999999999988887654 566766


Q ss_pred             cHHHHHHHHHHHhcc-h------hhHHHHHHHHHHHHHHh
Q psy4231         154 YLPWVLFACNLILFG-G------GVMELIGILIGHLYFFL  186 (247)
Q Consensus       154 ylP~~~l~~~~l~~~-~------~~~~l~Gi~~GhlY~fl  186 (247)
                      .+-.+.++.+++++. +      ...|+.|++.|-+|..+
T Consensus       169 ~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~  208 (228)
T COG0705         169 ILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAAL  208 (228)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            666677777777752 1      57999999999988865

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.80  E-value=5.6e-09  Score=83.25  Aligned_cols=133  Identities=23%  Similarity=0.266  Sum_probs=81.5

Q ss_pred             hcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh--h-hh-hHH
Q psy4231          48 NNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD--I-YF-LMN  123 (247)
Q Consensus        48 ~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~--~-~~-l~~  123 (247)
                      +++|+||++|+.+.|    .+..|+++|++.++.++..+|+..   .+.++....+.++++..+....+.  . +. -.+
T Consensus         2 ~~~~~wrl~T~~f~h----~~~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~S   74 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVH----ANFLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGAS   74 (145)
T ss_dssp             GCC-TTHHHHGGG------SSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-S-----SSH
T ss_pred             CCCcchhhhHHHHHc----cCHHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccccccccCCCc
Confidence            578999999999999    588999999999999999999976   245565555445444444443332  1 22 236


Q ss_pred             HHHHHHHHHHHhhCCCCeEEEE---EEeecccccHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhh
Q psy4231         124 PMVLSVMYVWCQLNKDANVTFM---FRTQFKAMYLPWVLFACNLILFGGGVMELIGILIGHLYFFLTF  188 (247)
Q Consensus       124 ~l~~~l~Y~ws~~np~~~v~~~---g~~~i~a~ylP~~~l~~~~l~~~~~~~~l~Gi~~GhlY~fl~~  188 (247)
                      +.+.+++-..+...|+.+....   ..+.+...++++.+.... ....+...|+.|+++|.+|.+.-.
T Consensus        75 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~  141 (145)
T PF01694_consen   75 GAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLIL  141 (145)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665555554432221   223344444444433222 222357889999999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>PTZ00101 rhomboid-1 protease; Provisional

Probab=98.77  E-value=6.1e-08  Score=86.33  Aligned_cols=96  Identities=19%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             cCChHHHHHHHHHHHHHHHHhh-C---ccccc--ce----eeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHH
Q psy4231          10 SQPFFTRWWLALTIAFTIGGRF-G---LLRGS--DL----ILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFL   79 (247)
Q Consensus        10 ~iPpvTR~~~~~~~~~sll~~~-~---~~~p~--~l----~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l   79 (247)
                      ++|.+|..+++..+++.++... +   ...|.  .+    ..+++.+ +++|+||++|+.|.|+    ..+|+++|++++
T Consensus        51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~----~~~HLl~Nm~~l  125 (278)
T PTZ00101         51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHA----NIFHTFFNVFFQ  125 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHcc----CHHHHHHHHHHH
Confidence            4899999999999988876543 2   12232  11    1355555 5799999999999994    689999999999


Q ss_pred             HHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy4231          80 YSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIA  113 (247)
Q Consensus        80 ~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~  113 (247)
                      |..+..+|+..   .+..|....++++++-.+++
T Consensus       126 ~~~G~~lE~~~---G~~r~~ilYl~sGi~G~l~s  156 (278)
T PTZ00101        126 LRMGFTLEKNY---GIVKIIILYFLTGIYGNILS  156 (278)
T ss_pred             HHHHHHHHHHH---ChHHHHHHHHHHHHHHHHHH
Confidence            99999999976   24456644444444444443

>KOG4463|consensus

Probab=98.17  E-value=4.5e-06  Score=72.74  Aligned_cols=187  Identities=18%  Similarity=0.289  Sum_probs=108.3

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhhCcccccceeeehHHHhh-cccccccccceeecCCCCCccHHHHHHHHHHHHhhhhh
Q psy4231           8 FNSQPFFTRWWLALTIAFTIGGRFGLLRGSDLILIYDLFVN-NFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLL   86 (247)
Q Consensus         8 ~~~iPpvTR~~~~~~~~~sll~~~~~~~p~~l~~~~~~v~~-~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~L   86 (247)
                      +.+.| |||..++.+.+.++.....-.++. +.++++..+. ++|+||++-+-|.+    -+.-+.++.+|.+| +.+.+
T Consensus         8 ~~nmp-VTK~~~iT~~~~~vvagI~~~k~~-f~l~y~~~l~~y~qywrlL~~qF~~----~n~~e~~~~l~I~Y-~fR~~   80 (323)
T KOG4463|consen    8 FHNMP-VTKAFVITSALFTVVAGIQGRKSK-FGLSYQDILEKYFQYWRLLMSQFAF----SNTPELMFGLYILY-YFRVF   80 (323)
T ss_pred             ccccc-hHHHHHHHHHHHHHHHHhhhcccc-cccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHH-HHHHH
Confidence            34554 999999999988887655444443 4455565554 48999999999998    47778888888888 77999


Q ss_pred             hcccCCCChhhHHHHHHHHHHHH----HHHHHHhh-----hhhh-HHHHHHHHHHHHHhhCCC-CeEEEEEEeecccc--
Q psy4231          87 EKGLFDGKPADYAFMLLFNWVCC----VVIALLAD-----IYFL-MNPMVLSVMYVWCQLNKD-ANVTFMFRTQFKAM--  153 (247)
Q Consensus        87 E~~~f~~~~~df~~~ll~~~~~i----~l~~~~~~-----~~~l-~~~l~~~l~Y~ws~~np~-~~v~~~g~~~i~a~--  153 (247)
                      |+...+.|   |..++++..+..    .++.++.+     .-.+ ..+|+++..|-.--.-|- .-+..|+ +++..|  
T Consensus        81 ERlLGShk---y~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni  156 (323)
T KOG4463|consen   81 ERLLGSHK---YSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNI  156 (323)
T ss_pred             HHHhcccc---ceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-ccccccce
Confidence            99653344   544444443332    22332221     1111 134566665444333342 2334554 455555  


Q ss_pred             -cHHHHHHHHHHHhc----c-------hhhHHHHHHHHHHHHHHhhhcccCCCCCCCcccChHHHHhhcCC
Q psy4231         154 -YLPWVLFACNLILF----G-------GGVMELIGILIGHLYFFLTFKYPQEMGGPALLSTPAFMYKWFPN  212 (247)
Q Consensus       154 -ylP~~~l~~~~l~~----~-------~~~~~l~Gi~~GhlY~fl~~i~P~~~gg~~~l~tP~~~~~l~~~  212 (247)
                       .+|.+=++++.-..    .       +....++|++.+|+|..=     .  -|..--++|.++-.++++
T Consensus       157 ~~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~-----~--agi~~~~~~~~~~~f~d~  220 (323)
T KOG4463|consen  157 SFIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN-----I--AGIRKAKFPEFVASFFDR  220 (323)
T ss_pred             eeecccchhhhcCcccccccccceeecccccccchhhhhhHhhcc-----c--ccccccccHHHHHhhhcc
Confidence             33333333333221    1       135678999999999752     1  133334666666555544

>KOG2890|consensus

Probab=97.58  E-value=0.00055  Score=61.08  Aligned_cols=175  Identities=21%  Similarity=0.203  Sum_probs=112.7

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhhC-----cccccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHh
Q psy4231           8 FNSQPFFTRWWLALTIAFTIGGRFG-----LLRGSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSY   82 (247)
Q Consensus         8 ~~~iPpvTR~~~~~~~~~sll~~~~-----~~~p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~   82 (247)
                      ..+.-++-+.++.+++...+.+..+     ...|. +.+-|.+++  +.+|+++|+-|+-    ..-++.+.++..+.-.
T Consensus        21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~-y~lvp~~~~--~~~WtliTs~fie----~~vw~V~~sv~~L~v~   93 (326)
T KOG2890|consen   21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLPG-YQLVPNALF--FFPWTLITSGFIE----LNVWDVLVSVLTLSVG   93 (326)
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccc-cccCCcchh--hhhHHHHhcchhh----hhHHHHHHHHHheeec
Confidence            3344456667775555555544322     12232 234555555  5999999999997    5779999999999999


Q ss_pred             hhhhhcccCCCChhhHHHHHHHHHHHHH---HHHHH----hh------hhhh-HHHHHHHHHHHHHhhCCCCeEEEEEEe
Q psy4231          83 SGLLEKGLFDGKPADYAFMLLFNWVCCV---VIALL----AD------IYFL-MNPMVLSVMYVWCQLNKDANVTFMFRT  148 (247)
Q Consensus        83 ~~~LE~~~f~~~~~df~~~ll~~~~~i~---l~~~~----~~------~~~l-~~~l~~~l~Y~ws~~np~~~v~~~g~~  148 (247)
                      ++.+|...  |+.....++.+...+.-+   +.+.+    +.      .++- ..+....++.+|-|.-|+..+.--=.-
T Consensus        94 G~~lEp~W--g~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~  171 (326)
T KOG2890|consen   94 GKFLEPNW--GSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSG  171 (326)
T ss_pred             ceeeccCC--CCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccch
Confidence            99999986  333333344333222211   11221    11      2222 378888999999999999987543333


Q ss_pred             ecccccHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHHHhhhccc
Q psy4231         149 QFKAMYLPWVLFACNLILF-------GGGVMELIGILIGHLYFFLTFKYP  191 (247)
Q Consensus       149 ~i~a~ylP~~~l~~~~l~~-------~~~~~~l~Gi~~GhlY~fl~~i~P  191 (247)
                      ++.++-+|...++++++..       .++..-..|..++..|..+-.--|
T Consensus       172 r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  172 RFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             hhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            4444559998877766553       345667789999999998766666

>KOG2289|consensus

Probab=96.88  E-value=0.00075  Score=61.13  Aligned_cols=132  Identities=21%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             HHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhh-------
Q psy4231          45 LFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVIALLAD-------  117 (247)
Q Consensus        45 ~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~~~~~~-------  117 (247)
                      +..++.|.||++|+.+.|    ..-+|+++|++..-..|-.||+.+  |-..-.+.|++ +++.-.+++.+++       
T Consensus       112 ~~~~r~E~WRllTym~LH----aGi~HL~~N~~~ql~iGi~LE~~~--G~~RiglIYl~-gg~aGSlls~l~d~~~~sVG  184 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLH----AGIFHLLLNMLSQLFIGIPLEQVH--GFLRIGLIYLA-GGVAGSLLSSLFDPNSISVG  184 (316)
T ss_pred             ChhhhchhHHHHHHHHHh----cCHHHHHHHHHHHHhccccHHhhc--CceEEeeehhh-hhhhhHHHHHHhccCCceec
Confidence            445678999999999999    578999999999999999999976  22222334443 3333333333321       


Q ss_pred             ----hhhhHHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHHHhhhc
Q psy4231         118 ----IYFLMNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWVLFACNLILFG----GGVMELIGILIGHLYFFLTFK  189 (247)
Q Consensus       118 ----~~~l~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~~~l~~~----~~~~~l~Gi~~GhlY~fl~~i  189 (247)
                          .+-+-.+....++--|........          +.-.-.+++++++.+|.    .-..|+.|...|-.+-|+..+
T Consensus       185 ASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~  254 (316)
T KOG2289|consen  185 ASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHI  254 (316)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhh
Confidence                112334555555556655433221          11222223345555553    234677788888777777666


Q ss_pred             ccCC
Q psy4231         190 YPQE  193 (247)
Q Consensus       190 ~P~~  193 (247)
                      -|+.
T Consensus       255 ~g~~  258 (316)
T KOG2289|consen  255 GGQL  258 (316)
T ss_pred             ccce
Confidence            6653

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=96.30  E-value=0.0038  Score=47.24  Aligned_cols=55  Identities=20%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             cccccccceeecCCCCCccHHHHHHHHHHHHhhhhhhcccCCCChhhHHHHHHHHHHHHHHH
Q psy4231          51 HIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLEKGLFDGKPADYAFMLLFNWVCCVVI  112 (247)
Q Consensus        51 q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE~~~f~~~~~df~~~ll~~~~~i~l~  112 (247)
                      .+|+++|+.|+.    .+.+.++++...+...++.+|+.-   .+.+++.++++..++..++
T Consensus         7 ~pWtl~T~~fve----~~i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~tnl~   61 (99)
T PF08551_consen    7 YPWTLFTAGFVE----TNIIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVITNLL   61 (99)
T ss_pred             ehHHHHHHHHHH----hHHHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHHhHHH
Confidence            799999999999    688999999999999999999986   2778988887766555443

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.54
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.29

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.54  E-value=2.8e-14  Score=118.20  Aligned_cols=165  Identities=14%  Similarity=0.118  Sum_probs=111.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHhhCccc--ccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhhh
Q psy4231          10 SQPFFTRWWLALTIAFTIGGRFGLLR--GSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLLE   87 (247)
Q Consensus        10 ~iPpvTR~~~~~~~~~sll~~~~~~~--p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~LE   87 (247)
                      +.||+|+.+++.++++.++....-..  ...+.++++. .++.|+||++|+.|.|+    ...|+++|++.++.+++.+|
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~----~~~Hl~~Nm~~l~~~g~~~E   76 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHF----SLMHILFNLLWWWYLGGAVE   76 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCC----SHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999987653211  1234456654 45789999999999994    66999999999999999999


Q ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHHHhhhh-hhH-HHHHHHHH---HHHHhhCCCCeEEEEEEeecccccHHHHHHHH
Q psy4231          88 KGLFDGKPADYAFMLLFNWVCCVVIALLADIY-FLM-NPMVLSVM---YVWCQLNKDANVTFMFRTQFKAMYLPWVLFAC  162 (247)
Q Consensus        88 ~~~f~~~~~df~~~ll~~~~~i~l~~~~~~~~-~l~-~~l~~~l~---Y~ws~~np~~~v~~~g~~~i~a~ylP~~~l~~  162 (247)
                      +..   .+.+|+.+.+.+++...+.+..++.+ ..+ ++.+++++   .+.++++|+.++.    ++.+...+-.+.+++
T Consensus        77 ~~~---G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~  149 (181)
T 2xov_A           77 KRL---GSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVA  149 (181)
T ss_dssp             HHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHH
T ss_pred             HHh---ChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHH
Confidence            975   35678777666666665555554322 222 44443333   2346788887653    233332222222344


Q ss_pred             HHHh----cchhhHHHHHHHHHHHHHHh
Q psy4231         163 NLIL----FGGGVMELIGILIGHLYFFL  186 (247)
Q Consensus       163 ~~l~----~~~~~~~l~Gi~~GhlY~fl  186 (247)
                      ++..    +-+...|+.|+++|.++-.+
T Consensus       150 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~  177 (181)
T 2xov_A          150 GWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (181)
T ss_dssp             HHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            4432    12468999999999998765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.29  E-value=1.3e-11  Score=103.35  Aligned_cols=166  Identities=16%  Similarity=0.212  Sum_probs=109.5

Q ss_pred             hcCChHHHHHHHHHHHHHHHHhhCccc--ccceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhh
Q psy4231           9 NSQPFFTRWWLALTIAFTIGGRFGLLR--GSDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLL   86 (247)
Q Consensus         9 ~~iPpvTR~~~~~~~~~sll~~~~~~~--p~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~L   86 (247)
                      .+.||+|+.++++++++.++....-..  ...+.++++.+ ++.|+||++|+.|.|+    ...|+++|++.++..++.+
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~----~~~Hl~~Nm~~l~~~G~~l   80 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHL----SNLHILFNLSWFFIFGGMI   80 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCS----SHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999887643111  12345666655 5789999999999994    6799999999999999999


Q ss_pred             hcccCCCChhhHHHHHHHHHHHHHHHHHHhhh-hhh-HHHHHHHHHH---HHHhhCCCCeEEEEEEeecccccHHHHHHH
Q psy4231          87 EKGLFDGKPADYAFMLLFNWVCCVVIALLADI-YFL-MNPMVLSVMY---VWCQLNKDANVTFMFRTQFKAMYLPWVLFA  161 (247)
Q Consensus        87 E~~~f~~~~~df~~~ll~~~~~i~l~~~~~~~-~~l-~~~l~~~l~Y---~ws~~np~~~v~~~g~~~i~a~ylP~~~l~  161 (247)
                      |+..   .+..|+.+.+.+++...+.+..+.. +.. .|+.+++++-   +..+++|+. .    .++.+...+-.+.++
T Consensus        81 E~~~---G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~  152 (196)
T 2nr9_A           81 ERTF---GSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIA  152 (196)
T ss_dssp             HHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTT
T ss_pred             HHHH---ChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHH
Confidence            9975   3566776666665555555544422 222 2444433331   234566665 1    134444433333344


Q ss_pred             HHHHhc-----chhhHHHHHHHHHHHHHHhh
Q psy4231         162 CNLILF-----GGGVMELIGILIGHLYFFLT  187 (247)
Q Consensus       162 ~~~l~~-----~~~~~~l~Gi~~GhlY~fl~  187 (247)
                      ++++..     -+...|+.|+++|.++-++.
T Consensus       153 ~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          153 LGFISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             HHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            555432     24689999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.36
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.34

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=1.5e-13  Score=112.42  Aligned_cols=172  Identities=15%  Similarity=0.229  Sum_probs=108.4

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHhhCcccc-cceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhh
Q psy4231           8 FNSQPFFTRWWLALTIAFTIGGRFGLLRG-SDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLL   86 (247)
Q Consensus         8 ~~~iPpvTR~~~~~~~~~sll~~~~~~~p-~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~L   86 (247)
                      +.+.+|||..+++.++++.++...+...+ ..+...+....+++|+||++|+.|.|    .+..|+++|++.++..+..+
T Consensus         2 l~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H----~~~~Hl~~N~~~l~~~g~~~   77 (189)
T d2nr9a1           2 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVH----LSNLHILFNLSWFFIFGGMI   77 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCC----SSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhc----CCHHHHHHHHHHHHHHHHHH
Confidence            45778999999999999998877653333 22333344556788999999999999    47899999999999999999


Q ss_pred             hcccCCCChhhHHHHHHHHHHHHHHHHHHh-hhhhh-HHHHHHHHHHHHHhhCCCCeEEEEEEeecccccHHHH--HHHH
Q psy4231          87 EKGLFDGKPADYAFMLLFNWVCCVVIALLA-DIYFL-MNPMVLSVMYVWCQLNKDANVTFMFRTQFKAMYLPWV--LFAC  162 (247)
Q Consensus        87 E~~~f~~~~~df~~~ll~~~~~i~l~~~~~-~~~~l-~~~l~~~l~Y~ws~~np~~~v~~~g~~~i~a~ylP~~--~l~~  162 (247)
                      |+..   .+.+++...+.++++..+..... +.+.. .++.++++.-.+.-..+..+..    +.++.+.+..+  .+++
T Consensus        78 E~~~---G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  150 (189)
T d2nr9a1          78 ERTF---GSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTMLLVGIAL  150 (189)
T ss_dssp             HHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTTTTTTTTH
T ss_pred             HHHH---HHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhH----hccHHHHHHHHHHHHHH
Confidence            9976   35666655544444444443333 33333 3555555543333332222221    12233333322  2233


Q ss_pred             HHHhc---c--hhhHHHHHHHHHHHHHHhhhcc
Q psy4231         163 NLILF---G--GGVMELIGILIGHLYFFLTFKY  190 (247)
Q Consensus       163 ~~l~~---~--~~~~~l~Gi~~GhlY~fl~~i~  190 (247)
                      .++..   .  +...|+.|.++|.++-++....
T Consensus       151 ~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~  183 (189)
T d2nr9a1         151 GFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  183 (189)
T ss_dssp             HHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34432   1  2579999999999998775543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=7.3e-13  Score=107.14  Aligned_cols=169  Identities=15%  Similarity=0.147  Sum_probs=100.5

Q ss_pred             hcCChHHHHHHHHHHHHHHHHhhCcccc--cceeeehHHHhhcccccccccceeecCCCCCccHHHHHHHHHHHHhhhhh
Q psy4231           9 NSQPFFTRWWLALTIAFTIGGRFGLLRG--SDLILIYDLFVNNFHIWRPITALFYYPLSPANGFHFLMNCYFLYSYSGLL   86 (247)
Q Consensus         9 ~~iPpvTR~~~~~~~~~sll~~~~~~~p--~~l~~~~~~v~~~~q~WRliT~~f~~g~~~~~~~~~l~~l~~l~~~~~~L   86 (247)
                      ++.+|||..+++.++++.++....-..+  ..+.++.+. .+++|+||++|+.|.|    .+-.|+++|++.++..++.+
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~-~~~g~~wrl~T~~f~H----~~~~Hl~~N~~~l~~~G~~l   75 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMH----FSLMHILFNLLWWWYLGGAV   75 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCGGGGTGGGGCC----CSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcc-cccCchHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHH
Confidence            3679999999999999888765422122  122334443 4578999999999999    47899999999999999999


Q ss_pred             hcccCCCChhhHHHHHHHHHHHHHHHHHHhhhh-hh-HHHHHHHHH-HH--HHhhCCCCeEEEEEEeecccccHHHHHHH
Q psy4231          87 EKGLFDGKPADYAFMLLFNWVCCVVIALLADIY-FL-MNPMVLSVM-YV--WCQLNKDANVTFMFRTQFKAMYLPWVLFA  161 (247)
Q Consensus        87 E~~~f~~~~~df~~~ll~~~~~i~l~~~~~~~~-~l-~~~l~~~l~-Y~--ws~~np~~~v~~~g~~~i~a~ylP~~~l~  161 (247)
                      |+..   .+..++...+.++++..+.+.++..+ .. .++.+.++. +.  ...++|....   . .+......-++.+.
T Consensus        76 E~~~---G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~  148 (180)
T d3b45a1          76 EKRL---GSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI---Y-LQRGLIIFALIWIV  148 (180)
T ss_dssp             HHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC---C-CCHHHHHHHHHHHH
T ss_pred             HHhc---cchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHH---h-hHHHHHHHHHHHHH
Confidence            9975   25566655555555544554444322 11 123332222 22  2223332211   1 11111112222222


Q ss_pred             HHHHh--cc--hhhHHHHHHHHHHHHHHhhhc
Q psy4231         162 CNLIL--FG--GGVMELIGILIGHLYFFLTFK  189 (247)
Q Consensus       162 ~~~l~--~~--~~~~~l~Gi~~GhlY~fl~~i  189 (247)
                      ..+..  +.  +...|+.|+++|.++.+..++
T Consensus       149 ~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~~~  180 (180)
T d3b45a1         149 AGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (180)
T ss_dssp             HHHTTSSCCSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHHHHHHHC
Confidence            22211  11  257899999999999987653