Psyllid ID: psy4234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
cccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccc
cccccccccccEEccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccc
mvnnrvpsvhsktyvtprrpyekARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
mvnnrvpsvhsktyvtprrpyekarLDQELKIigeyglrnkrevWRVKYALAKIRKAArelltldekeqrrlfegnallrrlvrigvldesrmkLDYVLGLKIEDFLERRLQTqvsnallrrlvrigvldesrmkLDYVLGLKIEDFLERRLQTQVFKlglaksihharVLIRQRHI
MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
************************RLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI*****
************TYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELL**************ALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
*****************RRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
****RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQR**
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MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query177 2.2.26 [Sep-21-2011]
P55935195 40S ribosomal protein S9 no N/A 0.768 0.697 0.728 6e-63
P29314194 40S ribosomal protein S9 yes N/A 0.723 0.659 0.686 5e-55
A9L913194 40S ribosomal protein S9 N/A N/A 0.723 0.659 0.686 5e-55
Q6ZWN5194 40S ribosomal protein S9 yes N/A 0.723 0.659 0.686 5e-55
P46781194 40S ribosomal protein S9 yes N/A 0.723 0.659 0.686 5e-55
A6QLG5194 40S ribosomal protein S9 yes N/A 0.723 0.659 0.686 5e-55
Q29197130 40S ribosomal protein S9 yes N/A 0.706 0.961 0.668 7e-52
Q20228189 40S ribosomal protein S9 yes N/A 0.745 0.698 0.601 5e-50
P52810190 40S ribosomal protein S9 yes N/A 0.740 0.689 0.610 8e-49
O59675192 40S ribosomal protein S9- yes N/A 0.740 0.682 0.598 1e-48
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2 SV=2 Back     alignment and function desciption
 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 134/177 (75%), Gaps = 41/177 (23%)

Query: 1   MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
           MVN R+PSV SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 61  LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALL 120
           LLTLDEK+++RLF+GNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT       
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT------- 113

Query: 121 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
                                             QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 114 ----------------------------------QVFKLGLAKSIHHARVLIRQRHI 136

Drosophila melanogaster (taxid: 7227)
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4 Back     alignment and function description
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1 Back     alignment and function description
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3 Back     alignment and function description
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3 Back     alignment and function description
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1 Back     alignment and function description
>sp|Q29197|RS9_PIG 40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1 Back     alignment and function description
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3 SV=1 Back     alignment and function description
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1 Back     alignment and function description
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps9b PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
110671456195 putative ribosomal protein S9 [Diaphorin 0.768 0.697 0.768 9e-65
38048283163 similar to Drosophila melanogaster RpS9, 0.768 0.834 0.728 1e-61
90819966193 putative S9e ribosomal protein [Graphoce 0.768 0.704 0.728 1e-61
195015334195 GH15146 [Drosophila grimshawi] gi|193897 0.768 0.697 0.728 2e-61
194747739195 GF24655 [Drosophila ananassae] gi|195428 0.768 0.697 0.728 2e-61
38047837191 similar to Drosophila melanogaster RpS9, 0.768 0.712 0.728 2e-61
355428300193 hypothetical protein [Triatoma rubida] 0.768 0.704 0.728 2e-61
125977176195 GA28351 [Drosophila pseudoobscura pseudo 0.768 0.697 0.728 2e-61
24661715137 ribosomal protein S9, isoform B [Drosoph 0.768 0.992 0.728 2e-61
24661707195 ribosomal protein S9, isoform A [Drosoph 0.768 0.697 0.728 3e-61
>gi|110671456|gb|ABG81979.1| putative ribosomal protein S9 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  251 bits (641), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 136/177 (76%), Gaps = 41/177 (23%)

Query: 1   MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
           MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE
Sbjct: 1   MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 61  LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALL 120
           LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT       
Sbjct: 61  LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQT------- 113

Query: 121 RRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
                                             QVFKLGLAKSIHHARVLIRQRHI
Sbjct: 114 ----------------------------------QVFKLGLAKSIHHARVLIRQRHI 136

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|38048283|gb|AAR10044.1| similar to Drosophila melanogaster RpS9, partial [Drosophila yakuba] Back     alignment and taxonomy information
>gi|90819966|gb|ABD98740.1| putative S9e ribosomal protein [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|195015334|ref|XP_001984182.1| GH15146 [Drosophila grimshawi] gi|193897664|gb|EDV96530.1| GH15146 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194747739|ref|XP_001956309.1| GF24655 [Drosophila ananassae] gi|195428917|ref|XP_002062512.1| GK17575 [Drosophila willistoni] gi|190623591|gb|EDV39115.1| GF24655 [Drosophila ananassae] gi|194158597|gb|EDW73498.1| GK17575 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|38047837|gb|AAR09821.1| similar to Drosophila melanogaster RpS9, partial [Drosophila yakuba] Back     alignment and taxonomy information
>gi|355428300|gb|AER92466.1| hypothetical protein [Triatoma rubida] Back     alignment and taxonomy information
>gi|125977176|ref|XP_001352621.1| GA28351 [Drosophila pseudoobscura pseudoobscura] gi|195168054|ref|XP_002024847.1| GL17960 [Drosophila persimilis] gi|195178296|ref|XP_002029028.1| GL20135 [Drosophila persimilis] gi|195191346|ref|XP_002029552.1| GL21280 [Drosophila persimilis] gi|54641369|gb|EAL30119.1| GA28351 [Drosophila pseudoobscura pseudoobscura] gi|194103695|gb|EDW25738.1| GL21280 [Drosophila persimilis] gi|194108277|gb|EDW30320.1| GL17960 [Drosophila persimilis] gi|194117383|gb|EDW39426.1| GL20135 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|24661715|ref|NP_729507.1| ribosomal protein S9, isoform B [Drosophila melanogaster] gi|7294920|gb|AAF50250.1| ribosomal protein S9, isoform B [Drosophila melanogaster] gi|16769450|gb|AAL28944.1| LD32106p [Drosophila melanogaster] gi|220954208|gb|ACL89647.1| RpS9-PB [synthetic construct] Back     alignment and taxonomy information
>gi|24661707|ref|NP_524004.2| ribosomal protein S9, isoform A [Drosophila melanogaster] gi|24661711|ref|NP_729506.1| ribosomal protein S9, isoform D [Drosophila melanogaster] gi|194867971|ref|XP_001972186.1| GG14025 [Drosophila erecta] gi|195326350|ref|XP_002029892.1| GM24860 [Drosophila sechellia] gi|195490797|ref|XP_002093291.1| RpS9 [Drosophila yakuba] gi|195589072|ref|XP_002084280.1| GD12912 [Drosophila simulans] gi|60416385|sp|P55935.2|RS9_DROME RecName: Full=40S ribosomal protein S9 gi|7294919|gb|AAF50249.1| ribosomal protein S9, isoform A [Drosophila melanogaster] gi|23093773|gb|AAN11946.1| ribosomal protein S9, isoform D [Drosophila melanogaster] gi|190653969|gb|EDV51212.1| GG14025 [Drosophila erecta] gi|194118835|gb|EDW40878.1| GM24860 [Drosophila sechellia] gi|194179392|gb|EDW93003.1| RpS9 [Drosophila yakuba] gi|194196289|gb|EDX09865.1| GD12912 [Drosophila simulans] gi|254750749|gb|ACT80127.1| LD13662p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
FB|FBgn0010408195 RpS9 "Ribosomal protein S9" [D 0.649 0.589 0.939 8e-53
UNIPROTKB|C9JM19156 RPS9 "Ribosomal protein S9, is 0.728 0.826 0.770 1.8e-46
UNIPROTKB|A6QLG5194 RPS9 "40S ribosomal protein S9 0.587 0.536 0.903 3.8e-46
UNIPROTKB|E2R8R8194 RPS9 "Uncharacterized protein" 0.587 0.536 0.903 3.8e-46
UNIPROTKB|B5MCT8139 RPS9 "40S ribosomal protein S9 0.587 0.748 0.903 3.8e-46
UNIPROTKB|P46781194 RPS9 "40S ribosomal protein S9 0.587 0.536 0.903 3.8e-46
UNIPROTKB|A9L913194 RPS9 "40S ribosomal protein S9 0.587 0.536 0.903 3.8e-46
MGI|MGI:1924096194 Rps9 "ribosomal protein S9" [M 0.587 0.536 0.903 3.8e-46
RGD|2320851139 LOC100364509 "ribosomal protei 0.587 0.748 0.903 3.8e-46
RGD|619889194 Rps9 "ribosomal protein S9" [R 0.587 0.536 0.903 3.8e-46
FB|FBgn0010408 RpS9 "Ribosomal protein S9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 108/115 (93%), Positives = 113/115 (98%)

Query:     1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
             MVN R+PSV SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE
Sbjct:     1 MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query:    61 LLTLDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
             LLTLDEK+++RLF+GNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV
Sbjct:    61 LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQV 115
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS
GO:0006412 "translation" evidence=ISS;NAS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0019843 "rRNA binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
UNIPROTKB|C9JM19 RPS9 "Ribosomal protein S9, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLG5 RPS9 "40S ribosomal protein S9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8R8 RPS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B5MCT8 RPS9 "40S ribosomal protein S9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P46781 RPS9 "40S ribosomal protein S9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A9L913 RPS9 "40S ribosomal protein S9" [Papio anubis (taxid:9555)] Back     alignment and assigned GO terms
MGI|MGI:1924096 Rps9 "ribosomal protein S9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2320851 LOC100364509 "ribosomal protein S9-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|619889 Rps9 "ribosomal protein S9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2BK77RS4_HYPBUNo assigned EC number0.35080.71750.7215yesN/A
P55935RS9_DROMENo assigned EC number0.72880.76830.6974noN/A
P05755RS9B_YEASTNo assigned EC number0.54910.74570.6769yesN/A
Q09757RS9A_SCHPONo assigned EC number0.59300.74010.6858yesN/A
C3MJP5RS4_SULILNo assigned EC number0.31570.72310.7071yesN/A
P14132RS9_DICDINo assigned EC number0.54060.74010.7081yesN/A
Q29197RS9_PIGNo assigned EC number0.66860.70620.9615yesN/A
Q96YV8RS4_SULTONo assigned EC number0.32160.72310.7231yesN/A
P29314RS9_RATNo assigned EC number0.68630.72310.6597yesN/A
Q20228RS9_CAEELNo assigned EC number0.60110.74570.6984yesN/A
Q9FLF0RS92_ARATHNo assigned EC number0.54800.76830.6903yesN/A
A6QLG5RS9_BOVINNo assigned EC number0.68630.72310.6597yesN/A
P46781RS9_HUMANNo assigned EC number0.68630.72310.6597yesN/A
A2SSV9RS4_METLZNo assigned EC number0.33910.74570.7292yesN/A
Q12ZR5RS4_METBUNo assigned EC number0.40320.65530.6304yesN/A
A3DMQ4RS4_STAMFNo assigned EC number0.39180.71750.7559yesN/A
C3NMQ2RS4_SULINNo assigned EC number0.31570.72310.7071yesN/A
A3CWH7RS4_METMJNo assigned EC number0.37420.74570.7252yesN/A
Q18G54RS4_HALWDNo assigned EC number0.33330.71750.7257yesN/A
O28000RS4_ARCFUNo assigned EC number0.43080.66660.6860yesN/A
Q8PV18RS4_METMANo assigned EC number0.35080.76830.6210yesN/A
Q8SRW6RS9_ENCCUNo assigned EC number0.35420.70620.6793yesN/A
Q2FT97RS4_METHJNo assigned EC number0.37570.73440.7182yesN/A
C3MZ03RS4_SULIMNo assigned EC number0.31570.72310.7071yesN/A
O13516RS9A_YEASTNo assigned EC number0.54330.74570.6700yesN/A
P39467RS4_SULACNo assigned EC number0.31570.72310.7272yesN/A
A1RWT8RS4_THEPDNo assigned EC number0.34500.72310.7441yesN/A
P52810RS9_PODASNo assigned EC number0.61040.74010.6894yesN/A
Q9HJD7RS4_THEACNo assigned EC number0.36840.73440.6532yesN/A
Q6ZWN5RS9_MOUSENo assigned EC number0.68630.72310.6597yesN/A
Q8TRR1RS4_METACNo assigned EC number0.35080.76270.6192yesN/A
A7IAH7RS4_METB6No assigned EC number0.35460.74010.7081yesN/A
Q9YB58RS4_AERPENo assigned EC number0.31570.72310.7485yesN/A
C3N8R6RS4_SULIYNo assigned EC number0.31570.72310.7071yesN/A
Q0W1V5RS4_UNCMANo assigned EC number0.33330.75700.6536yesN/A
A8A8W3RS4_IGNH4No assigned EC number0.37420.71750.7650yesN/A
O59675RS9B_SCHPONo assigned EC number0.59880.74010.6822yesN/A
Q8TVC0RS4_METKANo assigned EC number0.34100.72310.6881yesN/A
A0B9L2RS4_METTPNo assigned EC number0.44160.66660.6448yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
PTZ00155181 PTZ00155, PTZ00155, 40S ribosomal protein S9; Prov 4e-66
PLN00189194 PLN00189, PLN00189, 40S ribosomal protein S9; Prov 5e-60
TIGR01018162 TIGR01018, rpsD_arch, ribosomal protein S4(archaea 2e-47
PRK04051177 PRK04051, rps4p, 30S ribosomal protein S4P; Valida 2e-38
pfam0016393 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N 9e-20
COG0522205 COG0522, RpsD, Ribosomal protein S4 and related pr 9e-15
pfam0147948 pfam01479, S4, S4 domain 0.001
>gnl|CDD|185484 PTZ00155, PTZ00155, 40S ribosomal protein S9; Provisional Back     alignment and domain information 
 Score =  199 bits (509), Expect = 4e-66
 Identities = 102/174 (58%), Positives = 114/174 (65%), Gaps = 41/174 (23%)

Query: 4   NRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLT 63
            R    HSKTY TPRRP+EK RLD ELK+ GEYGL+NKRE+WRV+Y LAKIRKAARELLT
Sbjct: 2   GRNYRNHSKTYKTPRRPFEKERLDAELKLCGEYGLKNKREIWRVQYTLAKIRKAARELLT 61

Query: 64  LDEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRL 123
           LDEK+ +RLFEG                                          ALLRR+
Sbjct: 62  LDEKDPKRLFEG-----------------------------------------EALLRRM 80

Query: 124 VRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
            R+G+LDE   KLDYVLGL +E  LERRLQT+VFKLGLAKSIHHARVLIRQRHI
Sbjct: 81  HRLGLLDEDERKLDYVLGLTVEKLLERRLQTKVFKLGLAKSIHHARVLIRQRHI 134

Length = 181
>gnl|CDD|177783 PLN00189, PLN00189, 40S ribosomal protein S9; Provisional Back     alignment and domain information
>gnl|CDD|213577 TIGR01018, rpsD_arch, ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) Back     alignment and domain information
>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated Back     alignment and domain information
>gnl|CDD|215762 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain Back     alignment and domain information
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201819 pfam01479, S4, S4 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 177
TIGR01018162 rpsD_arch ribosomal protein S4(archaeal type)/S9(e 100.0
PLN00189194 40S ribosomal protein S9; Provisional 100.0
PTZ00155181 40S ribosomal protein S9; Provisional 100.0
PRK04051177 rps4p 30S ribosomal protein S4P; Validated 100.0
KOG3301|consensus183 100.0
KOG4655|consensus181 99.93
COG0522205 RpsD Ribosomal protein S4 and related proteins [Tr 99.91
CHL00113201 rps4 ribosomal protein S4; Reviewed 99.22
TIGR01017200 rpsD_bact ribosomal protein S4, bacterial/organell 98.96
PRK05327203 rpsD 30S ribosomal protein S4; Validated 98.95
PF0016394 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal d 98.65
PF0147948 S4: S4 domain; InterPro: IPR002942 Ribosomes are t 97.09
KOG3301|consensus183 95.25
PF0016394 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal d 86.49
cd0016570 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The 85.73
>TIGR01018 rpsD_arch ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) Back     alignment and domain information 
Probab=100.00  E-value=1.3e-47  Score=311.77  Aligned_cols=128  Identities=66%  Similarity=1.054  Sum_probs=123.7

Q ss_pred             CCCCCccccCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHHhc
Q psy4234           7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVRIG   86 (177)
Q Consensus         7 ~~~~~k~~~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~~G   86 (177)
                      |++++|+|+||+|||+++++++|+++|++|||+||+|||+|+++|++||++|+.|++++  ||++++++++|+++|++||
T Consensus         4 p~~~~k~~~~P~~pw~ker~~~E~~l~~kYgLknk~E~wk~~~~~~kiR~~Ar~L~~l~--d~~r~~~~~~LL~kL~~~G   81 (162)
T TIGR01018         4 PRKPRKKYETPRHPWIKERLDRELKLVGKYGLRNKKEVWKAETTLRKYRRAARELLGLD--DEQRLFEGNQLLRRLVRLG   81 (162)
T ss_pred             CCCCCcccCCCCCChhhhhCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999999999999999  8999999999999999999


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCChH
Q psy4234          87 VLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIH  166 (177)
Q Consensus        87 ll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~si~  166 (177)
                      +|++.+.+|                                         |+|+++++++|||||||++||++|||+|++
T Consensus        82 ll~e~~~~L-----------------------------------------d~vl~Ltv~~~leRRL~~vv~r~g~a~s~~  120 (162)
T TIGR01018        82 ILDEENAKL-----------------------------------------DDVLGLTVEDFLERRLQTQVFKKGLARTIH  120 (162)
T ss_pred             CCccccCCH-----------------------------------------HHHHhccHHHHHHHhHhhHhhhccCcCCHH
Confidence            998545666                                         999999999999999999999999999999


Q ss_pred             hhhhhhccCCC
Q psy4234         167 HARVLIRQRHI  177 (177)
Q Consensus       167 ~ArqlI~hGHI  177 (177)
                      ||||||+||||
T Consensus       121 ~ArqlI~hgHI  131 (162)
T TIGR01018       121 QARQLIVHGHI  131 (162)
T ss_pred             HHHHHhhCCCe
Confidence            99999999998

This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4.
>PLN00189 40S ribosomal protein S9; Provisional Back     alignment and domain information
>PTZ00155 40S ribosomal protein S9; Provisional Back     alignment and domain information
>PRK04051 rps4p 30S ribosomal protein S4P; Validated Back     alignment and domain information
>KOG3301|consensus Back     alignment and domain information
>KOG4655|consensus Back     alignment and domain information
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00113 rps4 ribosomal protein S4; Reviewed Back     alignment and domain information
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type Back     alignment and domain information
>PRK05327 rpsD 30S ribosomal protein S4; Validated Back     alignment and domain information
>PF00163 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal domain; InterPro: IPR001912 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3301|consensus Back     alignment and domain information
>PF00163 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal domain; InterPro: IPR001912 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
3izb_C197 Localization Of The Small Subunit Ribosomal Protein 3e-47
3jyv_D158 Structure Of The 40s Rrna And Proteins And PE TRNA 6e-46
3iz6_C195 Localization Of The Small Subunit Ribosomal Protein 1e-42
2xzm_D181 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-42
1s1h_D179 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-39
3zey_6190 High-resolution Cryo-electron Microscopy Structure 5e-34
3j20_D180 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-11
3j20_D180 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-08
>pdb|3IZB|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 197 Back     alignment and structure 
Iteration: 1

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 116/173 (67%), Gaps = 41/173 (23%)
Query: 5   RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
           R P  +SKTY TP+RPYE +RLD ELK+ GE+GL+NK+E++R+ + L+KIR+AAR+LLT 
Sbjct: 3   RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTR 62
Query: 65  DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
           DEK+ +RLFEGNAL+RRLVR+GVL E + KLDYVL LK+EDFLERRLQT           
Sbjct: 63  DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQT----------- 111
Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
                                         QV+KLGLAKS+HHARVLI QRHI
Sbjct: 112 ------------------------------QVYKLGLAKSVHHARVLITQRHI 134
>pdb|3JYV|D Chain D, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 158 Back     alignment and structure
>pdb|3IZ6|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 195 Back     alignment and structure
>pdb|2XZM|D Chain D, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 181 Back     alignment and structure
>pdb|1S1H|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 179 Back     alignment and structure
>pdb|3ZEY|6 Chain 6, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190 Back     alignment and structure
>pdb|3J20|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 180 Back     alignment and structure
>pdb|3J20|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 180 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query177
3u5c_J197 40S ribosomal protein S9-A; translation, ribosome, 1e-35
2xzm_D181 Ribosomal protein S4 containing protein; ribosome, 5e-35
3iz6_C195 40S ribosomal protein S9 (S4P); eukaryotic ribosom 2e-32
2cqj_A71 BRMS2, U3 small nucleolar ribonucleoprotein protei 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D* Length = 197 Back     alignment and structure
 Score =  122 bits (306), Expect = 1e-35
 Identities = 94/173 (54%), Positives = 116/173 (67%), Gaps = 41/173 (23%)

Query: 5   RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
           R P  +SKTY TP+RPYE +RLD ELK+ GE+GL+NK+E++R+ + L+KIR+AAR+LLT 
Sbjct: 3   RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTR 62

Query: 65  DEKEQRRLFEGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLV 124
           DEK+ +RLFEG                                         NAL+RRLV
Sbjct: 63  DEKDPKRLFEG-----------------------------------------NALIRRLV 81

Query: 125 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 177
           R+GVL E + KLDYVL LK+EDFLERRLQTQV+KLGLAKS+HHARVLI QRHI
Sbjct: 82  RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHI 134
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D Length = 181 Back     alignment and structure
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 195 Back     alignment and structure
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
3u5c_J197 40S ribosomal protein S9-A; translation, ribosome, 100.0
2xzm_D181 Ribosomal protein S4 containing protein; ribosome, 100.0
3j20_D180 30S ribosomal protein S4P; archaea, archaeal, KINK 100.0
3iz6_C195 40S ribosomal protein S9 (S4P); eukaryotic ribosom 100.0
3bbn_D201 Ribosomal protein S4; small ribosomal subunit, spi 99.4
3r8n_D205 30S ribosomal protein S4; protein biosynthesis, RN 99.33
1c05_A159 Ribosomal protein S4 delta 41; two subdomains, uni 99.16
2vqe_D209 30S ribosomal protein S4; tRNA-binding, rRNA-bindi 99.05
2cqj_A71 BRMS2, U3 small nucleolar ribonucleoprotein protei 98.83
1p9k_A79 ORF, hypothetical protein; alfal motif, RNA-bindin 80.92
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D* Back     alignment and structure
Probab=100.00  E-value=3.9e-45  Score=303.84  Aligned_cols=132  Identities=71%  Similarity=1.154  Sum_probs=128.1

Q ss_pred             CCCCCCCccccCCCCccchhhhhHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhHHHHHHHHHH
Q psy4234           5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEQRRLFEGNALLRRLVR   84 (177)
Q Consensus         5 ~~~~~~~k~~~~p~~p~~~~r~~~e~~~~~~Ygl~nk~E~w~~~~~l~~irk~A~~L~~l~~~d~~r~~~~~~Ll~kL~~   84 (177)
                      +.|++++|+|+||+|||+++|+++|+++|++|||+||+|||+|+++|++||++|+.|++++++||++++++++||++|++
T Consensus         3 ~~~~~~~k~~~tP~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~Ll~l~~~dp~r~~~~~~LL~kL~~   82 (197)
T 3u5c_J            3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR   82 (197)
T ss_dssp             CCCCCCCCSCCCCSSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCCCCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcccCCC
Q psy4234          85 IGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKS  164 (177)
Q Consensus        85 ~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlglA~s  164 (177)
                      ||++++++++|                                         ++|+++++++|||+|||++|+++|||+|
T Consensus        83 ~Gil~~~~~~L-----------------------------------------~~v~~l~~~~~le~RLD~~L~r~G~a~S  121 (197)
T 3u5c_J           83 VGVLSEDKKKL-----------------------------------------DYVLALKVEDFLERRLQTQVYKLGLAKS  121 (197)
T ss_dssp             HTSSCGGGCSS-----------------------------------------HHHHHCCHHHHHTTSHHHHHHHSSTTSS
T ss_pred             cCCCCCcccCh-----------------------------------------hhhhcccHHHHHHHHHHHHHHHccccCC
Confidence            99998767777                                         8999999999999999999999999999


Q ss_pred             hHhhhhhhccCCC
Q psy4234         165 IHHARVLIRQRHI  177 (177)
Q Consensus       165 i~~ArqlI~hGHI  177 (177)
                      +.+|+|||.||||
T Consensus       122 r~~ArqLI~~GhV  134 (197)
T 3u5c_J          122 VHHARVLITQRHI  134 (197)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHcCCE
Confidence            9999999999998
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D Back     alignment and structure
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Back     alignment and structure
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Back     alignment and structure
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query177
d1c06a_159 Ribosomal protein S4 {Bacillus stearothermophilus 99.75
d2gy9d1204 Ribosomal protein S4 {Escherichia coli [TaxId: 562 99.71
d2uubd1208 Ribosomal protein S4 {Thermus thermophilus [TaxId: 99.71
d1vioa258 Pseudouridine synthase RsuA N-terminal domain {Hae 92.48
d1kska359 Pseudouridine synthase RsuA N-terminal domain {Esc 91.7
d1p9ka_79 Hypothetical protein YbcJ {Escherichia coli [TaxId 89.48
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.75  E-value=5e-20  Score=146.48  Aligned_cols=77  Identities=29%  Similarity=0.427  Sum_probs=66.7

Q ss_pred             HHHHhccccccccchhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcchhhhhhhhhhhhhhhhcc
Q psy4234          81 RLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVSNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLG  160 (177)
Q Consensus        81 kL~~~Gll~~~k~kl~~~ygl~~~q~~~rr~~~~~~~a~~~rl~~~~~~~e~~~~l~~vl~l~v~~fleRRLqtvv~rlg  160 (177)
                      |+++||+...+|||++|+||++|+||     +++|.+|..               ..+..|.++..+||+|||++|||+|
T Consensus         2 K~S~yg~qL~eKQK~r~~YGi~EkQf-----~~~~~~A~~---------------~~g~tg~~ll~llE~RlD~vv~r~g   61 (159)
T d1c06a_           2 KLSEYGLQLQEKQKLRHMYGVNERQF-----RKTFEEAGK---------------MPGKHGENFMILLESRLDNLVYRLG   61 (159)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCCHHHH-----HHHHHHHTT---------------SSSTHHHHHHHHHHHCHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHcCccHHHH-----HHHHHHHHh---------------cCCCcchhHHHHHHHHhhhhhccCc
Confidence            46789995555999999999988877     456666632               4678899999999999999999999


Q ss_pred             cCCChHhhhhhhccCCC
Q psy4234         161 LAKSIHHARVLIRQRHI  177 (177)
Q Consensus       161 lA~si~~ArqlI~hGHI  177 (177)
                      ||.|+.+|||+|.||||
T Consensus        62 fa~t~~~arQ~v~Hghi   78 (159)
T d1c06a_          62 LARTRRQARQLVTHGHI   78 (159)
T ss_dssp             SSSSHHHHHHHHHTSCE
T ss_pred             ccCCHHHHHHHHHhcce
Confidence            99999999999999997
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure