Psyllid ID: psy4245

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MRVRAPNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYLHDEPSRPMSVSSSSVMSPSSRTTTCPYSESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEHLYL
ccccccHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
ccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHEccccHcHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHccc
mrvrapntiamvdsedpqlADEYVQEFVLDhfedvnvkREIInnneqdatnhnisnhqrlpsiqsipvpnggsvhiqspphhlltppgssihpqdyqnsmlhggvlmypgtpgtppdtppgsnspphqhyhhmdhpshphiqqlppraqtyhdmfmpphpnpfrqeevpldmrrHCAAdwslvdehggkylhdepsrpmsvssssvmspssrtttcpysesdlisddlLMCLSVRELNkklhgyprDQIAKLKAKRRTlknrgyaqncrskrlHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNkdrseaehlyl
mrvrapntiamvdsedpqlADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYLHDEPSRPmsvssssvmspssRTTTCPYSESDLISDDLLMCLSVRELnkklhgyprdqiaklkakrrtlknrgyaqncrskrlhqrqelEVTNKHLQQQLQKMKSEIKQIVEErnhykkqyeivmrnkdrseaehlyl
MRVRAPNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYpgtpgtppdtppgsnspphqhyhhmdhpshphIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYLHDEPsrpmsvssssvmspssrTTTCPYSESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEHLYL
*******************ADEYVQEFVLDHFEDVNVKREII***********************************************************************************************************************************RHCAADWSLVDE************************************DLISDDLLMCLSVRELNKKLHGYPRDQIAK*****************************************************************************
*************SEDPQLADEYVQEFVL*******************************************************************************************************************************************************************************************************LMCLSVRELN*******************************************************KSEIKQIVEERNHYKKQ******************
MRVRAPNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTP***********************PHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYLHD*************************SESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEHLYL
*RVR*PNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYL*******************************LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVRAPNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEHGGKYLHDEPSRPMSVSSSSVMSPSSRTTTCPYSESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYEIVMRNKDRSEAEHLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
Q789F3359 Transcription factor Maf yes N/A 0.301 0.275 0.494 1e-21
P23091369 Transforming protein Maf N/A N/A 0.301 0.268 0.484 3e-21
P54843370 Transcription factor Maf yes N/A 0.301 0.267 0.494 4e-21
Q4U1U2289 Transcription factor MafA yes N/A 0.277 0.314 0.494 1e-20
O57342286 Transcription factor MafA N/A N/A 0.271 0.311 0.505 1e-20
Q0V9K1352 Transcription factor Maf no N/A 0.301 0.281 0.474 1e-20
A7Z017377 Transcription factor Maf no N/A 0.301 0.262 0.484 1e-20
O75444373 Transcription factor Maf yes N/A 0.301 0.265 0.484 1e-20
Q8CF90359 Transcription factor MafA no N/A 0.271 0.247 0.505 1e-20
P54844369 Transcription factor Maf yes N/A 0.301 0.268 0.484 2e-20
>sp|Q789F3|MAF_CHICK Transcription factor Maf OS=Gallus gallus GN=MAF PE=1 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 71/99 (71%)

Query: 222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEV 281
           D  SD+ L+ +SVRELN++L G  ++++ +LK KRRTLKNRGYAQ+CR KR+ QR  LE 
Sbjct: 245 DRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLES 304

Query: 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320
               L QQ++ +K EI ++V ER+ YK++YE ++ N  R
Sbjct: 305 EKNQLLQQVEHLKQEISRLVRERDAYKEKYEKLVSNGFR 343
Acts as a transcriptional activator or repressor. Positively regulates the expression of alpha A crystallin genes during lens fiber cell differentiation. Binds to Maf recognition elements (MARE).
Gallus gallus (taxid: 9031)
>sp|P23091|MAF_AVIS4 Transforming protein Maf OS=Avian musculoaponeurotic fibrosarcoma virus AS42 GN=V-MAF PE=3 SV=1 Back     alignment and function description
>sp|P54843|MAF_MOUSE Transcription factor Maf OS=Mus musculus GN=Maf PE=1 SV=2 Back     alignment and function description
>sp|Q4U1U2|MAFA_XENTR Transcription factor MafA OS=Xenopus tropicalis GN=mafa PE=2 SV=1 Back     alignment and function description
>sp|O57342|MAFA_COTJA Transcription factor MafA OS=Coturnix coturnix japonica GN=MAFA PE=1 SV=1 Back     alignment and function description
>sp|Q0V9K1|MAF_XENTR Transcription factor Maf OS=Xenopus tropicalis GN=maf PE=2 SV=1 Back     alignment and function description
>sp|A7Z017|MAF_BOVIN Transcription factor Maf OS=Bos taurus GN=MAF PE=2 SV=1 Back     alignment and function description
>sp|O75444|MAF_HUMAN Transcription factor Maf OS=Homo sapiens GN=MAF PE=1 SV=2 Back     alignment and function description
>sp|Q8CF90|MAFA_MOUSE Transcription factor MafA OS=Mus musculus GN=Mafa PE=1 SV=1 Back     alignment and function description
>sp|P54844|MAF_RAT Transcription factor Maf OS=Rattus norvegicus GN=Maf PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
170039892388 conserved hypothetical protein [Culex qu 0.881 0.744 0.361 7e-39
307183770 494 Transcription factor MafA [Camponotus fl 0.881 0.585 0.345 5e-38
91083619376 PREDICTED: similar to traffic jam CG1003 0.814 0.710 0.386 8e-37
270007845413 hypothetical protein TcasGA2_TC014584 [T 0.814 0.646 0.386 9e-37
157116650391 hypothetical protein AaeL_AAEL007686 [Ae 0.890 0.746 0.371 1e-36
332023946 444 Transcription factor MafA [Acromyrmex ec 0.881 0.650 0.352 4e-34
383852475 561 PREDICTED: uncharacterized protein LOC10 0.368 0.215 0.526 8e-30
340714863 538 PREDICTED: hypothetical protein LOC10064 0.368 0.224 0.507 1e-28
350414976 547 PREDICTED: hypothetical protein LOC10074 0.368 0.221 0.5 2e-28
328791995 510 PREDICTED: hypothetical protein LOC72486 0.359 0.231 0.530 4e-28
>gi|170039892|ref|XP_001847753.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863474|gb|EDS26857.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 178/357 (49%), Gaps = 68/357 (19%)

Query: 1   MRVRAPNTIAMVDSEDPQLADEYVQEFVLDHFEDVNVKREIINNNEQDATNHNISNHQRL 60
           M++       +++ E+P  AD Y+QEFVL+H ED NVKRE  +    +A     +  +  
Sbjct: 1   MKLPGERIAKVMNLEEPAFADNYIQEFVLEHLEDTNVKREDTSPTAANAKIWTAATEEN- 59

Query: 61  PSIQSIPV---PNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGG-VLMYP---GTPG 113
                IP+    NG + H++    + +TP        D+     HG  VL+ P   G P 
Sbjct: 60  ---GFIPIRLKANGATWHVEERKVNSITPTS------DFYPHPTHGQPVLLNPPIAGVPS 110

Query: 114 TPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMR 173
           TPP+TPP   SP     +H +  S+P+      R Q      M   P   R E+ PLD+R
Sbjct: 111 TPPETPPVVGSP-----NHPNSASYPYYGN---RIQPDQMESMMIVPQTMRMEQ-PLDLR 161

Query: 174 ---------------------RHCAADWSLVDEHGGKYLH---------------DEPSR 197
                                 H +A+      H G+  H                 P+R
Sbjct: 162 PSHQFSIATEGEWLERKEYLQGHASANGFSHHHHHGQLEHLNPIHGGSHHHLHLHGHPNR 221

Query: 198 PMSVSSS-SVMSPSSRTT-----TCPYSESDLISDDLLMCLSVRELNKKLHGYPRDQIAK 251
           P SVSS+ S+ SP   T+     T   S   +++D++LM LSVRELNK+LHG PRDQ+ +
Sbjct: 222 PHSVSSAGSLASPRHGTSAGSCYTSSNSSDGVLNDEMLMSLSVRELNKRLHGCPRDQVVR 281

Query: 252 LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308
           LK KRRTLKNRGYAQNCRSKRL QR +LE+TN+ LQ ++  MK EI  I +ER+  K
Sbjct: 282 LKQKRRTLKNRGYAQNCRSKRLQQRHDLEITNRQLQSEMHHMKMEIALIKQERDELK 338

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307183770|gb|EFN70444.1| Transcription factor MafA [Camponotus floridanus] Back     alignment and taxonomy information
>gi|91083619|ref|XP_969910.1| PREDICTED: similar to traffic jam CG10034-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270007845|gb|EFA04293.1| hypothetical protein TcasGA2_TC014584 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157116650|ref|XP_001658594.1| hypothetical protein AaeL_AAEL007686 [Aedes aegypti] gi|108876377|gb|EAT40602.1| AAEL007686-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332023946|gb|EGI64164.1| Transcription factor MafA [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383852475|ref|XP_003701752.1| PREDICTED: uncharacterized protein LOC100877315 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340714863|ref|XP_003395942.1| PREDICTED: hypothetical protein LOC100647616 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350414976|ref|XP_003490492.1| PREDICTED: hypothetical protein LOC100741431 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328791995|ref|XP_001120764.2| PREDICTED: hypothetical protein LOC724861 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
FB|FBgn0000964511 tj "traffic jam" [Drosophila m 0.277 0.178 0.572 6.1e-34
UNIPROTKB|O42290286 MAFA "Transcription factor Maf 0.268 0.307 0.5 6.1e-27
UNIPROTKB|Q789F3359 MAF "Transcription factor Maf" 0.292 0.267 0.5 1.3e-25
MGI|MGI:96909370 Maf "avian musculoaponeurotic 0.292 0.259 0.5 1.7e-25
UNIPROTKB|F1NWR0311 MAFB "Transcription factor Maf 0.301 0.318 0.474 2.1e-25
UNIPROTKB|Q90888311 MAFB "Transcription factor Maf 0.301 0.318 0.474 2.1e-25
RGD|3034369 Maf "v-maf musculoaponeurotic 0.277 0.246 0.516 3.6e-25
UNIPROTKB|O75444373 MAF "Transcription factor Maf" 0.277 0.243 0.516 4.5e-25
UNIPROTKB|A7Z017377 MAF "Transcription factor Maf" 0.277 0.241 0.516 5.5e-25
UNIPROTKB|H3BP11383 MAF "Transcription factor Maf" 0.277 0.237 0.516 7.1e-25
FB|FBgn0000964 tj "traffic jam" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 281 (104.0 bits), Expect = 6.1e-34, Sum P(4) = 6.1e-34
 Identities = 55/96 (57%), Positives = 72/96 (75%)

Query:   215 TCP--YSES---DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCR 269
             TC   YS +   D ++DD+L  L+VRELNK+LHG PR+++ +LK KRRTLKNRGYAQNCR
Sbjct:   383 TCSGAYSNATLEDCLNDDMLTTLTVRELNKRLHGCPREEVVRLKQKRRTLKNRGYAQNCR 442

Query:   270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305
             SKRLHQR ELE  N+ L Q L ++K E  ++ +ER+
Sbjct:   443 SKRLHQRHELEKANRVLNQDLHRLKLEYSRVCQERD 478
GO:0008585 "female gonad development" evidence=IMP
GO:0008584 "male gonad development" evidence=IMP
GO:0005634 "nucleus" evidence=ISS;IDA;NAS
GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;NAS
GO:0006351 "transcription, DNA-dependent" evidence=NAS
GO:0046982 "protein heterodimerization activity" evidence=ISS
GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS
GO:0035262 "gonad morphogenesis" evidence=IMP
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0010467 "gene expression" evidence=IMP
UNIPROTKB|O42290 MAFA "Transcription factor MafA" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q789F3 MAF "Transcription factor Maf" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:96909 Maf "avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWR0 MAFB "Transcription factor MafB" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90888 MAFB "Transcription factor MafB" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|3034 Maf "v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75444 MAF "Transcription factor Maf" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z017 MAF "Transcription factor Maf" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H3BP11 MAF "Transcription factor Maf" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
pfam0313193 pfam03131, bZIP_Maf, bZIP Maf transcription factor 4e-37
smart0033865 smart00338, BRLZ, basic region leucin zipper 3e-10
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 0.001
pfam03961450 pfam03961, DUF342, Protein of unknown function (DU 0.003
>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor Back     alignment and domain information 
 Score =  127 bits (322), Expect = 4e-37
 Identities = 46/89 (51%), Positives = 66/89 (74%)

Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTN 283
            SDD L+ +SVRELN+ L G  ++++ +LK +RRTLKNRGYAQ+CRSKR+ QR ELE   
Sbjct: 1   FSDDQLVSMSVRELNRHLRGLSKEEVIRLKQRRRTLKNRGYAQSCRSKRVQQRHELEKEK 60

Query: 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYE 312
             LQQQ++++K E+ ++  ER+  K +YE
Sbjct: 61  SQLQQQVEQLKQEVSRLARERDALKAKYE 89

Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerisation and DNA binding property. Thus, this family is probably related to pfam00170. Length = 93
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
KOG4196|consensus135 100.0
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 99.95
KOG3863|consensus604 99.89
smart0033865 BRLZ basic region leucin zipper. 99.19
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 98.94
KOG4005|consensus 292 98.67
KOG0709|consensus 472 98.59
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 98.57
KOG0837|consensus279 98.36
KOG4343|consensus 655 97.5
KOG4571|consensus294 97.48
KOG3584|consensus348 97.26
KOG3119|consensus269 95.95
PF09789 319 DUF2353: Uncharacterized coiled-coil protein (DUF2 94.62
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 93.54
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 93.31
PF14662193 CCDC155: Coiled-coil region of CCDC155 91.96
PRK10884206 SH3 domain-containing protein; Provisional 91.57
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 91.57
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 91.56
PRK00888105 ftsB cell division protein FtsB; Reviewed 91.02
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 90.99
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 89.6
PRK11637 428 AmiB activator; Provisional 89.55
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 89.37
PRK1542279 septal ring assembly protein ZapB; Provisional 89.26
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 89.08
PRK10884206 SH3 domain-containing protein; Provisional 88.54
PF10186 302 Atg14: UV radiation resistance protein and autopha 88.52
PRK14127109 cell division protein GpsB; Provisional 88.1
PF05529192 Bap31: B-cell receptor-associated protein 31-like 87.6
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 87.15
PF08537 323 NBP1: Fungal Nap binding protein NBP1; InterPro: I 87.08
PF10226195 DUF2216: Uncharacterized conserved proteins (DUF22 86.85
PRK11637 428 AmiB activator; Provisional 86.18
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 86.14
KOG1414|consensus 395 85.72
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 85.68
PF07200150 Mod_r: Modifier of rudimentary (Mod(r)) protein; I 85.63
KOG4005|consensus 292 85.42
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 85.17
PRK03918 880 chromosome segregation protein; Provisional 85.14
TIGR0244965 conserved hypothetical protein TIGR02449. Members 85.07
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 84.51
PF13851201 GAS: Growth-arrest specific micro-tubule binding 84.26
PRK0029568 hypothetical protein; Provisional 84.06
smart00806 426 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a 84.06
cd04776118 HTH_GnyR Helix-Turn-Helix DNA binding domain of th 83.67
TIGR00414 418 serS seryl-tRNA synthetase. This model represents 83.58
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.5
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 83.37
PF1022480 DUF2205: Predicted coiled-coil protein (DUF2205); 83.36
PRK0073668 hypothetical protein; Provisional 83.31
PF13870177 DUF4201: Domain of unknown function (DUF4201) 82.98
KOG1103|consensus 561 82.73
PF15290 305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 82.72
COG307479 Uncharacterized protein conserved in bacteria [Fun 82.52
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 82.51
PRK13169110 DNA replication intiation control protein YabA; Re 82.43
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 82.21
PRK10722247 hypothetical protein; Provisional 81.87
PRK0440675 hypothetical protein; Provisional 81.71
PLN02678 448 seryl-tRNA synthetase 81.66
PF11932 251 DUF3450: Protein of unknown function (DUF3450); In 81.47
PRK0211973 hypothetical protein; Provisional 81.29
PF0798975 Microtub_assoc: Microtubule associated; InterPro: 81.14
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 81.1
PRK0432574 hypothetical protein; Provisional 81.03
PTZ00096143 40S ribosomal protein S15; Provisional 80.73
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 80.5
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 80.5
PRK09039 343 hypothetical protein; Validated 80.48
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 80.37
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 80.05
>KOG4196|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-38  Score=271.80  Aligned_cols=98  Identities=48%  Similarity=0.776  Sum_probs=97.2

Q ss_pred             CCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245         222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV  301 (328)
Q Consensus       222 i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~  301 (328)
                      +.||||+||+|||||||+.|+||++|||.+|||+||||||||||||||.||++|+++||.++.+|++|+++|+.|++++.
T Consensus        22 d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~  101 (135)
T KOG4196|consen   22 DRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR  101 (135)
T ss_pred             CCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q psy4245         302 EERNHYKKQYEIVMRNKD  319 (328)
Q Consensus       302 rErd~yK~K~e~L~~~~f  319 (328)
                      +|+|+||.||++|+.|+|
T Consensus       102 ~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen  102 RELDAYKSKYEALQNSAV  119 (135)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999999999987

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG3863|consensus Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>KOG0709|consensus Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG0837|consensus Back     alignment and domain information
>KOG4343|consensus Back     alignment and domain information
>KOG4571|consensus Back     alignment and domain information
>KOG3584|consensus Back     alignment and domain information
>KOG3119|consensus Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PRK14127 cell division protein GpsB; Provisional Back     alignment and domain information
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8 Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle Back     alignment and domain information
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>KOG1414|consensus Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>smart00806 AIP3 Actin interacting protein 3 Back     alignment and domain information
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>KOG1103|consensus Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PRK10722 hypothetical protein; Provisional Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00096 40S ribosomal protein S15; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
4eot_A95 Crystal Structure Of The Mafa Homodimer Bound To Th 3e-20
2wty_A97 Crystal Structure Of The Homodimeric Mafb In Comple 4e-19
2wt7_B90 Crystal Structure Of The Bzip Heterodimeric Complex 3e-17
3a5t_A107 Crystal Structure Of Mafg-Dna Complex Length = 107 2e-14
1k1v_A41 Solution Structure Of The Dna-Binding Domain Of Maf 1e-05
>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The Consensus Mare Length = 95 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 68/89 (76%)
Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTN 283
            SDD L+ +SVRELN++L G+ ++++ +LK KRRTLKNRGYAQ+CR KR+ QR  LE   
Sbjct: 4   FSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEK 63
Query: 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYE 312
             LQ Q++++K E+ ++ +ER+ YK++YE
Sbjct: 64  CQLQSQVEQLKLEVGRLAKERDLYKEKYE 92
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With The T-Mare Binding Site Length = 97 Back     alignment and structure
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex Mafb:cfos Bound To Dna Length = 90 Back     alignment and structure
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex Length = 107 Back     alignment and structure
>pdb|1K1V|A Chain A, Solution Structure Of The Dna-Binding Domain Of Mafg Length = 41 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
2wt7_B90 Transcription factor MAFB; transcription, transcri 4e-26
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 1e-25
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 5e-08
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 1e-07
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 3e-07
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 2e-06
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 8e-06
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 9e-05
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-04
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
 Score = 98.5 bits (245), Expect = 4e-26
 Identities = 42/86 (48%), Positives = 62/86 (72%)

Query: 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHL 286
           D L+ +SVRELN+ L G+ +D++ +LK KRRTLKNRGYAQ+CR KR+ Q+  LE     L
Sbjct: 1   DQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQL 60

Query: 287 QQQLQKMKSEIKQIVEERNHYKKQYE 312
            QQ++++K E+ ++  ER+ YK + E
Sbjct: 61  IQQVEQLKQEVSRLARERDAYKVKSE 86
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Length = 92 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
2wt7_B90 Transcription factor MAFB; transcription, transcri 100.0
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 100.0
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 99.82
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 99.8
2lz1_A90 Nuclear factor erythroid 2-related factor 2; struc 99.78
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 99.14
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 99.01
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 98.99
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 98.77
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 98.59
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 98.45
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 98.01
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 97.9
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 97.79
3iv1_A78 Tumor susceptibility gene 101 protein; coiled_COIL 91.7
2c9l_Y63 EB1, zebra, BZLF1 trans-activator protein; viral p 91.36
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.27
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 91.17
1gmj_A84 ATPase inhibitor; coiled-coil structure, P depende 90.76
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 89.7
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 88.82
3gp4_A142 Transcriptional regulator, MERR family; structural 87.5
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 87.1
1deb_A54 APC protein, adenomatous polyposis coli protein; c 86.51
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 86.39
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 85.55
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 84.96
3gp4_A142 Transcriptional regulator, MERR family; structural 83.76
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 83.46
3gpv_A148 Transcriptional regulator, MERR family; protein st 83.44
3lay_A175 Zinc resistance-associated protein; salmonella typ 83.34
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 82.63
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 82.38
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 81.77
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 81.69
3m9b_A 251 Proteasome-associated ATPase; coil COIL with 5 bet 81.47
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 81.12
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 80.9
3okq_A141 BUD site selection protein 6; coiled-coil, protein 80.37
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 80.11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
Probab=100.00  E-value=1e-35  Score=239.70  Aligned_cols=89  Identities=47%  Similarity=0.810  Sum_probs=87.9

Q ss_pred             hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245         227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH  306 (328)
Q Consensus       227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~  306 (328)
                      |+||+|||+|||++|+|||++||.+|||+||||||||||||||+||++++++||+++.+|+.+++.|+.|++++.+|+|.
T Consensus         1 deLv~msVreLN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~   80 (90)
T 2wt7_B            1 DQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA   80 (90)
T ss_dssp             CHHHHSCHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy4245         307 YKKQYEIVM  315 (328)
Q Consensus       307 yK~K~e~L~  315 (328)
                      ||+||++|+
T Consensus        81 ~k~k~~~L~   89 (90)
T 2wt7_B           81 YKVKSEKLA   89 (90)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhc
Confidence            999999986
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Back     alignment and structure
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} Back     alignment and structure
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d1k1va_41 a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 1 5e-17
d1sknp_74 a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId 2e-05
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Mafg
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (175), Expect = 5e-17
 Identities = 22/41 (53%), Positives = 33/41 (80%)

Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGY 264
           ++D+ L+ +SVRELN+ L G  +++I +LK +RRTLKNRGY
Sbjct: 1   LTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGY 41
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d1sknp_74 Skn-1 {Caenorhabditis elegans [TaxId: 6239]} 99.84
d1k1va_41 Mafg {Mouse (Mus musculus) [TaxId: 10090]} 99.78
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 89.58
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 88.29
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.84  E-value=7.3e-23  Score=157.95  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             CCCCCCCCCCCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH
Q psy4245         212 RTTTCPYSESDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL  279 (328)
Q Consensus       212 r~~~~~~~l~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L  279 (328)
                      |++..+-.+.+|||.++||+|||+|||.+|  ++||++|+..|+++|||+|||+||||||+||++++.+|
T Consensus         5 rde~ra~~~~iPfs~~~Iv~lpv~eFne~l~~~~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_           5 KDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHcCCCccHHHHHHCCHHHHHHHHHhCCCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            444455568999999999999999999999  78999999999999999999999999999999998653
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure